Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyMolecularFunction	DNA-binding transcription factor activity, RNA polymerase II-specific	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 SHOX NOTO LHX3 PAX7 LHX8 PHOX2B HSF4 ALX4 PRRX2	3.24e-11	1412	54	21	GO:0000981
GeneOntologyMolecularFunction	RNA polymerase II transcription regulatory region sequence-specific DNA binding	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 NOTO LHX3 PAX7 LHX8 PHOX2B HSF4 ALX4 PRRX2	4.79e-10	1459	54	20	GO:0000977
GeneOntologyMolecularFunction	DNA-binding transcription activator activity, RNA polymerase II-specific	HOXA13 PRRX1 ALX1 LHX4 HOXC13 HOXD13 ARX SHOX LHX3 PHOX2B HSF4 ALX4 PRRX2	2.23e-09	560	54	13	GO:0001228
GeneOntologyMolecularFunction	DNA-binding transcription activator activity	HOXA13 PRRX1 ALX1 LHX4 HOXC13 HOXD13 ARX SHOX LHX3 PHOX2B HSF4 ALX4 PRRX2	2.54e-09	566	54	13	GO:0001216
GeneOntologyMolecularFunction	RNA polymerase II cis-regulatory region sequence-specific DNA binding	HOXA13 PRRX1 HOXC13 ZFHX4 HOXD13 ARX ZFHX2 NOTO LHX3 PAX7 PHOX2B HSF4 PRRX2	2.01e-05	1244	54	13	GO:0000978
GeneOntologyMolecularFunction	cis-regulatory region sequence-specific DNA binding	HOXA13 PRRX1 HOXC13 ZFHX4 HOXD13 ARX ZFHX2 NOTO LHX3 PAX7 PHOX2B HSF4 PRRX2	2.52e-05	1271	54	13	GO:0000987
GeneOntologyMolecularFunction	HMG box domain binding	PRRX1 ALX4 PRRX2	3.19e-05	23	54	3	GO:0071837
GeneOntologyBiologicalProcess	embryonic limb morphogenesis	ALX3 HOXA13 PRRX1 ALX1 HOXD13 ALX4 PRRX2	1.13e-07	148	54	7	GO:0030326
GeneOntologyBiologicalProcess	embryonic appendage morphogenesis	ALX3 HOXA13 PRRX1 ALX1 HOXD13 ALX4 PRRX2	1.13e-07	148	54	7	GO:0035113
GeneOntologyBiologicalProcess	limb development	ALX3 HOXA13 PRRX1 ALX1 HOXC13 HOXD13 ALX4 PRRX2	1.16e-07	224	54	8	GO:0060173
GeneOntologyBiologicalProcess	appendage development	ALX3 HOXA13 PRRX1 ALX1 HOXC13 HOXD13 ALX4 PRRX2	1.16e-07	224	54	8	GO:0048736
GeneOntologyBiologicalProcess	appendage morphogenesis	ALX3 HOXA13 PRRX1 ALX1 HOXD13 ALX4 PRRX2	5.17e-07	185	54	7	GO:0035107
GeneOntologyBiologicalProcess	limb morphogenesis	ALX3 HOXA13 PRRX1 ALX1 HOXD13 ALX4 PRRX2	5.17e-07	185	54	7	GO:0035108
GeneOntologyBiologicalProcess	central nervous system neuron differentiation	OTP LHX4 ARX LHX3 PAX7 LHX8 PHOX2B	1.51e-06	217	54	7	GO:0021953
GeneOntologyBiologicalProcess	embryonic skeletal system development	ALX3 PRRX1 ALX1 PAX7 ALX4 PRRX2	2.40e-06	148	54	6	GO:0048706
GeneOntologyBiologicalProcess	medial motor column neuron differentiation	LHX4 LHX3	6.73e-06	2	54	2	GO:0021526
GeneOntologyBiologicalProcess	embryonic skeletal system morphogenesis	ALX3 PRRX1 ALX1 ALX4 PRRX2	9.67e-06	109	54	5	GO:0048704
GeneOntologyBiologicalProcess	animal organ morphogenesis	ALX3 HOXA13 PRRX1 ALX1 LHX4 HOXC13 HOXD13 NOTO LHX3 PAX7 LHX8 ALX4 PRRX2	1.76e-05	1269	54	13	GO:0009887
GeneOntologyBiologicalProcess	dorsal spinal cord development	DRGX LHX3 PAX7	2.52e-05	22	54	3	GO:0021516
GeneOntologyBiologicalProcess	skeletal system development	ALX3 HOXA13 PRRX1 ALX1 HOXD13 SHOX PAX7 ALX4 PRRX2	2.82e-05	615	54	9	GO:0001501
GeneOntologyBiologicalProcess	positive regulation of transcription by RNA polymerase II	HOXA13 PRRX1 ALX1 LHX4 HOXC13 HOXD13 ARX SHOX LHX3 PAX7 PHOX2B ALX4 PRRX2	4.58e-05	1390	54	13	GO:0045944
GeneOntologyBiologicalProcess	inner ear development	HOXA13 PRRX1 NOX3 ATP8B1 PHOX2B PRRX2	5.06e-05	253	54	6	GO:0048839
GeneOntologyBiologicalProcess	pattern specification process	ALX3 ALX1 HOXC13 HOXD13 NOTO LHX3 PAX7 ALX4	6.29e-05	526	54	8	GO:0007389
GeneOntologyBiologicalProcess	somatic motor neuron differentiation	LHX4 LHX3	6.69e-05	5	54	2	GO:0021523
GeneOntologyBiologicalProcess	embryonic hindgut morphogenesis	HOXA13 HOXD13	6.69e-05	5	54	2	GO:0048619
GeneOntologyBiologicalProcess	epithelium development	HOXA13 OTP ALX1 HOXC13 HOXD13 ARX PTCH2 KLK14 NOTO LHX3 PAX7 HSF4 ALX4	8.09e-05	1469	54	13	GO:0060429
GeneOntologyBiologicalProcess	ear development	HOXA13 PRRX1 NOX3 ATP8B1 PHOX2B PRRX2	9.77e-05	285	54	6	GO:0043583
GeneOntologyBiologicalProcess	embryonic forelimb morphogenesis	ALX3 HOXA13 ALX4	1.24e-04	37	54	3	GO:0035115
GeneOntologyBiologicalProcess	central nervous system development	OTP LHX4 ARX DRGX ABCB6 NOTO LHX3 PAX7 LHX8 PHOX2B DHX30	2.29e-04	1197	54	11	GO:0007417
GeneOntologyBiologicalProcess	regionalization	ALX1 HOXC13 HOXD13 NOTO LHX3 PAX7 ALX4	2.37e-04	478	54	7	GO:0003002
GeneOntologyBiologicalProcess	hindgut morphogenesis	HOXA13 HOXD13	2.39e-04	9	54	2	GO:0007442
GeneOntologyBiologicalProcess	cell fate commitment	HOXA13 PRRX1 ARX PTCH2 LHX3 PAX7	2.47e-04	338	54	6	GO:0045165
GeneOntologyBiologicalProcess	spinal cord development	LHX4 DRGX LHX3 PAX7	2.67e-04	119	54	4	GO:0021510
GeneOntologyBiologicalProcess	forelimb morphogenesis	ALX3 HOXA13 ALX4	2.70e-04	48	54	3	GO:0035136
GeneOntologyBiologicalProcess	hindgut development	HOXA13 HOXD13	2.99e-04	10	54	2	GO:0061525
GeneOntologyBiologicalProcess	embryonic organ morphogenesis	ALX3 PRRX1 ALX1 NOTO ALX4 PRRX2	3.02e-04	351	54	6	GO:0048562
GeneOntologyBiologicalProcess	embryonic morphogenesis	ALX3 HOXA13 PRRX1 ALX1 HOXD13 NOTO ALX4 PRRX2	5.00e-04	713	54	8	GO:0048598
GeneOntologyBiologicalProcess	sensory organ development	HOXA13 PRRX1 HOXC13 NOX3 ATP8B1 PHOX2B HSF4 PRRX2	5.84e-04	730	54	8	GO:0007423
GeneOntologyBiologicalProcess	spinal cord association neuron differentiation	LHX3 PAX7	6.00e-04	14	54	2	GO:0021527
GeneOntologyBiologicalProcess	cell differentiation in spinal cord	LHX4 LHX3 PAX7	6.03e-04	63	54	3	GO:0021515
GeneOntologyBiologicalProcess	branching involved in prostate gland morphogenesis	HOXA13 HOXD13	6.91e-04	15	54	2	GO:0060442
GeneOntologyBiologicalProcess	cranial nerve development	DRGX ATP8B1 PHOX2B	7.22e-04	67	54	3	GO:0021545
GeneOntologyBiologicalProcess	skeletal system morphogenesis	ALX3 PRRX1 ALX1 ALX4 PRRX2	7.78e-04	277	54	5	GO:0048705
GeneOntologyBiologicalProcess	neuroendocrine cell differentiation	OTP LHX3	7.89e-04	16	54	2	GO:0061101
GeneOntologyBiologicalProcess	smoothened signaling pathway	PRRX1 EVC2 PTCH2 PRRX2	1.16e-03	176	54	4	GO:0007224
GeneOntologyBiologicalProcess	epithelial cell fate commitment	HOXA13 ARX	1.24e-03	20	54	2	GO:0072148
GeneOntologyBiologicalProcess	diencephalon development	OTP ARX LHX3	1.70e-03	90	54	3	GO:0021536
GeneOntologyBiologicalProcess	neuron fate commitment	PRRX1 LHX3 PAX7	1.75e-03	91	54	3	GO:0048663
GeneOntologyBiologicalProcess	artery morphogenesis	HOXA13 PRRX1 PRRX2	1.81e-03	92	54	3	GO:0048844
GeneOntologyCellularComponent	chromatin	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 SHOX NOTO LHX3 PAX7 LHX8 PHOX2B HSF4 ALX4 PRRX2	3.33e-11	1480	54	21	GO:0000785
HumanPheno	Cranium bifidum occultum	ALX3 ALX1	3.35e-05	2	30	2	HP:0004423
HumanPheno	Bifid nose	ALX3 ALX1 ALX4	3.91e-05	12	30	3	HP:0011803
HumanPheno	Brachydactyly	ALX3 HOXA13 EVC2 ALX1 LHX4 HOXD13 ARX MMP23B PTCH2 SHOX LHX3 ALX4 DHX30	4.38e-05	670	30	13	HP:0001156
HumanPheno	Short digit	ALX3 HOXA13 EVC2 ALX1 LHX4 HOXD13 ARX MMP23B PTCH2 SHOX LHX3 ALX4 DHX30	4.52e-05	672	30	13	HP:0011927
HumanPheno	Midline central nervous system lipomas	ALX3 ALX1	1.00e-04	3	30	2	HP:0006866
HumanPheno	Pericallosal lipoma	ALX3 ALX1	1.00e-04	3	30	2	HP:0006931
HumanPheno	Widow's peak	ALX3 ALX1 DHX30	1.68e-04	19	30	3	HP:0000349
HumanPheno	Tessier cleft	EVC2 ALX1 ALX4	1.96e-04	20	30	3	HP:0002006
HumanPheno	Multiple central nervous system lipomas	ALX3 ALX1	2.00e-04	4	30	2	HP:0100251
Domain	Homeobox_CS	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 SHOX LHX3 PAX7 LHX8 PHOX2B ALX4 PRRX2	3.21e-25	186	53	19	IPR017970
Domain	Homeobox	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 SHOX NOTO LHX3 PAX7 LHX8 PHOX2B ALX4 PRRX2	5.60e-25	234	53	20	PF00046
Domain	HOMEOBOX_1	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 SHOX NOTO LHX3 PAX7 LHX8 PHOX2B ALX4 PRRX2	6.67e-25	236	53	20	PS00027
Domain	HOX	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 SHOX NOTO LHX3 PAX7 LHX8 PHOX2B ALX4 PRRX2	7.27e-25	237	53	20	SM00389
Domain	Homeobox_dom	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 SHOX NOTO LHX3 PAX7 LHX8 PHOX2B ALX4 PRRX2	8.63e-25	239	53	20	IPR001356
Domain	HOMEOBOX_2	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 SHOX NOTO LHX3 PAX7 LHX8 PHOX2B ALX4 PRRX2	8.63e-25	239	53	20	PS50071
Domain	-	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 SHOX NOTO LHX3 PAX7 LHX8 PHOX2B ALX4 PRRX2	2.68e-23	283	53	20	1.10.10.60
Domain	Homeodomain-like	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 SHOX NOTO LHX3 PAX7 LHX8 PHOX2B ALX4 PRRX2	6.66e-22	332	53	20	IPR009057
Domain	OAR	OTP PRRX1 ALX1 ARX DRGX SHOX PAX7 ALX4 PRRX2	6.57e-20	16	53	9	PS50803
Domain	OAR_dom	OTP PRRX1 ALX1 ARX DRGX SHOX PAX7 ALX4 PRRX2	6.57e-20	16	53	9	IPR003654
Domain	OAR	OTP PRRX1 ALX1 ARX DRGX SHOX ALX4 PRRX2	1.53e-17	15	53	8	PF03826
Domain	HoxA13_N	HOXA13 HOXC13 HOXD13	8.61e-08	4	53	3	PF12284
Domain	HoxA13_N	HOXA13 HOXC13 HOXD13	8.61e-08	4	53	3	IPR022067
Domain	-	RASA4 RASA4B	2.37e-05	3	53	2	4.10.1130.10
Domain	HTH_motif	OTP ARX SHOX PRRX2	4.36e-05	69	53	4	IPR000047
Domain	BTK	RASA4 RASA4B	2.81e-04	9	53	2	SM00107
Domain	ZF_BTK	RASA4 RASA4B	2.81e-04	9	53	2	PS51113
Domain	Znf_Btk_motif	RASA4 RASA4B	2.81e-04	9	53	2	IPR001562
Domain	BTK	RASA4 RASA4B	2.81e-04	9	53	2	PF00779
Domain	PH	SPTBN5 RASA4 RALGPS1 OBSCN RASA4B	4.71e-04	229	53	5	PF00169
Domain	RasGAP	RASA4 RASA4B	7.03e-04	14	53	2	SM00323
Domain	RasGAP_CS	RASA4 RASA4B	7.03e-04	14	53	2	IPR023152
Domain	RAS_GTPASE_ACTIV_2	RASA4 RASA4B	8.10e-04	15	53	2	PS50018
Domain	RasGAP	RASA4 RASA4B	8.10e-04	15	53	2	PF00616
Domain	RAS_GTPASE_ACTIV_1	RASA4 RASA4B	8.10e-04	15	53	2	PS00509
Domain	-	RASA4 RASA4B	9.24e-04	16	53	2	1.10.506.10
Domain	LIM	LHX4 LHX3 LHX8	9.90e-04	69	53	3	PF00412
Domain	-	LHX4 LHX3 LHX8	1.03e-03	70	53	3	2.10.110.10
Domain	LIM_DOMAIN_2	LHX4 LHX3 LHX8	1.08e-03	71	53	3	PS50023
Domain	IQ	OBSCN CEP131 CEP97	1.08e-03	71	53	3	PF00612
Domain	Znf_LIM	LHX4 LHX3 LHX8	1.08e-03	71	53	3	IPR001781
Domain	LIM_DOMAIN_1	LHX4 LHX3 LHX8	1.08e-03	71	53	3	PS00478
Domain	LIM	LHX4 LHX3 LHX8	1.08e-03	71	53	3	SM00132
Domain	PH	SPTBN5 RASA4 RALGPS1 OBSCN RASA4B	1.13e-03	278	53	5	SM00233
Domain	PH_DOMAIN	SPTBN5 RASA4 RALGPS1 OBSCN RASA4B	1.15e-03	279	53	5	PS50003
Domain	PH_domain	SPTBN5 RASA4 RALGPS1 OBSCN RASA4B	1.16e-03	280	53	5	IPR001849
Domain	RasGAP_dom	RASA4 RASA4B	1.17e-03	18	53	2	IPR001936
Domain	PH_dom-like	SPTBN5 RASA4 RALGPS1 NBEAL2 OBSCN RASA4B	1.26e-03	426	53	6	IPR011993
Domain	IQ	OBSCN CEP131 CEP97	1.57e-03	81	53	3	SM00015
Domain	IQ_motif_EF-hand-BS	OBSCN CEP131 CEP97	2.13e-03	90	53	3	IPR000048
Domain	IQ	OBSCN CEP131 CEP97	2.34e-03	93	53	3	PS50096
Domain	ZnF_U1	ZFHX4 ZFHX2	3.05e-03	29	53	2	SM00451
Domain	Znf_U1	ZFHX4 ZFHX2	3.05e-03	29	53	2	IPR003604
Domain	-	SPTBN5 RASA4 RALGPS1 OBSCN RASA4B	4.93e-03	391	53	5	2.30.29.30
Pubmed	A census of human transcription factors: function, expression and evolution.	ALX3 HOXA13 OTP PRRX1 ALX1 LHX4 HOXC13 ZFHX4 HOXD13 ARX DRGX ZFHX2 SHOX NOTO LHX3 PAX7 LHX8 PHOX2B HSF4 ALX4 PRRX2	1.04e-19	908	54	21	19274049
Pubmed	Impact of cytosine methylation on DNA binding specificities of human transcription factors.	ALX3 HOXA13 ALX1 LHX4 HOXC13 HOXD13 ARX DRGX SHOX NOTO PAX7 LHX8 PHOX2B HSF4 ALX4 PRRX2	1.26e-16	544	54	16	28473536
Pubmed	Expression patterns of group-I aristaless-related genes during craniofacial and limb development.	ALX3 PRRX1 ALX1 ALX4 PRRX2	4.47e-14	6	54	5	11520673
Pubmed	Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus.	ALX3 HOXA13 OTP PRRX1 ALX1 ZFHX4 ZFHX2 LHX3 PAX7 LHX8 ALX4	2.69e-13	263	54	11	20932939
Pubmed	Alx1 Deficient Mice Recapitulate Craniofacial Phenotype and Reveal Developmental Basis of ALX1-Related Frontonasal Dysplasia.	ALX3 ALX1 PAX7 LHX8 ALX4	3.22e-11	16	54	5	35127681
Pubmed	Pax6 regulates craniofacial form through its control of an essential cephalic ectodermal patterning center.	ALX3 PRRX1 PAX7 ALX4 PRRX2	1.93e-10	22	54	5	21309073
Pubmed	Vertebrate aristaless-related genes.	ALX3 ARX ALX4	3.54e-09	3	54	3	10668975
Pubmed	Alx-4, a transcriptional activator whose expression is restricted to sites of epithelial-mesenchymal interactions.	PRRX1 ALX1 ALX4	1.41e-08	4	54	3	9786416
Pubmed	Genome-wide atlas of gene expression in the adult mouse brain.	ARX PAX7 LHX8 PHOX2B ALX4	2.23e-08	54	54	5	17151600
Pubmed	The LIM-homeodomain protein Lhx2 is required for complete development of mouse olfactory sensory neurons.	ALX3 PRRX1 ALX1 PRRX2	2.47e-08	20	54	4	15173589
Pubmed	Global gene expression analysis of murine limb development.	ALX3 HOXA13 PRRX1 ZFHX4 PAX7 PRRX2	2.88e-08	117	54	6	22174793
Pubmed	Alx3-deficient mice exhibit folic acid-resistant craniofacial midline and neural tube closure defects.	ALX3 ALX1 ALX4	3.53e-08	5	54	3	20534379
Pubmed	Physical and genetic interactions between Alx4 and Cart1.	ALX1 HOXD13 ALX4	3.53e-08	5	54	3	9847249
Pubmed	Mouse Alx3: an aristaless-like homeobox gene expressed during embryogenesis in ectomesenchyme and lateral plate mesoderm.	ALX3 ALX1 PRRX2	7.05e-08	6	54	3	9676189
Pubmed	Single-cell transcriptomic signatures and gene regulatory networks modulated by Wls in mammalian midline facial formation and clefts.	ALX3 ALX1 PAX7 ALX4	8.87e-08	27	54	4	35781558
Pubmed	Prx1 and Prx2 in skeletogenesis: roles in the craniofacial region, inner ear and limbs.	PRRX1 HOXD13 PRRX2	1.23e-07	7	54	3	9729491
Pubmed	TFAP2 paralogs regulate midfacial development in part through a conserved ALX genetic pathway.	ALX3 ALX1 ALX4	1.23e-07	7	54	3	38063857
Pubmed	Prx1 and Prx2 are upstream regulators of sonic hedgehog and control cell proliferation during mandibular arch morphogenesis.	ALX3 PRRX1 PRRX2	1.23e-07	7	54	3	11532916
Pubmed	A role for HOX13 proteins in the regulatory switch between TADs at the HoxD locus.	HOXA13 HOXD13 PRRX2	1.97e-07	8	54	3	27198226
Pubmed	Genetics of shoulder girdle formation: roles of Tbx15 and aristaless-like genes.	ALX3 ALX1 ALX4	2.95e-07	9	54	3	15728667
Pubmed	Progression of vertebrate limb development through SHH-mediated counteraction of GLI3.	HOXA13 HOXD13 ALX4	4.21e-07	10	54	3	12215652
Pubmed	Islet α-, β-, and δ-cell development is controlled by the Ldb1 coregulator, acting primarily with the islet-1 transcription factor.	LHX4 ARX LHX3 LHX8	7.37e-07	45	54	4	23193182
Pubmed	Crucial and Overlapping Roles of Six1 and Six2 in Craniofacial Development.	ALX3 ALX1 ALX4	1.00e-06	13	54	3	30905259
Pubmed	Range of HOX/TALE superclass associations and protein domain requirements for HOXA13:MEIS interaction.	HOXA13 HOXC13 HOXD13	1.27e-06	14	54	3	15617687
Pubmed	Control of pelvic girdle development by genes of the Pbx family and Emx2.	PRRX1 ALX1 ALX4	1.27e-06	14	54	3	21455939
Pubmed	Targeted disruption of the homeobox gene Nkx2.9 reveals a role in development of the spinal accessory nerve.	LHX3 PAX7 PHOX2B	1.27e-06	14	54	3	12571110
Pubmed	Requirement for Twist1 in frontonasal and skull vault development in the mouse embryo.	ALX3 LHX8 ALX4	1.27e-06	14	54	3	19414008
Pubmed	Oral-facial-digital type I protein is required for primary cilia formation and left-right axis specification.	HOXA13 HOXD13 PAX7	1.27e-06	14	54	3	16311594
Pubmed	Conditional inactivation of Fgfr1 in mouse defines its role in limb bud establishment, outgrowth and digit patterning.	HOXA13 HOXD13 ALX4	1.59e-06	15	54	3	16120640
Pubmed	The apical ectodermal ridge is a timer for generating distal limb progenitors.	HOXA13 HOXD13 ALX4	1.59e-06	15	54	3	18359901
Pubmed	Pax6 controls progenitor cell identity and neuronal fate in response to graded Shh signaling.	LHX4 LHX3 PAX7	1.59e-06	15	54	3	9230312
Pubmed	Lbx1 acts as a selector gene in the fate determination of somatosensory and viscerosensory relay neurons in the hindbrain.	DRGX PAX7 PHOX2B	1.59e-06	15	54	3	17475798
Pubmed	Homologs of genes expressed in Caenorhabditis elegans GABAergic neurons are also found in the developing mouse forebrain.	ARX PAX7 PHOX2B ALX4	1.93e-06	57	54	4	21122108
Pubmed	Ablation of Zfhx4 results in early postnatal lethality by disrupting the respiratory center in mice.	ZFHX4 LHX8 PHOX2B	1.95e-06	16	54	3	33475140
Pubmed	Specification of jaw subdivisions by Dlx genes.	PRRX1 ALX4 PRRX2	1.95e-06	16	54	3	12193642
Pubmed	Nipbl and mediator cooperatively regulate gene expression to control limb development.	HOXA13 HOXC13 HOXD13	1.95e-06	16	54	3	25255084
Pubmed	Ciliary and extraciliary Gpr161 pools repress hedgehog signaling in a tissue-specific manner.	HOXD13 PTCH2 PAX7	1.95e-06	16	54	3	34346313
Pubmed	Concerted involvement of Cdx/Hox genes and Wnt signaling in morphogenesis of the caudal neural tube and cloacal derivatives from the posterior growth zone.	HOXA13 HOXC13 HOXD13	1.95e-06	16	54	3	21752936
Pubmed	Ezh2 regulates anteroposterior axis specification and proximodistal axis elongation in the developing limb.	HOXA13 HOXD13 ALX4	1.95e-06	16	54	3	21795281
Pubmed	Identification of a prx1 limb enhancer.	PRRX1 PRRX2	2.37e-06	2	54	2	10748458
Pubmed	Variants Identified in the HOXC13 and HOXD13 Genes Suggest Association with Cervical Cancer in a Cohort of Mexican Women.	HOXC13 HOXD13	2.37e-06	2	54	2	36833285
Pubmed	The Prx1 homeobox gene is critical for molar tooth morphogenesis.	PRRX1 PRRX2	2.37e-06	2	54	2	16998126
Pubmed	Pathophysiology of syndromic combined pituitary hormone deficiency due to a LHX3 defect in light of LHX3 and LHX4 expression during early human development.	LHX4 LHX3	2.37e-06	2	54	2	15567726
Pubmed	Appendage expression driven by the Hoxd Global Control Region is an ancient gnathostome feature.	HOXA13 HOXD13	2.37e-06	2	54	2	21765002
Pubmed	Gene dosage-dependent effects of the Hoxa-13 and Hoxd-13 mutations on morphogenesis of the terminal parts of the digestive and urogenital tracts.	HOXA13 HOXD13	2.37e-06	2	54	2	9428414
Pubmed	Human PRRX1 and PRRX2 genes: cloning, expression, genomic localization, and exclusion as disease genes for Nager syndrome.	PRRX1 PRRX2	2.37e-06	2	54	2	11063257
Pubmed	Comparative analysis of Prx1 and Prx2 expression in mice provides evidence for incomplete compensation.	PRRX1 PRRX2	2.37e-06	2	54	2	11748565
Pubmed	CAPRI regulates Ca(2+)-dependent inactivation of the Ras-MAPK pathway.	RASA4 RASA4B	2.37e-06	2	54	2	11448776
Pubmed	Molecular cloning and expression analysis of the mouse Spot-2 gene in pituitary development.	LHX4 LHX3	2.37e-06	2	54	2	12684778
Pubmed	Hoxa-13 and Hoxd-13 play a crucial role in the patterning of the limb autopod.	HOXA13 HOXD13	2.37e-06	2	54	2	8898214
Pubmed	Investigation of Prx1 protein expression provides evidence for conservation of cardiac-specific posttranscriptional regulation in vertebrates.	PRRX1 PRRX2	2.37e-06	2	54	2	11747080
Pubmed	An essential function for the calcium-promoted Ras inactivator in Fcgamma receptor-mediated phagocytosis.	RASA4 RASA4B	2.37e-06	2	54	2	16041389
Pubmed	Lhx4 surpasses its paralog Lhx3 in promoting the differentiation of spinal V2a interneurons.	LHX4 LHX3	2.37e-06	2	54	2	38970652
Pubmed	Of fingers, toes and penises.	HOXA13 HOXD13	2.37e-06	2	54	2	9363887
Pubmed	Severe digital abnormalities in a patient heterozygous for both a novel missense mutation in HOXD13 and a polyalanine tract expansion in HOXA13.	HOXA13 HOXD13	2.37e-06	2	54	2	12414828
Pubmed	Loss of function of the Prx1 and Prx2 homeobox genes alters architecture of the great elastic arteries and ductus arteriosus.	PRRX1 PRRX2	2.37e-06	2	54	2	10664157
Pubmed	Genomic organization and chromosome localization of the murine homeobox gene Pmx.	PRRX1 LHX4	2.37e-06	2	54	2	7910581
Pubmed	Differential expression of Prx I and II in mouse testis and their up-regulation by radiation.	PRRX1 PRRX2	2.37e-06	2	54	2	12163022
Pubmed	Comparative analysis of genes downstream of the Hoxd cluster in developing digits and external genitalia.	HOXA13 PRRX1 HOXD13	2.37e-06	17	54	3	15944189
Pubmed	Distinct roles of Hand2 in initiating polarity and posterior Shh expression during the onset of mouse limb bud development.	HOXA13 HOXD13 ALX4	2.84e-06	18	54	3	20386744
Pubmed	Regionalized Twist1 activity in the forelimb bud drives the morphogenesis of the proximal and preaxial skeleton.	ALX1 HOXD13 ALX4	2.84e-06	18	54	3	22178153
Pubmed	Requirement for Mab21l2 during development of murine retina and ventral body wall.	ALX3 ALX1 ALX4	3.37e-06	19	54	3	15385160
Pubmed	Cdx and Hox genes differentially regulate posterior axial growth in mammalian embryos.	HOXA13 HOXC13 HOXD13	3.96e-06	20	54	3	19853565
Pubmed	Twist plays an essential role in FGF and SHH signal transduction during mouse limb development.	ALX3 HOXD13 ALX4	4.61e-06	21	54	3	12142027
Pubmed	Independent regulation of vertebral number and vertebral identity by microRNA-196 paralogs.	HOXA13 HOXC13 HOXD13	5.34e-06	22	54	3	26283362
Pubmed	Generation of mice with functional inactivation of talpid3, a gene first identified in chicken.	HOXA13 HOXD13 PAX7	6.13e-06	23	54	3	21750036
Pubmed	Pbx1/Pbx2 requirement for distal limb patterning is mediated by the hierarchical control of Hox gene spatial distribution and Shh expression.	HOXA13 HOXD13 ALX4	6.13e-06	23	54	3	16672333
Pubmed	The high-mobility-group domain of Sox proteins interacts with DNA-binding domains of many transcription factors.	PRRX1 ALX4 PRRX2	7.00e-06	24	54	3	16582099
Pubmed	The formation of the thumb requires direct modulation of Gli3 transcription by Hoxa13.	HOXA13 HOXD13 ALX4	7.00e-06	24	54	3	31896583
Pubmed	Hoxd13 and Hoxa13 directly control the expression of the EphA7 Ephrin tyrosine kinase receptor in developing limbs.	HOXA13 HOXD13	7.09e-06	3	54	2	16314414
Pubmed	Expression and function of the LIM homeobox containing genes Lhx3 and Lhx4 in the mouse placenta.	LHX4 LHX3	7.09e-06	3	54	2	18425848
Pubmed	Exclusion of mutations in TGIF, ALX3, and ALX4 genes in patients with the syndrome of frontonasal dysgenesis, callosal agenesis, basal encephalocele, and eye anomalies.	ALX3 ALX4	7.09e-06	3	54	2	22496059
Pubmed	CD28 inhibits T cell adhesion by recruiting CAPRI to the plasma membrane.	RASA4 RASA4B	7.09e-06	3	54	2	25637021
Pubmed	The mechanosensitive ion channel PIEZO1 promotes satellite cell function in muscle regeneration.	PIEZO1 PAX7	7.09e-06	3	54	2	36446523
Pubmed	Identification of a conserved protein that interacts with specific LIM homeodomain transcription factors.	LHX4 LHX3	7.09e-06	3	54	2	10788441
Pubmed	Comparison of the expression patterns of two LIM-homeodomain genes, Lhx6 and L3/Lhx8, in the developing palate.	LHX3 LHX8	7.09e-06	3	54	2	12086327
Pubmed	Islet1 regulates establishment of the posterior hindlimb field upstream of the Hand2-Shh morphoregulatory gene network in mouse embryos.	PRRX1 HOXD13 ALX4	7.94e-06	25	54	3	22438573
Pubmed	Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis.	ALX3 ALX1 ALX4	7.94e-06	25	54	3	29475039
Pubmed	LIM homeobox transcription factors integrate signaling events that control three-dimensional limb patterning and growth.	LHX4 LHX3 LHX8	7.94e-06	25	54	3	19304889
Pubmed	Maternal genes and facial clefts in offspring: a comprehensive search for genetic associations in two population-based cleft studies from Scandinavia.	ALX3 PRRX1 PTCH2 LHX8 ALX4 PRRX2	1.25e-05	331	54	6	20634891
Pubmed	The human HOX gene family.	HOXA13 HOXC13 HOXD13	1.26e-05	29	54	3	2574852
Pubmed	Anteroposterior Limb Skeletal Patterning Requires the Bifunctional Action of SWI/SNF Chromatin Remodeling Complex in Hedgehog Pathway.	HOXA13 HOXD13 ALX4	1.26e-05	29	54	3	26959361
Pubmed	SMAD4 target genes are part of a transcriptional network that integrates the response to BMP and SHH signaling during early limb bud patterning.	PMVK ALX4 PRRX2	1.26e-05	29	54	3	34822715
Pubmed	A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract.	HOXA13 OTP PRRX1 ZFHX2 PAX7 LHX8 PHOX2B ALX4	1.30e-05	709	54	8	22988430
Pubmed	Loss of Neogenin alters branchial arch development and leads to craniofacial skeletal defects.	ALX3 ALX1 ALX4	1.39e-05	30	54	3	38404688
Pubmed	Developmental expression of the mouse Evx-2 gene: relationship with the evolution of the HOM/Hox complex.	HOXA13 HOXD13	1.42e-05	4	54	2	7579515
Pubmed	Expression patterns of the paired-related homeobox genes MHox/Prx1 and S8/Prx2 suggest roles in development of the heart and the forebrain.	PRRX1 PRRX2	1.42e-05	4	54	2	7577675
Pubmed	Structural basis for partial redundancy in a class of transcription factors, the LIM homeodomain proteins, in neural cell type specification.	LHX4 LHX3	1.42e-05	4	54	2	22025611
Pubmed	Ca2+-dependent monomer and dimer formation switches CAPRI Protein between Ras GTPase-activating protein (GAP) and RapGAP activities.	RASA4 RASA4B	1.42e-05	4	54	2	21460216
Pubmed	Behavioral abnormalities observed in Zfhx2-deficient mice.	ZFHX4 ZFHX2	1.42e-05	4	54	2	23300874
Pubmed	Identification of an alternatively spliced variant of Ca2+-promoted Ras inactivator as a possible regulator of RANKL shedding.	RASA4 RASA4B	1.42e-05	4	54	2	16234249
Pubmed	Hoxa-13 gene mutation results in abnormal seminal vesicle and prostate development.	HOXA13 HOXD13	1.42e-05	4	54	2	10210434
Pubmed	Selection of homeotic proteins for binding to a human DNA replication origin.	HOXA13 HOXC13	1.42e-05	4	54	2	10835276
Pubmed	Embryonic forebrain transcriptome of mice with polyalanine expansion mutations in the ARX homeobox gene.	ALX1 ARX TENM1	1.54e-05	31	54	3	27798109
Pubmed	Three-dimensional molecular architecture of mouse organogenesis.	OTP ALX1 HOXD13 ARX	1.82e-05	100	54	4	37524711
Pubmed	Twist function is required for the morphogenesis of the cephalic neural tube and the differentiation of the cranial neural crest cells in the mouse embryo.	ALX3 ALX1 ALX4	2.05e-05	34	54	3	12086465
Pubmed	Pancreatic β cell identity is maintained by DNA methylation-mediated repression of Arx.	PRMT6 ARX	2.36e-05	5	54	2	21497756
Pubmed	Altered Hox expression and increased cell death distinguish Hypodactyly from Hoxa13 null mice.	HOXA13 HOXD13	2.36e-05	5	54	2	10470645
Pubmed	Piezo1 regulates the regenerative capacity of skeletal muscles via orchestration of stem cell morphological states.	PIEZO1 PAX7	2.36e-05	5	54	2	35302846
Pubmed	A group 13 homeodomain is neither necessary nor sufficient for posterior prevalence in the mouse limb.	HOXA13 HOXD13	2.36e-05	5	54	2	16806154
Interaction	ALX4 interactions	PRRX1 ALX1 HOXD13 ALX4	8.21e-06	48	54	4	int:ALX4
Interaction	PYGO2 interactions	LHX4 LHX3 PAX7 LHX8	8.21e-06	48	54	4	int:PYGO2
Interaction	LDB1 interactions	LHX4 LHX3 PAX7 LHX8 ALX4	1.40e-05	115	54	5	int:LDB1
Interaction	PRRX1 interactions	ALX3 PRRX1 ALX4	1.44e-05	18	54	3	int:PRRX1
Interaction	SSBP4 interactions	LHX4 LHX3 PAX7 LHX8	1.88e-05	59	54	4	int:SSBP4
Interaction	PYGO1 interactions	PRMT6 LHX4 LHX8	5.68e-05	28	54	3	int:PYGO1
Interaction	BCL9 interactions	LHX4 LHX3 PAX7 LHX8	8.31e-05	86	54	4	int:BCL9
Interaction	SOX10 interactions	PRRX1 HSF4 ALX4 PRRX2	1.08e-04	92	54	4	int:SOX10
Interaction	DPF1 interactions	LHX4 LHX3 PAX7 LHX8	1.22e-04	95	54	4	int:DPF1
Interaction	FOXP4 interactions	LHX4 ZFHX4 LHX3 PAX7	1.38e-04	98	54	4	int:FOXP4
Interaction	FOXN1 interactions	HOXC13 HOXD13 LHX8	1.67e-04	40	54	3	int:FOXN1
Interaction	ISL2 interactions	LHX4 LHX3 LHX8	1.80e-04	41	54	3	int:ISL2
Cytoband	Ensembl 112 genes in cytogenetic band chr9q34	C9orf50 LHX3 FUT7 PRRX2	5.90e-04	325	54	4	chr9q34
Cytoband	Ensembl 112 genes in cytogenetic band chr1p13	ALX3 PRMT6 IGSF3	2.00e-03	211	54	3	chr1p13
GeneFamily	PRD class homeoboxes and pseudogenes	ALX3 OTP PRRX1 ALX1 ARX DRGX SHOX PAX7 PHOX2B ALX4 PRRX2	3.43e-17	92	38	11	521
GeneFamily	LIM class homeoboxes	LHX4 LHX3 LHX8	1.86e-06	12	38	3	522
GeneFamily	HOXL subclass homeoboxes	HOXA13 HOXC13 HOXD13	1.76e-04	52	38	3	518
GeneFamily	Pleckstrin homology domain containing\|SH2 domain containing\|C2 and RasGAP domain containing	RASA4 RASA4B	1.92e-04	10	38	2	830
GeneFamily	Zinc fingers C2H2-type\|ZF class homeoboxes and pseudogenes	ZFHX4 ZFHX2	4.44e-04	15	38	2	529
Coexpression	MEISSNER_BRAIN_HCP_WITH_H3K27ME3	ALX3 HOXA13 OTP ALX1 HOXC13 HOXD13 DRGX LHX3 PAX7 LHX8 ALX4 PRRX2	2.85e-13	272	54	12	M1938
Coexpression	MEISSNER_BRAIN_HCP_WITH_H3K27ME3	ALX3 HOXA13 OTP ALX1 HOXC13 HOXD13 DRGX LHX3 PAX7 LHX8 ALX4 PRRX2	4.37e-13	282	54	12	MM822
Coexpression	BENPORATH_EED_TARGETS	ALX3 HOXA13 OTP ALX1 LHX4 HOXC13 HOXD13 SHOX PAX7 LHX8 PHOX2B HSF4 ALX4	1.69e-07	1059	54	13	M7617
Coexpression	MEISSNER_NPC_HCP_WITH_H3K27ME3	ALX3 OTP ALX1 HOXC13 PAX7	6.16e-07	79	54	5	M1932
Coexpression	MEISSNER_NPC_HCP_WITH_H3K27ME3	ALX3 OTP ALX1 HOXC13 PAX7	6.56e-07	80	54	5	MM817
Coexpression	BENPORATH_PRC2_TARGETS	ALX3 OTP LHX4 HOXD13 SHOX PAX7 LHX8 PHOX2B HSF4 ALX4	7.35e-07	650	54	10	M8448
Coexpression	BENPORATH_SUZ12_TARGETS	ALX3 OTP ALX1 LHX4 HOXC13 HOXD13 SHOX PAX7 LHX8 PHOX2B HSF4 ALX4	9.98e-07	1035	54	12	M9898
Coexpression	BENPORATH_ES_WITH_H3K27ME3	ALX3 HOXA13 OTP LHX4 HOXD13 SHOX LHX3 PAX7 LHX8 PHOX2B HSF4 ALX4	2.17e-06	1115	54	12	M10371
Coexpression	GRESHOCK_CANCER_COPY_NUMBER_UP	HOXA13 PRRX1 HOXC13 HOXD13 PAX7 PHOX2B SPECC1	4.36e-06	323	54	7	M9150
Coexpression	MIKKELSEN_NPC_HCP_WITH_H3K27ME3	ALX3 HOXA13 OTP ALX1 HOXC13 PAX7 LHX8	6.71e-06	345	54	7	M2009
Coexpression	MIKKELSEN_NPC_HCP_WITH_H3K27ME3	ALX3 HOXA13 OTP ALX1 HOXC13 PAX7 LHX8	6.96e-06	347	54	7	MM860
Coexpression	DESCARTES_ORGANOGENESIS_CHONDROCYTES_AND_OSTEOBLASTS	ALX1 ZFHX4 ALX4	2.61e-05	28	54	3	MM3665
Coexpression	DESCARTES_ORGANOGENESIS_LIMB_MESENCHYME	HOXA13 HOXD13 PRRX2	4.32e-05	33	54	3	MM3669
Coexpression	DESCARTES_FETAL_CEREBRUM_INHIBITORY_NEURONS	ARX SHOX LHX8	1.34e-04	48	54	3	M40173
Coexpression	MIKKELSEN_MEF_HCP_WITH_H3K27ME3	OTP ALX1 HOXC13 AARD LHX3 PAX7 PHOX2B	2.02e-04	591	54	7	M2019
Coexpression	MIKKELSEN_MEF_HCP_WITH_H3K27ME3	OTP ALX1 HOXC13 AARD LHX3 PAX7 PHOX2B	2.24e-04	601	54	7	MM866
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle_emap-6706_k-means-cluster#5_top-relative-expression-ranked_500	ALX3 HOXA13 PRRX1 ALX1 HOXC13 ZFHX4 HOXD13 TENM1 LHX8 PRRX2	1.10e-10	217	52	10	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle_500_k5
CoexpressionAtlas	e10.5_Emin_MedialNasal_top-relative-expression-ranked_100	ALX3 PRRX1 ALX1 MMP23B C9orf50 LHX8 PRRX2	3.00e-10	68	52	7	Facebase_ST1_e10.5_Emin_MedialNasal_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle_emap-6706_k-means-cluster#2_top-relative-expression-ranked_1000	ALX3 HOXA13 PRRX1 ALX1 HOXC13 ZFHX4 HOXD13 TENM1 LHX8 IGSF3 PRRX2	1.50e-09	377	52	11	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle_1000_k2
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_k-means-cluster#4_top-relative-expression-ranked_100	HOXA13 ZFHX4 HOXD13 LHX8 PHOX2B	3.70e-09	25	52	5	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_k4_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle_emap-6706_k-means-cluster#2_top-relative-expression-ranked_200	ALX3 HOXA13 PRRX1 ZFHX4 HOXD13 LHX8	3.78e-09	54	52	6	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle_200_k2
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle_emap-6706_top-relative-expression-ranked_200	ALX3 HOXA13 PRRX1 ALX1 ZFHX4 HOXD13 LHX8 PRRX2	4.26e-09	157	52	8	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle_200
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_emap-3087_k-means-cluster#3_top-relative-expression-ranked_500	ALX3 PRRX1 ZFHX4 HOXD13 TENM1 LHX8 IGSF3	5.75e-09	103	52	7	gudmap_developingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_500_k3
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_top-relative-expression-ranked_200	ALX3 HOXA13 PRRX1 ALX1 ZFHX4 HOXD13 LHX8 IGSF3	7.62e-09	169	52	8	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_200
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle_emap-6706_k-means-cluster#4_top-relative-expression-ranked_100	ALX3 PRRX1 ALX1 ZFHX4 LHX8	1.38e-08	32	52	5	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle_100_k4
CoexpressionAtlas	e10.5_Emin_MedialNasal_top-relative-expression-ranked_250	ALX3 PRRX1 ALX1 MMP23B C9orf50 LHX8 PRRX2	2.10e-08	124	52	7	Facebase_ST1_e10.5_Emin_MedialNasal_250
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_emap-3087_k-means-cluster#5_top-relative-expression-ranked_200	ALX3 PRRX1 ZFHX4 HOXD13 LHX8	2.97e-08	37	52	5	gudmap_developingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_200_k5
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle_emap-6706_top-relative-expression-ranked_500	ALX3 HOXA13 PRRX1 ALX1 HOXC13 ZFHX4 HOXD13 TENM1 LHX8 PRRX2	3.10e-08	390	52	10	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle_500
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle_emap-6706_top-relative-expression-ranked_100	ALX3 PRRX1 ALX1 ZFHX4 HOXD13 LHX8	3.60e-08	78	52	6	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30892_k-means-cluster#2_top-relative-expression-ranked_500	HOXA13 PRRX1 ZFHX4 HOXD13 LHX8 PHOX2B PRRX2	4.19e-08	137	52	7	gudmap_developingLowerUrinaryTract_e14.5_ urethra_500_k2
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30892_k-means-cluster#3_top-relative-expression-ranked_100	PRRX1 ZFHX4 HOXD13 LHX8	5.69e-08	16	52	4	gudmap_developingLowerUrinaryTract_e14.5_ urethra_100_k3
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_top-relative-expression-ranked_100	ALX3 HOXA13 PRRX1 ZFHX4 HOXD13 LHX8	6.04e-08	85	52	6	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_top-relative-expression-ranked_500	ALX3 HOXA13 PRRX1 ALX1 ZFHX4 HOXD13 TENM1 LHX8 IGSF3 PRRX2	7.40e-08	428	52	10	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_500
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_top-relative-expression-ranked_500	ALX3 HOXA13 PRRX1 ALX1 ZFHX4 HOXD13 TENM1 LHX8 PHOX2B IGSF3	7.57e-08	429	52	10	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_500
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_top-relative-expression-ranked_100	HOXA13 PRRX1 ZFHX4 HOXD13 LHX8 PHOX2B	7.97e-08	89	52	6	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_emap-3087_k-means-cluster#1_top-relative-expression-ranked_1000	ALX3 PRRX1 ZFHX4 HOXD13 TENM1 LHX8 IGSF3 PRRX2	8.10e-08	229	52	8	gudmap_developingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_1000_k1
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_emap-3087_top-relative-expression-ranked_100	ALX3 HOXA13 ZFHX4 HOXD13 LHX8 PHOX2B	9.11e-08	91	52	6	gudmap_developingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30892_k-means-cluster#3_top-relative-expression-ranked_1000	HOXA13 PRRX1 ZFHX4 HOXD13 LHX8 PHOX2B IGSF3 PRRX2	1.28e-07	243	52	8	gudmap_developingLowerUrinaryTract_e14.5_ urethra_1000_k3
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_emap-3087_top-relative-expression-ranked_200	ALX3 HOXA13 PRRX1 ZFHX4 HOXD13 LHX8 PHOX2B	1.63e-07	167	52	7	gudmap_developingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_200
CoexpressionAtlas	FacebaseRNAseq_e9.5_Facial Mesenchyne_top-relative-expression-ranked_1000_k-means-cluster#3	PRRX1 ALX1 ZFHX4 RASA4 MMP23B ABCB6 PAX7 LHX8 ALX4	3.49e-07	384	52	9	Facebase_RNAseq_e9.5_Facial Mesenchyne_1000_K3
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_emap-3087_k-means-cluster#1_top-relative-expression-ranked_100	ALX3 ZFHX4 HOXD13 LHX8	4.59e-07	26	52	4	gudmap_developingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_100_k1
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_k-means-cluster#4_top-relative-expression-ranked_500	ALX3 PRRX1 ZFHX4 HOXD13 LHX8	6.23e-07	67	52	5	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_k4_500
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_k-means-cluster#4_top-relative-expression-ranked_200	PRRX1 ZFHX4 HOXD13 LHX8	6.27e-07	28	52	4	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_k4_200
CoexpressionAtlas	e10.5_Emin_MedialNasal_top-relative-expression-ranked_500	ALX3 PRRX1 ALX1 KANK3 MMP23B C9orf50 LHX8 PRRX2	6.34e-07	300	52	8	Facebase_ST1_e10.5_Emin_MedialNasal_500
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_emap-3087_top-relative-expression-ranked_500	ALX3 HOXA13 PRRX1 ZFHX4 HOXD13 TENM1 LHX8 PHOX2B IGSF3	7.98e-07	424	52	9	gudmap_developingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_500
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_k-means-cluster#4_top-relative-expression-ranked_1000	ALX3 PRRX1 ZFHX4 HOXD13 LHX8 IGSF3	1.56e-06	147	52	6	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_k4_1000
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle_emap-6706_top-relative-expression-ranked_1000	ALX3 HOXA13 PRRX1 ALX1 HOXC13 ZFHX4 HOXD13 TENM1 LHX8 IGSF3 PRRX2	2.04e-06	769	52	11	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle_1000
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30892_top-relative-expression-ranked_100	HOXA13 PRRX1 ZFHX4 HOXD13 LHX8	2.17e-06	86	52	5	gudmap_developingLowerUrinaryTract_e14.5_ urethra_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_top-relative-expression-ranked_100	HOXA13 PRRX1 ZFHX4 HOXD13 PHOX2B	2.57e-06	89	52	5	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_P1_bladder_J_emap-30374_k-means-cluster#4_top-relative-expression-ranked_1000	HOXA13 PRRX1 ZFHX4 HOXD13 PHOX2B	2.72e-06	90	52	5	gudmap_developingLowerUrinaryTract_P1_bladder_J_1000_k4
CoexpressionAtlas	JC_fibro_top-relative-expression-ranked_500	ALX3 HOXA13 PRRX1 HOXC13 AARD SHOX ATP8B1 ALX4 PRRX2	2.81e-06	494	52	9	JC_fibro_500
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_top-relative-expression-ranked_100	ALX3 PRRX1 ZFHX4 HOXD13 LHX8	3.03e-06	92	52	5	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_top-relative-expression-ranked_200	HOXA13 PRRX1 ZFHX4 HOXD13 LHX8 PHOX2B	3.62e-06	170	52	6	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_200
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_emap-3087_top-relative-expression-ranked_1000	ALX3 HOXA13 PRRX1 ZFHX4 HOXD13 DRGX TENM1 LHX8 PHOX2B IGSF3 PRRX2	4.10e-06	827	52	11	gudmap_developingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_1000
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_top-relative-expression-ranked_200	ALX3 HOXA13 PRRX1 ZFHX4 HOXD13 LHX8	4.28e-06	175	52	6	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_200
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_top-relative-expression-ranked_1000	ALX3 HOXA13 PRRX1 ALX1 ZFHX4 HOXD13 TENM1 PAX7 LHX8 PHOX2B IGSF3	4.54e-06	836	52	11	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_1000
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ bladder_emap-6668_k-means-cluster#4_top-relative-expression-ranked_200	HOXA13 ZFHX4 HOXD13 PHOX2B	4.84e-06	46	52	4	DevelopingLowerUrinaryTract_e14.5_ bladder_emap-6668_k4_200
CoexpressionAtlas	DevelopingLowerUrinaryTract_P2_bladder detrusor (LCM)_emap-30376_k-means-cluster#4_top-relative-expression-ranked_1000	HOXA13 ZFHX4 HOXD13 PHOX2B	5.74e-06	48	52	4	gudmap_developingLowerUrinaryTract_P2_bladder detrusor (LCM)_1000_k4
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30892_k-means-cluster#2_top-relative-expression-ranked_200	HOXA13 ZFHX4 HOXD13 LHX8	8.57e-06	53	52	4	gudmap_developingLowerUrinaryTract_e14.5_ urethra_200_k2
CoexpressionAtlas	DevelopingKidney_e11.5_metaneph mesench_emap-3843_k-means-cluster#5_top-relative-expression-ranked_1000	ALX3 PRRX1 ALX1 HOXD13 PHOX2B	8.68e-06	114	52	5	gudmap_developingKidney_e11.5_metaneph mesench_1000_k5
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_k-means-cluster#4_top-relative-expression-ranked_100	HOXA13 ZFHX4 HOXD13	9.19e-06	17	52	3	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_k4_100
CoexpressionAtlas	e10.5_Emin_LateralNasal_top-relative-expression-ranked_500	ALX3 PRRX1 ALX1 KANK3 C9orf50 LHX8 PRRX2	1.60e-05	333	52	7	Facebase_ST1_e10.5_Emin_LateralNasal_500
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ bladder_emap-6668_k-means-cluster#2_top-relative-expression-ranked_500	HOXA13 ZFHX4 HOXD13 PHOX2B IGSF3	1.77e-05	132	52	5	DevelopingLowerUrinaryTract_e14.5_ bladder_emap-6668_k2_500
CoexpressionAtlas	FacebaseRNAseq_e9.5_Facial Mesenchyne_top-relative-expression-ranked_1000	ALX3 PRRX1 ALX1 ZFHX4 RASA4 MMP23B ABCB6 PAX7 LHX8 CTSO ALX4	1.81e-05	968	52	11	Facebase_RNAseq_e9.5_Facial Mesenchyne_1000
CoexpressionAtlas	JC_fibro_top-relative-expression-ranked_1000	ALX3 HOXA13 PRRX1 HOXC13 AARD HOXD13 SHOX ATP8B1 HSF4 ALX4 PRRX2	2.23e-05	990	52	11	JC_fibro_1000
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ bladder_emap-6668_k-means-cluster#4_top-relative-expression-ranked_100	HOXA13 HOXD13 PHOX2B	2.37e-05	23	52	3	DevelopingLowerUrinaryTract_e14.5_ bladder_emap-6668_k4_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ bladder_emap-30872_k-means-cluster#5_top-relative-expression-ranked_500	HOXA13 ZFHX4 HOXD13 IGSF3	2.60e-05	70	52	4	gudmap_developingLowerUrinaryTract_e14.5_ bladder_500_k5
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_k-means-cluster#2_top-relative-expression-ranked_500	ALX3 ALX1 ZFHX4 HOXD13	2.91e-05	72	52	4	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_500_k2
CoexpressionAtlas	e10.5_Emin_LateralNasal_top-relative-expression-ranked_100	ALX3 PRRX1 ALX1 PRRX2	3.24e-05	74	52	4	Facebase_ST1_e10.5_Emin_LateralNasal_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_k-means-cluster#4_top-relative-expression-ranked_500	ALX3 ALX1 ZFHX4 PRRX2	3.42e-05	75	52	4	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_500_k4
CoexpressionAtlas	DevelopingKidney_e11.5_metaneph mesench_emap-3843_top-relative-expression-ranked_1000	ALX3 PRMT6 PRRX1 ALX1 HOXD13 CEP131 PHOX2B SPECC1 CEP97 DHX30	3.44e-05	850	52	10	gudmap_developingKidney_e11.5_metaneph mesench_1000
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_top-relative-expression-ranked_1000	ALX3 HOXA13 PRRX1 ALX1 ZFHX4 HOXD13 TENM1 LHX8 IGSF3 PRRX2	3.44e-05	850	52	10	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_1000
CoexpressionAtlas	FacebaseRNAseq_e10.5_Medial Nasal Eminence_top-relative-expression-ranked_500_k-means-cluster#5	ALX3 ALX1 PAX7	3.46e-05	26	52	3	Facebase_RNAseq_e10.5_Medial Nasal Eminence_500_K5
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30892_top-relative-expression-ranked_200	HOXA13 PRRX1 ZFHX4 HOXD13 LHX8	5.16e-05	165	52	5	gudmap_developingLowerUrinaryTract_e14.5_ urethra_200
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-5517_top-relative-expression-ranked_200	HOXA13 PRRX1 ZFHX4 HOXD13 PHOX2B	5.31e-05	166	52	5	gudmap_developingLowerUrinaryTract_e14.5_ urogenital sinus_200
CoexpressionAtlas	e10.5_Emin_LateralNasal_top-relative-expression-ranked_250	ALX3 PRRX1 ALX1 C9orf50 PRRX2	5.31e-05	166	52	5	Facebase_ST1_e10.5_Emin_LateralNasal_250
CoexpressionAtlas	FacebaseRNAseq_e10.5_Maxillary Arch_top-relative-expression-ranked_500_k-means-cluster#5	ALX3 ALX1 ZFHX4	5.37e-05	30	52	3	Facebase_RNAseq_e10.5_Maxillary Arch_500_K5
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30892_top-relative-expression-ranked_500	HOXA13 PRRX1 ZFHX4 HOXD13 LHX8 PHOX2B PRRX2	5.74e-05	407	52	7	gudmap_developingLowerUrinaryTract_e14.5_ urethra_500
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_top-relative-expression-ranked_500	ALX3 HOXA13 PRRX1 ZFHX4 HOXD13 LHX8 PHOX2B	5.83e-05	408	52	7	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_500
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_k-means-cluster#4_top-relative-expression-ranked_500	PRRX1 ZFHX4 HOXD13 TENM1	5.85e-05	86	52	4	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_k4_500
CoexpressionAtlas	JC_fibro_top-relative-expression-ranked_1000_k-means-cluster#4	ALX3 HOXA13 HOXC13 AARD SHOX	7.01e-05	176	52	5	JC_fibro_1000_K4
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_k-means-cluster#5_top-relative-expression-ranked_200	PRRX1 ZFHX4 LHX8 IGSF3	7.30e-05	91	52	4	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_200_k5
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_top-relative-expression-ranked_200	HOXA13 PRRX1 ZFHX4 HOXD13 PHOX2B	7.39e-05	178	52	5	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_200
CoexpressionAtlas	DevelopingLowerUrinaryTract_e15.5_ureteral tissue_emap-8234_k-means-cluster#3_top-relative-expression-ranked_1000	PRRX1 ALX1 ZFHX4 HOXD13	7.62e-05	92	52	4	gudmap_developingLowerUrinaryTract_e15.5_ureteral tissue_1000_k3
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_k-means-cluster#1_top-relative-expression-ranked_200	HOXA13 HOXD13 LHX8	9.34e-05	36	52	3	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_200_k1
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_k-means-cluster#3_top-relative-expression-ranked_1000	ALX3 ALX1 ZFHX4 PRRX2	9.74e-05	98	52	4	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_1000_k3
CoexpressionAtlas	FacebaseRNAseq_e10.5_Lateral Nasal Eminence_top-relative-expression-ranked_100	ALX3 ALX1 ZFHX4 PAX7	1.01e-04	99	52	4	Facebase_RNAseq_e10.5_Lateral Nasal Eminence_100
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_k-means-cluster#3_top-relative-expression-ranked_200	ALX3 ALX1 ZFHX4	1.01e-04	37	52	3	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_200_k3
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder mesenchyme_emap-3087_k-means-cluster#4_top-relative-expression-ranked_200	HOXA13 ZFHX4 HOXD13	1.01e-04	37	52	3	gudmap_developingLowerUrinaryTract_e13.5_bladder mesenchyme_200_k4
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_k-means-cluster#1_top-relative-expression-ranked_1000	HOXA13 PRRX1 HOXD13 TENM1 LHX8	1.08e-04	193	52	5	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_1000_k1
CoexpressionAtlas	DevelopingKidney_e15.5_Ureteral Smooth Musc_emap-28812_k-means-cluster#4_top-relative-expression-ranked_1000	PRRX1 ALX1 ZFHX4 HOXD13 IGSF3	1.14e-04	195	52	5	gudmap_developingKidney_e15.5_Ureteral Smooth Musc_1000_k4
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_k-means-cluster#3_top-relative-expression-ranked_1000	PRRX1 ZFHX4 HOXD13 TENM1 LHX8	1.16e-04	196	52	5	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_k3_1000
CoexpressionAtlas	Progenitor-Cell-Biology-Consortium_EmbryoidBody_fromBlastocyst-derived-humanEmbryonicStemCells_top-relative-expression-ranked_1000	ALX3 HOXA13 PRRX1 ALX1 ZFHX4 SHOX LHX8 PHOX2B ALX4 PRRX2	1.25e-04	992	52	10	PCBC_EB_blastocyst_1000
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_top-relative-expression-ranked_1000	ALX3 HOXA13 PRRX1 ZFHX4 HOXD13 ATP8B1 LHX8 PHOX2B IGSF3	1.33e-04	806	52	9	DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_1000
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_k-means-cluster#1_top-relative-expression-ranked_100	PRRX1 ZFHX4 LHX8	1.38e-04	41	52	3	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_100_k1
CoexpressionAtlas	JC_fibro_top-relative-expression-ranked_2500_k-means-cluster#5	ALX3 HOXA13 PRRX1 HOXC13 AARD SHOX ATP8B1 ALX4 PRRX2	1.43e-04	814	52	9	JC_fibro_2500_K5
CoexpressionAtlas	JC_fibro_top-relative-expression-ranked_500_k-means-cluster#3	ALX3 PRRX1 ATP8B1 ALX4 PRRX2	1.47e-04	206	52	5	JC_fibro_500_K3
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder mesenchyme_emap-3087_k-means-cluster#1_top-relative-expression-ranked_500	ZFHX4 HOXD13 SPECC1 IGSF3	1.75e-04	114	52	4	gudmap_developingLowerUrinaryTract_e13.5_bladder mesenchyme_500_k1
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder mesenchyme_emap-3087_k-means-cluster#4_top-relative-expression-ranked_1000	HOXA13 ZFHX4 HOXD13 PHOX2B IGSF3	1.75e-04	214	52	5	gudmap_developingLowerUrinaryTract_e13.5_bladder mesenchyme_1000_k4
CoexpressionAtlas	FacebaseRNAseq_e10.5_Maxillary Arch_top-relative-expression-ranked_2500_k-means-cluster#4	ALX3 PRRX1 ALX1 ZFHX4 RASA4 MMP23B LHX8 DHX30	1.78e-04	655	52	8	Facebase_RNAseq_e10.5_Maxillary Arch_2500_K4
CoexpressionAtlas	DevelopingLowerUrinaryTract_P2_bladder stroma (LCM)_emap-30396_k-means-cluster#4_top-relative-expression-ranked_1000	ZFHX4 HOXD13 PHOX2B	1.95e-04	46	52	3	gudmap_developingLowerUrinaryTract_P2_bladder stroma (LCM)_1000_k4
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_k-means-cluster#3_top-relative-expression-ranked_1000	ALX3 PRRX1 ALX1 ZFHX4	2.00e-04	118	52	4	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_1000_k3
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ bladder_emap-6668_k-means-cluster#1_top-relative-expression-ranked_1000	HOXA13 ZFHX4 HOXD13 TENM1 PHOX2B IGSF3	2.03e-04	349	52	6	DevelopingLowerUrinaryTract_e14.5_ bladder_emap-6668_k1_1000
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-5517_k-means-cluster#4_top-relative-expression-ranked_100	ZFHX4 HOXD13	2.61e-04	10	52	2	gudmap_developingLowerUrinaryTract_e14.5_ urogenital sinus_100_k4
CoexpressionAtlas	DevelopingLowerUrinaryTract_P1_bladder_J_emap-30374_k-means-cluster#4_top-relative-expression-ranked_200	HOXD13 PHOX2B	2.61e-04	10	52	2	gudmap_developingLowerUrinaryTract_P1_bladder_J_200_k4
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_k-means-cluster#3_top-relative-expression-ranked_100	HOXA13 HOXD13	2.61e-04	10	52	2	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_100_k3
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_k-means-cluster#4_top-relative-expression-ranked_200	ALX3 PRRX1 ZFHX4	2.81e-04	52	52	3	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_200_k4
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_k-means-cluster#1_top-relative-expression-ranked_100	ALX3 PRRX1 ZFHX4	2.98e-04	53	52	3	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_100_k1
CoexpressionAtlas	Ectoderm Differentiated Cells-method_mRNA_vs_Ectoderm Differentiated Cells-method_NA-Confounder_removed-fold2.0_adjp0.05	RASA4 ARX RASA4B	3.32e-04	55	52	3	PCBC_ratio_ECTO_from-mRNA_vs_ECTO_from-ESC_cfr-2X-p05
CoexpressionAtlas	Ectoderm Differentiated Cells-reprogram_OSKM-L_vs_Ectoderm Differentiated Cells-reprogram_NA-Confounder_removed-fold2.0_adjp0.05	RASA4 ARX RASA4B	3.32e-04	55	52	3	PCBC_ratio_ECTO_from-OSKM-L_vs_ECTO_from-ESC_cfr-2X-p05
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_k-means-cluster#4_top-relative-expression-ranked_500	PRRX1 ZFHX4 TENM1 LHX8 IGSF3	3.40e-04	247	52	5	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_500_k4
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_k-means-cluster#3_top-relative-expression-ranked_500	PRRX1 ZFHX4 TENM1 LHX8 IGSF3	3.53e-04	249	52	5	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_500_k3
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ bladder_emap-30872_k-means-cluster#3_top-relative-expression-ranked_1000	HOXA13 ZFHX4 HOXD13 IGSF3	3.63e-04	138	52	4	gudmap_developingLowerUrinaryTract_e14.5_ bladder_1000_k3
CoexpressionAtlas	FacebaseRNAseq_e8.5_Paraxial Mesoderm_top-relative-expression-ranked_2500_k-means-cluster#4	PRRX1 ZFHX4 MMP23B ABCB6 LHX8 ALX4 IGSF3 DOP1A	3.74e-04	731	52	8	Facebase_RNAseq_e8.5_Paraxial Mesoderm_2500_K4
CoexpressionAtlas	FacebaseRNAseq_ratio_e9.5_MandibularArch_vs_MaxillaryArch_top-relative-expression-ranked_2500_k-means-cluster#5	PRRX1 ZFHX4 MMP23B ABCB6 LHX8 ALX4 IGSF3 DOP1A	3.84e-04	734	52	8	Facebase_RNAseq_ratio_e9.5_MandibularArch_vs_MaxillaryArch_2500_K5
CoexpressionAtlas	FacebaseRNAseq_e10.5_Medial Nasal Eminence_top-relative-expression-ranked_2500_k-means-cluster#4	PRRX1 ALX1 ZFHX4 MMP23B ABCB6 PAX7 LHX8 DOP1A	4.21e-04	744	52	8	Facebase_RNAseq_e10.5_Medial Nasal Eminence_2500_K4
ToppCell	Substantia_nigra-Neuronal-Inhibitory-iN1(Gad1Gad2_Th)-Nfib-Inhibitory_Neuron.Gad1Gad2.Nfib-Satb1_(Supramammillary_Nucleus_(SuM))\|Substantia_nigra / BrainAtlas - Mouse McCarroll V32	SPTBN5 OTP DRGX PAX7	1.26e-06	66	54	4	f7d1d272ae723d8100b8c252b3d894dae5297fe4
ToppCell	Substantia_nigra-Neuronal-Inhibitory-iN1(Gad1Gad2_Th)-Nfib\|Substantia_nigra / BrainAtlas - Mouse McCarroll V32	SPTBN5 OTP DRGX PAX7	1.26e-06	66	54	4	2180e189dad1347ad77733ea95a934d70be97ee4
ToppCell	Substantia_nigra-Neuronal-Inhibitory-iN1(Gad1Gad2_Th)-Nfib-Inhibitory_Neuron.Gad1Gad2.Nfib-Satb1_(Supramammillary_Nucleus_(SuM))-\|Substantia_nigra / BrainAtlas - Mouse McCarroll V32	SPTBN5 OTP DRGX PAX7	1.26e-06	66	54	4	412c95c708344fd1726351389bb8a3d376f54fe4
ToppCell	facs-Skin-nan-24m-Mesenchymal\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 ZFHX4 MMP23B LHX8 PRRX2	2.99e-06	185	54	5	8433a337625ff8398520e223ef92bf9bb0beb14c
ToppCell	facs-Skin-nan-24m-Mesenchymal-fibroblast\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 ZFHX4 MMP23B LHX8 PRRX2	2.99e-06	185	54	5	049d793d043d5d434f143025de49dd210d18756c
ToppCell	facs-Skin-nan-24m-Mesenchymal-nan\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 ZFHX4 MMP23B LHX8 PRRX2	2.99e-06	185	54	5	63200c42565eea596f9b00728e70e544b8d50a7f
ToppCell	wk_08-11-Mesenchymal-Fibroblast-Mesenchymal_3\|wk_08-11 / Celltypes from embryonic and fetal-stage human lung	ALX3 PRRX1 ALX1 ZFHX4 ALX4	3.59e-06	192	54	5	d88753b200d9c8da6716222d697ddf0a1548d6c8
ToppCell	Thalamus-Endothelial-ENDOTHELIAL_TIP-Dcn_1-Dcn_1_1-Dcn-Endothelial_Tip.Dcn.Nenf_(Nenf)\|Thalamus / BrainAtlas - Mouse McCarroll V32	ALX3 MMP23B ALX4 PRRX2	1.12e-05	114	54	4	7be16e7f7b9c9dbd68933ace3b7f8f661bed41a7
ToppCell	Thalamus-Endothelial-ENDOTHELIAL_TIP-Dcn_1-Dcn_1_1-Dcn\|Thalamus / BrainAtlas - Mouse McCarroll V32	ALX3 MMP23B ALX4 PRRX2	1.12e-05	114	54	4	f4bdfc47418d22a49e0c4a6c3bd0663e15fb53bb
ToppCell	TCGA-Brain-Recurrent_Tumor-Low_Grade_Glioma-Oligodendroglioma\|TCGA-Brain / Sample_Type by Project: Shred V9	LHX4 NOTO PAX7 ALX4	2.00e-05	132	54	4	6a6718582edfc59c63f2c8f753be81e0f4a7246b
ToppCell	Globus_pallidus-Endothelial-ENDOTHELIAL_TIP-Dcn_1-Dcn_1_1\|Globus_pallidus / BrainAtlas - Mouse McCarroll V32	ALX3 MMP23B ALX4 PRRX2	2.00e-05	132	54	4	560e836764ed7806fb18282dfebe434d30112a9a
ToppCell	Globus_pallidus-Endothelial-MURAL-M1(Rgs5Acta2)-M1_3-MURAL_Mural.Rgs5Acta2.Pappa2_(Mural.Rgs5Acta2.Pappa2)\|Globus_pallidus / BrainAtlas - Mouse McCarroll V32	ALX1 PTCH2 ZC2HC1C ALX4	2.59e-05	141	54	4	a32947b13e888850c979a54c137512e4b96d2f36
ToppCell	Globus_pallidus-Endothelial-MURAL-M1(Rgs5Acta2)-M1_3-MURAL_Mural.Rgs5Acta2.Pappa2_(Mural.Rgs5Acta2.Pappa2)-\|Globus_pallidus / BrainAtlas - Mouse McCarroll V32	ALX1 PTCH2 ZC2HC1C ALX4	2.59e-05	141	54	4	2cb651d63466fdcce011d1dd8de409ef439d03e7
ToppCell	Frontal_cortex-Neuronal-Inhibitory-iN1(Gad1Gad2_Th)\|Frontal_cortex / BrainAtlas - Mouse McCarroll V32	ARX C9orf50 FUT7 HSF4	2.89e-05	145	54	4	8b13b576fd2e6e33ccb146860a91a53cee0cdd4d
ToppCell	Thalamus-Endothelial-ENDOTHELIAL_TIP-Dcn_1\|Thalamus / BrainAtlas - Mouse McCarroll V32	ALX3 MMP23B ALX4 PRRX2	3.56e-05	153	54	4	e9c6fb5c41adb6595c66c3a917fe455348279e54
ToppCell	Thalamus-Endothelial-ENDOTHELIAL_TIP-Dcn_1-Dcn_1_1\|Thalamus / BrainAtlas - Mouse McCarroll V32	ALX3 MMP23B ALX4 PRRX2	3.56e-05	153	54	4	b8b5ff7d2feea3e3a352fb5530e49f639fe1ff88
ToppCell	Thalamus-Endothelial-ENDOTHELIAL_TIP\|Thalamus / BrainAtlas - Mouse McCarroll V32	ALX3 MMP23B ALX4 PRRX2	3.56e-05	153	54	4	2513edfae62a44e51d3556675a096723194c966c
ToppCell	Hippocampus-Endothelial-ENDOTHELIAL_TIP-Dcn_1\|Hippocampus / BrainAtlas - Mouse McCarroll V32	ALX3 MMP23B ALX4 PRRX2	4.14e-05	159	54	4	92049a8d8fc9997d8d0d76500c72596a9b2394e0
ToppCell	Globus_pallidus-Endothelial-ENDOTHELIAL_TIP-Dcn_1\|Globus_pallidus / BrainAtlas - Mouse McCarroll V32	ALX3 MMP23B ALX4 PRRX2	4.78e-05	165	54	4	570483b43ccb5831feec9337b4664814431d40b1
ToppCell	Globus_pallidus-Endothelial-ENDOTHELIAL_TIP\|Globus_pallidus / BrainAtlas - Mouse McCarroll V32	ALX3 MMP23B ALX4 PRRX2	4.78e-05	165	54	4	2026a9a07f4d314cc05c167e491312b373468e46
ToppCell	Globus_pallidus-Neuronal-Inhibitory-iN1(Gad1Gad2_Th)-Inhibitory_Neuron.Gad1Gad2.Cadm2_(Cadm2+_state)-\|Globus_pallidus / BrainAtlas - Mouse McCarroll V32	OTP ABCB6 LHX3	5.07e-05	59	54	3	bcac768e1e034e27bab7cad3c2bf09a8f0a819ad
ToppCell	Globus_pallidus-Neuronal-Inhibitory-iN1(Gad1Gad2_Th)-Inhibitory_Neuron.Gad1Gad2.Cadm2_(Cadm2+_state)--\|Globus_pallidus / BrainAtlas - Mouse McCarroll V32	OTP ABCB6 LHX3	5.07e-05	59	54	3	f9b9464f4d786991aad01b47e2a8fd33f889c2e2
ToppCell	Globus_pallidus-Neuronal-Inhibitory-iN1(Gad1Gad2_Th)-Inhibitory_Neuron.Gad1Gad2.Cadm2_(Cadm2+_state)\|Globus_pallidus / BrainAtlas - Mouse McCarroll V32	OTP ABCB6 LHX3	5.07e-05	59	54	3	b2c10c4c0a750d7f49f5a813ab5d103fb07ca76b
ToppCell	Hippocampus-Endothelial-ENDOTHELIAL_TIP\|Hippocampus / BrainAtlas - Mouse McCarroll V32	ALX3 MMP23B ALX4 PRRX2	5.13e-05	168	54	4	26aa96b2b547d11941cb803995ea3d302ee0518c
ToppCell	control-Myeloid-pDC\|Myeloid / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls	PRMT6 EVC2 MMP23B FUT7	5.13e-05	168	54	4	affc39c7568b7df4b36af6f5b0e3702a18b6268c
ToppCell	PND03-Mesenchymal-Mesenchymal_structural-Fibroblastic-AF2-AF2_prolif\|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	PRRX1 ARX MMP23B PRRX2	5.25e-05	169	54	4	335619507857383c3b0b507cdf05d786ed59e585
ToppCell	droplet-Skin-nan-18m-Epithelial-keratinocyte_stem_cell\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ALX3 PRRX1 MMP23B ALX4	5.37e-05	170	54	4	10e0912dd0beab5d0bbe2bd49e477b5962687925
ToppCell	3'-Child04-06-SmallIntestine-Mesenchymal-fibroblastic-mLTo\|Child04-06 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	SPTBN5 PRRX1 PTCH2 PRRX2	5.37e-05	170	54	4	7653f1205d4e62abe7e31b1d76f9bbd665e45667
ToppCell	kidney_cells-Hypertensive_with+without-CKD-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast-Adaptive_/_Maladaptive_/_Repairing_Fibroblast\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	PRRX1 ALX1 ZFHX4 MMP23B	5.88e-05	174	54	4	9c916af5eebd932f67dc9117e1d26ff194a2ff2c
ToppCell	kidney_cells-Hypertensive_with+without-CKD-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	PRRX1 ALX1 ZFHX4 MMP23B	5.88e-05	174	54	4	bc71521f44a5fe013af42b06b5d1bd2446ecf3b5
ToppCell	3'-GW_trimst-1.5-LargeIntestine-Neuronal-neurons_B-Branch_B1_(eMN)\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	HOXA13 ZFHX2 CEP131 PHOX2B	5.88e-05	174	54	4	271c51d220842402975d97c86c9acfdbdf62a32c
ToppCell	5'-GW_trimst-2-LymphNode-Endothelial-blood_vessel_EC-Mature_venous_EC\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	RASA4 KANK3 RASA4B FUT7	6.42e-05	178	54	4	aa44851653d276226b922ee14dd1fc8d1a844cdf
ToppCell	facs-SCAT\|facs / Fat_BAT_GAT_MAT_SCAT - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 ZFHX4 AP2A2 LHX8	6.70e-05	180	54	4	6c70b6b7480507fa94625013222ad338ee7dd1d9
ToppCell	facs-Lung-EPCAM-24m-Mesenchymal-adventitial_cell\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 MMP23B IGSF3 PRRX2	7.15e-05	183	54	4	7e5c467fd1b156b928f1611a12ab4affb9f714b7
ToppCell	facs-Lung-EPCAM-24m-Mesenchymal-Adventitial_Fibroblast\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 MMP23B IGSF3 PRRX2	7.15e-05	183	54	4	63294d66e3ccf152ffe5d1237106764c14390b62
ToppCell	343B-Epithelial_cells-Epithelial-I_(AT1)-\|Epithelial_cells / Donor, Lineage, Cell class and subclass (all cells)	NBEAL2 PIEZO1 KANK3 MMP23B	7.30e-05	184	54	4	c7073d1b2c4fdb154d87678b92a0629c02116972
ToppCell	Frontal_cortex-Endothelial-ENDOTHELIAL_TIP\|Frontal_cortex / BrainAtlas - Mouse McCarroll V32	ALX3 ZFHX4 ALX4 PRRX2	7.30e-05	184	54	4	235890e8b424f4386b6ea52d173d20a00898df73
ToppCell	343B-Epithelial_cells-Epithelial-I_(AT1)\|Epithelial_cells / Donor, Lineage, Cell class and subclass (all cells)	NBEAL2 PIEZO1 KANK3 MMP23B	7.30e-05	184	54	4	1ed558a88215b248431c524ea16f13d9022ae98c
ToppCell	droplet-Lung-21m-Mesenchymal-fibroblast-adventitial_fibroblast-adventitial_fibroblast_l1\|21m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	PRRX1 MMP23B IGSF3 PRRX2	7.61e-05	186	54	4	7c1807fca590cdccf7f5734460bac228d33964ca
ToppCell	droplet-Heart-HEART-1m-Neuronal-cardiac_neuron\|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ZFHX4 TENM1 PHOX2B ALX4	7.93e-05	188	54	4	921a2c9212a0f2a00fd72c594d80924f27e8b9b7
ToppCell	E12.5-Mesenchymal-mesenchymal_fibroblast-tracheal_fibroblast\|E12.5 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase	PRRX1 ALX1 ZFHX4 IGSF3	7.93e-05	188	54	4	9b95730ddd13eb4624321bab3ab4989414977ca3
ToppCell	facs-Aorta-Heart-18m\|Aorta / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 MMP23B IGSF3 PRRX2	8.43e-05	191	54	4	6242f83acaf1714e9c1771a832cb67674b19e96d
ToppCell	PCW_05-06-Mesenchymal-Mesenchymal_fibroblastic-mes_adventitial_fibro_(10)\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	ALX3 PRRX1 ZFHX4 ALX4	8.43e-05	191	54	4	156b467187331ac6ca390d6ca861d9670bb7b956
ToppCell	facs-Lung-18m-Mesenchymal-fibroblast-adventitial_fibroblast-adventitial_fibroblast_l1\|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	PRRX1 MMP23B IGSF3 PRRX2	8.43e-05	191	54	4	2b73fcd592d16cae8ded5e45c8fbf2d9adc8caad
ToppCell	droplet-Lung-30m-Mesenchymal-fibroblast-adventitial_fibroblast-adventitial_fibroblast_l1\|30m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	PRRX1 MMP23B IGSF3 PRRX2	8.43e-05	191	54	4	24dc77ee8de01b42559f92721655f4281b114e17
ToppCell	droplet-Heart-4Chambers-21m-Mesenchymal-fibroblast_of_cardiac_tissue\|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 AARD MMP23B IGSF3	8.43e-05	191	54	4	f892f725a32e704cd18fec2f6d1db82993e7e79a
ToppCell	PND07-Mesenchymal-Mesenchymal_structural-Fibroblastic-AF2\|PND07 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	PRRX1 MMP23B PTCH2 IGSF3	8.43e-05	191	54	4	9f478f36a0b895e607e3bb77fa0f9f03cc0f33fc
ToppCell	droplet-Heart-4Chambers-21m-Mesenchymal-fibroblast\|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 AARD MMP23B IGSF3	8.43e-05	191	54	4	44631226f59364098a7dd58058e6970a75441009
ToppCell	droplet-Kidney-nan-18m-Mesenchymal\|Kidney / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 ARX MMP23B PRRX2	8.60e-05	192	54	4	38d7a24ae205ef91ed2e0f402d8022f2a9cdb243
ToppCell	facs-Aorta-Heart-18m-Mesenchymal\|Aorta / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 MMP23B IGSF3 PRRX2	8.60e-05	192	54	4	6d4fe7ea278efa4b9d43f8a3c282bc0e0e9abaea
ToppCell	droplet-Kidney-nan-18m-Mesenchymal-fibroblast\|Kidney / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 ARX MMP23B PRRX2	8.60e-05	192	54	4	84149a5c6c3b3c9b86aed77cf8e72d99ef099fab
ToppCell	facs-Aorta-Heart-18m-Mesenchymal-nan\|Aorta / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 MMP23B IGSF3 PRRX2	8.60e-05	192	54	4	47aed7c8e6f5ce1084821212a04f568319e65fd6
ToppCell	facs-Lung-18m-Mesenchymal-fibroblast-adventitial_fibroblast\|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	PRRX1 MMP23B IGSF3 PRRX2	8.60e-05	192	54	4	011634a24b0c61d9b463fe755502edbc5cd70b7a
ToppCell	droplet-Kidney-nan-18m-Mesenchymal-Stroma____fibroblast\|Kidney / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 ARX MMP23B PRRX2	8.60e-05	192	54	4	04d155897ed075c359933080e36a4ab2150b6e9f
ToppCell	facs-Aorta-Heart-18m-Mesenchymal-fibroblast_of_cardiac_tissue\|Aorta / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 MMP23B IGSF3 PRRX2	8.60e-05	192	54	4	2c6406bc97c3224099b94a43f2890f057b528fa6
ToppCell	facs-Lung-24m-Mesenchymal-fibroblast-adventitial_fibroblast\|24m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	PRRX1 MMP23B IGSF3 PRRX2	8.78e-05	193	54	4	e27885a9e1a2a3e165c5366d4cfcda05c5454483
ToppCell	facs-Lung-EPCAM-18m-Mesenchymal-adventitial_cell\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 MMP23B IGSF3 PRRX2	8.78e-05	193	54	4	ac088c8f27b5b1888610e461ff45870ca60da886
ToppCell	facs-Lung-EPCAM-18m-Mesenchymal-Adventitial_Fibroblast\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRRX1 MMP23B IGSF3 PRRX2	8.78e-05	193	54	4	92048d2e9e43513e6185e09553be3ee47d7e5207
ToppCell	PND07-Mesenchymal-Mesenchymal_structural-Fibroblastic-AF2-AF2_mature\|PND07 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	PRRX1 MMP23B PTCH2 IGSF3	8.78e-05	193	54	4	051f61156b0e2e95292b2d8377faf3190b50f264
ToppCell	droplet-Lung-18m-Mesenchymal-fibroblast-adventitial_fibroblast\|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	PRRX1 MMP23B IGSF3 PRRX2	8.78e-05	193	54	4	fe9720185929ef849edd1b8eb4854306b392e5a2
ToppCell	droplet-Lung-21m-Mesenchymal-fibroblast-adventitial_fibroblast\|21m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	PRRX1 MMP23B IGSF3 PRRX2	8.95e-05	194	54	4	ca1f24070424b44b7a442e4fca761ebfbe24b063
ToppCell	facs-Lung-24m-Mesenchymal-fibroblast-adventitial_fibroblast-adventitial_fibroblast_l1\|24m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	PRRX1 MMP23B IGSF3 PRRX2	8.95e-05	194	54	4	c9e589fe7df6a9b377654581a2aebb607cbb03b9
ToppCell	10x3'2.3-week_17-19-Mesenchymal_osteo-stroma-osteoblast_precursor\|week_17-19 / cell types per 3 fetal stages;per 3',per 5'	PRRX1 ZFHX4 PAX7 IGSF3	9.13e-05	195	54	4	ec12cfb2fce44cc2de4e198ef5af075e626f0329
ToppCell	Non-neuronal-Dividing-Radial_Glia-early\|World / Primary Cells by Cluster	ALX3 PRRX1 ALX1 ALX4	9.32e-05	196	54	4	dd3c6ea5e4ebcc27064f16507de6db6dc8f86fa8
ToppCell	Non-neuronal-Dividing-Radial_Glia-early-1\|World / Primary Cells by Cluster	ALX3 PRRX1 ALX1 ALX4	9.32e-05	196	54	4	70fe6a1a6de891832aaa6276c985b326985e14db
ToppCell	5'-GW_trimst-2-LargeIntestine-Mesenchymal-fibroblastic-Stromal_3_(C7+)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	PRRX1 ZFHX4 MMP23B PTCH2	9.50e-05	197	54	4	2744cc94883c5d0424677cf5093bbab622933e9b
ToppCell	10x3'2.3-week_17-19-Mesenchymal_osteo-stroma\|week_17-19 / cell types per 3 fetal stages;per 3',per 5'	PRRX1 ZFHX4 SHOX PRRX2	9.69e-05	198	54	4	1f956e369e00d37835095a001db4b62a79014532
ToppCell	10x3'2.3-week_17-19-Mesenchymal_osteo\|week_17-19 / cell types per 3 fetal stages;per 3',per 5'	PRRX1 ZFHX4 SHOX PRRX2	9.69e-05	198	54	4	dc6fbad0ecdd057189f71afcdb6aca25207314a3
ToppCell	10x3'2.3-week_17-19-Mesenchymal_myocytic-stroma-muscle_stem_cell\|week_17-19 / cell types per 3 fetal stages;per 3',per 5'	ZFHX4 MMP23B PAX7 IGSF3	9.69e-05	198	54	4	55e583321f60c95898d93cd0d2615c6692db52ec
ToppCell	5'-GW_trimst-2-SmallIntestine-Mesenchymal-fibroblastic-Stromal_3_(C7+)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	PRRX1 ZFHX4 MMP23B PTCH2	9.88e-05	199	54	4	103f657132e830a0e5efeb745afb4b77c208a1fa
ToppCell	Tracheal-10x5prime-Stromal-Fibroblastic-Fibro_alveolar\|10x5prime / Cell types per location group and 10X technology with lineage, and cell group designations	PRRX1 MMP23B PXK PRRX2	1.01e-04	200	54	4	3e0041c04e42a47257517dae8707a6454570c256
ToppCell	cellseq2-Mesenchymal-Fibroblastic\|cellseq2 / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	PRRX1 ZFHX4 MMP23B PRRX2	1.01e-04	200	54	4	1c10597edd532bf172ca09870a937d35e2585081
ToppCell	Biopsy_Control_(H.)-Mesenchymal-PLIN2+_Fibroblasts\|Biopsy_Control_(H.) / Sample group, Lineage and Cell type	PRRX1 ZFHX4 MMP23B PRRX2	1.01e-04	200	54	4	cdaf462b1db29dab61038eeab5ddd3eef3386763
ToppCell	cellseq2-Mesenchymal-Fibroblastic-Fibroblastic_1\|cellseq2 / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	PRRX1 ZFHX4 MMP23B PRRX2	1.01e-04	200	54	4	440dda48b09c6a8581b7ca634b0d67f1ecacf65e
ToppCell	cellseq2-Mesenchymal-Fibroblastic-Fibroblastic_1-AF2\|cellseq2 / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	PRRX1 ZFHX4 MMP23B PRRX2	1.01e-04	200	54	4	44317fbf4d1480a37b50ab2777bf1a3e4fc0c05f
ToppCell	lymphoid-T_cell-pro-T_cell\|World / Lineage, cell class and subclass	OBSCN TENM1 ZC2HC1C	1.26e-04	80	54	3	9bd3ad5029eb84efcdbf08fe268c29fa9b0b302b
ToppCell	Cerebellum-Neuronal-Excitatory-eN2(Slc17a7_Slc17a6)-Slc17a6-Excitatory_Neuron.Slc17a6.Sln_(Unipolar_brush_cell)-\|Cerebellum / BrainAtlas - Mouse McCarroll V32	OBSCN ABCB6 PHOX2B	1.90e-04	92	54	3	a5b89f971b904b8e280fe66996a7f8efd92c2132
ToppCell	Cerebellum-Neuronal-Excitatory-eN2(Slc17a7_Slc17a6)-Slc17a6-Excitatory_Neuron.Slc17a6.Sln_(Unipolar_brush_cell)\|Cerebellum / BrainAtlas - Mouse McCarroll V32	OBSCN ABCB6 PHOX2B	1.90e-04	92	54	3	b867cd7923585b13beaf086c40781bab2d7b7434
ToppCell	TCGA-Endometrium-Primary_Tumor-Endometrial_Adenocarcinoma-Mixed_Serous_and_Endometrioid-1\|TCGA-Endometrium / Sample_Type by Project: Shred V9	HOXC13 PAX7 LHX8	3.67e-04	115	54	3	c724e8b1fddcefdaa8d247aaff68c986538068f7
ToppCell	Substantia_nigra-Endothelial-MURAL-M1(Rgs5Acta2)-M1_1\|Substantia_nigra / BrainAtlas - Mouse McCarroll V32	ALX3 ALX1 ALX4	4.90e-04	127	54	3	8c972ea21797ee46d6c67e91cfd2e2e2ce016248
ToppCell	frontal_cortex-Neuronal-glutamatergic_neuron-L2/3_IT-L2/3_IT_ALM_Ptrf\|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	SPTBN5 EVC2 ZFHX4	5.61e-04	133	54	3	a1bc34e5dda4ff4716b857931cc196f6770f58f4
ToppCell	frontal_cortex-Neuronal-glutamatergic_neuron-L6_CT-L6_CT_ALM_Nxph2_Sla\|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	SPTBN5 OBSCN PTCH2	5.73e-04	134	54	3	6d97fa07f55ae20c17b9d5262e893957cccc6dba
ToppCell	Hippocampus-Endothelial-ENDOTHELIAL_TIP-Dcn_1-Dcn_1_1\|Hippocampus / BrainAtlas - Mouse McCarroll V32	ALX3 MMP23B PRRX2	5.73e-04	134	54	3	b959899c89d3a0363a3cd2309155280e0fe5ba88
ToppCell	TCGA-Testes-Primary_Tumor-Testicular_Germ_Cell_Tumor-Non-Seminoma-_Embryonal_Carcinoma\|TCGA-Testes / Sample_Type by Project: Shred V9	ARX SHOX LHX3	6.38e-04	139	54	3	6b58d01ce9d9ac23434333f9faf1bb0eef14ba90
ToppCell	MS-CD8-exh_CD4\|MS / Condition, Cell_class and T cell subcluster	EVC2 AARD MMP23B	6.79e-04	142	54	3	7591491520a883bb09fa2b8d0a20ae2abd2b8703
ToppCell	TCGA-Bone_and_Soft_Tissue-Primary_Tumor-Sarcoma\|TCGA-Bone_and_Soft_Tissue / Sample_Type by Project: Shred V9	PRRX1 EVC2	6.85e-04	32	54	2	ba89b22a5ce8ee9f3099b1fa84721724b94c7759
ToppCell	TCGA-Bone_and_Soft_Tissue-Primary_Tumor\|TCGA-Bone_and_Soft_Tissue / Sample_Type by Project: Shred V9	PRRX1 EVC2	6.85e-04	32	54	2	58b212d4f2955f06a195df0f79ad95a8ff145b83
ToppCell	primary_visual_cortex-Neuronal-GABAergic_neuron-Pvalb-Pvalb_Reln_Itm2a\|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	HOXA13 RASA4 C9orf50	7.07e-04	144	54	3	0bbe670454846cf9bc7464ae4e91488415c4111d
ToppCell	frontal_cortex-Neuronal-glutamatergic_neuron-L2/3_IT\|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	SPTBN5 EVC2 ZFHX4	7.65e-04	148	54	3	d5cace5605bff2bb8248fadb51f2dad7539930ba
ToppCell	BAL-Mild-Myeloid-cDC-cDC-cDC_4\|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	RALGPS1 RASA4B SPECC1	7.80e-04	149	54	3	a85a051e0d82430160967e72fa04b55f43e84513
ToppCell	BAL-Mild-Myeloid-cDC-cDC-cDC_4\|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	RALGPS1 RASA4B SPECC1	7.95e-04	150	54	3	7a381f5ae94eba5eb60dcbf83416b4eb18c279ea
ToppCell	Frontal_cortex-Endothelial-ENDOTHELIAL_TIP-Dcn_1\|Frontal_cortex / BrainAtlas - Mouse McCarroll V32	ALX3 ALX4 PRRX2	8.58e-04	154	54	3	65dbb60f636562eeba3dafadae9c0c7db2b27476
ToppCell	Adult-Immune-mast_cell-D122\|Adult / Lineage, Cell type, age group and donor	AARD TENM1 SPECC1	8.74e-04	155	54	3	7c9de0591d1bf756b8e268b278bbe10bd5415dcd
ToppCell	frontal_cortex-Neuronal-glutamatergic_neuron-L6_CT\|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	SPTBN5 OBSCN PTCH2	8.91e-04	156	54	3	fe383ce3a0c37f7343d7026cb51260a04d4c2829
ToppCell	Brain_organoid-organoid_Kanton_Nature-Organoid-1M-Radial_glial-gliogenic/outer_RGCs_and_astrocytes\|Organoid-1M / Sample Type, Dataset, Time_group, and Cell type.	AARD IGSF3 DOP1A	9.07e-04	157	54	3	2c1219ee19a6246a3b9f5c2c1a37f26ea934a822
ToppCell	facs-Liver-Liver_non-hepato/SCs-18m-Myeloid-myeloid_leukocyte\|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	LHX4 PAX7 FUT7	9.24e-04	158	54	3	bd37d567754b660bfff7aef81cb307a384ec20a0
ToppCell	Adult-Mesenchymal-myofibroblast_cell-D175\|Adult / Lineage, Cell type, age group and donor	PRRX1 TENM1 PRRX2	9.76e-04	161	54	3	048b7dc00746987a24bf870d4d278c4183eb04a2
ToppCell	Hippocampus-Neuronal-Inhibitory-iN1(Gad1Gad2_Th)\|Hippocampus / BrainAtlas - Mouse McCarroll V32	ARX DRGX HSF4	9.76e-04	161	54	3	b81b346309f3facbfbebd91cae4c5b33c7bd24ef
ToppCell	E15.5-Mesenchymal-mesenchymal_fibroblast-tracheal_fibroblast\|E15.5 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase	PRRX1 ALX1 CEP131	9.76e-04	161	54	3	9703b7e67d9fadb6129cad166bd01be915042e44
ToppCell	facs-Pancreas-Endocrine-18m-Epithelial-pancreatic_PP_cell\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ARX OBSCN TENM1	9.93e-04	162	54	3	ca1014e32996f777bff021830ce9a7cf4acf58d5
Disease	Frontonasal dysplasia	ALX3 ALX1 ALX4	5.15e-08	5	52	3	C1876203
Disease	Polydactyly	ALX3 HOXA13 EVC2 HOXD13 ALX4	2.01e-06	117	52	5	C0152427
Disease	non-syndromic X-linked intellectual disability 1 (implicated_via_orthology)	ARX ALX4	3.05e-06	2	52	2	DOID:0112038 (implicated_via_orthology)
Disease	Combined pituitary hormone deficiencies, genetic form	LHX4 LHX3	3.04e-05	5	52	2	cv:C4273747
Disease	hypospadias (biomarker_via_orthology)	HOXA13 HOXD13	4.55e-05	6	52	2	DOID:10892 (biomarker_via_orthology)
Disease	panhypopituitarism (is_implicated_in)	LHX4 LHX3	6.36e-05	7	52	2	DOID:9410 (is_implicated_in)
Disease	non-syndromic X-linked intellectual disability (implicated_via_orthology)	ARX ALX4	1.09e-04	9	52	2	DOID:0050776 (implicated_via_orthology)
Disease	facial morphology measurement	PRMT6 ALX1 CRADD KLK14 LHX8 ALX4	1.65e-04	466	52	6	EFO_0007841
Disease	acute lymphoblastic leukemia, response to antineoplastic agent	NOX3 LMBRD2	5.11e-04	19	52	2	EFO_0000220, GO_0097327

Protein segments in the cluster

Peptide	Gene	Start	Entry
LTEARVQVWFQNRRA	ALX1	171	Q15699
TDLTEARVQVWFQNR	ALX4	251	Q9H161
AFQWAVQRAISRRVQ	AARD	66	Q4LEZ3
RYWERRRSVQQSVIV	C9orf50	286	Q5SZB4
DLTEARVQVWFQNRR	ALX3	191	O95076
WRRFQADLQTAVVVA	SPECC1	721	Q5M775
TFLWIRVQQFTSRRV	ABCB6	331	Q9NP58
TQRVSVQRVQAERYW	DOP1A	1006	Q5JWR5
LETVWVSRANVIQRR	DHX30	766	Q7L2E3
KAEEQWQRRQQVFRR	ATP8B1	1186	O43520
WYRVIQIVINRDDVQ	AP2A2	461	O94973
RLRVVQQEEGWFRLQ	RASA4	221	O43374
RLRVVQQEEGWFRLQ	RASA4B	221	C9J798
RRFNQVSFWVVREIL	RALGPS1	96	Q5JS13
VNLSEARVQVWFQNR	PRRX2	141	Q99811
LTEARVQVWFSNRRA	PAX7	256	P23759
WEATQQVLRVVRQVT	KLK14	101	Q9P0G3
RVAAWVVSNFQERQL	FUT7	171	Q11130
TENQVRVWFQNRRVK	NOTO	196	A8MTQ0
IRARVLLQQFQTAWR	EVC2	871	Q86UK5
LDMRVVQVWFQNRRA	LHX3	196	Q9UBR4
LDMRVVQVWFQNRRA	LHX4	196	Q969G2
RTGLSRRVIQVWFQN	LHX8	261	Q68G74
TQIQRGRFSVVRQCW	OBSCN	7676	Q5VST9
VIWQLVDRQNRRSNI	IGSF3	446	O75054
QVRSLQVWQQTVDQR	CEP97	631	Q8IW35
VQSQVVEAFIRWRQR	CRADD	156	P78560
SERQVTIWFQNRRVK	HOXD13	316	P35453
VEASAIWQQAREVVR	PRMT6	111	Q96LA8
NLTEARVQVWFQNRR	DRGX	71	A6NNA5
ERQVTIWFQNRRVKE	HOXC13	301	P31276
RQQNEILWREVVTLR	HSF4	161	Q9ULV5
DLTEARVQVWFQNRR	ARX	366	Q96QS3
VRLVAQEWFRVSSQR	KANK3	576	Q6NY19
ATVTIQRWYRHQVQR	CEP131	271	Q9UPN4
IGLTESRVQVWFQNR	OTP	141	Q5XKR4
SVQRHRRTQVQWQIL	LMBRD2	316	Q68DH5
RRTQVQWQILLEQAF	LMBRD2	321	Q68DH5
VVRRQQRVLTTYSWR	MMP23B	371	O75900
QWERAQSRRAFQELV	NBEAL2	1756	Q6ZNJ1
EQASTVLQAWQRRFV	PTCH2	346	Q9Y6C5
LSEARVQVWFQNRRA	SHOX	156	O15266
VLEIARQRAVAQAWT	TENM1	2646	Q9UKZ4
ERIIRFWRFQQEVVI	NOX3	281	Q9HBY0
VVALEQSRQQRGWVF	PMVK	131	Q15126
LSERQVTIWFQNRRV	HOXA13	361	P31271
RRQEEVTVRWQRLLQ	SPTBN5	506	Q9NRC6
QRQQAVTQAWAVLQR	SPTBN5	1916	Q9NRC6
VTQAWAVLQRRMEQR	SPTBN5	1921	Q9NRC6
RFDWRDKQVVTQVRN	CTSO	111	P43234
KRVVQVWFQNTRARE	ZFHX4	2601	Q86UP3
SRVVVVWFQNARQKA	ZFHX2	1636	Q9C0A1
QRGISVENSWQIVRR	PXK	41	Q7Z7A4
AVANFDRTEWVQIRR	ZC2HC1C	201	Q53FD0
WVTNAQAVLRRRQQE	PIEZO1	1451	Q92508
VNLTEARVQVWFQNR	PRRX1	131	P54821
DLTEARVQVWFQNRR	PHOX2B	136	Q99453