Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctionextracellular matrix binding

COL11A1 THSD1

7.10e-0473112GO:0050840
GeneOntologyBiologicalProcessspinal cord motor neuron differentiation

SCYL1 SCYL3

2.10e-0441112GO:0021522
GeneOntologyBiologicalProcesscentral nervous system development

SCYL1 SHROOM4 VCAN SYNE2 SCYL3

2.25e-041197115GO:0007417
GeneOntologyBiologicalProcessventral spinal cord development

SCYL1 SCYL3

4.06e-0457112GO:0021517
GeneOntologyBiologicalProcesscell differentiation in spinal cord

SCYL1 SCYL3

4.96e-0463112GO:0021515
GeneOntologyBiologicalProcessdetection of mechanical stimulus

PKD1L3 COL11A1

7.02e-0475112GO:0050982
GeneOntologyBiologicalProcessglial cell migration

VCAN SYNE2

7.99e-0480112GO:0008347
GeneOntologyBiologicalProcessspinal cord development

SCYL1 SCYL3

1.75e-03119112GO:0021510
GeneOntologyCellularComponentfocal adhesion

SHROOM4 SYNE2 THSD1

1.27e-03431113GO:0005925
GeneOntologyCellularComponentcell-substrate junction

SHROOM4 SYNE2 THSD1

1.37e-03443113GO:0030055
GeneOntologyCellularComponentlamellipodium

SYNE2 SCYL3

6.21e-03230112GO:0030027
DomainHEAT

SCYL1 SCYL3

3.51e-0448112PF02985
DomainHEAT

SCYL1 SCYL3

5.12e-0458112IPR000357
DomainHEAT_REPEAT

SCYL1 SCYL3

7.45e-0470112PS50077
DomainLectin_C

PKD1L3 VCAN

1.07e-0384112PF00059
DomainC-type_lectin-like

PKD1L3 VCAN

1.12e-0386112IPR001304
Domain-

PKD1L3 VCAN

1.42e-03971123.10.100.10
DomainC-type_lectin-like/link

PKD1L3 VCAN

1.48e-0399112IPR016186
DomainCTDL_fold

PKD1L3 VCAN

1.73e-03107112IPR016187
Domain-

SCYL1 SCYL3

7.21e-032221121.25.10.10
DomainARM-like

SCYL1 SCYL3

1.05e-02270112IPR011989
DomainARM-type_fold

SCYL1 SCYL3

1.62e-02339112IPR016024
DomainPkinase

SCYL1 SCYL3

2.02e-02381112PF00069
PathwayREACTOME_DISEASES_OF_GLYCOSYLATION

VCAN THSD1

6.05e-0414342M27275
PathwayREACTOME_DISEASES_OF_METABOLISM

VCAN THSD1

1.84e-0325042M27554
PathwayREACTOME_EXTRACELLULAR_MATRIX_ORGANIZATION

COL11A1 VCAN

1.95e-0325842MM14572
PathwayREACTOME_EXTRACELLULAR_MATRIX_ORGANIZATION

COL11A1 VCAN

2.63e-0330042M610
Pubmed

ADAMTS2 promotes radial migration by activating TGF-β signaling in the developing neocortex.

COL11A1 VCAN

9.53e-061511238871984
Pubmed

Overlapping Role of SCYL1 and SCYL3 in Maintaining Motor Neuron Viability.

SCYL1 SCYL3

1.72e-052011229437892
Pubmed

Nell1-deficient mice have reduced expression of extracellular matrix proteins causing cranial and vertebral defects.

COL11A1 VCAN THSD1

3.46e-0521011316537572
Pubmed

Transcriptional analysis of cleft palate in TGFβ3 mutant mice.

COL11A1 VCAN

5.38e-053511232913205
Pubmed

Crk and Crkl Are Required in the Endocardial Lineage for Heart Valve Development.

COL11A1 VCAN

2.30e-047211237702066
Pubmed

Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.

SCYL1 COL11A1

2.76e-047911222504420
GeneFamilySCY1 like pseudokinases

SCYL1 SCYL3

5.14e-073821033
GeneFamilyHyalectan proteoglycans|V-set domain containing|Sushi domain containing|C-type lectin domain containing

PKD1L3 VCAN

1.39e-0441821298
CoexpressionGSE34006_WT_VS_A2AR_KO_TREG_DN

ILRUN VCAN SYNE2 TDRP

1.04e-06200114M9042
CoexpressionGSE18203_CTRL_VS_INTRATUMORAL_CPG_INJ_MC38_TUMOR_UP

ILRUN VCAN TDRP

6.90e-05200113M7207
ToppCellCOVID-19-Endothelial_cells-Capillary_endothelial_cells|COVID-19 / group, cell type (main and fine annotations)

SHROOM4 SYNE2 THSD1

1.03e-05181113c5f9c92af1384d9089c65afdf41c6feb8345a3ae
ToppCellAnterior_Cingulate_gyrus_(CgG)-Non-neuronal-Macroglial-Oligo-OPC|Anterior_Cingulate_gyrus_(CgG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

COL11A1 SHROOM4 VCAN

1.05e-051821133cc61f5f7ad4a81eba3daf65e122880b5af3adc0
ToppCellSomatosensory_Cortex_(S1)-Non-neuronal-Macroglial-Oligo-OPC|Somatosensory_Cortex_(S1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

COL11A1 SHROOM4 VCAN

1.05e-051821138a8b08ac4bb3cba3541dbe234e088703842285b9
ToppCellAnterior_Cingulate_gyrus_(CgG)-Non-neuronal-Macroglial-Oligo-OPC-OPC_L1-6_MYT1|Anterior_Cingulate_gyrus_(CgG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

COL11A1 SHROOM4 VCAN

1.05e-051821135d909e4b5f662905bf1be9c686bbddc3e87d2be9
ToppCellSomatosensory_Cortex_(S1)-Non-neuronal-Macroglial-Oligo-OPC-OPC_L1-6_MYT1|Somatosensory_Cortex_(S1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

COL11A1 SHROOM4 VCAN

1.05e-05182113e36766309c4d96a90d213ce37d3acef1029a3fdc
ToppCellprimary_auditory_cortex_(A1C)-Non-neuronal-Macroglial-Oligo-OPC|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

COL11A1 SHROOM4 VCAN

1.10e-05185113fba2dc46cd98ab9c78e788959c2121aa10d148b2
ToppCellprimary_auditory_cortex_(A1C)-Non-neuronal-Macroglial-Oligo-OPC-OPC_L1-6_MYT1|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

COL11A1 SHROOM4 VCAN

1.10e-05185113efc5d564f8793c751ba640aef60f761e4b081d3f
ToppCellPrimary_Visual_cortex_(V1C)-Non-neuronal-Macroglial-Oligo-OPC-OPC_L1-6_MYT1|Primary_Visual_cortex_(V1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

COL11A1 SHROOM4 VCAN

1.14e-051871135b7a1edee602e55d3400dc17dbb6b8aaa26defc0
ToppCellPrimary_Visual_cortex_(V1C)-Non-neuronal-Macroglial-Oligo-OPC|Primary_Visual_cortex_(V1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

COL11A1 SHROOM4 VCAN

1.14e-05187113daff7ccd3f1924cf2b34d3aca3eccde245aaf371
ToppCellTCGA-Colorectal-Primary_Tumor-Colorectal_Adenocarcinoma-Colon_Adenocarcinoma-7|TCGA-Colorectal / Sample_Type by Project: Shred V9

COL11A1 SHROOM4 VCAN

1.16e-0518811314bc73cf79c79c9f208369fd8d498e5b26e0114d
ToppCell10x5'v1-week_12-13-Endothelial-stroma-tip_EC|week_12-13 / cell types per 3 fetal stages;per 3',per 5'

SHROOM4 THSD1 TDRP

1.21e-05191113cf1a67b7c0d5c0dc5d4d59faf9d9b1a3a1fb00e0
ToppCellwk_20-22-Endothelial-Blood_vessel_endothelial-Aerocyte|wk_20-22 / Celltypes from embryonic and fetal-stage human lung

SHROOM4 THSD1 TDRP

1.27e-0519411354b7126b83f7482227aeaea065f504b65fa34bfe
ToppCell5'-Parenchyma_lung-Endothelial-Blood_vessel_EC-pulmonary_artery_endothelial_cell-EC_arterial-EC_arterial_L.2.4.1.3|5' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

SHROOM4 SYNE2 THSD1

1.35e-05198113d5990cab01de6e6f3757f5a50ef70ced711bb1fa
ToppCellLPS_IL1RA-Endothelial|LPS_IL1RA / Treatment groups by lineage, cell group, cell type

SHROOM4 SYNE2 THSD1

1.39e-052001135c092b2ecc081b5d04476c56333c338cd89ab984
ToppCellLPS_IL1RA-Endothelial-Endothelial|LPS_IL1RA / Treatment groups by lineage, cell group, cell type

SHROOM4 SYNE2 THSD1

1.39e-0520011372ea9882a8ed26fa1534aeb6ba0d1897dccc20c5
ToppCellBrain_organoid-organoid_Kanton_Nature-Organoid-2M-Radial_glial-RGCs_3|Organoid-2M / Sample Type, Dataset, Time_group, and Cell type.

COL11A1 VCAN SYNE2

1.39e-0520011355a1df656545ff078b727d55e4d65d61ddb5c41f
ToppCellmetastatic_Lymph_Node-Fibroblasts-Myofibroblasts|Fibroblasts / Location, Cell class and cell subclass

COL11A1 VCAN

1.41e-0473112116259a036373bccaeb77fe3c675741a5ca81c52
ToppCellmild-immature_Neutrophil|mild / Cohort 1 (10x PBMC) with disease condition, cell group and cell class

SHROOM4 SCYL3

1.83e-0483112f7225bc24ad6df3a41375cc4614af824e0db3559
ToppCellSubstantia_nigra-Macroglia-POLYDENDROCYTE-P3-Tnr|Substantia_nigra / BrainAtlas - Mouse McCarroll V32

PKD1L3 VCAN

2.01e-04871128ca87e4a332ef6f035b13e80dcc0110f32172c9a
ToppCellSubstantia_nigra-Macroglia-POLYDENDROCYTE-P3|Substantia_nigra / BrainAtlas - Mouse McCarroll V32

PKD1L3 VCAN

2.01e-04871124ec3a9489981ed69061c1ca363271edf6a3635d2
ToppCellmild-immature_Neutrophil|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class

SHROOM4 SCYL3

3.15e-041091122f03d6ee8b13424cc6a5bc60ac3461b44dff9d79
ToppCellSubstantia_nigra|World / BrainAtlas - Mouse McCarroll V32

COL11A1 TDRD5

3.51e-0411511218174b8d57d444fab1e9d2b13d22939c83c958e0
ToppCellLPS-IL1RA-Endothelial-Epi-like|LPS-IL1RA / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2

PKD1L3 TDRD5

3.57e-04116112cf4e3c34570f57502ec524881d351ef8e47976d2
ToppCellSmart-seq2-lymph_node_(Smart-seq2)-hematologic|lymph_node_(Smart-seq2) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type

COL11A1 TDRD5

4.21e-04126112f2ec5aa6c649ae1ff99519f6897cf207dc292edf
ToppCellSmart-seq2-lymph_node_(Smart-seq2)-hematologic-erythrocytic|lymph_node_(Smart-seq2) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type

COL11A1 TDRD5

4.21e-04126112cd02f3d4a3fadd24f3a298639b392f0354d227d2
ToppCellSmart-seq2-lymph_node_(Smart-seq2)-hematologic-erythrocytic-erythrocyte|lymph_node_(Smart-seq2) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type

COL11A1 TDRD5

4.21e-0412611261a7e400cbc81691b21cd3c37376c1d19fec2270
ToppCellLPS-antiTNF-Epithelial_alveolar-Mes-Like-Differentiating_AT1|LPS-antiTNF / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2

COL11A1 TDRD5

4.34e-041281122cf0384240a4a663869cf6b27d954236f6214a9a
ToppCellSubstantia_nigra-Endothelial-ENDOTHELIAL_STALK|Substantia_nigra / BrainAtlas - Mouse McCarroll V32

SHROOM4 THSD1

4.55e-04131112308ddb7fe113eac5dbeb9cb0b688d9e09275ce5e
ToppCellPosterior_cortex-Endothelial-ENDOTHELIAL_STALK-Flt1_1|Posterior_cortex / BrainAtlas - Mouse McCarroll V32

SHROOM4 THSD1

4.55e-04131112d46bb28612b9690b2e3550b8adbd10781788c00d
ToppCellprimary_visual_cortex-Neuronal-glutamatergic_neuron-L6_IT-L6_IT_VISp_Car3|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

COL11A1 TDRD5

4.76e-041341124ef5f395e321cf04e56560be2502a8aa157682f4
ToppCellStriatum-Endothelial-ENDOTHELIAL_STALK|Striatum / BrainAtlas - Mouse McCarroll V32

SHROOM4 THSD1

4.97e-04137112d37f425b13bc046baa1f8619b98a16b936f88ff6
ToppCellStriatum-Endothelial-ENDOTHELIAL_STALK-Flt1_1|Striatum / BrainAtlas - Mouse McCarroll V32

SHROOM4 THSD1

4.97e-04137112306b11b3b9e5fd562d845fb5eaa4ac982864efce
ToppCellPosterior_cortex-Endothelial-ENDOTHELIAL_STALK|Posterior_cortex / BrainAtlas - Mouse McCarroll V32

SHROOM4 THSD1

5.41e-0414311235d3652680c4dddd293301595d813161c66e5673
ToppCellGlobus_pallidus-Endothelial-ENDOTHELIAL_STALK-Flt1_1|Globus_pallidus / BrainAtlas - Mouse McCarroll V32

SHROOM4 THSD1

5.49e-041441121c118b22c2ff3a526a5207d6c9d772636ee065fd
ToppCellmetastatic_Brain-Myeloid_cells-Pleural_Mac|Myeloid_cells / Location, Cell class and cell subclass

SHROOM4 VCAN

5.49e-041441126f1158c85e1d50ef6f2c67abdb2dc855a9786b9a
ToppCellGlobus_pallidus-Endothelial-ENDOTHELIAL_STALK|Globus_pallidus / BrainAtlas - Mouse McCarroll V32

SHROOM4 THSD1

5.88e-04149112d9c47f523c75ddcd6131e45d2ffc24b970932cae
ToppCellTCGA-Breast|World / Sample_Type by Project: Shred V9

TDRD5 SCYL3

5.95e-0415011208686ba1acac5c58667bf62e2af84c691d6bbdfb
ToppCellILEUM-non-inflamed-(3)_MNP-(3)_Inf._Macrophages|(3)_MNP / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)

PKD1L3 VCAN

6.03e-0415111288f7498f29e43441e0982f9f97ea563edf2835a4
ToppCellFetal_29-31_weeks-Mesenchymal-chondrocyte-D088|Fetal_29-31_weeks / Lineage, Cell type, age group and donor

VCAN TDRD5

6.19e-0415311265641cc82883716dba0fefb749a30174a63f4da5
ToppCellFrontal_cortex-Endothelial-ENDOTHELIAL_STALK|Frontal_cortex / BrainAtlas - Mouse McCarroll V32

SHROOM4 THSD1

6.27e-04154112b0735365de153d4586ca17896431d7bd9c7d8eac
ToppCellThalamus-Endothelial-ENDOTHELIAL_STALK|Thalamus / BrainAtlas - Mouse McCarroll V32

SHROOM4 THSD1

6.35e-04155112fe6c4aba0e98cda84bf178aeac2e9fa834477f22
ToppCellVE-Treg-naive_CD4|VE / Condition, Cell_class and T cell subcluster

SHROOM4 SYNE2

6.44e-041561126501baf73616e702946de9fb13d267e30a68888b
ToppCellrenal_medulla_nuclei-Hypertensive_with+without-CKD-Epithelial-Renal_corpuscle_epithelial_cell-parietal_epithelial_cell-Parietal_Epithelial_Cell|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group

COL11A1 VCAN

6.44e-04156112dd41ed918b07fa248da458a629b3c53cb7ea8764
ToppCellrenal_medulla_nuclei-Hypertensive_with+without-CKD-Epithelial-Renal_corpuscle_epithelial_cell-parietal_epithelial_cell|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group

COL11A1 VCAN

6.44e-04156112abf9dd075b1ca8f613c660cc82f8a5af071fb6ab
ToppCellTCGA-Thryoid-Primary_Tumor-Thyroid_Papillary_Carcinoma-Tall_Cell-1|TCGA-Thryoid / Sample_Type by Project: Shred V9

COL11A1 VCAN

6.44e-0415611245a05c7a45a3ec8551818ab67f18b3b9553934c1
ToppCellICU-NoSEP-Lymphocyte-T_NK-Treg|ICU-NoSEP / Disease, Lineage and Cell Type

SYNE2 THSD1

6.68e-04159112d065ec02a4f3672ba53d4fea66029f1ce68f367f
ToppCell390C-Epithelial_cells-Epithelial-A_(AT2)-|390C / Donor, Lineage, Cell class and subclass (all cells)

COL11A1 TDRP

6.77e-04160112cf27b4ac4d0caa6f9b068dc8ea93472470a01a4d
ToppCell390C-Epithelial_cells-Epithelial-A_(AT2)|390C / Donor, Lineage, Cell class and subclass (all cells)

COL11A1 TDRP

6.77e-04160112731def6d82814ebac1a400bc7aea5f6da43ec960
ToppCellEntopeduncular-Endothelial-ENDOTHELIAL_STALK|Entopeduncular / BrainAtlas - Mouse McCarroll V32

SHROOM4 THSD1

6.77e-0416011204714d0b9bad4c11fa193ed168e2d84a4df39e2e
ToppCellfacs-Lung-24m-Endothelial-capillary_endothelial-capillary_endothelial_cell-capillary_type_1_endothelial_cell|24m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

COL11A1 TDRD5

6.94e-04162112bf886e22ff2a20353499004b53f25fb9e6574896
ToppCellrenal_papilla_nuclei-Adult_normal_reference-Epithelial-Intermediate_tubule_epithelial_cell-kidney_loop_of_Henle_thin_descending_limb_epithelial_cell-Degenerative_Descending_Thin_Limb_Cell_Type_3|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

VCAN SYNE2

7.11e-041641121cb5fbd7050650047ad6f2ca792118e98d58d22b
ToppCellCerebellum-Endothelial-ENDOTHELIAL_STALK|Cerebellum / BrainAtlas - Mouse McCarroll V32

SHROOM4 THSD1

7.19e-041651127d319a112b9062efee428bef6f4534d2ce782e04
ToppCellBALF-PFMC-Severe-critical_progression_d12-22_no-steroids-Lymphocytic-Lymphocytic_T-CD8-positive,_alpha-beta_T_cell-T_CD8_c07-TYROBP|Severe-critical_progression_d12-22_no-steroids / Compartment, severity and other cell annotations on 10x 3' data (130k)

SYNE2 THSD1

7.37e-04167112ded4d6cccd3660662f12cf5a512de31d26325f1b
ToppCell356C-Endothelial_cells-Endothelial-B_(Artery)|356C / Donor, Lineage, Cell class and subclass (all cells)

SHROOM4 THSD1

7.54e-04169112605cc2638271803cf1d972ab3fa8f13f89666376
ToppCellPND03-Mesenchymal-Mesenchymal_structural-Fibroblastic-AF2-AF2_prolif|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

COL11A1 VCAN

7.54e-04169112335619507857383c3b0b507cdf05d786ed59e585
ToppCell356C-Endothelial_cells-Endothelial-B_(Artery)-|356C / Donor, Lineage, Cell class and subclass (all cells)

SHROOM4 THSD1

7.54e-04169112337be3bf485b54afad86e256cb0c4c1d0c2a9a2a
ToppCelldroplet-Skin-nan-18m-Epithelial-keratinocyte_stem_cell|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation

COL11A1 VCAN

7.63e-0417011210e0912dd0beab5d0bbe2bd49e477b5962687925
ToppCellURO-Lymphocyte-T_NK-gdT|URO / Disease, Lineage and Cell Type

PKD1L3 SYNE2

7.81e-0417211297b1eb95234639fcaa5ea3c4ba7ec2f4eb929dbf
ToppCell390C-Endothelial_cells-Endothelial-C_(Capillary_Aerocyte_)-|390C / Donor, Lineage, Cell class and subclass (all cells)

SHROOM4 THSD1

7.81e-04172112fd8097299fc05390b30afaa9e6c80b1f607c27aa
ToppCell390C-Endothelial_cells-Endothelial-C_(Capillary_Aerocyte_)|390C / Donor, Lineage, Cell class and subclass (all cells)

SHROOM4 THSD1

7.81e-041721126f302ed795767a9636081dc64373f8f039ea16d2
ToppCellMid-temporal_gyrus_(MTG)-Neuronal-Glutamatergic_Excit-Glut_C-D_(RORB)-Glut_D_(IT_RORB_THEMIS_LINC00507)_2-Exc_L3-4_RORB_PRSS12|Mid-temporal_gyrus_(MTG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

COL11A1 TDRD5

7.90e-041731128ac2e9d39c0f76e674f8bd59d1da246bab4867c8
ToppCelldroplet-Trachea-3m-Endothelial-endothelial_cell_of_trachea-tracheal_endothelial_cell-tracheal_endothelial_cell_28|3m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

SHROOM4 TDRP

7.90e-0417311266488d01e03264fb193285470901c9c4182fbae8
ToppCellILEUM-non-inflamed-(3)_Inf._Macrophages|non-inflamed / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)

PKD1L3 VCAN

7.90e-04173112a8db746992a915a8431ac5c155612e89c4af3cad
ToppCellTCGA-Thryoid-Primary_Tumor-Thyroid_Papillary_Carcinoma-Tall_Cell|TCGA-Thryoid / Sample_Type by Project: Shred V9

COL11A1 VCAN

7.90e-041731122e9dc137f3675eee07f941eb4cfcaf24a83ab0fb
ToppCellPND03-Mesenchymal-Mesenchymal_structural-Fibroblastic-Mesothelial|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

COL11A1 SYNE2

7.90e-0417311230d67738633493d47f06ae452424382f069b6c0a
ToppCellPND01-03-samps-Endothelial-Postnatal_endothelial-capillary_endothelial_Hpgd-CA4_high|PND01-03-samps / Age Group, Lineage, Cell class and subclass

SHROOM4 THSD1

7.99e-04174112cb0109661e8c9ca04d67d33f2d926f0e649bf67d
ToppCellPND03-Mesenchymal-Mesenchymal_structural-Fibroblastic-Mesothelial-Mesothelial_mature|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

COL11A1 SYNE2

7.99e-04174112a9c6edf5c3fc119c24425f921c5566a8356c30fe
ToppCellTCGA-Lung-Primary_Tumor-Lung_Carcinoma-Lung_Adenocarcinoma_Mixed_Subtype-4|TCGA-Lung / Sample_Type by Project: Shred V9

COL11A1 VCAN

8.18e-041761120923b01137d6f9956ca815b41102c81e82624065
ToppCell5'-Adult-Appendix-Endothelial-lymphatic_endothelial-LEC5_(CLDN11+)|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract

THSD1 TDRP

8.27e-041771123a85aa2bf3f2fdbea57d22d68e022cb3f6c2eb65
ToppCellTCGA-Ovary-Primary_Tumor-Ovarian_Carcinoma-Serous_Cystadenocarcinoma-6|TCGA-Ovary / Sample_Type by Project: Shred V9

COL11A1 VCAN

8.36e-04178112142879e9393e721f9b05a6bb46995c9d6d713c95
ToppCellTCGA-Colorectal-Primary_Tumor-Colorectal_Adenocarcinoma-Rectal_Adenocarcinoma-7|TCGA-Colorectal / Sample_Type by Project: Shred V9

SHROOM4 VCAN

8.36e-04178112edc76b8f15056ec1c9a1c61a048b6331a92592d6
ToppCellAdult-Endothelial-endothelial_cell_of_lymph_vessel-D231|Adult / Lineage, Cell type, age group and donor

PKD1L3 THSD1

8.36e-04178112c80ca7a2d3f976089a5e71d0cd9ba9a1c0bd2815
ToppCelldroplet-Fat-Bat-18m-Endothelial-nan|Fat / Fat_BAT_GAT_MAT_SCAT - method, tissue, subtissue, age, lineage, cell ontology and free annotation

THSD1 TDRP

8.46e-041791129863ab3ceb160a4b1d9790033a4ac48845863d65
ToppCelldroplet-Fat-Bat-18m-Endothelial|Fat / Fat_BAT_GAT_MAT_SCAT - method, tissue, subtissue, age, lineage, cell ontology and free annotation

THSD1 TDRP

8.46e-04179112dfe110add7228cd834b35916cbcc849769a01bb9
ToppCelldroplet-Fat-Bat-18m-Endothelial-endothelial_cell|Fat / Fat_BAT_GAT_MAT_SCAT - method, tissue, subtissue, age, lineage, cell ontology and free annotation

THSD1 TDRP

8.46e-04179112e6224864eb76a2e9c1fc0c61513d9e936bb5c72c
ToppCell3'_v3-lymph-node_spleen-Hematopoietic_Erythro-Mega|lymph-node_spleen / Manually curated celltypes from each tissue

PKD1L3 TDRP

8.46e-041791124e0cf069bc47328eda753a4edc7e89b8915d52bb
ToppCellSmart-start-Cell-Wel_seq-Neoplastic-Differentiated-like-MES-like-MES-like_hypoxia/MHC-G|Smart-start-Cell-Wel_seq / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group

COL11A1 TDRP

8.55e-04180112e4add4c94f892a2d93926e5c6dac6a738319d091
ToppCellCOVID-19-Endothelial_cells-Endothelial_cells_(other)|COVID-19 / group, cell type (main and fine annotations)

SHROOM4 SYNE2

8.64e-0418111226eb4ee57a70dbf54e096b73129fda9dfda1f6ec
ToppCellfacs-Brain_Non-Myeloid-Hippocampus_-18m-Macroglial|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

COL11A1 VCAN

8.64e-041811121037051eb82313c13346617b33f3c4c648181c4d
ToppCellPND07-28-samps-Endothelial-Postnatal_endothelial-capillary_endothelial_Hpgd-CA4_high|PND07-28-samps / Age Group, Lineage, Cell class and subclass

SHROOM4 THSD1

8.64e-041811129cd5e5c285c2b628db9d59709af053defd7c0aff
ToppCellrenal_cortex_nuclei-Adult_normal_reference-Epithelial-Renal_corpuscle_epithelial_cell-parietal_epithelial_cell|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

COL11A1 VCAN

8.64e-041811125f2d3a08577c440c944778d07aa993c6e7873f3d
ToppCelldroplet-Heart-nan-3m-Endothelial-coronary_vascular_endothelial_cell|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SHROOM4 SYNE2

8.64e-0418111292d44892bb15771f0ab5fe61879b204b0acbd9b3
ToppCellkidney_cells-Renal_AKI_(acute_kidney_injury)-Mesenchymal-Fibroblast-Collagen+matrisome-high_fibroblast|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

COL11A1 VCAN

8.64e-04181112c62b0a2422377ffadaab63edd538e87a06fa5017
ToppCellkidney_cells-Renal_AKI_(acute_kidney_injury)-Mesenchymal-Fibroblast-Collagen+matrisome-high_fibroblast-|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

COL11A1 VCAN

8.64e-04181112c6d2a13df3b74fade3b0c71e285b4c14c8e52413
ToppCellrenal_cortex_nuclei-Adult_normal_reference-Epithelial-Renal_corpuscle_epithelial_cell-parietal_epithelial_cell-Parietal_Epithelial_Cell|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

COL11A1 VCAN

8.64e-04181112c7c5f7d4c397b4613c772413a0a679377efffff3
ToppCellPND01-03-samps-Mesenchymal-Myofibroblast|PND01-03-samps / Age Group, Lineage, Cell class and subclass

COL11A1 VCAN

8.74e-04182112812dac35b9aa05be48258082e007f6c00e7b4dd8
ToppCelldroplet-Heart-nan-3m-Endothelial-endothelial_cell_of_coronary_artery|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SHROOM4 SYNE2

8.74e-0418211281279877b920b5a1bc991a07d3031d6458700fe3
ToppCell5'-Parenchyma_lung-Endothelial-Blood_vessel_EC-pulmonary_artery_endothelial_cell-EC_arterial-EC_arterial_L.2.4.1.1|5' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

SHROOM4 THSD1

8.83e-04183112ce8be9418b473ea94ec806edc7a2078cc30c1703
ToppCellTCGA-Thryoid-Primary_Tumor-Thyroid_Papillary_Carcinoma-Classical-1|TCGA-Thryoid / Sample_Type by Project: Shred V9

COL11A1 VCAN

8.83e-0418311206e4b05d86a7d643569e19575c2c9aa351d33f29
ToppCellMesenchymal_cells-Osteoblasts|Mesenchymal_cells / Lineage and Cell class

COL11A1 TDRP

8.83e-04183112d6b52d52fe9a7a6c798947f05420d79fe12e4662
ToppCelldroplet-Lung-18m-Hematologic-lymphocytic-CD8-positive,_alpha-beta_T_cell-CD8-positive,_alpha-beta_T_cell_l5|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

TDRD5 TDRP

8.83e-04183112159d9ca6a2b4512f28064d9227c83e343503ac14
ToppCell3'-Child09-12-SmallIntestine-Endothelial-blood_vessel_EC-Mature_arterial_EC|Child09-12 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SHROOM4 THSD1

8.93e-04184112842473fa415575441b595073a994b6d621169776
ToppCell3'_v3-lymph-node_spleen-Hematopoietic_Erythro-Mega-Megakaryocyte_early|lymph-node_spleen / Manually curated celltypes from each tissue

PKD1L3 TDRP

8.93e-0418411210607d7d92edcbb92d992900086b90b307421cc3
ToppCellPrimary_Visual_cortex_(V1C)-Non-neuronal-Macroglial-Oligo|Primary_Visual_cortex_(V1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SHROOM4 VCAN

8.93e-04184112a2191dd5546efd357b23e625beb3c5820476f243
ToppCellfacs-Thymus|facs / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

TDRD5 TDRP

8.93e-0418411258beef66bbbde2479ec69dfef392d5941cedf230
ToppCellMid-temporal_gyrus_(MTG)-Non-neuronal-Macroglial-Oligo-OPC|Mid-temporal_gyrus_(MTG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SHROOM4 VCAN

9.03e-041851127aaa8335b40927e3e8fdcede807cd521fc213a0d
ToppCellPrimary_Visual_cortex_(V1C)-Non-neuronal|Primary_Visual_cortex_(V1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SHROOM4 VCAN

9.03e-04185112b5277190866d9eb5b85eceaa5ba116ea6e6f286b
ToppCellMid-temporal_gyrus_(MTG)-Non-neuronal-Macroglial-Oligo-OPC-OPC_L1-6_MYT1|Mid-temporal_gyrus_(MTG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SHROOM4 VCAN

9.03e-041851122e1766f1a972fecd670daaaf7eb2d3a404f121e7
ToppCell356C-Endothelial_cells-Endothelial-E-|356C / Donor, Lineage, Cell class and subclass (all cells)

SHROOM4 THSD1

9.12e-041861122e024097ee361eeb1d855a4edb8ac8cdad35da06
ToppCell356C-Endothelial_cells-Endothelial-E|356C / Donor, Lineage, Cell class and subclass (all cells)

SHROOM4 THSD1

9.12e-04186112c3449e54454009973818fc1101933c6f0168258c
ComputationalGenes upregulated in subsets of cells of a given type within various tumors

COL11A1 VCAN

3.14e-045062GAVISH_3CA_METAPROGRAM_FIBROBLASTS_CAF_1
DiseaseFamilial thoracic aortic aneurysm and aortic dissection

COL11A1 VCAN

1.72e-0453112C4707243
DiseaseBack pain

ILRUN COL11A1

4.65e-0487112HP_0003418
Diseasecarpal tunnel syndrome

COL11A1 VCAN

4.86e-0489112EFO_0004143
Diseasegastroesophageal reflux disease

ILRUN VCAN

6.25e-04101112EFO_0003948
Diseasefibrinogen measurement

PKD1L3 COL11A1

7.28e-04109112EFO_0004623
Diseaseapolipoprotein B measurement

PKD1L3 ILRUN SYNE2

1.63e-03663113EFO_0004615
Diseaseskin aging measurement

PKD1L3 SYNE2

1.98e-03181112EFO_0008006
Diseasebody fat distribution

ILRUN VCAN

2.46e-03202112EFO_0004341
DiseaseDisorder of eye

COL11A1 VCAN

2.71e-03212112C0015397
Diseaseprostate carcinoma

PKD1L3 ILRUN SYNE2

3.78e-03891113EFO_0001663

Protein segments in the cluster

PeptideGeneStartEntry
KDWCFSTPKDTWDDS

TDRD5

781

Q8NAT2
STPKDTWDDSWQPSG

TDRD5

786

Q8NAT2
SKWSWDEDNTTSKPL

VCAN

801

P13611
SSWPKEKPGSWFSEF

COL11A1

1661

P12107
SSSKKSEEWPDWSEP

SCYL3

521

Q8IZE3
DSISKNTWAPAPDTW

ILRUN

236

Q9H6K1
EKAEPSPQSWSSLWK

SYNE2

4131

Q8WXH0
SKSPESDWSSWEAEG

SCYL1

686

Q96KG9
SKCEQPPWSSWDITK

PKD1L3

1021

Q7Z443
WWKAPDPSSSDPEKA

SHROOM4

701

Q9ULL8
PSWSGWEDDAKGSTK

TDRP

131

Q86YL5
EATDNSTPFPWWEKS

THSD1

106

Q9NS62