Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctionubiquitin-protein transferase activity

TRIM49D1 TRIM49 HERC1 TOPORS TRIM49B TRIM49C

2.88e-04473396GO:0004842
GeneOntologyMolecularFunctionRNA polymerase II transcription regulatory region sequence-specific DNA binding

ZNF711 ZNF398 PLAG1 CHD2 ZNF236 GFI1 ZNF639 ZNF574 LHX9 ZNF445

3.76e-0414593910GO:0000977
GeneOntologyMolecularFunctionubiquitin-like protein transferase activity

TRIM49D1 TRIM49 HERC1 TOPORS TRIM49B TRIM49C

4.39e-04512396GO:0019787
GeneOntologyMolecularFunctionaminoacyltransferase activity

TRIM49D1 TRIM49 HERC1 TOPORS TRIM49B TRIM49C

5.37e-04532396GO:0016755
GeneOntologyMolecularFunctionubiquitin protein ligase activity

TRIM49D1 TRIM49 TOPORS TRIM49B TRIM49C

7.47e-04372395GO:0061630
GeneOntologyMolecularFunctionubiquitin-like protein ligase activity

TRIM49D1 TRIM49 TOPORS TRIM49B TRIM49C

1.01e-03398395GO:0061659
GeneOntologyMolecularFunctionDNA-binding transcription factor activity, RNA polymerase II-specific

ZNF711 ZNF398 PLAG1 ZNF236 GFI1 ZNF639 ZNF574 LHX9 ZNF445

1.31e-031412399GO:0000981
GeneOntologyMolecularFunctioncyclin-dependent protein kinase activity

CDK11B CDK12

1.56e-0330392GO:0097472
GeneOntologyMolecularFunctioncyclin-dependent protein serine/threonine kinase activity

CDK11B CDK12

1.56e-0330392GO:0004693
GeneOntologyMolecularFunctionhistone binding

CHD2 PIH1D1 SPTY2D1 SPIN3

1.73e-03265394GO:0042393
GeneOntologyMolecularFunctionRNA polymerase II cis-regulatory region sequence-specific DNA binding

ZNF711 PLAG1 CHD2 ZNF236 GFI1 ZNF639 ZNF574 ZNF445

2.41e-031244398GO:0000978
GeneOntologyMolecularFunctioncis-regulatory region sequence-specific DNA binding

ZNF711 PLAG1 CHD2 ZNF236 GFI1 ZNF639 ZNF574 ZNF445

2.76e-031271398GO:0000987
GeneOntologyMolecularFunctionacyltransferase activity

TRIM49D1 TRIM49 HERC1 TOPORS TRIM49B TRIM49C

3.66e-03775396GO:0016746
Domain-

ZNF711 ZNF398 PLAG1 ZNF236 ZNF532 ZXDA GFI1 ZNF639 ZNF574 ZNF445

9.23e-0767939103.30.160.60
DomainSPRY

TRIM49D1 TRIM49 HERC1 TRIM49B TRIM49C

9.92e-0787395SM00449
DomainZnf_C2H2/integrase_DNA-bd

ZNF711 ZNF398 PLAG1 ZNF236 ZNF532 ZXDA GFI1 ZNF639 ZNF574 ZNF445

1.13e-066943910IPR013087
DomainSPRY

TRIM49D1 TRIM49 HERC1 TRIM49B TRIM49C

1.46e-0694395PF00622
DomainSPRY_dom

TRIM49D1 TRIM49 HERC1 TRIM49B TRIM49C

1.46e-0694395IPR003877
DomainB30.2/SPRY

TRIM49D1 TRIM49 HERC1 TRIM49B TRIM49C

1.54e-0695395IPR001870
DomainB302_SPRY

TRIM49D1 TRIM49 HERC1 TRIM49B TRIM49C

1.54e-0695395PS50188
DomainZINC_FINGER_C2H2_2

ZNF711 ZNF398 PLAG1 ZNF236 ZNF532 ZXDA GFI1 ZNF639 ZNF574 ZNF445

3.04e-067753910PS50157
DomainZINC_FINGER_C2H2_1

ZNF711 ZNF398 PLAG1 ZNF236 ZNF532 ZXDA GFI1 ZNF639 ZNF574 ZNF445

3.11e-067773910PS00028
DomainZnf_C2H2-like

ZNF711 ZNF398 PLAG1 ZNF236 ZNF532 ZXDA GFI1 ZNF639 ZNF574 ZNF445

3.86e-067963910IPR015880
DomainZnf_C2H2

ZNF711 ZNF398 PLAG1 ZNF236 ZNF532 ZXDA GFI1 ZNF639 ZNF574 ZNF445

4.26e-068053910IPR007087
DomainZnF_C2H2

ZNF711 ZNF398 PLAG1 ZNF236 ZNF532 ZXDA GFI1 ZNF639 ZNF574 ZNF445

4.41e-068083910SM00355
DomainBBOX

TRIM49D1 TRIM49 TRIM49B TRIM49C

1.27e-0569394SM00336
DomainButyrophylin

TRIM49D1 TRIM49 TRIM49B TRIM49C

1.35e-0570394IPR003879
Domain-

TRIM49D1 TRIM49 TRIM49B TRIM49C

1.43e-05713944.10.45.10
Domainzf-B_box

TRIM49D1 TRIM49 TRIM49B TRIM49C

1.51e-0572394PF00643
DomainZF_BBOX

TRIM49D1 TRIM49 TRIM49B TRIM49C

2.29e-0580394PS50119
DomainZnf_B-box

TRIM49D1 TRIM49 TRIM49B TRIM49C

2.41e-0581394IPR000315
Domainzf-C2H2

ZNF711 ZNF398 ZNF236 ZXDA GFI1 ZNF639 ZNF574 ZNF445

7.65e-05693398PF00096
DomainConA-like_dom

TRIM49D1 TRIM49 HERC1 TRIM49B TRIM49C

8.81e-05219395IPR013320
DomainZF_RING_2

TRIM49D1 TRIM49 TOPORS TRIM49B TRIM49C

3.69e-04298395PS50089
DomainRING

TRIM49D1 TRIM49 TOPORS TRIM49B TRIM49C

4.10e-04305395SM00184
Domainzf-C2H2_6

ZNF236 ZNF532 GFI1 ZNF574 ZNF445

4.69e-04314395PF13912
DomainZnf_RING

TRIM49D1 TRIM49 TOPORS TRIM49B TRIM49C

5.56e-04326395IPR001841
Domain-

TRIM49D1 TRIM49 TOPORS TRIM49B TRIM49C

2.31e-034493953.30.40.10
DomainZnf_RING/FYVE/PHD

TRIM49D1 TRIM49 TOPORS TRIM49B TRIM49C

2.54e-03459395IPR013083
DomainZF_RING_1

TRIM49 TOPORS TRIM49B TRIM49C

3.09e-03291394PS00518
Pubmed

Identification of a genomic reservoir for new TRIM genes in primate genomes.

TRIM49D1 TRIM49 TRIM49B TRIM49C

5.74e-091940422144910
Pubmed

Lineage-specific biology revealed by a finished genome assembly of the mouse.

ZNF711 TRIM49 TRIM49B TRIM49C

4.90e-075540419468303
Pubmed

Trim43a, Trim43b, and Trim43c: Novel mouse genes expressed specifically in mouse preimplantation embryos.

TRIM49 TRIM49B TRIM49C

6.35e-071540319703589
Pubmed

Functional proteomics mapping of a human signaling pathway.

PLAG1 HERC1 TNKS2 TOPORS CDK12 DROSHA CUEDC1

4.53e-0659140715231748
Pubmed

Multidimensional Proteomics Reveals a Role of UHRF2 in the Regulation of Epithelial-Mesenchymal Transition (EMT).

CHD2 CDK11B ZNF574

3.55e-055540327114453
Pubmed

Cyclin-dependent kinases: a family portrait.

CDK11B CDK12

8.45e-051240219884882
Pubmed

Human chromosome 11 DNA sequence and analysis including novel gene identification.

TRIM49D1 TRIM49 TRIM49C

1.09e-048040316554811
Pubmed

Proteomic analysis of steady-state nuclear hormone receptor coactivator complexes.

HERC1 CDK12 ZNF639

1.30e-048540316051665
Pubmed

A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract.

PLAG1 ZNF532 PLXNC1 ZNF639 LHX9 ZNF445

1.49e-0470940622988430
Pubmed

A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation.

ZNF711 ZXDA

2.42e-042040219377476
Pubmed

Positional cloning of the mouse saccharin preference (Sac) locus.

AURKAIP1 CDK11B

2.94e-042240211555487
Pubmed

Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst.

ZNF398 PLAG1 ZNF236 PLXNC1 ZNF639 ZNF445

3.02e-0480840620412781
Pubmed

Same but different - Molecular comparison of human KTI12 and PSTK.

RAB3GAP1 SPIN3

4.45e-042740233417976
Pubmed

The RNA binding protein MEX3A promotes tumor progression of breast cancer by post-transcriptional regulation of IGFBP4.

UTP23 PLAG1 TNRC18 AURKAIP1

5.68e-0433240437433992
Pubmed

HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation.

CHD2 AURKAIP1 CDK11B CDK12 DROSHA SPTY2D1 ZNF574

8.68e-04137140736244648
CytobandEnsembl 112 genes in cytogenetic band chr11q14

TRIM49D1 TRIM49 TRIM49C

3.47e-04156403chr11q14
Cytoband11q14.3

TRIM49D1 TRIM49C

3.61e-043240211q14.3
Cytoband1p36.33

AURKAIP1 CDK11B

2.08e-03774021p36.33
CytobandEnsembl 112 genes in cytogenetic band chr5p13

C6 DROSHA

6.58e-03139402chr5p13
GeneFamilyZinc fingers C2H2-type|ZF class homeoboxes and pseudogenes

ZNF711 ZNF398 PLAG1 ZNF236 ZNF532 ZXDA GFI1 ZNF639 ZNF574 ZNF445

6.28e-08718281028
GeneFamilyRing finger proteins|Tripartite motif containing|ARF GTPase family

TRIM49D1 TRIM49 TRIM49B TRIM49C

1.33e-059528459
GeneFamilyRing finger proteins

TRIM49D1 TRIM49 TOPORS TRIM49B TRIM49C

5.79e-0527528558
GeneFamilyCyclin dependent kinases

CDK11B CDK12

7.35e-0426282496
CoexpressionAtlasDevelopingGonad_e16.5_ovary_emap-9563_top-relative-expression-ranked_500

ZNF711 CHD2 HERC1 PLXNC1 LHX9 ZNF445

3.08e-05387346gudmap_developingGonad_e16.5_ovary_500
CoexpressionAtlasDevelopingGonad_e12.5_epididymis_emap-29139_top-relative-expression-ranked_500

CHD2 TNRC18 HERC1 PLXNC1 LHX9 ZNF445

3.86e-05403346gudmap_developingGonad_e12.5_epididymis_500
CoexpressionAtlasDevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k-means-cluster#4_top-relative-expression-ranked_1000

ZNF398 PLAG1 TNKS2 CDK12 SPTY2D1

5.61e-05261345gudmap_developingKidney_e15.5_Medullary collecting duct_1000_k4
CoexpressionAtlasDevelopingGonad_e12.5_epididymis_emap-29139_k-means-cluster#5_top-relative-expression-ranked_500

CHD2 TNRC18 HERC1 ZNF445

9.41e-05150344gudmap_developingGonad_e12.5_epididymis_k5_500
CoexpressionAtlasDevelopingLowerUrinaryTract_e13.5_bladder mesenchyme_emap-3087_k-means-cluster#4_top-relative-expression-ranked_500

TNKS2 CDK12 SPTY2D1

1.09e-0458343gudmap_developingLowerUrinaryTract_e13.5_bladder mesenchyme_500_k4
CoexpressionAtlasDevelopingGonad_e16.5_epididymis_emap-29702_top-relative-expression-ranked_1000

ZNF711 CHD2 TNRC18 HERC1 TOPORS CDK12 ZNF445

2.15e-04790347gudmap_developingGonad_e16.5_epididymis_1000
CoexpressionAtlasDevelopingGonad_e14.5_ epididymis_emap-29141_top-relative-expression-ranked_1000

ZNF711 CHD2 TNRC18 HERC1 TOPORS LHX9 ZNF445

2.34e-04801347gudmap_developingGonad_e14.5_ epididymis_1000
CoexpressionAtlasDevelopingGonad_e12.5_ovary_emap-28876_top-relative-expression-ranked_1000

ZNF711 CHD2 HERC1 TOPORS PLXNC1 LHX9 ZNF445

2.39e-04804347gudmap_developingGonad_e12.5_ovary_1000
CoexpressionAtlasDevelopingGonad_e12.5_epididymis_emap-29139_top-relative-expression-ranked_1000

CHD2 TNRC18 HERC1 TOPORS PLXNC1 LHX9 ZNF445

2.43e-04806347gudmap_developingGonad_e12.5_epididymis_1000
CoexpressionAtlasDevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k-means-cluster#5_top-relative-expression-ranked_1000

PLAG1 TNKS2 CDK12 SPTY2D1

2.89e-04201344gudmap_developingKidney_e15.5_Pelvic Mesenchyme_1000_k5
CoexpressionAtlasFacebaseRNAseq_e10.5_Neural Epithelium Overlying Medial Eminence_top-relative-expression-ranked_2500_k-means-cluster#4

ZNF711 CHD2 CDK11B TNKS2 PLXNC1 ZNF445

3.25e-04595346Facebase_RNAseq_e10.5_Neural Epithelium Overlying Medial Eminence_2500_K4
CoexpressionAtlasDevelopingKidney_e15.5_Endothelial cells_emap-29965_k-means-cluster#5_top-relative-expression-ranked_1000

TNKS2 CDK12 SPTY2D1

3.27e-0484343gudmap_developingKidney_e15.5_Endothelial cells_1000_k5
CoexpressionAtlasDevelopingGonad_e18.5_ovary_emap-12283_top-relative-expression-ranked_500

ZNF711 CHD2 HERC1 PLXNC1 LHX9

3.53e-04387345gudmap_developingGonad_e18.5_ovary_500
CoexpressionAtlasdev gonad_e11.5_F_GonMes_Sma_top-relative-expression-ranked_1000

ZNF711 PLAG1 TNRC18 TOPORS PLXNC1 SPTY2D1 LHX9

3.55e-04858347gudmap_dev gonad_e11.5_F_GonMes_Sma_1000
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ Genital tubercle_emap-6706_k-means-cluster#2_top-relative-expression-ranked_500

PLAG1 TNKS2 CDK12

3.88e-0489343gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle_500_k2
CoexpressionAtlasFacebaseRNAseq_e10.5_Maxillary Arch_top-relative-expression-ranked_2500_k-means-cluster#5

ZNF711 CHD2 CCPG1 CDK11B TNKS2 ZNF445

4.37e-04629346Facebase_RNAseq_e10.5_Maxillary Arch_2500_K5
CoexpressionAtlasDevelopingKidney_e15.5_stage III -IV renal corpusc_emap-27945_k-means-cluster#5_top-relative-expression-ranked_1000

PLAG1 TNKS2 CDK12 SPTY2D1

4.51e-04226344gudmap_developingKidney_e15.5_stage III -IV renal corpusc_1000_k5
CoexpressionAtlasDevelopingKidney_e15.5_stage III -IV renal corpusc_emap-27945_k-means-cluster#4_top-relative-expression-ranked_500

PLAG1 TNKS2 SPTY2D1

6.46e-04106343gudmap_developingKidney_e15.5_stage III -IV renal corpusc_500_k4
CoexpressionAtlasFacebaseRNAseq_e8.5_Floor Plate_top-relative-expression-ranked_1000_k-means-cluster#1

CCPG1 CDK11B PLXNC1 CDK12

7.52e-04259344Facebase_RNAseq_e8.5_Floor Plate_1000_K1
CoexpressionAtlasDevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k-means-cluster#3_top-relative-expression-ranked_500

PLAG1 TNKS2 SPTY2D1

8.40e-04116343gudmap_developingKidney_e15.5_Pelvic Mesenchyme_500_k3
CoexpressionAtlasFacebaseRNAseq_e8.5_Floor Plate_top-relative-expression-ranked_2500_k-means-cluster#1

CCPG1 CDK11B TNKS2 TOPORS CDK12

8.44e-04469345Facebase_RNAseq_e8.5_Floor Plate_2500_K1
CoexpressionAtlasDevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k-means-cluster#3_top-relative-expression-ranked_500

PLAG1 TNKS2 CDK12

8.61e-04117343gudmap_developingKidney_e15.5_Medullary collecting duct_500_k3
ToppCellTCGA-Testes-Primary_Tumor-Testicular_Germ_Cell_Tumor-Non-Seminoma-_Embryonal_Carcinoma|TCGA-Testes / Sample_Type by Project: Shred V9

ZNF398 TRIM49 AURKAIP1 TRIM49B

7.31e-061394046b58d01ce9d9ac23434333f9faf1bb0eef14ba90
Diseaselow density lipoprotein cholesterol measurement, alcohol consumption measurement

RAB3GAP1 SPTY2D1

6.88e-0399372EFO_0004611, EFO_0007878
Diseaselow density lipoprotein cholesterol measurement, alcohol drinking

RAB3GAP1 SPTY2D1

7.28e-03102372EFO_0004329, EFO_0004611
Diseaseeosinophil measurement

ZNF398 GFI1

8.13e-03108372EFO_0803540

Protein segments in the cluster

PeptideGeneStartEntry
KHKRHKSKHSKDMGL

CDK12

41

Q9NYV4
MSRKEKAHHRKDEKR

CDK11B

91

P21127
SNMVHTAKKKIRKHR

RAB3GAP1

381

Q15042
GKRFHQKSDMKKHTF

GFI1

346

Q99684
AKMAFRHFKIHVRKS

SPATA18

346

Q8TC71
MGKQSTKRHEKKHRH

HERC1

2406

Q15751
KRHRGKHKFKVKEMY

PLXNC1

1336

O60486
LKASMKYVKVRHKAR

KIAA0232

306

Q92628
KTKRMRTSFKHHQLR

LHX9

266

Q9NQ69
LKKLMRFHHKSTKIK

OR2W1

301

Q9Y3N9
DKLKHMGKSTRRKLF

CUEDC1

306

Q9NWM3
KMRKSKRKHLLKHQS

CUEDC1

331

Q9NWM3
MKNSTKEFVRHHKEK

CCPG1

496

Q9ULG6
SHKKDSSFIRIHKVM

C6

306

P13671
RKLHKLYKMAHKKRS

CHD2

1546

O14647
VRKGLHSFKMAFVKH

DSCR8

11

Q96T75
KMKERKRHLGDTKHF

AK9

921

Q5TCS8
MKITRQKHAKKHLGF

UTP23

1

Q9BRU9
KYGDRKVHHMHMRKK

DROSHA

926

Q9NRR4
KEIFHRLHLSKAKMA

TRIM49

206

P0CI25
HESKAAFHRKRKQLM

PIH1D1

266

Q9NWS0
LKHDKKARAMAKRTK

SPTY2D1

76

Q68D10
RKMNHHKYRKLVKKT

AURKAIP1

136

Q9NWT8
RFGRKDHLTRHMKKS

PLAG1

221

Q6DJT9
HKRAAKTRKMEVGFK

TNRC18

1696

O15417
ISHVRKEHGKQMKKH

ZNF532

1041

Q9HCE3
FSDLKQHMILKHKRT

ZNF639

216

Q9UID6
TMIKRKAAHKKHRSR

SPIN3

26

Q5JUX0
KEIFHRLHLSKAKMA

TRIM49C

206

P0CI26
KSFIRKHHLMKHQRI

ZNF398

546

Q8TD17
GKMFKKKSHVRNHLR

ZNF574

501

Q6ZN55
KDCLAKHLKHMRRMY

TTLL2

156

Q9BWV7
RIKKHLSLEMVNFKH

TNKS2

346

Q9H2K2
AKIRKMKVTTKINHH

NPIPB2

136

A6NJ64
RSAFIVHKKKHAMKR

ZNF445

721

P59923
FTSMSKLLRHKRKHD

ZXDA

461

P98168
RKHHGKKRMKSKRSR

TOPORS

616

Q9NS56
KDIFHRLHLSKAKMA

TRIM49D1

206

C9J1S8
CRKAFKRATHLKEHM

ZNF236

1691

Q9UL36
KDIFHRLHLSKAKMA

TRIM49B

206

A6NDI0
KFKSRGFLKRHMKNH

ZNF711

391

Q9Y462