Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyBiologicalProcesscell projection assembly

CDC42EP4 NUP85 FGD2 IFT81 FBF1 EHD1 IFT122 SCIN MAP4K4 IQUB EVI5L DNM2 DNAH1

7.36e-066858913GO:0030031
GeneOntologyBiologicalProcessplasma membrane bounded cell projection assembly

CDC42EP4 NUP85 FGD2 IFT81 FBF1 EHD1 IFT122 MAP4K4 IQUB EVI5L DNM2 DNAH1

3.02e-056708912GO:0120031
DomainSpectrin_repeat

SPTA1 MCF2 MACF1

4.23e-0429953IPR002017
DomainSpectrin/alpha-actinin

SPTA1 MCF2 MACF1

5.68e-0432953IPR018159
DomainSPEC

SPTA1 MCF2 MACF1

5.68e-0432953SM00150
DomainVillin/Gelsolin

FLII SCIN

7.03e-048952IPR007122
DomainGEL

FLII SCIN

7.03e-048952SM00262
Domain-

MYL5 TCHHL1 SPTA1 DYTN EHD1 MACF1

2.17e-032619561.10.238.10
DomainGelsolin

FLII SCIN

2.24e-0314952PF00626
DomainG_DYNAMIN_dom

EHD1 DNM2

2.24e-0314952IPR030381
DomainGelsolin-like_dom

FLII SCIN

2.24e-0314952IPR007123
DomainG_DYNAMIN_2

EHD1 DNM2

2.24e-0314952PS51718
Domain-

KDM5C ARID5B

2.57e-03159521.10.150.60
DomainDynamin_GTPase

EHD1 DNM2

2.57e-0315952IPR001401
DomainBRIGHT

KDM5C ARID5B

2.57e-0315952SM00501
DomainDynamin_N

EHD1 DNM2

2.57e-0315952PF00350
DomainARID_dom

KDM5C ARID5B

2.57e-0315952IPR001606
DomainARID

KDM5C ARID5B

2.57e-0315952PS51011
DomainARID

KDM5C ARID5B

2.57e-0315952PF01388
DomainDynamin_SF

EHD1 DNM2

2.57e-0315952IPR022812
DomainEF-hand-dom_pair

MYL5 TCHHL1 SPTA1 DYTN EHD1 MACF1

3.46e-03287956IPR011992
DomainGAGE

PAGE2 PAGE2B

4.14e-0319952IPR031320
DomainGAGE

PAGE2 PAGE2B

4.14e-0319952SM01379
DomainSpectrin

SPTA1 MACF1

6.04e-0323952PF00435
DomainKinase-like_dom

PI4KA SYK SIK2 MACF1 LCK MAP4K4 MUSK DNM2

6.38e-03542958IPR011009
DomainEF_HAND_2

MYL5 TCHHL1 SPTA1 EHD1 MACF1

6.52e-03231955PS50222
DomainADF-H/Gelsolin-like_dom

FLII SCIN

6.57e-0324952IPR029006
Domain-

FLII SCIN

6.57e-03249523.40.20.10
DomainGAGE

PAGE2 PAGE2B

6.57e-0324952PF05831
Pubmed

Chr21 protein-protein interactions: enrichment in proteins involved in intellectual disability, autism, and late-onset Alzheimer's disease.

FLII USP13 MAGED1 GAMT TCOF1 IFT81 ARID5B APBB2 MACF1 IFT122 CMYA5 METTL26 MAP4K4 YWHAH CUX1 DNM2 DNMT1

7.94e-081285961735914814
Pubmed

Identifications of novel host cell factors that interact with the receptor-binding domain of the SARS-CoV-2 spike protein.

A2M USP13 MAGED1 CLCN3 NUP85 UPF2 SIK2 IFT122 QSER1 MAP4K4 DNM2 DNMT1

2.46e-07650961238777146
Pubmed

In-Depth In Vivo Crosslinking in Minutes by a Compact, Membrane-Permeable, and Alkynyl-Enrichable Crosslinker.

CLCN3 NUP85 TCHHL1 SPTA1 IFT81 FBF1 MACF1 SMARCD2 BRD3 IFT122 TOP1MT EPX PDIA3 YWHAH PLXNA2 CUX1 TASOR2

4.03e-071442961735575683
Pubmed

Comprehensive interactome profiling of the human Hsp70 network highlights functional differentiation of J domains.

CHMP7 MAGED1 TCOF1 DSG2 PI4KA IFT81 SLMAP SIK2 MACF1 IFT122 MAP4K4 PDIA3 GNL3 CUX1 DNMT1 C19orf25 HDLBP

6.17e-071487961733957083
Pubmed

A central chaperone-like role for 14-3-3 proteins in human cells.

CDC42EP4 DSG2 PHF3 ATG13 PI4KA SIK2 MACF1 LCK MAP4K4 YWHAH MUSK DNMT1 AHNAK2

7.29e-07861961336931259
Pubmed

Identifying biological pathways that underlie primordial short stature using network analysis.

FLII NUP85 TCOF1 DSG2 PI4KA MKI67 MACF1 RFC2 SCIN MAP4K4 PDIA3 YWHAH GNL3 HDLBP

8.56e-071024961424711643
Pubmed

HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation.

A2M FLII UPF2 TCOF1 DSG2 TCHHL1 PHF3 EHD1 MKI67 SMARCD2 RFC2 MIDEAS PDIA3 GNL3 DNMT1 HDLBP

1.06e-061371961636244648
Pubmed

Defining the proximal interaction networks of Arf GTPases reveals a mechanism for the regulation of PLD1 and PI4KB.

FAT4 CDC42EP4 TCOF1 DSG2 PI4KA EHD1 MKI67 APBB2 ARL15 CUX1 TASOR2 DNMT1

1.60e-06777961235844135
Pubmed

Targeting USP10 induces degradation of oncogenic ANLN in esophageal squamous cell carcinoma.

A2M FLII NUP85 UPF2 DSG2 PHF3 SLMAP MKI67 SMARCD2 RFC2 YWHAH GNL3 TASOR2 DNMT1 HDLBP

1.82e-061257961536526897
Pubmed

The cell proliferation antigen Ki-67 organises heterochromatin.

NUP85 TAF9B TCOF1 PI4KA EHD1 MKI67 SMARCD2 QSER1 GNL3

2.11e-0641096926949251
Pubmed

SRCAP complex promotes lung cancer progression by reprograming the oncogenic transcription of Hippo-YAP/TAZ signaling pathway.

TAF9B TCOF1 DSG2 PHF3 QSER1 MIDEAS MAP4K4 CUX1 DNMT1 HDLBP

2.96e-06549961038280479
Pubmed

A Degradation Motif in STAU1 Defines a Novel Family of Proteins Involved in Inflammation.

FLII MAGED1 EIF4ENIF1 UPF2 PHF3 MKI67 PLEKHJ1 MACF1 SMARCD2 AHNAK2 HDLBP

5.23e-06724961136232890
Pubmed

SLFN11 promotes CDT1 degradation by CUL4 in response to replicative DNA damage, while its absence leads to synthetic lethality with ATR/CHK1 inhibitors.

FLII NUP85 KDM5C MKI67 MSH5 RFC2 TOP1MT

6.31e-0625096733536335
Pubmed

The in vivo Interaction Landscape of Histones H3.1 and H3.3.

PHF3 MKI67 SMARCD2 BRD3 QSER1 RFC2 MIDEAS GNL3 CUX1 DNMT1

7.26e-06608961036089195
Pubmed

DNA hypomethylation perturbs the function and survival of CNS neurons in postnatal animals.

FGF8 DNMT1

7.54e-06296211157065
Pubmed

Functional and behavioral effects of de novo mutations in calcium-related genes in patients with bipolar disorder.

EHD1 MACF1

7.54e-06296234100076
Pubmed

Hypoxia regulates cross-talk between Syk and Lck leading to breast cancer progression and angiogenesis.

SYK LCK

7.54e-06296216474166
Pubmed

Regulation of the Lck SH2 domain by tyrosine phosphorylation.

SYK LCK

7.54e-0629628798764
Pubmed

Identification of the site in the Syk protein tyrosine kinase that binds the SH2 domain of Lck.

SYK LCK

7.54e-0629628798676
Pubmed

Alpha-1 antichymotrypsin and alpha-2 macroglobulin gene polymorphisms are not associated with Korean late-onset Alzheimer's disease.

A2M SERPINA3

7.54e-06296211290389
Pubmed

RNF43 inhibits WNT5A-driven signaling and suppresses melanoma invasion and resistance to the targeted therapy.

MAGED1 EIF4ENIF1 MKI67 MACF1 MAP4K4 PDIA3 AHNAK2

8.77e-0626396734702444
Pubmed

Large-scale characterization of HeLa cell nuclear phosphoproteins.

FLII EXO5 TCOF1 PHF3 KDM5C MKI67 BRD3 MAP4K4 DNM2 DNMT1 HDLBP

9.79e-06774961115302935
Pubmed

Impaired plasma membrane localization of ubiquitin ligase complex underlies 3-M syndrome development.

A2M ARID5B SIK2 MACF1 LCK MIDEAS GNL3 TASOR2 DNAH1

9.82e-0649696931343991
Pubmed

Proximity-dependent Mapping of the Androgen Receptor Identifies Kruppel-like Factor 4 as a Functional Partner.

TAF9B PHF3 ARID5B SMARCD2 QSER1 MIDEAS CUX1

9.91e-0626896733640491
Pubmed

Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.

EIF4ENIF1 TAF9B TCOF1 DSG2 KDM5C FBF1 MACF1 SMARCD2 BRD3 RFC2 YWHAH GNL3 EVI5L

1.22e-051116961331753913
Pubmed

H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.

C14orf93 TAF9B TCOF1 PHF3 SPTA1 ARID5B MKI67 BRD3 QSER1 RFC2 MIDEAS GNL3 CUX1 DNMT1

1.26e-051294961430804502
Pubmed

ASPM regulates symmetric stem cell division by tuning Cyclin E ubiquitination.

FAT2 MKI67 CUX1

1.35e-051796326581405
Pubmed

Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing.

TSHZ2 ATG13 ARID5B APBB2 MACF1 KYAT3 IFT122 MSH5 QSER1 ARL15 GNL3 CUX1 EVI5L TASOR2 DNAH1

1.39e-051489961528611215
Pubmed

Complementary proteomics strategies capture an ataxin-1 interactome in Neuro-2a cells.

NUP85 TCOF1 EHD1 BRD3 RFC2 MAP4K4 YWHAH GNL3 DNMT1 HDLBP

1.57e-05665961030457570
Pubmed

Requirement of FAT and DCHS protocadherins during hypothalamic-pituitary development.

FAT4 FAT2 MKI67

1.61e-051896333108146
Pubmed

Pre-T cell receptor signals are responsible for the down-regulation of Syk protein tyrosine kinase expression.

SYK LCK

2.26e-05396210453000
Pubmed

A function for cyclin D1 in DNA repair uncovered by protein interactome analyses in human cancers.

FLII ARID5B MKI67 RFC2 DNMT1

2.60e-0512596521654808
Pubmed

The phosphorylation of HIV-1 Gag by atypical protein kinase C facilitates viral infectivity by promoting Vpr incorporation into virions.

SYK LCK MUSK

3.02e-052296324447338
Pubmed

Protective function of the SQSTM1/p62-NEDD4 complex against methylmercury toxicity.

PDIA3 YWHAH

4.51e-05496235452957
Pubmed

Silencing of NRAGE induces autophagy via AMPK/Ulk1/Atg13 signaling pathway in NSCLC cells.

MAGED1 ATG13

4.51e-05496228639909
Pubmed

Syk and ZAP-70 mediate recruitment of p56lck/CD4 to the activated T cell receptor/CD3/zeta complex.

SYK LCK

4.51e-0549627539035
Pubmed

Complex formation between human kallikrein 13 and serum protease inhibitors.

A2M SERPINA3

4.51e-05496214687906
Pubmed

GTF2I dosage regulates neuronal differentiation and social behavior in 7q11.23 neurodevelopmental disorders.

MKI67 CUX1

4.51e-05496238019906
Pubmed

HSF1 phosphorylation establishes an active chromatin state via the TRRAP-TIP60 complex and promotes tumorigenesis.

A2M FLII FAT4 NUP85 TCOF1 PI4KA MKI67 PDIA3 HCCS HDLBP

4.56e-05754961035906200
Pubmed

N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective.

TCOF1 DSG2 MKI67 MACF1 SCIN PDIA3 GNL3 DNM2 DNMT1 AHNAK2 HDLBP

5.45e-05934961133916271
Pubmed

The MEV mouse linkage testing stock: mapping 30 novel proviral insertions and establishment of an improved stock.

SERPINA3 SPTA1 LCK

5.68e-05279638390965
Pubmed

An Interaction Landscape of Ubiquitin Signaling.

USP13 USP38 TCOF1 SLMAP MACF1 DNM2 DNMT1 HDLBP

5.78e-0548196828190767
Pubmed

ALS/FTD-causing mutation in cyclin F causes the dysregulation of SFPQ.

FLII ST13P4 MAGED1 DSG2 LCK PDIA3 GNL3 TASOR2 HDLBP

5.90e-0562496933729478
Pubmed

A High-Density Human Mitochondrial Proximity Interaction Network.

CHMP7 FLII EIF4ENIF1 NUP85 UPF2 PI4KA SLMAP PDIA3 HCCS YWHAH GNL3 CUX1 AHNAK2 C19orf25

6.16e-051496961432877691
Pubmed

Phosphoproteomic analysis of the developing mouse brain.

CHMP7 FAT4 EIF4ENIF1 TCOF1 PHF3 MAP4K4

6.42e-0524696615345747
Pubmed

N-Terminomics for the Identification of In Vitro Substrates and Cleavage Site Specificity of the SARS-CoV-2 Main Protease.

FLII TCOF1 DSG2 SLMAP MACF1 DNM2 AHNAK2

6.50e-0536096733111431
Pubmed

A protein interaction landscape of breast cancer.

TCOF1 DSG2 PI4KA EHD1 MKI67 MACF1 SMARCD2 DNM2 HDLBP

6.66e-0563496934591612
Pubmed

Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders.

FLII MAGED1 TCOF1 PI4KA MACF1 QSER1 MAP4K4 YWHAH CUX1 DNM2 DNMT1

7.16e-05963961128671696
Pubmed

Proteomic and Biochemical Comparison of the Cellular Interaction Partners of Human VPS33A and VPS33B.

FLII EIF4ENIF1 UPF2 SLMAP MAP4K4 DNM2

7.17e-0525196629778605
Pubmed

Human glandular kallikrein, hK2, shows arginine-restricted specificity and forms complexes with plasma protease inhibitors.

A2M SERPINA3

7.50e-0559629428387
Pubmed

Disc1 point mutations in mice affect development of the cerebral cortex.

MKI67 CUX1

7.50e-05596221368031
Pubmed

Methylation of the PTPRO gene in human hepatocellular carcinoma and identification of VCP as its substrate.

SPTA1 SYK

7.50e-05596223533167
Pubmed

Phosphatidylinositol (PI) 3-kinase and PI 4-kinase binding to the CD4-p56lck complex: the p56lck SH3 domain binds to PI 3-kinase but not PI 4-kinase.

PI4KA LCK

7.50e-0559628246987
Pubmed

Selective regulation of Lyn tyrosine kinase by CD45 in immature B cells.

SYK LCK

7.50e-0559627499277
Pubmed

Genetic risk factors of sporadic Alzheimer's disease among Chinese in Taiwan.

A2M SERPINA3

7.50e-05596211099722
Pubmed

Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription.

TCOF1 PHF3 MKI67 MACF1 GNL3 DNM2 TASOR2 DNMT1 HDLBP

8.33e-0565396922586326
Pubmed

A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein.

TCOF1 RFC2 DNMT1

8.66e-053196312171929
Pubmed

Proteomic profiling of VCP substrates links VCP to K6-linked ubiquitylation and c-Myc function.

FLII UPF2 PI4KA EHD1 MKI67 MACF1 RFC2 MIDEAS PDIA3 GNL3 DNMT1 AHNAK2 HDLBP

8.88e-051353961329467282
Pubmed

The ubiquitin ligase Uhrf2 is a master regulator of cholesterol biosynthesis and is essential for liver regeneration.

PHF3 MKI67 TASOR2 HDLBP

9.73e-058696437253089
Pubmed

Cenpj Regulates Cilia Disassembly and Neurogenesis in the Developing Mouse Cortex.

FBF1 MKI67 CUX1

1.05e-043396330626697
Pubmed

Multiplexed barcoded CRISPR-Cas9 screening enabled by CombiGEM.

KDM5C BRD3 DNMT1

1.05e-043396326864203
Pubmed

DNA Methyltransferase 1 Is Indispensable for Development of the Hippocampal Dentate Gyrus.

MKI67 DNMT1

1.12e-04696227251626
Pubmed

Lhx9 gene expression during early limb development in mice requires the FGF signalling pathway.

MKI67 FGF8

1.12e-04696226220830
Pubmed

Roles of Lck, Syk and ZAP-70 tyrosine kinases in TCR-mediated phosphorylation of the adapter protein Shc.

SYK LCK

1.12e-0469629710204
Pubmed

Joint analysis of candidate genes related to Alzheimer's disease in a Spanish population.

A2M SERPINA3

1.12e-04696212782964
Pubmed

Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer.

USP13 ST13P4 PHF3 KDM5C MKI67 SMARCD2 BRD3 QSER1 RFC2 GNL3 DNMT1

1.13e-041014961132416067
Pubmed

Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains.

FLII TAF9B MKI67 SMARCD2 BRD3 RFC2 GNL3 DNMT1

1.18e-0453396830554943
Pubmed

Two-Dimensional Fractionation Method for Proteome-Wide Cross-Linking Mass Spectrometry Analysis.

ST13P4 UPF2 MACF1 SMARCD2 RFC2 HSP90AA5P MAP4K4 YWHAH DNM2 DNMT1

1.19e-04847961035235311
Pubmed

Identification and functional characterization of transcriptional activators in human cells.

FLII ARID5B SMARCD2 BRD3 IFT122 CUX1 DNMT1

1.21e-0439896735016035
Pubmed

Identification of the BRD1 interaction network and its impact on mental disorder risk.

QSER1 YWHAH DNMT1

1.25e-043596327142060
Pubmed

BioID reveals an ATG9A interaction with ATG13-ATG101 in the degradation of p62/SQSTM1-ubiquitin clusters.

DSG2 ATG13 EHD1 APBB2 PLEKHJ1 SCIN

1.44e-0428596634369648
Pubmed

NOBOX deficiency disrupts early folliculogenesis and oocyte-specific gene expression.

FGF8 MSH5 DNMT1

1.48e-043796315326356
Pubmed

The functional interactome landscape of the human histone deacetylase family.

NUP85 ARID5B MKI67 MIDEAS PDIA3 YWHAH

1.55e-0428996623752268
Pubmed

USP13 promotes deubiquitination of ZHX2 and tumorigenesis in kidney cancer.

USP13 USP38

1.57e-04796236037364
Pubmed

SHP2-interacting transmembrane adaptor protein (SIT), a novel disulfide-linked dimer regulating human T cell activation.

SYK LCK

1.57e-04796210209036
Pubmed

Expression of mouse dchs1, fjx1, and fat-j suggests conservation of the planar cell polarity pathway identified in Drosophila.

FAT4 FAT2

1.57e-04796216059920
Pubmed

Wnt5a is required for cardiac outflow tract septation in mice.

FGF8 PLXNA2

1.57e-04796217515859
Pubmed

Expression analysis of an evolutionarily conserved metallophosphodiesterase gene, Mpped1, in the normal and beta-catenin-deficient malformed dorsal telencephalon.

MKI67 CUX1

1.57e-04796220503375
Pubmed

Tyrosine residues in phospholipase Cgamma 2 essential for the enzyme function in B-cell signaling.

SYK LCK

1.57e-04796211606584
Pubmed

PAK1 regulates cortical development via promoting neuronal migration and progenitor cell proliferation.

MKI67 CUX1

1.57e-04796226043730
Pubmed

Catalytically inactive Dnmt3b rescues mouse embryonic development by accessory and repressive functions.

FGF8 DNMT1

1.57e-04796231558711
Pubmed

S-nitrosylation of HDAC2 regulates the expression of the chromatin-remodeling factor Brm during radial neuron migration.

MKI67 CUX1

1.57e-04796223359715
Pubmed

SHC and SHIP phosphorylation and interaction in response to activation of the FLT3 receptor.

SYK LCK

1.57e-04796210482988
Pubmed

Identification of the major tyrosine kinase substrate in signaling complexes formed after engagement of Fc gamma receptors.

SYK LCK

1.57e-0479627721825
Pubmed

EphA4 Regulates the Balance between Self-Renewal and Differentiation of Radial Glial Cells and Intermediate Neuronal Precursors in Cooperation with FGF Signaling.

MKI67 CUX1

1.57e-04796225978062
Pubmed

Evidence of LAT as a dual substrate for Lck and Syk in T lymphocytes.

SYK LCK

1.57e-04796216938345
Pubmed

RECQ1 helicase is involved in replication stress survival and drug resistance in multiple myeloma.

A2M TCOF1 PHF3 PDIA3 GNL3

1.58e-0418396528186131
Pubmed

A Multipronged Unbiased Strategy Guides the Development of an Anti-EGFR/EPHA2-Bispecific Antibody for Combination Cancer Therapy.

CDC42EP4 DSG2 PI4KA APBB2 MACF1 MAP4K4 PDIA3

1.71e-0442196736976175
Pubmed

Identification of Human Neuronal Protein Complexes Reveals Biochemical Activities and Convergent Mechanisms of Action in Autism Spectrum Disorders.

MAGED1 TAF9B MKI67 CUX1

1.81e-0410196426949739
Pubmed

Systematic Analysis of Human Protein Phosphatase Interactions and Dynamics.

FLII ST13P4 SLMAP MKI67 HSP90AA5P PDIA3 YWHAH CUX1

1.92e-0457396828330616
Pubmed

NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency.

TCOF1 MKI67 BRD3 TOP1MT

1.96e-0410396432744500
Pubmed

Differential roles of ARID1B in excitatory and inhibitory neural progenitors in the developing cortex.

MKI67 CUX1

2.09e-04896233594090
Pubmed

Caudal regression in adrenocortical dysplasia (acd) mice is caused by telomere dysfunction with subsequent p53-dependent apoptosis.

MKI67 FGF8

2.09e-04896219660449
Pubmed

Disruption of NEUROD2 causes a neurodevelopmental syndrome with autistic features via cell-autonomous defects in forebrain glutamatergic neurons.

MKI67 CUX1

2.09e-04896234188164
Pubmed

Influence of mesodermal Fgf8 on the differentiation of neural crest-derived postganglionic neurons.

MKI67 FGF8

2.09e-04896222040872
Pubmed

Molecular cloning of a novel gene encoding a membrane-associated adaptor protein (LAX) in lymphocyte signaling.

SYK LCK

2.09e-04896212359715
Pubmed

Critical role of the BAF chromatin remodeling complex during murine neural crest development.

MKI67 PLXNA2

2.09e-04896233750945
Pubmed

Development of the mammalian urethra is controlled by Fgfr2-IIIb.

MKI67 FGF8

2.09e-04896215843416
Pubmed

Congenital heart defects in Fgfr2-IIIb and Fgf10 mutant mice.

FGF8 PLXNA2

2.09e-04896216687131
Pubmed

ASPM and CITK regulate spindle orientation by affecting the dynamics of astral microtubules.

SLMAP MKI67

2.09e-04896227562601
Cytoband3p21.1

CHDH GNL3 DNAH1

9.59e-05429633p21.1
CytobandEnsembl 112 genes in cytogenetic band chr3p21

CCDC71 ZNF35 CHDH GNL3 DNAH1

5.49e-04316965chr3p21
GeneFamilyGelsolin/villins

FLII SCIN

3.30e-048632950
GeneFamilyAT-rich interaction domain containing

KDM5C ARID5B

1.22e-0315632418
GeneFamilyCadherin related

FAT4 FAT2

1.57e-031763224
ToppCellCOPD-Lymphoid-B|Lymphoid / Disease state, Lineage and Cell class

SNED1 KLHL5 UPF2 FGD2 TCOF1 ARID5B SYK MAP4K4

7.75e-091909581e85ee686ff6dd27c69415d524d54fa825b1daad
ToppCellPND10-Immune-Immune_Lymphocytic_T/NK-Lymphocytic_B-B-B_prolif|PND10 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

FGD2 TCOF1 SYK RFC2 GNL3 DNMT1

2.68e-06183956956ff95aef9c5521b6a3ba7ac6df0aad242c1c35
ToppCellfacs-Thymus-nan-3m-Lymphocytic|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

PHF3 SMARCD2 LCK MAP4K4 CUX1 DNM2

3.76e-0619495666c056232ac216780acf4cc8ea325bd8ed1909c9
ToppCellsevere_COVID-19-CD4+_T_naive|severe_COVID-19 / disease group, cell group and cell class (v2)

CHMP7 FAM153A TSHZ2 ARID5B LCK GNL3

3.76e-061949564b86f3cc173ea779399d5b3598b45b25f60a4395
ToppCellfacs-Brain_Non-Myeloid-Hippocampus|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

KLHL5 TRIM2 CLCN3 MAP4K4 EVI5L DNM2

4.48e-06200956fc28f71ca1cd0fdae66009ae5afe175d22f2bd8c
ToppCellPosterior_cortex-Neuronal-Excitatory-eN2(Slc17a7_Slc17a6)-Tshz2|Posterior_cortex / BrainAtlas - Mouse McCarroll V32

DSG2 TSHZ2 SYK MCF2 YWHAH

6.18e-0612195505c40fd39e6b6275f35aaad835f95a81fcbb0990
ToppCelldroplet-Heart-nan-3m|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

TXLNB SLMAP MACF1 CMYA5 HDLBP

3.77e-05176955749b47eac5436fa34e0d243ffbc6f1897f4e431e
ToppCellPBMC_fresh-frozen-Mild-Moderate_progression_d02_child-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c02-AQP3|Mild-Moderate_progression_d02_child / Compartment, severity and other cell annotations on 10x 3' data (130k)

A2M FLII CHDH DNM2 HDLBP

4.20e-0518095581d60f0fa9e3b5bfcec85139a0a49e9130145f0e
ToppCellrenal_medulla_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Collecting_tubule_epithelial_cell-kidney_collecting_duct_principal_cell-Outer_Medullary_Collecting_Duct_Principal_Cell|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

FAM153A SYK ARL15 SCIN IQUB

4.54e-05183955b5ede5a0048c585b73c00e88aeddbcaf669347b1
ToppCellCOPD-Lymphoid-B|COPD / Disease state, Lineage and Cell class

SNED1 KLHL5 UPF2 ARID5B MAP4K4

4.78e-05185955925e79c35c381dd44ec5fb921dca09ce43140135
ToppCellCOVID-19-Heart-EC_2|Heart / Disease (COVID-19 only), tissue and cell type

A2M FAT4 APBB2 ARL15 PLXNA2

5.03e-0518795540ffc06a3e3251d9b12da390210d3e045af7537a
ToppCellsevere_COVID-19-CD4+_T_naive|World / disease group, cell group and cell class (v2)

CHMP7 FAM153A TSHZ2 ARID5B GNL3

5.56e-0519195555a282478488efd1561ea57a6f0218f55f711bb0
ToppCelldroplet-Thymus-nan-3m-Lymphocytic|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MKI67 SMARCD2 LCK YWHAH CUX1

5.70e-05192955041124dd5c24c1eb188d2560ba606422c0b215c5
ToppCelldroplet-Thymus-nan-3m|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MKI67 SMARCD2 LCK YWHAH CUX1

5.70e-05192955d9e61b2722aa81e4f6e11865a04f2f1e75b794ab
ToppCellCOVID-19-Fibroblasts-Other_FB|COVID-19 / group, cell type (main and fine annotations)

A2M SNED1 FAT4 TSHZ2 APBB2

5.84e-05193955e6b75be08e33c1de079fb5c02f0b4468128b369c
ToppCellfacs-Thymus-nan-3m|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SMARCD2 LCK MAP4K4 CUX1 DNM2

5.99e-05194955f1661f9f2439fca5c1012c693b0744c4e3b90a9b
ToppCellPCW_13-14-Mesenchymal-Mesenchymal_fibroblastic-mes_immature5_(6)|PCW_13-14 / Celltypes from embryonic and fetal-stage human lung

SNED1 FAT4 CLCN3 TSHZ2 MACF1

5.99e-05194955b1bb0f846d2865efdd9bc8842b16b9d069785882
ToppCellfacs-Thymus-nan|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SMARCD2 LCK MAP4K4 CUX1 DNM2

5.99e-05194955cda1b197efb199330ea7ab25a7cee22cae22589d
ToppCellPBMC-Mild-Lymphocyte-T/NK-CD4+_T-CD4+_T_naive-|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

CHMP7 FAM153A TSHZ2 ARID5B LCK

6.14e-05195955d9965223430aba1ec0b1b77b5bd40d3a01e42e95
ToppCellPBMC-Mild-Lymphocyte-T/NK-CD4+_T-CD4+_T_naive|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

CHMP7 FAM153A TSHZ2 ARID5B LCK

6.14e-051959551d3c51a3be5ad1fbc465c5f684565ec4c6f35f54
ToppCell3'-Parenchyma_lung-Mesenchymal-Fibroblastic-fibroblastic_type_2-Alveolar_fibroblasts-Alveolar_fibroblasts_L.2.1.1.1|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

A2M SERPINA3 FAT4 MACF1 MUSK

6.44e-0519795594a9603cbd3516fbcce871909693b88f20d41713
ToppCellrenal_cortex_nuclei-CKD+DKD_normotensive-Mesenchymal-Fibroblast-Collagen+matrisome-high_fibroblast-|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

A2M SNED1 FAT4 TSHZ2 APBB2

6.44e-0519795585a8f1d18e0dd1d31341f5131eecd217553bf042
ToppCellrenal_cortex_nuclei-CKD+DKD_normotensive-Mesenchymal-Fibroblast-Collagen+matrisome-high_fibroblast|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

A2M SNED1 FAT4 TSHZ2 APBB2

6.44e-05197955e8e3ba791dfaa0fab35e0329a5e34376f9ee6143
ToppCellCOVID_non-vent-Lymphocytic-T_cell-CD4+_Naive_T_cell|COVID_non-vent / Disease condition, Lineage, Cell class and subclass

CHMP7 FAM153A TSHZ2 ARID5B LCK

6.44e-05197955836dd8110d5689f944ad1d301def38c32278b5b5
ToppCellcellseq2-Epithelial|cellseq2 / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2

SERPINA3 TRIM2 DSG2 HDLBP CYB561

6.75e-051999552d4fb558845764f937efaf39962caaeb2c85478b
ToppCellcellseq2-Epithelial-Epithelial_Glandular|cellseq2 / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2

SERPINA3 TRIM2 DSG2 HDLBP CYB561

6.75e-05199955ca78fd6e310232b25b864ed02ff9242fe1aa8206
ToppCellE16.5-Mesenchymal-Mesenchymal_structural|E16.5 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

SNED1 MAGED1 CDC42EP4 TSHZ2 MACF1

6.75e-051999552cec0e370ee9bb3c88a7acb5519e9ea8ddb399bc
ToppCellmild-CD4+_Tcm|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class

TSHZ2 PHF3 ARID5B MACF1 LCK

6.75e-0519995506c8a0e39f7a33736548f04a5e2263334c8541cf
ToppCellNS-control-d_0-4-Epithelial-Secretory|d_0-4 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

FAT2 DSG2 TSHZ2 CMYA5 PDIA3

6.75e-0519995532bdfff40fd442b88489c8b0f79af3927a51a03c
ToppCell3'-Broncho-tracheal-Epithelial-Airway_epithelium-respiratory_basal_cell-Suprabasal-Suprabasal_L.0.0.2.2|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

FAT2 CDC42EP4 DSG2 TSHZ2 CMYA5

6.75e-05199955c88a28a73f54dc571f2ff1e4b55073f83cbead2c
ToppCellcontrol-Epithelial-Secretory|Epithelial / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

FAT2 DSG2 TSHZ2 CMYA5 PDIA3

6.75e-051999553d01f90ffd271ca00129192787e4921bdca7e01e
ToppCellE16.5-Mesenchymal-Mesenchymal_structural-Fibroblastic|E16.5 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

SNED1 MAGED1 CDC42EP4 TSHZ2 MACF1

6.75e-051999559e87b64e16d595701c3beb07aa835afe3330bd10
ToppCellcontrol-Epithelial-Secretory|control / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

FAT2 DSG2 TSHZ2 CMYA5 PDIA3

6.75e-05199955262e5b8a52c8ddb0b47048c786e8bdb7158e1b9a
ToppCellcontrol|World / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

FAT2 TRIM2 ARSD TSHZ2 AHNAK2

6.92e-0520095597f36d2c197e03d93a1fc59949d77ae90f6e6a9a
ToppCell10x_5'_v1-Non-neoplastic-Myeloid-TAM-MG-TAM-MG_aging_sig|10x_5'_v1 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group

A2M FGD2 SYK SCIN YWHAH

6.92e-05200955a1503bcc774bed9563eda7cf90b8b5bf4405ad85
ToppCellSepsis-Leuk-UTI-Lymphocyte-T/NK-CD4+_T_naive|Leuk-UTI / Disease, condition lineage and cell class

CHMP7 FAM153A GAMT TSHZ2 LCK

6.92e-05200955a542c302ac266ed0ead355b5011f0aff39320ed7
ToppCell(5)_Epithelial_cells-(5)_Epi_dividing|(5)_Epithelial_cells / Oesophagus cell shreds on cell class (v1) and cell subclass (v1)

TCOF1 MKI67 RFC2 YWHAH DNMT1

6.92e-05200955b46b2064362efc64edf19ab2b21bc89047c9d943
ToppCell10x_5'_v1-Non-neoplastic-Myeloid-TAM-MG-TAM-MG_aging_sig-Z|10x_5'_v1 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group

A2M FGD2 SYK SCIN YWHAH

6.92e-0520095525247f8b6ba6cd899ba6bd47e28e090d697e4632
ToppCellNS-control|NS / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

FAT2 TRIM2 ARSD TSHZ2 AHNAK2

6.92e-05200955ecbe89ff95d046155b984c8c150e0b9e7278f839
ToppCellCOVID-19-COVID-19_Mild-Lymphocyte-T/NK-CD4+_T_naive|COVID-19_Mild / Disease, condition lineage and cell class

CHMP7 FAM153A TSHZ2 ARID5B LCK

6.92e-05200955a51b61afc3fd2e548489901a86fb9d1c5bd3f95f
Diseasetotal blood protein measurement

SERPINA3 TXLNB ARID5B SYK MACF1 ARL15 MUSK DNAH1 HDLBP

1.05e-05449919EFO_0004536
DiseaseHeadache

ATG13 IFT81 MACF1 CUX1

4.67e-0564914HP_0002315
Diseaselevel of Phosphatidylcholine (16:0_22:4) in blood serum

MAP4K4 MUSK

3.34e-049912OBA_2045078
Diseaseadseverin measurement

CYP11B1 SCIN

4.17e-0410912EFO_0801358
Diseasecardiovascular disease

USP38 CHDH ARID5B KYAT3 ARL15 DNMT1 CYB561

5.40e-04457917EFO_0000319
Diseasecortical surface area measurement

CHMP7 TRIM2 USP38 ATG13 PRSS55 MACF1 MSH5 QSER1 ARL15 MAP4K4 PLXNA2 CUX1

8.67e-0413459112EFO_0010736
Diseasestomach cancer (is_marker_for)

KDM5C MKI67 MAP4K4 CUX1

9.93e-04142914DOID:10534 (is_marker_for)
DiseaseX-24309 measurement

FBF1 MIDEAS

1.72e-0320912EFO_0800872
Diseaselung adenocarcinoma (is_marker_for)

SERPINA3 MKI67 MAP4K4

2.33e-0385913DOID:3910 (is_marker_for)

Protein segments in the cluster

PeptideGeneStartEntry
LDMEKRNSSLPDENN

EVI5L

486

Q96CN4
NKPTDDIVLMAQALE

BRD3

116

Q15059
ANAFKPNILLIMADD

ARSD

36

P51689
QSMAEDLDSLPEKLA

ATG13

486

O75143
DKPVGMDILNSAIEN

APBB2

601

Q92870
ILQPCSLDDMDALKD

ARL15

171

Q9NXU5
DEPQMLTNEKLSIFD

DNMT1

376

P26358
AMKAVTELNEPLSNE

YWHAH

26

Q04917
NASALFILPDQDKME

SERPINA3

271

P01011
EMEAQQAALDPALKQ

CUX1

716

P39880
RMPKLSQVNESDADD

FAT4

4866

Q6V0I7
TAAENKENLDPSNLM

HCCS

71

P53701
RPSQAEEQALSMDFK

CYB561

226

P49447
DQSVLLMKPDAELSA

A2M

601

P01023
LNAPTIMIAEKAADI

CHDH

556

Q8NE62
LDPDTMQALEKSNDE

QSER1

1561

Q2KHR3
MQALEKSNDELLLPH

QSER1

1566

Q2KHR3
TLVMKINATDADEPN

DSG2

176

Q14126
LEDAQESKALVNMPG

EXO5

31

Q9H790
MANDSPAKSLVDIDL

MAP4K4

1

O95819
PDEAKLAEDILNTMF

FLII

1111

Q13045
LDIAQDPAQKDTMLG

IFT122

926

Q9HBG6
EMADIQVSAAAARPK

MAGED1

61

Q9Y5V3
PALKDELLAEANVMQ

SYK

411

P43405
MDNKISPEAQVAELE

CFAP52

1

Q8N1V2
DPTANDINAAITKEM

HSP90AA5P

301

Q58FG0
ADIAKLPAISDQDMN

PLXNA2

1816

O75051
VDIIDENDNAPMFLK

FAT2

1746

Q9NYQ8
LKEAAQLVPNDMESL

LRRC36

591

Q1X8D7
EARQMLSKEADASPA

NUP85

211

Q9BW27
AEETILNAFKMLDPD

MYL5

101

Q02045
PAKLNRQDAMLVDEL

EPX

526

P11678
MQVDPATLAKSDLED

FAM153A

201

Q9UHL3
KSLDAIVASVMEANP

PI4KA

346

P42356
SPDAFLAEANLMKQL

LCK

281

P06239
PDMEAFQQELALLKI

PAGE2B

66

Q5JRK9
PSQAEDVQAALVALM

GDPGP1

366

Q6ZNW5
AKRIEPAEELNSNDM

MKI67

3056

P46013
PAEELNSNDMKTNKE

MKI67

3061

P46013
ILAVTPANMDLANSD

DNM2

171

P50570
PANMDLANSDALKLA

DNM2

176

P50570
IAKLLASDDMNIPNE

KLHL5

366

Q96PQ7
QPMAERKAQLDALAF

MACF1

3536

Q9UPN3
LANKRINAMAEDGDP

FGF8

86

P55075
MNDPLSAIDAEQLEK

DNAH1

1041

Q9P2D7
ALEEALLVFNPMSQD

CCDC71

26

Q8IV32
ISEADPQALLQAMKD

FBF1

66

Q8TES7
QLKSMRQAAADAKPE

IFT81

246

Q8WYA0
MDPDKQDALNSIENS

DYTN

1

A2CJ06
SNMLGDNKVPAEEVL

CHMP7

136

Q8WUX9
PEDMLNAAAALDSAL

C14orf93

251

Q9H972
PTAALTLKAADEQMA

CMYA5

1186

Q8N3K9
AMSLPQLNEKEAAEK

CDC42EP4

116

Q9H3Q1
NAELSPDAIKANSME

CYP11B1

296

P15538
KALQDIENFLEMALP

MCF2

361

P10911
DMNPELRKALLQDSA

MIDEAS

316

Q6PJG2
MQRPNDDSLAFLDKI

IQUB

101

Q8NA54
MAIAASKVQEAPIDE

GAMT

71

Q14353
QAPDQADAQKALDMI

FGD2

266

Q7Z6J4
VKPMEAASAILSQAD

GNL3

331

Q9BVP2
PKLLDTVDDMLANDI

EHD1

376

Q9H4M9
DVSLLDPDLSDMKNN

KYAT3

376

Q6YP21
DLEREVAQMKQAALP

C19orf25

96

Q9UFG5
PDMEAFQQELALLKI

PAGE2

66

Q7Z2X7
PNCVNRDLIDKAAMD

UPF2

576

Q9HAU5
FMKLDLEDPNLDLNV

MSH5

806

O43196
MLVAAAAERNKDPIL

METTL26

1

Q96S19
LSFSPMAKNAENEDL

FNDC8

121

Q8TC99
NAPRDALVMAQILKD

TAF9B

11

Q9HBM6
EDASAMLKEVQPRAQ

ST13P4

211

Q8IZP2
REALAAMNAAQVKPL

TCOF1

486

Q13428
ANPQERKAAMKTAEE

SCIN

301

Q9Y6U3
DPNIVIAKMDATAND

PDIA3

426

P30101
KELQALSRQPAEMAA

PLEKHJ1

6

Q9NW61
LNFLEDNPSLKDIML

SIK2

526

Q9H0K1
ASAQLENMEEAPKRV

SNED1

1276

Q8TER0
ENMEEAPKRVSLALQ

SNED1

1281

Q8TER0
EVDDPLKAQMSNFLA

SMARCD2

411

Q92925
FNLDKVPCLASMIED

EIF4ENIF1

311

Q9NRA8
NVEAAMSLQLPEADA

AHNAK2

5241

Q8IVF2
ANQNETEDDKLPAMA

ARID5B

606

Q14865
NDMNASKIVDDIPDR

CLCN3

476

P51790
DMAVVLKATQEAPAA

ZNF35

71

P13682
QMDEQDLNEPLAKVS

SLMAP

466

Q14BN4
NLQLFMENKDPRDDL

TOP1MT

386

Q969P6
EAAMEIQEPAANKSL

PHF3

1071

Q92576
PALKDAMLELNASND

RFC2

96

P35250
MNEKTAAINADELPT

SPTA1

386

P02549
PSAVFEQDLENKEMS

USP38

896

Q8NB14
LDPLAVEKMQSLSEA

TSHZ2

421

Q9NRE2
ANMDNDIALLLLASP

PRSS55

151

Q6UWB4
APAKAQSALTEEMLE

TASOR2

626

Q5VWN6
QAPTEASLQKMEADV

TXLNB

616

Q8N3L3
NLDNVVEDSMLVDPK

HDLBP

796

Q00341
LDEDFTDQLSLMQLP

TCHHL1

676

Q5QJ38
QMSEKLNELADQDFP

TRIM2

276

Q9C040
LPVAMEAATNKDELI

USP13

501

Q92995
LVMERSEELNKDLNP

YRDC

151

Q86U90
MAACPEKLDLNLAAA

KDM5C

651

P41229
EAALMAEFDNPNIVK

MUSK

626

O15146