Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyBiologicalProcess	protein localization to lysosome	RRAGA GCC2 ATG14 LMBRD1 SORL1	7.80e-07	60	59	5	GO:0061462
GeneOntologyBiologicalProcess	protein localization to vacuole	RRAGA GCC2 ATG14 LMBRD1 SORL1	5.56e-06	89	59	5	GO:0072665
GeneOntologyBiologicalProcess	mitotic cell cycle checkpoint signaling	NOP53 MAD1L1 BRCC3 IK CDC20 ATF2	7.08e-06	163	59	6	GO:0007093
GeneOntologyBiologicalProcess	negative regulation of cell cycle process	SOX2 NOP53 MAD1L1 BAZ1B BRCC3 IK CDC20 ATF2	8.47e-06	362	59	8	GO:0010948
GeneOntologyBiologicalProcess	cell cycle phase transition	DPF1 SOX2 NFIA NOP53 NFIX MAD1L1 BRCC3 IK CDC20 ATF2	1.03e-05	627	59	10	GO:0044770
GeneOntologyBiologicalProcess	cellular response to amino acid starvation	RRAGA ATF3 RRAGB ATF2	1.98e-05	56	59	4	GO:0034198
GeneOntologyBiologicalProcess	glial cell fate commitment	SOX2 NFIA NFIX	2.09e-05	19	59	3	GO:0021781
GeneOntologyBiologicalProcess	mitotic cell cycle process	DPF1 NFIA NOP53 NFIX MAD1L1 BAZ1B BRCC3 IK CDC20 NUDC ATF2	2.61e-05	854	59	11	GO:1903047
GeneOntologyBiologicalProcess	response to amino acid starvation	RRAGA ATF3 RRAGB ATF2	2.79e-05	61	59	4	GO:1990928
GeneOntologyBiologicalProcess	negative regulation of cell cycle phase transition	SOX2 NOP53 MAD1L1 BRCC3 IK CDC20 ATF2	2.89e-05	311	59	7	GO:1901988
GeneOntologyBiologicalProcess	mitotic nuclear division	NFIA NFIX MAD1L1 BAZ1B IK CDC20 NUDC	3.20e-05	316	59	7	GO:0140014
GeneOntologyBiologicalProcess	cell cycle checkpoint signaling	NOP53 MAD1L1 BRCC3 IK CDC20 ATF2	3.58e-05	217	59	6	GO:0000075
GeneOntologyBiologicalProcess	negative regulation of cell cycle	SOX2 NOP53 MAD1L1 BAZ1B BRCC3 IK CDC20 ATF2	5.01e-05	464	59	8	GO:0045786
GeneOntologyBiologicalProcess	head development	FANCC SOX1 SOX2 SEMA6B NFIX ARX COQ8B CASP5 ATF2 AXIN1 SEMA4C	5.09e-05	919	59	11	GO:0060322
GeneOntologyBiologicalProcess	cell cycle phase	NFIA NFIX CDC20	6.19e-05	27	59	3	GO:0022403
GeneOntologyBiologicalProcess	RIG-I signaling pathway	CLPB NOP53 SEC14L1	8.54e-05	30	59	3	GO:0039529
GeneOntologyBiologicalProcess	sister chromatid segregation	DPF1 MAD1L1 BAZ1B IK CDC20 NUDC	8.58e-05	254	59	6	GO:0000819
GeneOntologyBiologicalProcess	mitotic cell cycle phase transition	DPF1 NFIA NOP53 NFIX MAD1L1 BRCC3 IK CDC20	9.56e-05	509	59	8	GO:0044772
GeneOntologyBiologicalProcess	regulation of cell cycle phase transition	DPF1 SOX2 NOP53 MAD1L1 BRCC3 IK CDC20 ATF2	1.05e-04	516	59	8	GO:1901987
GeneOntologyBiologicalProcess	protein targeting to lysosome	GCC2 ATG14 SORL1	1.14e-04	33	59	3	GO:0006622
GeneOntologyBiologicalProcess	mitotic cell cycle	DPF1 NFIA NOP53 NFIX MAD1L1 BAZ1B BRCC3 IK CDC20 NUDC ATF2	1.23e-04	1014	59	11	GO:0000278
GeneOntologyBiologicalProcess	neuron fate commitment	SOX1 SOX2 NFIA NFIX	1.34e-04	91	59	4	GO:0048663
GeneOntologyBiologicalProcess	brain development	FANCC SOX1 SOX2 SEMA6B NFIX ARX COQ8B CASP5 ATF2 SEMA4C	1.47e-04	859	59	10	GO:0007420
GeneOntologyBiologicalProcess	negative regulation of mitotic cell cycle	NOP53 MAD1L1 BRCC3 IK CDC20 ATF2	1.52e-04	282	59	6	GO:0045930
GeneOntologyBiologicalProcess	regulation of mitotic metaphase/anaphase transition	DPF1 MAD1L1 IK CDC20	1.58e-04	95	59	4	GO:0030071
GeneOntologyBiologicalProcess	cell cycle process	DPF1 SOX2 NFIA NOP53 NFIX CECR2 MAD1L1 BAZ1B BRCC3 IK CDC20 NUDC ATF2	1.75e-04	1441	59	13	GO:0022402
GeneOntologyBiologicalProcess	regulation of metaphase/anaphase transition of cell cycle	DPF1 MAD1L1 IK CDC20	1.78e-04	98	59	4	GO:1902099
GeneOntologyBiologicalProcess	cellular response to starvation	RRAGA ATG14 ATF3 RRAGB ATF2	1.86e-04	185	59	5	GO:0009267
GeneOntologyBiologicalProcess	metaphase/anaphase transition of mitotic cell cycle	DPF1 MAD1L1 IK CDC20	1.93e-04	100	59	4	GO:0007091
GeneOntologyBiologicalProcess	cytoplasmic pattern recognition receptor signaling pathway	CLPB NOP53 CASP5 BRCC3 SEC14L1	2.00e-04	188	59	5	GO:0002753
GeneOntologyBiologicalProcess	metaphase/anaphase transition of cell cycle	DPF1 MAD1L1 IK CDC20	2.16e-04	103	59	4	GO:0044784
GeneOntologyBiologicalProcess	cell quiescence	NFIA NFIX	2.23e-04	8	59	2	GO:0044838
GeneOntologyBiologicalProcess	neuron fate specification	SOX1 NFIA NFIX	2.36e-04	42	59	3	GO:0048665
GeneOntologyBiologicalProcess	negative regulation of chromosome organization	MAD1L1 BAZ1B IK CDC20	2.50e-04	107	59	4	GO:2001251
GeneOntologyBiologicalProcess	glial cell fate specification	NFIA NFIX	2.86e-04	9	59	2	GO:0021780
GeneOntologyBiologicalProcess	regulation of sister chromatid segregation	DPF1 MAD1L1 IK CDC20	2.88e-04	111	59	4	GO:0033045
GeneOntologyBiologicalProcess	mitotic sister chromatid segregation	MAD1L1 BAZ1B IK CDC20 NUDC	3.49e-04	212	59	5	GO:0000070
GeneOntologyBiologicalProcess	protein targeting to vacuole	GCC2 ATG14 SORL1	3.73e-04	49	59	3	GO:0006623
GeneOntologyBiologicalProcess	brain morphogenesis	FANCC SOX2 NFIX	3.73e-04	49	59	3	GO:0048854
GeneOntologyBiologicalProcess	negative regulation of mitotic cell cycle phase transition	NOP53 MAD1L1 BRCC3 IK CDC20	4.05e-04	219	59	5	GO:1901991
GeneOntologyBiologicalProcess	mitotic spindle assembly checkpoint signaling	MAD1L1 IK CDC20	4.20e-04	51	59	3	GO:0007094
GeneOntologyBiologicalProcess	spindle assembly checkpoint signaling	MAD1L1 IK CDC20	4.20e-04	51	59	3	GO:0071173
GeneOntologyBiologicalProcess	cell fate specification	SOX1 SOX2 NFIA NFIX	4.25e-04	123	59	4	GO:0001708
GeneOntologyBiologicalProcess	regulation of cell cycle checkpoint	MAD1L1 BRCC3 ATF2	4.45e-04	52	59	3	GO:1901976
GeneOntologyBiologicalProcess	negative regulation of mitotic metaphase/anaphase transition	MAD1L1 IK CDC20	4.70e-04	53	59	3	GO:0045841
GeneOntologyBiologicalProcess	negative regulation of mitotic sister chromatid segregation	MAD1L1 IK CDC20	4.70e-04	53	59	3	GO:0033048
GeneOntologyBiologicalProcess	negative regulation of sister chromatid segregation	MAD1L1 IK CDC20	4.70e-04	53	59	3	GO:0033046
GeneOntologyBiologicalProcess	negative regulation of mitotic sister chromatid separation	MAD1L1 IK CDC20	4.70e-04	53	59	3	GO:2000816
GeneOntologyBiologicalProcess	biological phase	NFIA NFIX CDC20	4.70e-04	53	59	3	GO:0044848
GeneOntologyBiologicalProcess	mitotic spindle checkpoint signaling	MAD1L1 IK CDC20	4.70e-04	53	59	3	GO:0071174
GeneOntologyBiologicalProcess	response to starvation	RRAGA ATG14 ATF3 RRAGB ATF2	4.96e-04	229	59	5	GO:0042594
GeneOntologyBiologicalProcess	regulation of cytoplasmic pattern recognition receptor signaling pathway	NOP53 CASP5 BRCC3 SEC14L1	5.09e-04	129	59	4	GO:0039531
GeneOntologyBiologicalProcess	negative regulation of DNA-templated transcription	SOX1 SOX2 NOP53 NFIX ARX ATF3 ZNF318 BATF3 SPEN ATF2 AXIN1 DNMT1	5.13e-04	1399	59	12	GO:0045892
GeneOntologyBiologicalProcess	cellular response to leucine starvation	RRAGB ATF2	5.21e-04	12	59	2	GO:1990253
GeneOntologyBiologicalProcess	negative regulation of metaphase/anaphase transition of cell cycle	MAD1L1 IK CDC20	5.25e-04	55	59	3	GO:1902100
GeneOntologyBiologicalProcess	negative regulation of chromosome separation	MAD1L1 IK CDC20	5.25e-04	55	59	3	GO:1905819
GeneOntologyBiologicalProcess	nuclear chromosome segregation	DPF1 MAD1L1 BAZ1B IK CDC20 NUDC	5.28e-04	356	59	6	GO:0098813
GeneOntologyBiologicalProcess	negative regulation of RNA biosynthetic process	SOX1 SOX2 NOP53 NFIX ARX ATF3 ZNF318 BATF3 SPEN ATF2 AXIN1 DNMT1	5.61e-04	1413	59	12	GO:1902679
GeneOntologyBiologicalProcess	spindle checkpoint signaling	MAD1L1 IK CDC20	5.83e-04	57	59	3	GO:0031577
GeneOntologyBiologicalProcess	negative regulation of chromosome segregation	MAD1L1 IK CDC20	5.83e-04	57	59	3	GO:0051985
GeneOntologyBiologicalProcess	regulation of cell cycle process	DPF1 SOX2 NOP53 MAD1L1 BAZ1B BRCC3 IK CDC20 ATF2	6.22e-04	845	59	9	GO:0010564
GeneOntologyBiologicalProcess	nuclear division	NFIA NFIX MAD1L1 BAZ1B IK CDC20 NUDC	6.23e-04	512	59	7	GO:0000280
GeneOntologyBiologicalProcess	regulation of chromosome segregation	DPF1 MAD1L1 IK CDC20	6.74e-04	139	59	4	GO:0051983
GeneOntologyBiologicalProcess	regulation of mitotic sister chromatid segregation	MAD1L1 IK CDC20	6.78e-04	60	59	3	GO:0033047
GeneOntologyBiologicalProcess	negative regulation of transcription by RNA polymerase II	SOX1 SOX2 NOP53 NFIX ARX ATF3 BATF3 SPEN ATF2 DNMT1	7.39e-04	1053	59	10	GO:0000122
GeneOntologyBiologicalProcess	negative regulation of mitotic nuclear division	MAD1L1 IK CDC20	8.18e-04	64	59	3	GO:0045839
GeneOntologyBiologicalProcess	regulation of mitotic sister chromatid separation	MAD1L1 IK CDC20	8.18e-04	64	59	3	GO:0010965
GeneOntologyBiologicalProcess	forebrain generation of neurons	SOX1 SOX2 NFIX	8.56e-04	65	59	3	GO:0021872
GeneOntologyBiologicalProcess	establishment of protein localization to vacuole	GCC2 ATG14 SORL1	8.95e-04	66	59	3	GO:0072666
GeneOntologyBiologicalProcess	cellular response to nutrient levels	RRAGA ATG14 ATF3 RRAGB ATF2	9.11e-04	262	59	5	GO:0031669
GeneOntologyBiologicalProcess	mitotic sister chromatid separation	MAD1L1 IK CDC20	9.35e-04	67	59	3	GO:0051306
GeneOntologyBiologicalProcess	positive regulation of mitotic metaphase/anaphase transition	MAD1L1 CDC20	9.41e-04	16	59	2	GO:0045842
GeneOntologyBiologicalProcess	chromatin organization	SOX1 DPF1 SOX2 CECR2 BAZ1B BRCC3 ATF2 AXIN1 DNMT1	9.43e-04	896	59	9	GO:0006325
GeneOntologyBiologicalProcess	metencephalon development	NFIX COQ8B ATF2 SEMA4C	9.65e-04	153	59	4	GO:0022037
GeneOntologyBiologicalProcess	regulation of chromosome organization	DPF1 MAD1L1 BAZ1B IK CDC20	9.75e-04	266	59	5	GO:0033044
GeneOntologyBiologicalProcess	regulation of mitotic cell cycle phase transition	DPF1 NOP53 MAD1L1 BRCC3 IK CDC20	9.95e-04	402	59	6	GO:1901990
GeneOntologyBiologicalProcess	positive regulation of metaphase/anaphase transition of cell cycle	MAD1L1 CDC20	1.06e-03	17	59	2	GO:1902101
GeneOntologyBiologicalProcess	interneuron migration	SOX1 ARX	1.06e-03	17	59	2	GO:1904936
GeneOntologyBiologicalProcess	response to nutrient levels	SOX2 RRAGA ATG14 ATF3 RRAGB ATF2 SORL1	1.12e-03	566	59	7	GO:0031667
GeneOntologyBiologicalProcess	neural nucleus development	ARX CASP5 ATF2	1.15e-03	72	59	3	GO:0048857
GeneOntologyBiologicalProcess	cellular response to amino acid stimulus	RRAGA RRAGB GRIN3B DNMT1	1.17e-03	161	59	4	GO:0071230
GeneOntologyBiologicalProcess	organelle fission	NFIA NFIX MAD1L1 BAZ1B IK CDC20 NUDC	1.18e-03	571	59	7	GO:0048285
GeneOntologyBiologicalProcess	negative regulation of nuclear division	MAD1L1 IK CDC20	1.20e-03	73	59	3	GO:0051784
GeneOntologyBiologicalProcess	regulation of mitotic cell cycle	DPF1 NOP53 MAD1L1 BRCC3 IK CDC20 ATF2	1.48e-03	594	59	7	GO:0007346
GeneOntologyBiologicalProcess	positive regulation of mitotic sister chromatid separation	MAD1L1 CDC20	1.48e-03	20	59	2	GO:1901970
GeneOntologyBiologicalProcess	regulation of chromosome separation	MAD1L1 IK CDC20	1.51e-03	79	59	3	GO:1905818
GeneOntologyBiologicalProcess	pattern recognition receptor signaling pathway	CLPB NOP53 CASP5 BRCC3 SEC14L1	1.52e-03	294	59	5	GO:0002221
GeneOntologyBiologicalProcess	regulation of RIG-I signaling pathway	NOP53 SEC14L1	1.63e-03	21	59	2	GO:0039535
GeneOntologyBiologicalProcess	cellular response to acid chemical	RRAGA RRAGB GRIN3B DNMT1	1.65e-03	177	59	4	GO:0071229
GeneOntologyBiologicalProcess	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	NOP53 CDC20 AXIN1	1.86e-03	85	59	3	GO:0032436
GeneOntologyBiologicalProcess	central nervous system development	FANCC SOX1 SOX2 SEMA6B NFIX ARX COQ8B CASP5 ATF2 SEMA4C	1.95e-03	1197	59	10	GO:0007417
GeneOntologyBiologicalProcess	positive regulation of NLRP3 inflammasome complex assembly	CASP5 BRCC3	1.96e-03	23	59	2	GO:1900227
GeneOntologyBiologicalProcess	innate immune response-activating signaling pathway	CLPB NOP53 CASP5 BRCC3 SEC14L1	1.97e-03	312	59	5	GO:0002758
GeneOntologyBiologicalProcess	protein-DNA complex organization	SOX1 DPF1 SOX2 CECR2 BAZ1B BRCC3 ATF2 AXIN1 DNMT1	2.01e-03	999	59	9	GO:0071824
GeneOntologyBiologicalProcess	chromosome separation	MAD1L1 IK CDC20	2.05e-03	88	59	3	GO:0051304
GeneOntologyBiologicalProcess	chromosome segregation	DPF1 MAD1L1 BAZ1B IK CDC20 NUDC	2.09e-03	465	59	6	GO:0007059
GeneOntologyBiologicalProcess	mitotic DNA damage checkpoint signaling	NOP53 BRCC3 ATF2	2.26e-03	91	59	3	GO:0044773
GeneOntologyBiologicalProcess	regulation of pattern recognition receptor signaling pathway	NOP53 CASP5 BRCC3 SEC14L1	2.26e-03	193	59	4	GO:0062207
GeneOntologyBiologicalProcess	positive regulation of inflammasome-mediated signaling pathway	CASP5 BRCC3	2.50e-03	26	59	2	GO:0141087
GeneOntologyBiologicalProcess	neuronal stem cell population maintenance	FANCC SOX2	2.50e-03	26	59	2	GO:0097150
GeneOntologyCellularComponent	nuclear protein-containing complex	FANCC DPF1 SART1 LUC7L2 CECR2 MAD1L1 BAZ1B BRCC3 ATF3 BATF3 IK CDC20 ATF2 CXXC1	2.18e-05	1377	59	14	GO:0140513
GeneOntologyCellularComponent	Gtr1-Gtr2 GTPase complex	RRAGA RRAGB	4.68e-05	4	59	2	GO:1990131
GeneOntologyCellularComponent	chromatin	FANCC SOX1 DPF1 SOX2 NFIA NOP53 NFIX CECR2 ARX BAZ1B ATF3 BATF3 ATF2 DNMT1	4.84e-05	1480	59	14	GO:0000785
GeneOntologyCellularComponent	spindle pole	FRY MAD1L1 BRCC3 IK CDC20	2.81e-04	205	59	5	GO:0000922
GeneOntologyCellularComponent	ISWI-type complex	CECR2 BAZ1B	6.97e-04	14	59	2	GO:0031010
HumanPheno	Patent ductus arteriosus	FANCC SOX2 STXBP1 NFIX ARX BAZ1B SPEN LMBRD1 AXIN1	2.17e-05	382	23	9	HP:0001643
Domain	NfI_DNAbd_pre-N	NFIA NFIX	5.66e-05	4	58	2	PF10524
Domain	CTF_NFI	NFIA NFIX	5.66e-05	4	58	2	PF00859
Domain	CTF_NFI_1	NFIA NFIX	5.66e-05	4	58	2	PS00349
Domain	CTF/NFI	NFIA NFIX	5.66e-05	4	58	2	IPR000647
Domain	CTF_NFI_2	NFIA NFIX	5.66e-05	4	58	2	PS51080
Domain	Gtr1_RagA	RRAGA RRAGB	5.66e-05	4	58	2	PF04670
Domain	CTF/NFI_DNA-bd_N	NFIA NFIX	5.66e-05	4	58	2	IPR019548
Domain	CTF/NFI_DNA-bd_CS	NFIA NFIX	5.66e-05	4	58	2	IPR019739
Domain	CTF/NFI_DNA-bd-dom	NFIA NFIX	5.66e-05	4	58	2	IPR020604
Domain	Gtr1_RagA	RRAGA RRAGB	5.66e-05	4	58	2	IPR006762
Domain	SOXp	SOX1 SOX2	9.42e-05	5	58	2	PF12336
Domain	SOX_fam	SOX1 SOX2	9.42e-05	5	58	2	IPR022097
Domain	bZIP_1	ATF3 BATF3 ATF2	1.59e-04	34	58	3	PF00170
Domain	AP-1	ATF3 BATF3	3.36e-04	9	58	2	IPR000837
Domain	Znf_CXXC	CXXC1 DNMT1	5.12e-04	11	58	2	IPR002857
Domain	ZF_CXXC	CXXC1 DNMT1	5.12e-04	11	58	2	PS51058
Domain	zf-CXXC	CXXC1 DNMT1	5.12e-04	11	58	2	PF02008
Domain	BRLZ	ATF3 BATF3 ATF2	5.64e-04	52	58	3	SM00338
Domain	BZIP	ATF3 BATF3 ATF2	5.96e-04	53	58	3	PS50217
Domain	BZIP_BASIC	ATF3 BATF3 ATF2	5.96e-04	53	58	3	PS00036
Domain	MAD_homology1_Dwarfin-type	NFIA NFIX	6.13e-04	12	58	2	IPR003619
Domain	DWA	NFIA NFIX	6.13e-04	12	58	2	SM00523
Domain	MH1	NFIA NFIX	6.13e-04	12	58	2	PF03165
Domain	bZIP	ATF3 BATF3 ATF2	6.30e-04	54	58	3	IPR004827
Domain	Znf_FYVE_PHD	DPF1 PCLO BAZ1B CXXC1	1.12e-03	147	58	4	IPR011011
Domain	PHD	DPF1 BAZ1B CXXC1	1.64e-03	75	58	3	PF00628
Domain	Semaphorin	SEMA6B SEMA4C	1.74e-03	20	58	2	IPR027231
Domain	Znf_PHD-finger	DPF1 BAZ1B CXXC1	1.90e-03	79	58	3	IPR019787
Domain	-	ODF1 NUDC	2.30e-03	23	58	2	2.60.40.790
Domain	PHD	DPF1 BAZ1B CXXC1	2.67e-03	89	58	3	SM00249
Domain	Znf_PHD	DPF1 BAZ1B CXXC1	2.84e-03	91	58	3	IPR001965
Domain	Bromodomain_CS	CECR2 BAZ1B	2.94e-03	26	58	2	IPR018359
Domain	HSP20-like_chaperone	ODF1 NUDC	2.94e-03	26	58	2	IPR008978
Domain	ZF_PHD_2	DPF1 BAZ1B CXXC1	3.21e-03	95	58	3	PS50016
Domain	ZF_PHD_1	DPF1 BAZ1B CXXC1	3.31e-03	96	58	3	PS01359
Domain	Sema	SEMA6B SEMA4C	4.16e-03	31	58	2	SM00630
Domain	Semap_dom	SEMA6B SEMA4C	4.16e-03	31	58	2	IPR001627
Domain	Sema	SEMA6B SEMA4C	4.16e-03	31	58	2	PF01403
Domain	SEMA	SEMA6B SEMA4C	4.16e-03	31	58	2	PS51004
Domain	PSI	SEMA6B SEMA4C	4.43e-03	32	58	2	PF01437
Domain	Plexin_repeat	SEMA6B SEMA4C	4.43e-03	32	58	2	IPR002165
Domain	BROMODOMAIN_1	CECR2 BAZ1B	5.89e-03	37	58	2	PS00633
Domain	TF_DNA-bd	ATF3 ATF2	5.89e-03	37	58	2	IPR008917
Pathway	REACTOME_CELLULAR_RESPONSE_TO_STARVATION	RPL27 RRAGA RPS9 ATF3 RRAGB ATF2	1.63e-05	157	49	6	M41835
Pubmed	H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.	SART1 RPL27 NFIA LUC7L2 NFIX BAZ1B BRCC3 ATF3 ZNF318 IK SPEN ATF2 CXXC1 DNMT1	2.52e-08	1294	59	14	30804502
Pubmed	Coordination of progenitor specification and growth in mouse and chick spinal cord.	SOX1 SOX2 ARX	5.52e-07	10	59	3	25258086
Pubmed	Gain of Additional BIRC3 Protein Functions through 3'-UTR-Mediated Protein Complex Formation.	SART1 RPL27 CLPB NOP53 LUC7L2 PCLO RPS9 BAZ1B CLINT1 IK SPEN NUDC DNMT1	6.05e-07	1425	59	13	30948266
Pubmed	Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst.	SOX1 SOX2 SART1 BAZ1B ATF3 ZNF318 ABLIM2 ATF2 CXXC1 DNMT1	9.74e-07	808	59	10	20412781
Pubmed	Transcriptional regulation of Nfix by NFIB drives astrocytic maturation within the developing spinal cord.	SOX2 NFIA NFIX	1.31e-06	13	59	3	29106906
Pubmed	Two-Dimensional Fractionation Method for Proteome-Wide Cross-Linking Mass Spectrometry Analysis.	SART1 RPL27 CLPB LUC7L2 RPS9 BRCC3 NUDC HSP90AA5P AXIN1 DNMT1	1.49e-06	847	59	10	35235311
Pubmed	MYC Protein Interactome Profiling Reveals Functionally Distinct Regions that Cooperate to Drive Tumorigenesis.	SART1 NOP53 ATF3 ZNF318 IK SPEN DNMT1	1.74e-06	339	59	7	30415952
Pubmed	Activating transcription factor 2 (ATF2) controls tolfenamic acid-induced ATF3 expression via MAP kinase pathways.	ATF3 ATF2	2.83e-06	2	59	2	20581861
Pubmed	RED, a spindle pole-associated protein, is required for kinetochore localization of MAD1, mitotic progression, and activation of the spindle assembly checkpoint.	MAD1L1 IK	2.83e-06	2	59	2	22351768
Pubmed	SOX 1, contrary to SOX 2, suppresses proliferation, migration, and invasion in human laryngeal squamous cell carcinoma by inhibiting the Wnt/β-catenin pathway.	SOX1 SOX2	2.83e-06	2	59	2	26040764
Pubmed	Expression of activating transcription factor 2 in inflammatory macrophages in obese adipose tissue.	ATF3 ATF2	2.83e-06	2	59	2	23712976
Pubmed	RagA is a functional homologue of S. cerevisiae Gtr1p involved in the Ran/Gsp1-GTPase pathway.	RRAGA RRAGB	2.83e-06	2	59	2	9394008
Pubmed	Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases.	RRAGA RRAGB	2.83e-06	2	59	2	7499430
Pubmed	CRISPR/Cas9 genome-wide screening identifies LUC7L2 that promotes radioresistance via autophagy in nasopharyngeal carcinoma cells.	RPL27 LUC7L2 RPS9	3.72e-06	18	59	3	34907164
Pubmed	Protein interactome reveals converging molecular pathways among autism disorders.	ZNF821 LUC7L2 MAD1L1 ARX IK CXXC1 AXIN1 DNMT1	4.63e-06	560	59	8	21653829
Pubmed	Defining the proximal interaction networks of Arf GTPases reveals a mechanism for the regulation of PLD1 and PI4KB.	SART1 NOP53 GCC2 ABCC5 ZNF318 CLINT1 SPEN DNMT1 SEMA4C	6.13e-06	777	59	9	35844135
Pubmed	Proximity-dependent Mapping of the Androgen Receptor Identifies Kruppel-like Factor 4 as a Functional Partner.	DPF1 SART1 NFIA NFIX IK ATF2	6.33e-06	268	59	6	33640491
Pubmed	Nucleolar proteome dynamics.	RPL27 STXBP1 NOP53 LUC7L2 RPS9 BAZ1B DNMT1	6.97e-06	419	59	7	15635413
Pubmed	AI-guided pipeline for protein-protein interaction drug discovery identifies a SARS-CoV-2 inhibitor.	RRAGA MAD1L1 BRCC3 ATF3	7.05e-06	72	59	4	37398436
Pubmed	Targeting USP10 induces degradation of oncogenic ANLN in esophageal squamous cell carcinoma.	SART1 RPL27 NOP53 RPS9 BAZ1B CLINT1 IK CDC20 SPEN NUDC DNMT1	7.49e-06	1257	59	11	36526897
Pubmed	Comprehensive identification of human bZIP interactions with coiled-coil arrays.	ATF3 BATF3 ATF2	8.02e-06	23	59	3	12805554
Pubmed	Distinct SoxB1 networks are required for naïve and primed pluripotency.	SOX1 SOX2	8.48e-06	3	59	2	29256862
Pubmed	Involvement of Sox1, 2 and 3 in the early and subsequent molecular events of lens induction.	SOX1 SOX2	8.48e-06	3	59	2	9609835
Pubmed	Phosphorylation of the spindle checkpoint protein Mad2 regulates its conformational transition.	MAD1L1 CDC20	8.48e-06	3	59	2	21041666
Pubmed	Metabolism. Differential regulation of mTORC1 by leucine and glutamine.	RRAGA RRAGB	8.48e-06	3	59	2	25567907
Pubmed	Insights into mad2 regulation in the spindle checkpoint revealed by the crystal structure of the symmetric mad2 dimer.	MAD1L1 CDC20	8.48e-06	3	59	2	18318601
Pubmed	Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.	NFIA NFIX	8.48e-06	3	59	2	31128945
Pubmed	Converting Adult Pancreatic Islet α Cells into β Cells by Targeting Both Dnmt1 and Arx.	ARX DNMT1	8.48e-06	3	59	2	28215845
Pubmed	The Mad1/Mad2 complex as a template for Mad2 activation in the spindle assembly checkpoint.	MAD1L1 CDC20	8.48e-06	3	59	2	15694304
Pubmed	Expression of Sox1, Sox2 and Sox9 is maintained in adult human cerebellar cortex.	SOX1 SOX2	8.48e-06	3	59	2	19061938
Pubmed	Stage-Specific Transcription Factors Drive Astrogliogenesis by Remodeling Gene Regulatory Landscapes.	NFIA ATF3	8.48e-06	3	59	2	30290178
Pubmed	RagA, but not RagB, is essential for embryonic development and adult mice.	RRAGA RRAGB	8.48e-06	3	59	2	24768164
Pubmed	Sox2-Deficient Müller Glia Disrupt the Structural and Functional Maturation of the Mammalian Retina.	SOX1 SOX2	8.48e-06	3	59	2	27031842
Pubmed	Nutrient mTORC1 signaling underpins regulatory T cell control of immune tolerance.	RRAGA RRAGB	8.48e-06	3	59	2	31649036
Pubmed	Rag GTPases are cardioprotective by regulating lysosomal function.	RRAGA RRAGB	8.48e-06	3	59	2	24980141
Pubmed	Mapping the Ku Interactome Using Proximity-Dependent Biotin Identification in Human Cells.	SART1 BAZ1B ZNF318 IK SPEN DNMT1	8.64e-06	283	59	6	30585729
Pubmed	Identification of proximal SUMO-dependent interactors using SUMO-ID.	SART1 BAZ1B BRCC3 ZNF318 CLINT1 IK NUDC	1.01e-05	444	59	7	34795231
Pubmed	The E3 ligase Mind bomb-1 (Mib1) modulates Delta-Notch signaling to control neurogenesis and gliogenesis in the developing spinal cord.	SOX1 SOX2 NFIA	1.04e-05	25	59	3	23223237
Pubmed	LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells.	SART1 RPL27 FRY PCLO RPS9 CLINT1 CDC20 SORL1	1.21e-05	639	59	8	23443559
Pubmed	MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons.	DPF1 SART1 RPL27 LUC7L2 CECR2 MRPL55 RPS9 IK SPEN CXXC1	1.28e-05	1082	59	10	38697112
Pubmed	Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes.	SART1 NFIA NFIX MAD1L1 ATF3 BATF3 SPEN ATF2 SORL1	1.34e-05	857	59	9	25609649
Pubmed	Expression of the transcriptional repressor ATF3 in gonadotrophs is regulated by Egr-1, CREB, and ATF2 after gonadotropin-releasing hormone receptor stimulation.	ATF3 ATF2	1.69e-05	4	59	2	18719024
Pubmed	Differential neuronal and glial expression of nuclear factor I proteins in the cerebral cortex of adult mice.	NFIA NFIX	1.69e-05	4	59	2	28295292
Pubmed	ATF5 increases cisplatin-induced apoptosis through up-regulation of cyclin D3 transcription in HeLa cells.	ATF3 ATF2	1.69e-05	4	59	2	16300731
Pubmed	Gene regulatory networks controlling vertebrate retinal regeneration.	NFIA NFIX	1.69e-05	4	59	2	33004674
Pubmed	Comparative expression of the mouse Sox1, Sox2 and Sox3 genes from pre-gastrulation to early somite stages.	SOX1 SOX2	1.69e-05	4	59	2	10446282
Pubmed	NFIA and GATA3 are crucial regulators of embryonic articular cartilage differentiation.	NFIA NFIX	1.69e-05	4	59	2	29247144
Pubmed	Nuclear factor one transcription factors as epigenetic regulators in cancer.	NFIA NFIX	1.69e-05	4	59	2	28076901
Pubmed	Distal Sox binding elements of the alphaB-crystallin gene show lens enhancer activity in transgenic mouse embryos.	SOX1 SOX2	1.69e-05	4	59	2	15113840
Pubmed	YAP plays a crucial role in the development of cardiomyopathy in lysosomal storage diseases.	RRAGA RRAGB	1.69e-05	4	59	2	33373332
Pubmed	Induction of ATF3 by ionizing radiation is mediated via a signaling pathway that includes ATM, Nibrin1, stress-induced MAPkinases and ATF-2.	ATF3 ATF2	1.69e-05	4	59	2	12833146
Pubmed	Transcription factor NF 1 expression in involuting mammary gland.	NFIA NFIX	1.69e-05	4	59	2	10959417
Pubmed	Chromosomal localization of the four genes (NFIA, B, C, and X) for the human transcription factor nuclear factor I by FISH.	NFIA NFIX	1.69e-05	4	59	2	7590749
Pubmed	Mad2 binding to Mad1 and Cdc20, rather than oligomerization, is required for the spindle checkpoint.	MAD1L1 CDC20	1.69e-05	4	59	2	11707408
Pubmed	Altered expression of the developmentally regulated NFI gene family during phorbol ester-induced differentiation of human leukemic cells.	NFIA NFIX	1.69e-05	4	59	2	9052991
Pubmed	Expression patterns of the four nuclear factor I genes during mouse embryogenesis indicate a potential role in development.	NFIA NFIX	1.69e-05	4	59	2	9056636
Pubmed	Genomic organization, splice products and mouse chromosomal localization of genes for transcription factor Nuclear Factor One.	NFIA NFIX	1.69e-05	4	59	2	12568726
Pubmed	SOX1 links the function of neural patterning and Notch signalling in the ventral spinal cord during the neuron-glial fate switch.	SOX1 SOX2 NFIA	2.02e-05	31	59	3	19723505
Pubmed	Identification of bZIP interaction partners of viral proteins HBZ, MEQ, BZLF1, and K-bZIP using coiled-coil arrays.	ATF3 BATF3 ATF2	2.44e-05	33	59	3	20102225
Pubmed	Human transcription factor protein interaction networks.	DPF1 SOX2 NFIA NOP53 NFIX BAZ1B ZNF318 SPEN NUDC CXXC1 SORL1	2.47e-05	1429	59	11	35140242
Pubmed	Pancreatic β cell identity is maintained by DNA methylation-mediated repression of Arx.	ARX DNMT1	2.82e-05	5	59	2	21497756
Pubmed	Oct4 is required ~E7.5 for proliferation in the primitive streak.	SOX1 SOX2	2.82e-05	5	59	2	24244203
Pubmed	Nuclear pores protect genome integrity by assembling a premitotic and Mad1-dependent anaphase inhibitor.	MAD1L1 CDC20	2.82e-05	5	59	2	24581499
Pubmed	Transcriptional regulation of STAT3 by SPTBN1 and SMAD3 in HCC through cAMP-response element-binding proteins ATF3 and CREB2.	ATF3 ATF2	2.82e-05	5	59	2	25096061
Pubmed	The Axin/TNKS complex interacts with KIF3A and is required for insulin-stimulated GLUT4 translocation.	SLC2A4 AXIN1	2.82e-05	5	59	2	22473005
Pubmed	Control of neurogenic competence in mammalian hypothalamic tanycytes.	NFIA NFIX	2.82e-05	5	59	2	34049878
Pubmed	The G2-to-M Transition Is Ensured by a Dual Mechanism that Protects Cyclin B from Degradation by Cdc20-Activated APC/C.	MAD1L1 CDC20	2.82e-05	5	59	2	31588029
Pubmed	Combinatorial bZIP dimers display complex DNA-binding specificity landscapes.	ATF3 ATF2	2.82e-05	5	59	2	28186491
Pubmed	SH3BP4 is a negative regulator of amino acid-Rag GTPase-mTORC1 signaling.	RRAGA RRAGB	2.82e-05	5	59	2	22575674
Pubmed	A gene mapping to the sex-determining region of the mouse Y chromosome is a member of a novel family of embryonically expressed genes.	SOX1 SOX2	2.82e-05	5	59	2	2374589
Pubmed	Regulation of the CYP3A4 and CYP3A7 promoters by members of the nuclear factor I transcription factor family.	NFIA NFIX	2.82e-05	5	59	2	19706729
Pubmed	MAD2B is an inhibitor of the anaphase-promoting complex.	MAD1L1 CDC20	2.82e-05	5	59	2	11459826
Pubmed	Cross-family dimerization of transcription factors Fos/Jun and ATF/CREB alters DNA binding specificity.	ATF3 ATF2	2.82e-05	5	59	2	1827203
Pubmed	TBK1 phosphorylation activates LIR-dependent degradation of the inflammation repressor TNIP1.	SART1 RPL27 NOP53 LUC7L2 RPS9 CLINT1 IK CDC20 HSP90AA5P	2.99e-05	949	59	9	36574265
Pubmed	The Nse5/6-like SIMC1-SLF2 complex localizes SMC5/6 to viral replication centers.	SART1 RPL27 NOP53 BAZ1B ZNF318 CLINT1 IK SPEN DNMT1	3.11e-05	954	59	9	36373674
Pubmed	Impact of cytosine methylation on DNA binding specificities of human transcription factors.	DPF1 ZNF821 NFIX ARX ATF3 BATF3 ATF2	3.72e-05	544	59	7	28473536
Pubmed	SRCAP complex promotes lung cancer progression by reprograming the oncogenic transcription of Hippo-YAP/TAZ signaling pathway.	BAZ1B ZNF318 CLINT1 IK SPEN NUDC DNMT1	3.94e-05	549	59	7	38280479
Pubmed	MYC multimers shield stalled replication forks from RNA polymerase.	SART1 RPL27 NOP53 LUC7L2 RPS9 BAZ1B IK CDC20 DNMT1	4.11e-05	989	59	9	36424410
Pubmed	The E3 ubiquitin ligase HECTD1 contributes to cell proliferation through an effect on mitosis.	SART1 RPL27 NOP53 RPS9 BAZ1B ATG14 IK DNMT1	4.12e-05	759	59	8	35915203
Pubmed	A novel human nucleolar protein, Nop132, binds to the G proteins, RRAG A/C/D.	RRAGA RRAGB	4.23e-05	6	59	2	14660641
Pubmed	Probing the in vivo function of Mad1:C-Mad2 in the spindle assembly checkpoint.	MAD1L1 CDC20	4.23e-05	6	59	2	21772247
Pubmed	Transcription factor ATF cDNA clones: an extensive family of leucine zipper proteins able to selectively form DNA-binding heterodimers.	ATF3 ATF2	4.23e-05	6	59	2	2516827
Pubmed	DNA Methyltransferase 1 Is Indispensable for Development of the Hippocampal Dentate Gyrus.	SOX2 DNMT1	4.23e-05	6	59	2	27251626
Pubmed	Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B.	RRAGA RRAGB	4.23e-05	6	59	2	11073942
Pubmed	Regulation of TORC1 in response to amino acid starvation via lysosomal recruitment of TSC2.	RRAGA RRAGB	4.23e-05	6	59	2	24529380
Pubmed	The N-terminal transactivation domain of ATF2 is a target for the co-operative activation of the c-jun promoter by p300 and 12S E1A.	ATF3 ATF2	4.23e-05	6	59	2	10327051
Pubmed	Recruitment of folliculin to lysosomes supports the amino acid-dependent activation of Rag GTPases.	RRAGA RRAGB	4.23e-05	6	59	2	24081491
Pubmed	Absence of the transcription factor Nfib delays the formation of the basilar pontine and other mossy fiber nuclei.	NFIA NFIX	4.23e-05	6	59	2	19107796
Pubmed	BUBR1 and closed MAD2 (C-MAD2) interact directly to assemble a functional mitotic checkpoint complex.	MAD1L1 CDC20	4.23e-05	6	59	2	21525009
Pubmed	The Rag GTPases bind raptor and mediate amino acid signaling to mTORC1.	RRAGA RRAGB	4.23e-05	6	59	2	18497260
Pubmed	Temporal control of a dendritogenesis-linked gene via REST-dependent regulation of nuclear factor I occupancy.	NFIA NFIX	4.23e-05	6	59	2	21270437
Pubmed	Networks of bZIP protein-protein interactions diversified over a billion years of evolution.	ATF3 BATF3 ATF2	4.38e-05	40	59	3	23661758
Pubmed	Large-scale characterization of HeLa cell nuclear phosphoproteins.	SART1 NFIA MAD1L1 BAZ1B ZNF318 SPEN ATF2 DNMT1	4.73e-05	774	59	8	15302935
Pubmed	High-throughput analyses of hnRNP H1 dissects its multi-functional aspect.	SART1 LUC7L2 NFIX MAD1L1 COQ8B BRCC3 APOL2 CXXC1 SEC14L1	5.26e-05	1021	59	9	26760575
Pubmed	Direct interaction between hnRNP-M and CDC5L/PLRG1 proteins affects alternative splice site choice.	SART1 LUC7L2 MAD1L1 CLINT1 IK CDC20 NUDC	5.69e-05	582	59	7	20467437
Pubmed	Sestrins function as guanine nucleotide dissociation inhibitors for Rag GTPases to control mTORC1 signaling.	RRAGA RRAGB	5.91e-05	7	59	2	25259925
Pubmed	Interplay of SOX and POU factors in regulation of the Nestin gene in neural primordial cells.	SOX1 SOX2	5.91e-05	7	59	2	15456859
Pubmed	Thyroid hormone receptor interacting protein 13 (TRIP13) AAA-ATPase is a novel mitotic checkpoint-silencing protein.	MAD1L1 CDC20	5.91e-05	7	59	2	25012665
Pubmed	Cellular munc18c levels can modulate glucose transport rate and GLUT4 translocation in 3T3L1 cells.	STXBP1 SLC2A4	5.91e-05	7	59	2	12297296
Pubmed	Pairing SOX off: with partners in the regulation of embryonic development.	SOX1 SOX2	5.91e-05	7	59	2	10729834
Interaction	ETV3 interactions	DPF1 SOX2 NFIA NOP53 BAZ1B	3.63e-05	128	59	5	int:ETV3
Interaction	BATF interactions	ATF3 BATF3 ATF2	4.62e-05	24	59	3	int:BATF
Interaction	NFIX interactions	DPF1 SOX2 NFIA NFIX SPEN CXXC1	5.23e-05	227	59	6	int:NFIX
Interaction	SQSTM1 interactions	SOX2 SART1 MAGI1 STXBP1 CLPB LUC7L2 NFIX BRCC3 CLINT1 RRAGB IK AXIN1 DNMT1	5.56e-05	1257	59	13	int:SQSTM1
Interaction	YAP1 interactions	SOX2 RPL27 RPS9 BAZ1B ZNF318 CLINT1 IK CDC20 SPEN NUDC AXIN1 DNMT1	6.50e-05	1095	59	12	int:YAP1
Interaction	SMARCA2 interactions	DPF1 SOX2 ZNF821 NFIA NFIX BAZ1B CXXC1	6.56e-05	346	59	7	int:SMARCA2
Interaction	DAXX interactions	BAZ1B CDC20 SPEN CXXC1 SLC2A4 AXIN1 DNMT1	7.44e-05	353	59	7	int:DAXX
Interaction	PAXIP1 interactions	SOX2 NFIA LUC7L2 NFIX BRCC3 CDC20 CXXC1	8.26e-05	359	59	7	int:PAXIP1
Interaction	JUND interactions	SOX2 ATF3 BATF3 ATF2	8.45e-05	79	59	4	int:JUND
Interaction	IRF2BP1 interactions	SOX2 STXBP1 NFIX ATF2	9.32e-05	81	59	4	int:IRF2BP1
Interaction	NR2C1 interactions	SOX2 NFIA NFIX DNMT1	1.07e-04	84	59	4	int:NR2C1
Interaction	TLE3 interactions	SOX2 NFIA NFIX CECR2 ATF3 ZNF318 SPEN	1.10e-04	376	59	7	int:TLE3
Interaction	CTNNB1 interactions	FANCC SOX1 SOX2 MAGI1 LUC7L2 BRCC3 NUDC ATF2 CDH7 AXIN1 DNMT1	1.44e-04	1009	59	11	int:CTNNB1
Interaction	ARID1A interactions	DPF1 SOX2 NFIA NFIX BAZ1B IK	1.53e-04	276	59	6	int:ARID1A
Interaction	ZNF608 interactions	SOX2 NFIA NFIX CXXC1	1.59e-04	93	59	4	int:ZNF608
Interaction	EP300 interactions	SOX2 RPL27 CLPB NFIA NOP53 BAZ1B CLINT1 IK CDC20 NUDC ATF2 CXXC1 DNMT1	1.67e-04	1401	59	13	int:EP300
Interaction	ARID1B interactions	DPF1 SOX2 NFIA NFIX BATF3	1.68e-04	177	59	5	int:ARID1B
Interaction	DPF1 interactions	DPF1 SOX2 NFIA NFIX	1.73e-04	95	59	4	int:DPF1
Interaction	SOX9 interactions	DPF1 NFIA NFIX SPEN	1.87e-04	97	59	4	int:SOX9
Interaction	RNF2 interactions	SOX2 SART1 RPL27 LUC7L2 PCLO BAZ1B ATG14 CLINT1 IK CXXC1	1.89e-04	866	59	10	int:RNF2
Interaction	ATF4 interactions	SOX2 ATF3 BATF3 ATF2	1.95e-04	98	59	4	int:ATF4
Interaction	SMARCD2 interactions	DPF1 SOX2 NFIA NFIX BAZ1B	1.97e-04	183	59	5	int:SMARCD2
Interaction	MRPS2 interactions	SOX2 CLPB NOP53 MRPL55 RPS9 COQ8B	2.00e-04	290	59	6	int:MRPS2
Interaction	CEBPA interactions	SART1 RPL27 RPS9 ATF3 ZNF318 CLINT1 BATF3 IK SPEN NUDC ATF2 DNMT1	2.19e-04	1245	59	12	int:CEBPA
Interaction	MBD3 interactions	SOX2 BAZ1B IK SPEN NUDC DNMT1	2.20e-04	295	59	6	int:MBD3
Interaction	SOX1 interactions	SOX1 SOX2	2.33e-04	8	59	2	int:SOX1
Interaction	H3C1 interactions	NFIA LUC7L2 GCC2 RPS9 BAZ1B IK CDC20 SPEN DNAH8 DNMT1	2.60e-04	901	59	10	int:H3C1
Interaction	HDAC4 interactions	MAGI1 RPL27 FRY CLPB LUC7L2 ATF3 NUDC ATF2 DNMT1	2.92e-04	744	59	9	int:HDAC4
Interaction	FOS interactions	DPF1 NFIA NFIX ATF3 ATF2 SORL1	2.97e-04	312	59	6	int:FOS
Interaction	MECP2 interactions	DPF1 SOX2 SART1 RPL27 LUC7L2 CECR2 MRPL55 RPS9 IK SPEN CXXC1 DNMT1	2.97e-04	1287	59	12	int:MECP2
Interaction	IRF2BP2 interactions	SOX2 NFIA NFIX SPEN	3.04e-04	110	59	4	int:IRF2BP2
Interaction	KMT2A interactions	SOX2 NFIX RPS9 CDC20 DNAH8 CXXC1	3.07e-04	314	59	6	int:KMT2A
Interaction	BACH1 interactions	SOX2 BRCC3 BATF3 ATF2	3.14e-04	111	59	4	int:BACH1
Interaction	SIX4 interactions	SOX2 NFIA NFIX	3.31e-04	46	59	3	int:SIX4
Interaction	PML interactions	SART1 MAD1L1 RPS9 BRCC3 ZNF318 CLINT1 IK NUDC ATF2 AXIN1	3.44e-04	933	59	10	int:PML
Interaction	YY1 interactions	SOX2 SART1 NFIA NFIX ATF2 CXXC1 SEMA4C	3.49e-04	454	59	7	int:YY1
Interaction	CHD4 interactions	SOX2 SART1 RPL27 LUC7L2 RPS9 BAZ1B IK SPEN CXXC1 DNMT1	3.58e-04	938	59	10	int:CHD4
Interaction	BCL7C interactions	DPF1 SOX2 NFIA NFIX	3.60e-04	115	59	4	int:BCL7C
Interaction	PARP1 interactions	SOX2 SART1 MAGI1 RPL27 CLPB NFIA NOP53 NFIX CECR2 BAZ1B ATF3 DNMT1	3.64e-04	1316	59	12	int:PARP1
Interaction	BCLAF1 interactions	SOX2 RPL27 LUC7L2 RPS9 IK SPEN	3.81e-04	327	59	6	int:BCLAF1
Interaction	JUNB interactions	BRCC3 ATF3 BATF3 ATF2	3.96e-04	118	59	4	int:JUNB
Interaction	IK interactions	FANCC RPL27 LUC7L2 IK SPEN	4.14e-04	215	59	5	int:IK
Interaction	ATM interactions	ZNF821 NOP53 BAZ1B IK ATF2 DNMT1	4.20e-04	333	59	6	int:ATM
Interaction	TIMM9 interactions	SART1 NUDC ATF2	4.76e-04	52	59	3	int:TIMM9
Cytoband	1q32.3	ATF3 BATF3	6.01e-04	28	59	2	1q32.3
GeneFamily	Basic leucine zipper proteins	ATF3 BATF3 ATF2	1.72e-04	49	40	3	506
GeneFamily	Zinc fingers CXXC-type	CXXC1 DNMT1	3.11e-04	12	40	2	136
GeneFamily	SRY-boxes	SOX1 SOX2	7.97e-04	19	40	2	757
GeneFamily	Immunoglobulin like domain containing\|Semaphorins	SEMA6B SEMA4C	8.84e-04	20	40	2	736
GeneFamily	PHD finger proteins	DPF1 BAZ1B CXXC1	1.03e-03	90	40	3	88
Coexpression	GSE25677_MPL_VS_R848_STIM_BCELL_DN	FRY ZNF318 CLINT1 LMBRD1 DNMT1 SORL1	3.00e-06	181	58	6	M8187
Coexpression	GSE21360_NAIVE_VS_TERTIARY_MEMORY_CD8_TCELL_DN	RPL27 ATG14 ZNF318 CDC20 SEC14L1 SEMA4C	5.33e-06	200	58	6	M7612
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Central Eminence_top-relative-expression-ranked_500	SOX2 MAGI1 GCC2 CECR2 PCLO ARX RRAGB CDH7 SLC2A4	6.40e-06	496	57	9	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Central Eminence_500
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_top-relative-expression-ranked_500	SOX2 MAGI1 CECR2 PCLO ARX RRAGB ABLIM2 CDH7	4.86e-05	493	57	8	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_500
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_top-relative-expression-ranked_1000	SOX2 MAGI1 NFIA NFIX GCC2 CECR2 PCLO ARX RRAGB ABLIM2 CDH7	5.16e-05	983	57	11	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_1000
CoexpressionAtlas	DevelopingGonad_e14.5_ testes_emap-6710_top-relative-expression-ranked_200	SOX2 CLPB LUC7L2 ARX CXXC1	6.76e-05	159	57	5	gudmap_developingGonad_e14.5_ testes_200
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_emap-3087_k-means-cluster#4_top-relative-expression-ranked_100	SOX2 ATF3	1.47e-04	7	57	2	gudmap_developingLowerUrinaryTract_e13.5_bladder neck-urethr mesench_100_k4
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_top-relative-expression-ranked_500_k-means-cluster#1	SOX2 PCLO RRAGB	1.56e-04	39	57	3	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_500_K1
ToppCell	ILEUM-non-inflamed-(2)_B_cell-(2)_Naive_B_cells\|(2)_B_cell / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)	RPL27 NOP53 RPS9 ZNF318 SORL1	2.51e-06	163	59	5	9add806d706f7170a49b2c2dcc14343e9befd26c
ToppCell	frontal_cortex-Neuronal-GABAergic_neuron\|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	SOX1 SOX2 MAGI1 ARX RRAGB	4.30e-06	182	59	5	f2a1784ffcba9b27132e0db21e574cbd8a0a6418
ToppCell	metastatic_Brain-T/NK_cells-Naive_CD4+_T\|T/NK_cells / Location, Cell class and cell subclass	RPL27 FRY NOP53 RPS9 SORL1	4.66e-06	185	59	5	2eee26c28b130be6163f27bc608384c054238501
ToppCell	Brain_organoid-organoid_Kanton_Nature-Organoid-2M-Neuronal-cortical_neurons_1\|Organoid-2M / Sample Type, Dataset, Time_group, and Cell type.	DPF1 STXBP1 NFIA PCLO CDH7	6.48e-06	198	59	5	d81f35c0066558ff96dd06f58fca72cd82e681e8
ToppCell	Posterior_cortex-Neuronal-Inhibitory\|Posterior_cortex / BrainAtlas - Mouse McCarroll V32	SOX1 SOX2 ARX RRAGB	7.11e-05	167	59	4	9a84f45345c75f2c8ff38a04245aadee2a26a240
ToppCell	PND14-Immune-Immune_Myeloid-Dendritic\|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	MAD1L1 BATF3 RRAGB CDC20	7.27e-05	168	59	4	9b8a74abb83c64f0b5829dcb4275f722c82b45dc
ToppCell	PND14-Immune-Immune_Myeloid-Dendritic-cDC1\|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	MAD1L1 BATF3 RRAGB CDC20	7.27e-05	168	59	4	4b152b8d0f4a66faf664dfacb7914b18d60ce64a
ToppCell	PND14-Immune-Immune_Myeloid-Dendritic-cDC1-cDC1_G2M\|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	MAD1L1 BATF3 RRAGB CDC20	7.27e-05	168	59	4	c3169ad8f4130ef18777ed86770bb722ffb5db85
ToppCell	3'_v3-Lung-Hematopoietic_progenitors\|Lung / Manually curated celltypes from each tissue	DPF1 PCLO CDH7 SLC2A4	9.10e-05	178	59	4	c7895ba2e2e93b26da91faa2a3bf9d070dd4c3bd
ToppCell	3'_v3-Lung-Hematopoietic_progenitors-HSC-MPP\|Lung / Manually curated celltypes from each tissue	DPF1 PCLO CDH7 SLC2A4	9.29e-05	179	59	4	2c03b82ec9b4dee2501752b8d83e7028f0aaed77
ToppCell	ILEUM-non-inflamed-(7)_Lymphatics\|non-inflamed / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)	MAGI1 FRY NFIA PCLO	9.29e-05	179	59	4	99777a8931356d1206b8ab22aaa1b1d5a600b809
ToppCell	facs-Marrow-T_cells-18m-Lymphocytic-naive_B_cell\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RPL27 RPS9 ZNF318 LMBRD1	9.50e-05	180	59	4	243622eee35d38748e945677ff115616e763e3b4
ToppCell	droplet-Trachea-3m-Mesenchymal-myofibroblast-tracheobronchial_smooth_muscle_cell-smooth_muscle_cell_of_trachea_l6-17\|3m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	SEMA6B MAGI1 RRAGB SEMA4C	9.50e-05	180	59	4	455d1e3ccf2ab609954f3b870e8f514ddca735f4
ToppCell	facs-Marrow-T_cells-18m-Lymphocytic-naive_B_cell\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RPL27 RPS9 ZNF318 LMBRD1	9.50e-05	180	59	4	3a8d9a71efe113d1df3933902a625c0a56812074
ToppCell	droplet-Marrow-nan-3m-Myeloid-nan\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	GCC2 CECR2 ATF3 CLINT1	9.91e-05	182	59	4	f8c73baaaca145e2efc48f10f636feb79c8fc779
ToppCell	droplet-Marrow-nan-3m\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	GCC2 BAZ1B ATF3 CLINT1	1.03e-04	184	59	4	1154a5ad7b8512272b7476f949ddac350910bfb7
ToppCell	primary_visual_cortex-Neuronal-GABAergic_neuron\|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	SOX1 SOX2 ARX RRAGB	1.06e-04	185	59	4	739260f8abebaf10a5cc49d91726278579e26170
ToppCell	droplet-Marrow-nan-3m-Myeloid\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	GCC2 CECR2 ATF3 CLINT1	1.06e-04	185	59	4	7adfa929930cfa795cbfbd9f1a0b439e08aa765d
ToppCell	facs-Large_Intestine-Proximal-3m-Epithelial-Lgr5-_amplifying_undifferentiated_cell\|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RPS9 BAZ1B ATF3 DNMT1	1.08e-04	186	59	4	15ab6666748a641226e42e6ca6eeaf186a501c95
ToppCell	facs-Marrow-B-cells-18m-Lymphocytic-naive_B_cell\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RPL27 RPS9 ZNF318 LMBRD1	1.08e-04	186	59	4	664295cd508dc3894d55da7e9d9cd75bf1432f52
ToppCell	facs-Large_Intestine-Proximal-3m-Epithelial-epithelial_cell_of_large_intestine\|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RPS9 BAZ1B ATF3 DNMT1	1.08e-04	186	59	4	4ed1b97e2552f3c4134f25665d7513498ffac16c
ToppCell	390C-Epithelial_cells-Epithelial-F_(Ciliated)\|390C / Donor, Lineage, Cell class and subclass (all cells)	SOX2 ERICH3 ARX GRIN3B	1.08e-04	186	59	4	708c5edefe36c91df27cf53c1b5101fb2030cc5a
ToppCell	facs-Marrow-B-cells-18m-Lymphocytic-naive_B_cell\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RPL27 RPS9 ZNF318 LMBRD1	1.08e-04	186	59	4	b30eb0c1673ca1ebc9b6248877d86fd6d6d14470
ToppCell	390C-Epithelial_cells-Epithelial-F_(Ciliated)-\|390C / Donor, Lineage, Cell class and subclass (all cells)	SOX2 ERICH3 ARX GRIN3B	1.08e-04	186	59	4	029390c4aaf64e6bcd86124cd4a6dd2e6f3a374b
ToppCell	3'_v3-blood\|World / Manually curated celltypes from each tissue	SEMA6B RPL27 RPS9 SORL1	1.10e-04	187	59	4	9e70e8d7cd8ae517ddf5fd56c69ec16fc33ddff5
ToppCell	PCW_07-8.5-Epithelial-Epithelial_airway-epi_proximal_progenitor1_(6)\|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung	SOX2 FRY PCLO SORL1	1.15e-04	189	59	4	7659c7bbd58ee959a159294fb8d17317bbcc5681
ToppCell	10x_3'_v2v3-Neoplastic-Stem-like-NPC-like-NPC-like_neural-B\|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	STXBP1 NFIA NFIX ARX	1.15e-04	189	59	4	8e6b6025f5554672e26a5d19fe365acb4333789c
ToppCell	ILEUM-non-inflamed-(2)_Naive_B_cells\|non-inflamed / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)	RPL27 NOP53 RPS9 ZNF318	1.15e-04	189	59	4	43378b9fd252642c5c1606d9519dfe75d6bebebe
ToppCell	Fetal_29-31_weeks-Epithelial-alveolar_epithelial_cell_type_1/2_(AT1/AT2-like)-D150\|Fetal_29-31_weeks / Lineage, Cell type, age group and donor	MAGI1 FRY CECR2 ATF3	1.17e-04	190	59	4	8aea807a2bcf0b653b4de6202b6ecb0f0683cc2e
ToppCell	renal_medulla_nuclei-Adult_normal_reference\|renal_medulla_nuclei / Celltypes from Cells and Nuclei per compartment and clinical group	MAGI1 FRY ATF3 SEC14L1	1.17e-04	190	59	4	f1363f7806cfc4f14fbc1b0e8dac2de813a88eee
ToppCell	ILEUM-inflamed-(2)_Naive_B_cells\|inflamed / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)	RPL27 NOP53 RPS9 ZNF318	1.17e-04	190	59	4	a08d10f8145247d16c952a6f83957f5b57c6940b
ToppCell	Brain_organoid-organoid_Paulsen_bioRxiv-3.5_mon-Neuronal-Immature_INs\|3.5_mon / Sample Type, Dataset, Time_group, and Cell type.	SOX1 SOX2 MAGI1 ARX	1.17e-04	190	59	4	842760bfe0a52e67bad800efa7d99448a4a23ebb
ToppCell	(4)_B_mantle\|World / Spleen cell shreds - cell class (v1) and cell subclass (v1)	RPL27 NOP53 RPS9 ZNF318	1.19e-04	191	59	4	5dab7f26c59838080787efad963b9cfcfa9a5f13
ToppCell	PBMC-Convalescent-Lymphocyte-T/NK-CD4+_T-CD4+_T_naive-\|Convalescent / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	RPL27 NOP53 GCC2 RPS9	1.19e-04	191	59	4	f398344aaa79fc93d792e241b634a6afe4aff33d
ToppCell	Neuron-Postmitotic-Inhibitory_Neuron\|World / Primary Cells by Cluster	SOX1 MAGI1 MAD1L1 ARX	1.19e-04	191	59	4	4dd9c8117c4499ed9bde127baf2598603a82080d
ToppCell	TCGA-Thryoid-Primary_Tumor-Thyroid_Papillary_Carcinoma-Classical-5\|TCGA-Thryoid / Sample_Type by Project: Shred V9	SART1 MRPL55 RPS9 NUDC	1.19e-04	191	59	4	f2fe8fe316e449f452075aa37d5e31917221a335
ToppCell	PBMC-Convalescent-Lymphocyte-T/NK-CD4+_T-CD4+_T_naive\|Convalescent / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	RPL27 NOP53 GCC2 RPS9	1.19e-04	191	59	4	11da47d96f44ba629e3299667495e7daddbbe86c
ToppCell	tumor_Lung-T/NK_cells-Naive_CD4+_T\|T/NK_cells / Location, Cell class and cell subclass	RPL27 NOP53 RPS9 SORL1	1.19e-04	191	59	4	4eecf2d7f434f3787a9bd7b572d6fde10c751c14
ToppCell	BALF-PFMC-Severe-critical_progression_d12-22_with-steroid-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c07-AHNAK\|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)	FRY NOP53 ATF3 SORL1	1.19e-04	191	59	4	e94dfd2d8da81bfd16f2f1a4f3ac27b078eeb3ca
ToppCell	PBMC-Convalescent-Lymphocyte-T/NK-CD4+_T-CD4+_T_naive\|Convalescent / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	RPL27 NOP53 GCC2 RPS9	1.19e-04	191	59	4	ffcb2c8dbcf40281b439f4b719b5b341972ffb9a
ToppCell	PBMC-Convalescent-Lymphocyte-T/NK-CD4+_T-CD4+_T_naive-\|Convalescent / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	RPL27 NOP53 GCC2 RPS9	1.19e-04	191	59	4	ffe88d1ad676c745c76db89f766062fd365329f4
ToppCell	COVID-19_Convalescent-Lymphoid_T/NK-CD4+_T_naive\|COVID-19_Convalescent / Disease group, lineage and cell class	RPL27 NOP53 GCC2 RPS9	1.22e-04	192	59	4	ad7207810116e73d461242e42071901b6a9f48c6
ToppCell	remission-CD4+_T_naive\|remission / disease stage, cell group and cell class	RPL27 NOP53 GCC2 RPS9	1.22e-04	192	59	4	d96b2122e28c735d8002ad6eb2d3d52c8e9ccf2b
ToppCell	Neuron-Postmitotic-Inhibitory_Neuron-SST-MGE1\|World / Primary Cells by Cluster	SOX1 MAGI1 MAD1L1 ARX	1.22e-04	192	59	4	bcc499f4c7ba2898ecd9c47bf68c92ed359b81ba
ToppCell	remission-CD4+_T_naive\|World / disease stage, cell group and cell class	RPL27 NOP53 GCC2 RPS9	1.22e-04	192	59	4	4bd94ce876d70f93dbdfad1dcd09e1468213cf57
ToppCell	PCW_07-8.5-Epithelial-Epithelial_neuroendo-epi_NE_progenitor_(7)\|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung	SOX2 FRY PCLO CDH7	1.22e-04	192	59	4	b99f8236ef4ccdc75c02abea381cae6453205f6f
ToppCell	Neuron-Postmitotic-Inhibitory_Neuron-SST-MGE1-4\|World / Primary Cells by Cluster	SOX2 MAGI1 RPL27 ARX	1.24e-04	193	59	4	2eb6e4cff4fe3ce564c1581f6f7df4834895aaa9
ToppCell	NS-moderate-d_0-4\|moderate / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)	SOX2 ERICH3 NFIA NFIX	1.24e-04	193	59	4	ea345d34440b25f65358a53dc72831998d1c3620
ToppCell	10x3'2.3-week_17-19-Myeloid_neutrophil-granulo-eo/baso/mast-basophil\|week_17-19 / cell types per 3 fetal stages;per 3',per 5'	FANCC FRY CLINT1 SEMA4C	1.27e-04	194	59	4	5da8873cddff582e5693b32fd3aaebc102f65fc0
ToppCell	BAL-Severe-Myeloid-MoAM-MoAM5-\|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	SEMA6B RPL27 RPS9 ATF3	1.27e-04	194	59	4	c53478057674d70b79df8a3f476d15dea1925753
ToppCell	BAL-Severe-Myeloid-MoAM-MoAM5\|Severe / Location, Disease Group, Cell group, Cell class (2021.03.09)	SEMA6B RPL27 RPS9 ATF3	1.27e-04	194	59	4	2ab3f75b795a0ee4fe0f8eeba33093fcc77935f5
ToppCell	BAL-Severe-Myeloid-MoAM-MoAM5-\|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	SEMA6B RPL27 RPS9 ATF3	1.27e-04	194	59	4	8805c90e4284a81a6c8078f2d2417ae77b4e5c63
ToppCell	BAL-Severe-Myeloid-MoAM-MoAM5\|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	SEMA6B RPL27 RPS9 ATF3	1.27e-04	194	59	4	86d52467b05a0018517377c9c441245501f71d91
ToppCell	PCW_07-8.5-Epithelial-Epithelial_neuroendo\|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung	SOX2 ERICH3 PCLO ARX	1.27e-04	194	59	4	b30379f8dc41c86c746af9930541fbb4819d8fa0
ToppCell	PCW_07-8.5-Epithelial\|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung	SOX2 FRY PCLO SORL1	1.27e-04	194	59	4	f63ceedb88a9abc8644ee94adfd541e7817c1e3a
ToppCell	PBMC-Convalescent-Lymphocyte-T/NK-CD4+_T\|Convalescent / Location, Disease Group, Cell group, Cell class (2021.03.09)	RPL27 NOP53 GCC2 RPS9	1.27e-04	194	59	4	31a98ce929ee6cf6a9747e384f9a06336af49fd5
ToppCell	PBMC-Convalescent-Lymphocyte-T/NK-CD4+_T\|Convalescent / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	RPL27 NOP53 GCC2 RPS9	1.27e-04	194	59	4	89e30624e389ff7b4a3b6e02d2b77cdeae263ded
ToppCell	ILEUM-inflamed-(2)_B_cell-(2)_Naive_B_cells\|(2)_B_cell / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)	RPL27 RPS9 ZNF318 SORL1	1.27e-04	194	59	4	a89e67a40382600739be92e395bf47dd44aa4122
ToppCell	PBMC\|World / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	RPL27 NOP53 RPS9 SORL1	1.29e-04	195	59	4	8cd7667a65d77dd7b301090a9b65aba254741375
ToppCell	PBMC\|World / Location, Disease Group, Cell group, Cell class (2021.03.09)	RPL27 NOP53 RPS9 SORL1	1.29e-04	195	59	4	211eba45a502b961873ca2d4642f7852e6e89d7a
ToppCell	hematopoetic_progenitors-CD34+_HSC\|hematopoetic_progenitors / Lineage and Cell class	NFIA NOP53 RPS9 CDH7	1.32e-04	196	59	4	d3e20212c15cff0a3c4e23e8b94715b5822a43e2
ToppCell	Bronchial-NucSeq-Stromal-Schwann-Schwann_Myelinating\|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations	SOX2 ANKZF1 CDH7 SEMA4C	1.32e-04	196	59	4	efeb272bc9e37e60d15d056b7574991c5c7501bc
ToppCell	ILEUM-inflamed-(1)_Naive_T_cells\|inflamed / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)	RPL27 NOP53 RPS9 SORL1	1.32e-04	196	59	4	72a34b81663475ab378b3bb9a02136df286881b3
ToppCell	10x_3'_v2v3-Neoplastic-Stem-like-NPC-like-NPC-like_neural\|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	DPF1 NFIA NFIX ARX	1.34e-04	197	59	4	47c4d9de71a435119c71f5219de836cf9b2aab6d
ToppCell	normal-na-Lymphocytic_T-T4_naive\|normal / PBMC cell types (v2) per disease, treatment status, and sex	RPL27 NOP53 GCC2 RPS9	1.34e-04	197	59	4	71d93634c2b3fd2805aa87e63d02bda04ae87bba
ToppCell	normal_Lymph_Node-T/NK_cells-Naive_CD4+_T\|normal_Lymph_Node / Location, Cell class and cell subclass	RPL27 NOP53 RPS9 SORL1	1.34e-04	197	59	4	a25954c534da16d5ce57cfe3a3a01beb2f556a5c
ToppCell	Neuron-Postmitotic-Excitatory_Neuron_-Upper_Layer_PFC-23\|World / Primary Cells by Cluster	ZNF821 NOP53 RRAGA PCLO	1.34e-04	197	59	4	def63e7e28dd398722e528b7816a34de92552419
ToppCell	Neuron-Postmitotic-Excitatory_Neuron_-Upper_Layer_PFC\|World / Primary Cells by Cluster	ZNF821 NOP53 RRAGA PCLO	1.34e-04	197	59	4	26fd54acd90292a01ef0d892ba16ccdade987f36
ToppCell	normal-na-Lymphocytic_T-T4_naive-female\|normal / PBMC cell types (v2) per disease, treatment status, and sex	RPL27 NOP53 GCC2 RPS9	1.34e-04	197	59	4	357c889179ce3d6db87a4437a34450010de63d1d
ToppCell	droplet-Skin-nan-21m-Epithelial-nan\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	NOP53 NFIX RPS9 ATF3	1.37e-04	198	59	4	e2d1ef4a4c89ce53b47d7d5b8a45e71d3117e1b1
ToppCell	Goblet_2\|World / shred by cell class for nasal brushing	RPL27 NFIA NOP53 RPS9	1.37e-04	198	59	4	6f9ffcef84dd2ab6084281f7b5169335e323304d
ToppCell	droplet-Skin-nan-21m-Epithelial\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	NOP53 NFIX RPS9 ATF3	1.37e-04	198	59	4	38a58e6eaae89ce1cadf2e04169c974e13587e50
ToppCell	Brain_organoid-organoid_Kanton_Nature-Organoid-1M-Radial_glial-RGCs_early_1\|Organoid-1M / Sample Type, Dataset, Time_group, and Cell type.	SOX2 RPL27 NFIA RPS9	1.40e-04	199	59	4	afed9fefd1355eb3bc17fbc7ce04daad890a0f9f
ToppCell	Healthy/Control\|World / Disease group and Cell class	RPL27 NOP53 GCC2 RPS9	1.40e-04	199	59	4	2623c42b3e79e401a485879b52e8bbcbc581544d
ToppCell	control-Epithelial-Secretory\|control / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls	SOX2 NFIA CLINT1 SORL1	1.40e-04	199	59	4	262e5b8a52c8ddb0b47048c786e8bdb7158e1b9a
ToppCell	10x_3'_v2v3-Neoplastic-Stem-like\|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	DPF1 SOX2 MAGI1 NFIA	1.40e-04	199	59	4	94baf00dad27964392c3fc34970a4e79d576d0d3
ToppCell	Brain_organoid-organoid_Tanaka_cellReport-5w-Macroglial-Astrocyte\|5w / Sample Type, Dataset, Time_group, and Cell type.	SOX2 RPL27 NOP53 RPS9	1.42e-04	200	59	4	b64f3f1484de49777efb9b998577ff6bbb6e6861
ToppCell	Brain_organoid-organoid_Tanaka_cellReport-3m-OPC_related-Oligodendrocyte/OPC\|3m / Sample Type, Dataset, Time_group, and Cell type.	SOX2 MAGI1 NFIA RPS9	1.42e-04	200	59	4	7557ea33c3d080d0fa4ca0c2703279932d01e6d0
ToppCell	LPS_IL1RA-Endothelial-Endothelial-Activated_Gen_Cap\|LPS_IL1RA / Treatment groups by lineage, cell group, cell type	STXBP1 ATF3 APOL2 SEC14L1	1.42e-04	200	59	4	2d07237022b409c4fac6fcf99b68c8affb3007cd
ToppCell	Fetal_brain-fetalBrain_Zhong_nature-GW26-Neuronal-GABAergic_neurons\|GW26 / Sample Type, Dataset, Time_group, and Cell type.	DPF1 PCLO MAD1L1 ARX	1.42e-04	200	59	4	bad32a95b759fad509401b07bc96a56687c2a592
ToppCell	Brain_organoid-organoid_Tanaka_cellReport-2m-Neuronal\|2m / Sample Type, Dataset, Time_group, and Cell type.	DPF1 ZNF821 STXBP1 PCLO	1.42e-04	200	59	4	60b86c4a4e247b2673d31b085b440a6e574393bb
ToppCell	Neuronal\|World / cells hierarchy compared to all cells using T-Statistic	FRY STXBP1 PCLO ABLIM2	1.42e-04	200	59	4	48d801219bc771d6c7e151dc88ca4c179988de85
ToppCell	Brain_organoid-organoid_Tanaka_cellReport-3m-OPC_related\|3m / Sample Type, Dataset, Time_group, and Cell type.	SOX2 MAGI1 NFIA RPS9	1.42e-04	200	59	4	3dcaeb9f1e387784c299bfe0da1516598f82edf5
ToppCell	Fetal_brain-organoid_Tanaka_cellReport-GW10-Macroglial-Astrocyte\|GW10 / Sample Type, Dataset, Time_group, and Cell type.	FANCC SOX1 SOX2 ARX	1.42e-04	200	59	4	98a994692440cb4f505b050276f0c8022c814a21
ToppCell	Calu_3-uninfected\|Calu_3 / Cell line, Condition and Strain	RPL27 RPS9 CDC20 NUDC	1.42e-04	200	59	4	cb9b6a6b085ae0e19b450940c4ecd92406d8a2b3
ToppCell	Brain_organoid-organoid_Tanaka_cellReport-5w-Macroglial\|5w / Sample Type, Dataset, Time_group, and Cell type.	SOX2 RPL27 NOP53 RPS9	1.42e-04	200	59	4	b09cc353461f2d6b943ecc24db611679378bad2b
ToppCell	LPS_anti-TNF-Endothelial-Endothelial-Activated_Gen_Cap\|LPS_anti-TNF / Treatment groups by lineage, cell group, cell type	STXBP1 ATF3 APOL2 SEC14L1	1.42e-04	200	59	4	f15fffefe372005c33e31845982e2d2714ac26af
ToppCell	Fetal_brain-organoid_Tanaka_cellReport-GW10-Macroglial\|GW10 / Sample Type, Dataset, Time_group, and Cell type.	FANCC SOX1 SOX2 ARX	1.42e-04	200	59	4	ef222dc4a205d670172dae74990bdb952ac92e5b
ToppCell	Brain_organoid-organoid_Tanaka_cellReport-2m-Neuronal-Intermediate\|2m / Sample Type, Dataset, Time_group, and Cell type.	SOX2 FRY NFIA BAZ1B	1.42e-04	200	59	4	2a635694844ddabcd98462c5636a6f41a3f08a46
ToppCell	H1299\|World / Cell line, Condition and Strain	BAZ1B CDC20 NUDC DNMT1	1.42e-04	200	59	4	23f08d7cffacfced48785cd3ad230ecadb95713f
ToppCell	Fetal_brain-organoid_Tanaka_cellReport-GW13-Mesenchymal\|GW13 / Sample Type, Dataset, Time_group, and Cell type.	AXIN1 SEC14L1 SEMA4C	1.96e-04	85	59	3	3f33e897eb030043905a6a1a83377cd601652958
ToppCell	(05)_Ciliated-(3)_72hpi\|(05)_Ciliated / shred by cell type and Timepoint	TOMM20L CDC20 DNAH8	4.53e-04	113	59	3	eaa5bc8f8183b353ee1e7618e99220eb3684cd60
ToppCell	RA-12._Cytoplasmic_Cardiomyocyte_II\|RA / Chamber and Cluster_Paper	RPL27 RRAGA RPS9	6.81e-04	130	59	3	314da0b9f24473e1f4e51e884c1768f23a95ba79
ToppCell	RA-12._Cytoplasmic_Cardiomyocyte_II\|World / Chamber and Cluster_Paper	RPL27 RRAGA RPS9	7.43e-04	134	59	3	88795b2079c0909308ec4bf7eafd3e01f5cdd8da
ToppCell	NS-control-d_0-4-Epithelial-Ciliated-diff\|d_0-4 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)	ERICH3 IK NUDC	8.79e-04	142	59	3	1e57c75e9f28aae2ca99543448433fa7326398ad
ToppCell	Posterior_cortex-Neuronal-Excitatory-eN1(Slc17a7)-eN1_1\|Posterior_cortex / BrainAtlas - Mouse McCarroll V32	CDH7 SEC14L1 SORL1	8.97e-04	143	59	3	5fb5a4ea93e5cce55d427e3b4a50a979504fad3c
ToppCell	Myeloid-Myeloid-C_(Monocyte)\|Myeloid / shred on cell class and cell subclass (v4)	RPL27 NOP53 ATF3	9.72e-04	147	59	3	d7cfec8ec1b4854d783a1bb07b4f8d2b2fd22893
ToppCell	343B-Lymphocytic-CD4_T-cell-CD4+_Naive_T_cell_/_CD4+_Trm_cell\|CD4_T-cell / Donor, Lineage, Cell class and subclass (all cells)	RPL27 NOP53 RPS9	9.72e-04	147	59	3	d655e6ede8bca65a62efada2b15c7916e5f19324
ToppCell	Ciliated_cells-A-IPF_02\|World / lung cells shred on cell class, cell subclass, sample id	DPF1 SOX2 ERICH3	1.05e-03	151	59	3	9d03ce73af15ef40c592d19b36aff46bebc14c40
ToppCell	Smart-seq2-lymph_node_(Smart-seq2)-lymphocytic-T_lymphocytic-naive_thymus-derived_CD4-positive,_alpha-beta_T_cell\|lymph_node_(Smart-seq2) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type	RPL27 RPS9 IK	1.11e-03	154	59	3	561d4d0481e47cf0dc86b09fba2b8f2b128377c9
Disease	early infantile epileptic encephalopathy (implicated_via_orthology)	STXBP1 ARX	1.99e-04	11	57	2	DOID:0050709 (implicated_via_orthology)
Disease	Bipolar Disorder	MAGI1 NFIX PCLO DNAH8 CDH7 DNMT1	3.12e-04	477	57	6	C0005586
Disease	Early infantile epileptic encephalopathy with suppression bursts	STXBP1 ARX	4.32e-04	16	57	2	C0393706
Disease	platelet crit	DPF1 NFIA NFIX MAD1L1 ABCC5 ZNF318 NUDC SORL1	4.64e-04	952	57	8	EFO_0007985
Disease	Adenocarcinoma of prostate	MAD1L1 AXIN1	6.81e-04	20	57	2	C0007112
Disease	West Syndrome	STXBP1 ARX	9.85e-04	24	57	2	C0037769
Disease	lissencephaly (implicated_via_orthology)	ARX NUDC	1.25e-03	27	57	2	DOID:0050453 (implicated_via_orthology)
Disease	coffee consumption	BAZ1B CXXC1	1.75e-03	32	57	2	EFO_0004330

Protein segments in the cluster

Peptide	Gene	Start	Entry
RAKSRSLERKRREPE	PRPF4B	391	Q13523
PKELDLARERRKAER	ERICH3	1051	Q5RHP9
PRLKRELEDHIRKLR	APOL2	86	Q9BQE5
RCFELDPARRREREK	CDC20	471	Q12834
DPARRREREKASAAK	CDC20	476	Q12834
PDDVRRRLKDLERDS	DNMT1	21	P26358
DRERFIDKKERLSRL	ATG14	71	Q6ZNE5
RRKRKKFPDRLAEDE	BAZ1B	1451	Q9UIG0
EDLEDDIPRRKNRAK	DPF1	156	Q92782
PDEKRRKFLERNRAA	ATF2	351	P15336
RVKLPKDVDRTRLER	ABLIM2	561	Q6H8Q1
SPEDDDRKVRRREKN	BATF3	31	Q9NR55
SRPVDRAKRRKLREE	CECR2	386	Q9BXF3
LAKLRKDIRPEYRED	NFIA	76	Q12857
LAKLRKDIRPEFRED	NFIX	76	Q14938
REAEADKPRRLGRLK	NOP53	396	Q9NZM5
RLPRLERELKQLREE	MAD1L1	251	Q9Y6D9
LERREKHEKRRDVSP	MAGI1	1366	Q96QZ7
ISKFRRKDREDSPER	CLINT1	216	Q14677
KDEKRKLERERPLSL	SLC2A4	261	P14672
LPARDKRALKQFEER	LMBRD1	261	Q9NUN5
LERRPEYLEERRIKE	HSP90AA5P	21	Q58FG0
KDELRAQRRRERPKT	PCLO	1811	Q9Y6V0
LKKLSRPIRDLDDVR	DNAH8	1106	Q96JB1
RAIEDEKRELAKLRR	ODF1	96	Q14990
RDREDSKFRRTRPLE	ABCC5	31	O15440
RECREKDPKLEIRYR	CXXC1	71	Q9P0U4
EIYPIKKREDRRRLA	CASP5	181	P51878
DLCESEVLPKRRRRK	ANKZF1	426	Q9H8Y5
RRRLEEEEKRASRAP	AXIN1	711	O15169
PRSEKLARELLKELR	FANCC	541	Q00597
PLLEQKELRDRRAEL	GCC2	911	Q8IWJ2
VAPEEDERKKRRRER	ATF3	81	P18847
EEDIRRAREARPRKT	COQ8B	56	Q96D53
LLEDDARALLKEPRR	ARX	251	Q96QS3
QRKREAEERRRFPLE	CLPB	326	Q9H078
AEERRRFPLEQRLKE	CLPB	331	Q9H078
EALERRPENKKRRER	FRY	1011	Q5TBA9
RPENKKRRERRDLLR	FRY	1016	Q5TBA9
RRRKKEPLIFDEERD	CDH7	631	Q9ULB5
FRDPALKRKARREAK	RPL27	101	P61353
ERRCKLDVDAPRLLK	SEC14L1	56	Q92503
DRSPRDRDRKDKKRS	LUC7L2	356	Q9Y383
RAVDKERRVRFLLEP	GRIN3B	926	O60391
AARELLTLDEKDPRR	RPS9	56	P46781
EKRPFIDEAKRLRAL	SOX2	86	P48431
RADEKPLRRKRSAAL	SORL1	71	Q92673
RRPRKDRKLDRRLDV	RSPO4	211	Q2I0M5
LRRRLREELEKGAKA	SEMA4C	686	Q9C0C4
EKRPFIDEAKRLRAL	SOX1	96	O00570
LRRRSKPERKERISE	STXBP1	456	P61764
RREKAERAARLAKEA	NUDC	81	Q9Y266
RRSDKRKDRVEISPE	BRCC3	81	P46736
ERRELARRKDKEAIL	SEMA6B	626	Q9H3T3
KRDSLRKRSVRDLEP	SPEN	1361	Q96T58
PEERRARLRKREAQL	MRPL55	86	Q7Z7F7
FKEREEDLRRLSRPL	RRAGA	141	Q7L523
IFKEREEDLRRLSRP	RRAGB	201	Q5VZM2
KTPRDKERERYRERE	IK	331	Q13123
AEPSERRVKREKRDD	SART1	86	O43290
DPAFKRRLRDKRRAE	TOMM20L	36	Q6UXN7
RRLRDKRRAEPQKAE	TOMM20L	41	Q6UXN7
PEKRQARLIREREAK	ZNF821	336	O75541
LDPEFRELDLARRKR	ZNF318	311	Q5VUA4