Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyMolecularFunction	extracellular matrix structural constituent conferring tensile strength	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1	1.07e-11	46	46	7	GO:0030020
GeneOntologyMolecularFunction	extracellular matrix structural constituent	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1 LAMA1	1.02e-08	188	46	8	GO:0005201
GeneOntologyMolecularFunction	structural molecule activity	SHANK1 COL23A1 COL4A3 MACF1 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1 LAMA1	2.81e-05	891	46	10	GO:0005198
GeneOntologyBiologicalProcess	extracellular matrix organization	COL23A1 COL4A3 COL24A1 MANSC4 COL9A2 COL28A1 LAMA1	1.38e-05	377	44	7	GO:0030198
GeneOntologyBiologicalProcess	extracellular structure organization	COL23A1 COL4A3 COL24A1 MANSC4 COL9A2 COL28A1 LAMA1	1.40e-05	378	44	7	GO:0043062
GeneOntologyBiologicalProcess	external encapsulating structure organization	COL23A1 COL4A3 COL24A1 MANSC4 COL9A2 COL28A1 LAMA1	1.43e-05	379	44	7	GO:0045229
GeneOntologyBiologicalProcess	regulation of organelle organization	SHANK1 TMOD2 PRDM9 STOX1 MAP6 EML3 TOP2A PPFIA1 G3BP2 HNRNPU KNL1	8.85e-05	1342	44	11	GO:0033043
GeneOntologyBiologicalProcess	regulation of meiosis I	PRDM9 KNL1	1.59e-04	9	44	2	GO:0060631
GeneOntologyCellularComponent	collagen trimer	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1	1.01e-09	88	47	7	GO:0005581
GeneOntologyCellularComponent	collagen-containing extracellular matrix	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 GPC5 COL21A1 COL28A1 LAMA1	2.34e-06	530	47	9	GO:0062023
GeneOntologyCellularComponent	extracellular matrix	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 GPC5 COL21A1 COL28A1 LAMA1	1.31e-05	656	47	9	GO:0031012
GeneOntologyCellularComponent	external encapsulating structure	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 GPC5 COL21A1 COL28A1 LAMA1	1.34e-05	658	47	9	GO:0030312
GeneOntologyCellularComponent	endoplasmic reticulum lumen	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1 COL28A1	9.52e-05	332	47	6	GO:0005788
GeneOntologyCellularComponent	basement membrane	COL23A1 COL4A3 COL28A1 LAMA1	1.62e-04	122	47	4	GO:0005604
GeneOntologyCellularComponent	cytoplasmic ribonucleoprotein granule	LSM4 SSB G3BP2 YTHDF3 HNRNPU	3.35e-04	269	47	5	GO:0036464
GeneOntologyCellularComponent	mitotic spindle microtubule	EML3 HNRNPU	4.43e-04	14	47	2	GO:1990498
GeneOntologyCellularComponent	ribonucleoprotein granule	LSM4 SSB G3BP2 YTHDF3 HNRNPU	4.51e-04	287	47	5	GO:0035770
GeneOntologyCellularComponent	complex of collagen trimers	COL4A3 COL28A1	1.01e-03	21	47	2	GO:0098644
GeneOntologyCellularComponent	cytoplasmic stress granule	SSB G3BP2 YTHDF3	1.31e-03	96	47	3	GO:0010494
GeneOntologyCellularComponent	spliceosomal complex	SUGP1 LSM4 MTREX HNRNPU	1.37e-03	215	47	4	GO:0005681
HumanPheno	Head titubation	KARS1 LAMA1 VPS13A	3.67e-05	25	14	3	HP:0002599
Domain	Collagen	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1	1.46e-09	85	46	7	IPR008160
Domain	Collagen	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1	1.46e-09	85	46	7	PF01391
Domain	VWA	COL6A5 COL21A1 COL28A1	3.54e-04	56	46	3	PF00092
Domain	Laminin_G	COL24A1 COL21A1 LAMA1	3.92e-04	58	46	3	IPR001791
Domain	-	COL6A5 COL21A1 COL28A1	8.02e-04	74	46	3	3.40.50.410
Domain	VWFA	COL6A5 COL21A1 COL28A1	1.08e-03	82	46	3	PS50234
Domain	VWA	COL6A5 COL21A1 COL28A1	1.16e-03	84	46	3	SM00327
Domain	TSPN	COL24A1 COL21A1	1.45e-03	23	46	2	SM00210
Domain	-	COL24A1 COL21A1 LAMA1	1.65e-03	95	46	3	2.60.120.200
Domain	VWF_A	COL6A5 COL21A1 COL28A1	1.86e-03	99	46	3	IPR002035
Domain	ConA-like_dom	COL24A1 COL21A1 HNRNPU LAMA1	2.04e-03	219	46	4	IPR013320
Domain	LAM_G_DOMAIN	COL24A1 LAMA1	3.94e-03	38	46	2	PS50025
Domain	Laminin_G_2	COL24A1 LAMA1	4.36e-03	40	46	2	PF02210
Domain	SAM_1	SHANK1 PPFIA1	1.22e-02	68	46	2	PF00536
Pathway	REACTOME_COLLAGEN_CHAIN_TRIMERIZATION	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1	7.04e-12	44	33	7	M27812
Pathway	REACTOME_COLLAGEN_BIOSYNTHESIS_AND_MODIFYING_ENZYMES	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1	1.54e-10	67	33	7	M26999
Pathway	REACTOME_COLLAGEN_FORMATION	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1	1.27e-09	90	33	7	M631
Pathway	REACTOME_COLLAGEN_CHAIN_TRIMERIZATION	COL23A1 COL4A3 COL6A5 COL9A2 COL28A1	3.61e-08	41	33	5	MM15538
Pathway	REACTOME_COLLAGEN_BIOSYNTHESIS_AND_MODIFYING_ENZYMES	COL23A1 COL4A3 COL6A5 COL9A2 COL28A1	2.78e-07	61	33	5	MM14637
Pathway	REACTOME_EXTRACELLULAR_MATRIX_ORGANIZATION	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1 LAMA1	3.35e-07	300	33	8	M610
Pathway	REACTOME_COLLAGEN_FORMATION	COL23A1 COL4A3 COL6A5 COL9A2 COL28A1	8.41e-07	76	33	5	MM14573
Pathway	REACTOME_ASSEMBLY_OF_COLLAGEN_FIBRILS_AND_OTHER_MULTIMERIC_STRUCTURES	COL4A3 COL24A1 COL6A5 COL9A2	1.18e-05	61	33	4	M27103
Pathway	REACTOME_NCAM1_INTERACTIONS	COL4A3 COL6A5 COL9A2	1.30e-05	20	33	3	MM15061
Pathway	REACTOME_COLLAGEN_DEGRADATION	COL23A1 COL4A3 COL6A5 COL9A2	1.43e-05	64	33	4	M26953
Pathway	REACTOME_ECM_PROTEOGLYCANS	COL4A3 COL6A5 COL9A2 LAMA1	2.83e-05	76	33	4	M27219
Pathway	REACTOME_INTEGRIN_CELL_SURFACE_INTERACTIONS	COL23A1 COL4A3 COL6A5 COL9A2	4.41e-05	85	33	4	M16441
Pathway	REACTOME_NCAM_SIGNALING_FOR_NEURITE_OUT_GROWTH	COL4A3 COL6A5 COL9A2	9.32e-05	38	33	3	MM14969
Pathway	REACTOME_NCAM1_INTERACTIONS	COL4A3 COL6A5 COL9A2	1.26e-04	42	33	3	M7169
Pathway	REACTOME_ASSEMBLY_OF_COLLAGEN_FIBRILS_AND_OTHER_MULTIMERIC_STRUCTURES	COL4A3 COL6A5 COL9A2	2.13e-04	50	33	3	MM14796
Pathway	REACTOME_DEGRADATION_OF_THE_EXTRACELLULAR_MATRIX	COL23A1 COL4A3 COL6A5 COL9A2	3.05e-04	140	33	4	M587
Pathway	REACTOME_EXTRACELLULAR_MATRIX_ORGANIZATION	COL23A1 COL4A3 COL6A5 COL9A2 COL28A1	3.08e-04	258	33	5	MM14572
Pathway	REACTOME_SIGNALING_BY_PDGF	COL4A3 COL6A5 COL9A2	3.14e-04	57	33	3	MM14713
Pathway	REACTOME_SIGNALING_BY_PDGF	COL4A3 COL6A5 COL9A2	3.30e-04	58	33	3	M2049
Pathway	REACTOME_NCAM_SIGNALING_FOR_NEURITE_OUT_GROWTH	COL4A3 COL6A5 COL9A2	4.22e-04	63	33	3	M11187
Pathway	REACTOME_INTEGRIN_CELL_SURFACE_INTERACTIONS	COL4A3 COL6A5 COL9A2	7.31e-04	76	33	3	MM14867
Pathway	REACTOME_MRNA_SPLICING	SUGP1 LSM4 MTREX HNRNPU	1.19e-03	201	33	4	MM15411
Pathway	REACTOME_MRNA_SPLICING	SUGP1 LSM4 MTREX HNRNPU	1.45e-03	212	33	4	M14033
Pathway	REACTOME_MET_ACTIVATES_PTK2_SIGNALING	COL24A1 LAMA1	2.22e-03	30	33	2	M27772
Pathway	REACTOME_LAMININ_INTERACTIONS	COL4A3 LAMA1	2.22e-03	30	33	2	M27216
Pathway	WP_MRNA_PROCESSING	SUGP1 COL4A3 LSM4 SSB HNRNPU	3.71e-03	451	33	5	MM15946
Pathway	REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	SUGP1 LSM4 MTREX HNRNPU	3.81e-03	277	33	4	MM15414
Pathway	REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	SUGP1 LSM4 MTREX HNRNPU	4.11e-03	283	33	4	M13087
Pathway	REACTOME_MET_PROMOTES_CELL_MOTILITY	COL24A1 LAMA1	4.12e-03	41	33	2	M27778
Pubmed	KCTD13-mediated ubiquitination and degradation of GluN1 regulates excitatory synaptic transmission and seizure susceptibility.	SHANK1 TMOD2 MACF1 LSM4 SSB KARS1 RRBP1 MAP6 MORF4L2 PPFIA1 G3BP2 HNRNPU GKAP1	3.49e-08	1431	47	13	37142655
Pubmed	In silico APC/C substrate discovery reveals cell cycle-dependent degradation of UHRF1 and other chromatin regulators.	TCF25 LSM4 SSB MTREX RRBP1 MORF4L2 COL28A1 PPFIA1 G3BP2 YTHDF3 HNRNPU	5.28e-08	971	47	11	33306668
Pubmed	The E3 ubiquitin ligase HECTD1 contributes to cell proliferation through an effect on mitosis.	TCF25 MACF1 SSB KARS1 MTREX RRBP1 MORF4L2 TOP2A G3BP2 HNRNPU	5.77e-08	759	47	10	35915203
Pubmed	Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver.	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1 COL28A1	6.08e-08	153	47	6	25037231
Pubmed	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.	SUGP1 MACF1 LSM4 SSB RRBP1 TOP2A G3BP2 YTHDF3 PIN4 HNRNPU	1.02e-07	807	47	10	22681889
Pubmed	Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression.	COL4A3 COL24A1 COL6A5 COL9A2 COL28A1 LAMA1	1.35e-07	175	47	6	28071719
Pubmed	The HIV-1 Tat protein recruits a ubiquitin ligase to reorganize the 7SK snRNP for transcriptional activation.	THUMPD1 MACF1 LSM4 SSB KARS1 MTREX MORF4L2 G3BP2 YTHDF3 PIN4 HNRNPU	2.95e-07	1153	47	11	29845934
Pubmed	BPA modulates the WDR5/TET2 complex to regulate ERβ expression in eutopic endometrium and drives the development of endometriosis.	ABCC1 MACF1 LSM4 SSB KARS1 RRBP1 G3BP2 PIN4 HNRNPU	4.04e-07	711	47	9	33022573
Pubmed	Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics.	COL4A3 COL24A1 COL6A5 COL21A1 COL28A1	1.10e-06	135	47	5	28675934
Pubmed	WWP2 ubiquitylates RNA polymerase II for DNA-PK-dependent transcription arrest and repair at DNA breaks.	TSPYL5 KARS1 MTREX RRBP1 TOP2A G3BP2 YTHDF3 HNRNPU	1.57e-06	615	47	8	31048545
Pubmed	Multidrug resistance protein and topoisomerase 2 alpha expression in non-small cell lung cancer are related with brain metastasis postoperatively.	ABCC1 TOP2A	1.79e-06	2	47	2	26617887
Pubmed	Assembly of the U5 snRNP component PRPF8 is controlled by the HSP90/R2TP chaperones.	MACF1 LSM4 SSB KARS1 MTREX RRBP1 MORF4L2 TOP2A G3BP2 YTHDF3 HNRNPU	2.20e-06	1415	47	11	28515276
Pubmed	Global landscape of HIV-human protein complexes.	THUMPD1 SSB KARS1 EML3 TOP2A G3BP2 YTHDF3	2.58e-06	457	47	7	22190034
Pubmed	High-sensitivity profiling of SARS-CoV-2 noncoding region-host protein interactome reveals the potential regulatory role of negative-sense viral RNA.	SUGP1 THUMPD1 SSB KARS1 MTREX TOP2A HNRNPU	3.06e-06	469	47	7	37314180
Pubmed	The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices.	COL23A1 COL24A1 COL6A5 COL28A1 LAMA1	3.13e-06	167	47	5	22159717
Pubmed	STING-Mediated IFI16 Degradation Negatively Controls Type I Interferon Production.	SSB KARS1 MTREX MORF4L2 G3BP2 HNRNPU	4.21e-06	316	47	6	31665637
Pubmed	Significance of multidrug resistance gene-related proteins in the postoperative chemotherapy of gastric cancer.	ABCC1 TOP2A	5.36e-06	3	47	2	25550836
Pubmed	Novel splice variants of ING4 and their possible roles in the regulation of cell growth and motility.	PPFIA1 G3BP2	5.36e-06	3	47	2	16973615
Pubmed	TRIM65 regulates microRNA activity by ubiquitination of TNRC6.	TCF25 SSB MTREX TOP2A PPFIA1 G3BP2	9.43e-06	364	47	6	24778252
Pubmed	Prognostic significance of abnormal matrix collagen remodeling in colorectal cancer based on histologic and bioinformatics analysis.	COL4A3 COL21A1	1.07e-05	4	47	2	32945508
Pubmed	Laminin compensation in collagen alpha3(IV) knockout (Alport) glomeruli contributes to permeability defects.	COL4A3 LAMA1	1.07e-05	4	47	2	17699809
Pubmed	Laminin-1 reexpression in Alport mouse glomerular basement membranes.	COL4A3 LAMA1	1.07e-05	4	47	2	12631063
Pubmed	Direct interaction between hnRNP-M and CDC5L/PLRG1 proteins affects alternative splice site choice.	MACF1 MTREX TOP2A PPFIA1 G3BP2 HNRNPU KNL1	1.25e-05	582	47	7	20467437
Pubmed	Global analysis of TDP-43 interacting proteins reveals strong association with RNA splicing and translation machinery.	SSB MTREX RRBP1 G3BP2 HNRNPU	1.28e-05	223	47	5	20020773
Pubmed	PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα.	SUGP1 SSB KARS1 MTREX TOP2A G3BP2 PIN4 HNRNPU KNL1	1.45e-05	1103	47	9	34189442
Pubmed	METTL3 protects METTL14 from STUB1-mediated degradation to maintain m6 A homeostasis.	SSB MTREX TOP2A G3BP2 YTHDF3	1.51e-05	231	47	5	36597993
Pubmed	USP7 targets XIAP for cancer progression: Establishment of a p53-independent therapeutic avenue for glioma.	MACF1 MTREX TOP2A PPFIA1 LAMA1	1.61e-05	234	47	5	36243803
Pubmed	N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective.	SUGP1 MACF1 FAM193B KARS1 RRBP1 TOP2A HNRNPU KNL1	3.26e-05	934	47	8	33916271
Pubmed	PTPN14 regulates Roquin2 stability by tyrosine dephosphorylation.	TCF25 MTREX MORF4L2 G3BP2 YTHDF3 HNRNPU KNL1	3.31e-05	678	47	7	30209976
Pubmed	New roles for the de-ubiquitylating enzyme OTUD4 in an RNA-protein network and RNA granules.	SHANK1 KARS1 RRBP1 G3BP2 YTHDF3 HNRNPU	3.60e-05	462	47	6	31138677
Pubmed	Nidogen-1. Expression and ultrastructural localization during the onset of mesoderm formation in the early mouse embryo.	COL4A3 LAMA1	3.74e-05	7	47	2	10639489
Pubmed	A Noncanonical Role of Fructose-1, 6-Bisphosphatase 1 Is Essential for Inhibition of Notch1 in Breast Cancer.	LSM4 KARS1 RRBP1 TOP2A HNRNPU	4.20e-05	286	47	5	32041737
Pubmed	RNA-binding proteins with basic-acidic dipeptide (BAD) domains self-assemble and aggregate in Alzheimer's disease.	LSM4 SSB MTREX TOP2A G3BP2 YTHDF3 HNRNPU	4.56e-05	713	47	7	29802200
Pubmed	Prohibitin 1 regulates tumor cell apoptosis via the interaction with X-linked inhibitor of apoptosis protein.	SSB KARS1 RRBP1 MORF4L2 G3BP2 YTHDF3 HNRNPU	5.06e-05	725	47	7	27025967
Pubmed	Fibril treatment changes protein interactions of tau and α-synuclein in human neurons.	TMOD2 MACF1 LSM4 SSB TOP2A HNRNPU	5.46e-05	498	47	6	36634849
Pubmed	E3 ubiquitin ligase RNF123 targets lamin B1 and lamin-binding proteins.	KARS1 STOX1 POTEA COL28A1 HNRNPU LAMA1 VPS13A	5.57e-05	736	47	7	29676528
Pubmed	Developmental changes in seminiferous tubule extracellular matrix components of the mouse testis: alpha 3(IV) collagen chain expressed at the initiation of spermatogenesis.	COL4A3 LAMA1	6.40e-05	9	47	2	8562707
Pubmed	Gelatinase B (MMP-9) is not essential in the normal kidney and does not influence progression of renal disease in a mouse model of Alport syndrome.	COL4A3 LAMA1	6.40e-05	9	47	2	10880400
Pubmed	Characterization of high affinity binding between laminin and the acute-phase protein, serum amyloid A.	COL4A3 LAMA1	6.40e-05	9	47	2	8995276
Pubmed	Cell cycle-dependent phosphorylation regulates RECQL4 pathway choice and ubiquitination in DNA double-strand break repair.	TCF25 LSM4 SSB KARS1 MTREX RRBP1 MORF4L2 G3BP2 HNRNPU	6.43e-05	1335	47	9	29229926
Pubmed	The USP10-HDAC6 axis confers cisplatin resistance in non-small cell lung cancer lacking wild-type p53.	KARS1 G3BP2 HNRNPU	7.13e-05	59	47	3	32382008
Pubmed	Interaction between Alzheimer's disease beta A4 precursor protein (APP) and the extracellular matrix: evidence for the participation of heparan sulfate proteoglycans.	COL4A3 LAMA1	7.99e-05	10	47	2	9136074
Pubmed	Distribution of fibronectin, type I collagen, type IV collagen, and laminin in the cardiac jelly of the mouse embryonic heart with retinoic acid-induced complete transposition of the great arteries.	COL4A3 LAMA1	7.99e-05	10	47	2	9415455
Pubmed	MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons.	SUGP1 MACF1 TSPYL5 KARS1 MAP6 MORF4L2 PIN4 HNRNPU	9.15e-05	1082	47	8	38697112
Pubmed	PRP19 transforms into a sensor of RPA-ssDNA after DNA damage and drives ATR activation via a ubiquitin-mediated circuitry.	MTREX MORF4L2 TOP2A YTHDF3 HNRNPU	9.50e-05	340	47	5	24332808
Pubmed	Arginine methylation and ubiquitylation crosstalk controls DNA end-resection and homologous recombination repair.	SSB KARS1 MTREX RRBP1 G3BP2 HNRNPU	9.52e-05	551	47	6	34728620
Pubmed	Collagen IV is essential for basement membrane stability but dispensable for initiation of its assembly during early development.	COL4A3 LAMA1	9.75e-05	11	47	2	14998921
Pubmed	A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain.	COL4A3 THUMPD1 LSM4 SSB G3BP2	1.04e-04	347	47	5	16033648
Pubmed	Basement membrane fragility underlies embryonic lethality in fukutin-null mice.	COL4A3 LAMA1	1.17e-04	12	47	2	15837576
Pubmed	Matrilin-2 interacts with itself and with other extracellular matrix proteins.	COL4A3 LAMA1	1.17e-04	12	47	2	12180907
Pubmed	Low BACH2 Expression Predicts Adverse Outcome in Chronic Lymphocytic Leukaemia.	SSB KARS1 RRBP1	1.19e-04	70	47	3	35008187
Pubmed	Neuron-specific protein network mapping of autism risk genes identifies shared biological mechanisms and disease-relevant pathologies.	SHANK1 TCF25 MACF1 FRMPD4 RRBP1 MAP6 G3BP2 HNRNPU	1.30e-04	1139	47	8	36417873
Pubmed	Basal lamina molecules are concentrated in myogenic regions of the mouse limb bud.	COL4A3 LAMA1	1.38e-04	13	47	2	9833687
Pubmed	Mesangial cells organize the glomerular capillaries by adhering to the G domain of laminin alpha5 in the glomerular basement membrane.	COL4A3 LAMA1	1.38e-04	13	47	2	12682087
Pubmed	Systematic analysis of human protein complexes identifies chromosome segregation proteins.	LSM4 SSB GPC5 RRBP1 EML3 TOP2A HNRNPU KNL1	1.44e-04	1155	47	8	20360068
Pubmed	The protein network surrounding the human telomere repeat binding factors TRF1, TRF2, and POT1.	MACF1 MTREX G3BP2 YTHDF3	1.47e-04	197	47	4	20811636
Pubmed	Interactomes of Glycogen Synthase Kinase-3 Isoforms.	MACF1 FAM193B RRBP1 PPFIA1	1.85e-04	209	47	4	36779422
Pubmed	Defective glomerulogenesis in the absence of laminin alpha5 demonstrates a developmental role for the kidney glomerular basement membrane.	COL4A3 LAMA1	1.86e-04	15	47	2	10625553
Pubmed	Localization of basement membrane-associated protein isoforms during development of the ocular surface of mouse eye.	COL4A3 LAMA1	1.86e-04	15	47	2	9264260
Pubmed	Nell1-deficient mice have reduced expression of extracellular matrix proteins causing cranial and vertebral defects.	COL23A1 COL4A3 COL9A2 LAMA1	1.88e-04	210	47	4	16537572
Pubmed	A protein interaction landscape of breast cancer.	ABCC1 MACF1 TSPYL5 MTREX RRBP1 TOP2A	2.04e-04	634	47	6	34591612
Pubmed	High Throughput Chemical Screening Reveals Multiple Regulatory Proteins on FOXA1 in Breast Cancer Cell Lines.	TCF25 LSM4 TSPYL5 YTHDF3	2.36e-04	223	47	4	30572598
Pubmed	SMYD3 Impedes Small Cell Lung Cancer Sensitivity to Alkylation Damage through RNF113A Methylation-Phosphorylation Cross-talk.	TSPYL5 SSB KARS1 RRBP1 G3BP2 HNRNPU	2.43e-04	655	47	6	35819319
Pubmed	TBK1 phosphorylation activates LIR-dependent degradation of the inflammation repressor TNIP1.	TCF25 KARS1 FRMPD4 RRBP1 TOP2A G3BP2 HNRNPU	2.67e-04	949	47	7	36574265
Pubmed	TRIM28-mediated nucleocapsid protein SUMOylation enhances SARS-CoV-2 virulence.	SSB TOP2A G3BP2 HNRNPU VPS13A	2.82e-04	430	47	5	38172120
Pubmed	H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.	ABCC1 LSM4 KARS1 MTREX RRBP1 MORF4L2 TOP2A HNRNPU	3.10e-04	1294	47	8	30804502
Pubmed	Reciprocal interaction between SIRT6 and APC/C regulates genomic stability.	SSB MTREX RRBP1 TOP2A G3BP2	3.14e-04	440	47	5	34244565
Pubmed	SARS-CoV-2 N Protein Antagonizes Stress Granule Assembly and IFN Production by Interacting with G3BPs to Facilitate Viral Replication.	KARS1 G3BP2 YTHDF3 HNRNPU	3.38e-04	245	47	4	35652658
Pubmed	MYC multimers shield stalled replication forks from RNA polymerase.	SUGP1 TSPYL5 KARS1 MTREX TOP2A HNRNPU KNL1	3.43e-04	989	47	7	36424410
Pubmed	CHFR regulates chemoresistance in triple-negative breast cancer through destabilizing ZEB1.	SSB G3BP2 HNRNPU	3.51e-04	101	47	3	34462429
Pubmed	KAP1 facilitates reinstatement of heterochromatin after DNA replication.	THUMPD1 KARS1 MTREX TOP2A G3BP2 HNRNPU	3.57e-04	704	47	6	29955894
Pubmed	Anticancer sulfonamides target splicing by inducing RBM39 degradation via recruitment to DCAF15.	TMOD2 SSB MTREX TOP2A G3BP2 HNRNPU	3.85e-04	714	47	6	28302793
Pubmed	Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.	SSB G3BP2 HNRNPU	3.94e-04	105	47	3	22505724
Pubmed	Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins.	SUGP1 TCF25 LSM4 G3BP2 YTHDF3 HNRNPU	4.11e-04	723	47	6	34133714
Pubmed	A Degradation Motif in STAU1 Defines a Novel Family of Proteins Involved in Inflammation.	MACF1 RRBP1 PPFIA1 G3BP2 YTHDF3 GKAP1	4.14e-04	724	47	6	36232890
Pubmed	Characterizing ZC3H18, a Multi-domain Protein at the Interface of RNA Production and Destruction Decisions.	LSM4 SSB KARS1 MTREX TOP2A HNRNPU	4.36e-04	731	47	6	29298432
Pubmed	An antibody-based proximity labeling map reveals mechanisms of SARS-CoV-2 inhibition of antiviral immunity.	SUGP1 ABCC1 RRBP1 PPFIA1 YTHDF3 KNL1	4.42e-04	733	47	6	34672954
Pubmed	Proteome-wide identification of HSP70/HSC70 chaperone clients in human cells.	THUMPD1 TSPYL5 SSB KARS1 TOP2A G3BP2 HNRNPU KNL1	4.48e-04	1367	47	8	32687490
Pubmed	Decreased Anxiety-Related Behaviour but Apparently Unperturbed NUMB Function in Ligand of NUMB Protein-X (LNX) 1/2 Double Knockout Mice.	RRBP1 EML3 PPFIA1	4.51e-04	110	47	3	27889896
Pubmed	HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation.	SSB KARS1 MTREX RRBP1 PPFIA1 G3BP2 YTHDF3 PIN4	4.56e-04	1371	47	8	36244648
Pubmed	mTORC1 activity regulates post-translational modifications of glycine decarboxylase to modulate glycine metabolism and tumorigenesis.	MTREX RRBP1 G3BP2 HNRNPU	5.15e-04	274	47	4	34244482
Pubmed	Impaired plasma membrane localization of ubiquitin ligase complex underlies 3-M syndrome development.	TCF25 MACF1 MTREX TOP2A G3BP2	5.41e-04	496	47	5	31343991
Pubmed	Synaptic GAP and GEF Complexes Cluster Proteins Essential for GTP Signaling.	SHANK1 MACF1 MAP6 PPFIA1	5.66e-04	281	47	4	28706196
Pubmed	Cannabinoid inhibits HIV-1 Tat-stimulated adhesion of human monocyte-like cells to extracellular matrix proteins.	COL4A3 LAMA1	5.69e-04	26	47	2	24742657
Pubmed	Host determinants of HIV-1 control in African Americans.	ZNF385D GPC5	5.69e-04	26	47	2	20205591
Pubmed	The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells.	MACF1 SSB MTREX KNL1	5.74e-04	282	47	4	23667531
Pubmed	Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.	SSB G3BP2 HNRNPU	6.40e-04	124	47	3	23000965
Pubmed	Interaction between host G3BP and viral nucleocapsid protein regulates SARS-CoV-2 replication and pathogenicity.	G3BP2 HNRNPU	6.61e-04	28	47	2	38492217
Pubmed	Proteomics analysis of nucleolar SUMO-1 target proteins upon proteasome inhibition.	TOP2A HNRNPU	6.61e-04	28	47	2	19596686
Pubmed	Wnt regulation: exploring Axin-Disheveled interactions and defining mechanisms by which the SCF E3 ubiquitin ligase is recruited to the destruction complex.	THUMPD1 SSB KARS1 RRBP1 G3BP2 HNRNPU	7.41e-04	809	47	6	32129710
Pubmed	SARS-CoV-2 nucleocapsid protein interacts with immunoregulators and stress granules and phase separates to form liquid droplets.	G3BP2 YTHDF3	7.59e-04	30	47	2	34780058
Pubmed	Autophagy negatively regulates cancer cell proliferation via selectively targeting VPRBP.	RRBP1 HNRNPU	7.59e-04	30	47	2	22963397
Pubmed	Identifying and quantifying in vivo methylation sites by heavy methyl SILAC.	G3BP2 HNRNPU	7.59e-04	30	47	2	15782174
Pubmed	A COFRADIC protocol to study protein ubiquitination.	SSB G3BP2 HNRNPU	8.01e-04	134	47	3	24816145
Pubmed	D-2-hydroxyglutarate produced by mutant IDH1 perturbs collagen maturation and basement membrane function.	COL4A3 LAMA1	8.11e-04	31	47	2	22925884
Pubmed	BTB-ZF factors recruit the E3 ligase cullin 3 to regulate lymphoid effector programs.	TOP2A HNRNPU	8.11e-04	31	47	2	23086144
Pubmed	Large-scale analysis of the human ubiquitin-related proteome.	SSB G3BP2 HNRNPU LAMA1	8.46e-04	313	47	4	16196087
Pubmed	SPATA2 Links CYLD to LUBAC, Activates CYLD, and Controls LUBAC Signaling.	COL6A5 SSB KARS1 G3BP2 HNRNPU	9.19e-04	558	47	5	27591049
Pubmed	Combinatorial targeting of a chromatin complex comprising Dot1L, menin and the tyrosine kinase BAZ1B reveals a new therapeutic vulnerability of endocrine therapy-resistant breast cancer.	SSB MTREX TOP2A G3BP2 YTHDF3 HNRNPU	9.40e-04	847	47	6	35850772
Pubmed	Assessment of a polymorphism of SDK1 with hypertension in Japanese Individuals.	COL23A1 TCF25 ABCC1	9.47e-04	142	47	3	19851296
Interaction	KCTD13 interactions	SHANK1 TMOD2 MACF1 LSM4 SSB KARS1 RRBP1 MAP6 MORF4L2 PPFIA1 G3BP2 HNRNPU GKAP1	9.25e-06	1394	46	13	int:KCTD13
Interaction	MEPCE interactions	THUMPD1 MACF1 LSM4 TSPYL5 SSB MTREX G3BP2 YTHDF3 PIN4 HNRNPU	1.89e-05	859	46	10	int:MEPCE
Interaction	SLC44A4 interactions	RRBP1 HNRNPU	3.05e-05	4	46	2	int:SLC44A4
Interaction	FZR1 interactions	TCF25 LSM4 SSB MTREX RRBP1 MORF4L2 COL28A1 PPFIA1 G3BP2 YTHDF3 HNRNPU	4.97e-05	1172	46	11	int:FZR1
Interaction	HECTD1 interactions	TCF25 MACF1 SSB KARS1 MTREX RRBP1 MORF4L2 TOP2A G3BP2 HNRNPU	6.02e-05	984	46	10	int:HECTD1
Cytoband	19p13.11	SUGP1 LSM4	2.57e-03	73	47	2	19p13.11
Cytoband	5q35.3	COL23A1 FAM193B	4.31e-03	95	47	2	5q35.3
GeneFamily	Collagens	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1	1.37e-12	46	32	7	490
GeneFamily	Sterile alpha motif domain containing	SHANK1 PPFIA1	1.06e-02	88	32	2	760
Coexpression	NABA_COLLAGENS	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1	1.36e-12	44	47	7	M3005
Coexpression	NABA_COLLAGENS	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL28A1	1.38e-10	43	47	6	MM17060
Coexpression	NABA_CORE_MATRISOME	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL21A1 COL28A1 LAMA1	2.93e-08	275	47	8	M5884
Coexpression	NABA_CORE_MATRISOME	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 COL28A1 LAMA1	5.04e-07	270	47	7	MM17057
Coexpression	GSE360_T_GONDII_VS_B_MALAYI_LOW_DOSE_MAC_UP	SUGP1 LSM4 SP3 MORF4L2 EML3	2.64e-05	196	47	5	M5256
Coexpression	RICKMAN_HEAD_AND_NECK_CANCER_A	TSPYL5 COL9A2 PPFIA1 LAMA1	3.80e-05	105	47	4	M14228
Coexpression	NABA_BASEMENT_MEMBRANES	COL4A3 COL6A5 LAMA1	5.10e-05	40	47	3	M5887
Coexpression	NABA_MATRISOME	COL23A1 COL4A3 COL24A1 COL6A5 COL9A2 GPC5 COL21A1 COL28A1 LAMA1	7.43e-05	1026	47	9	M5889
Coexpression	DACOSTA_UV_RESPONSE_VIA_ERCC3_DN	ABCC1 MACF1 SP3 MTREX TOP2A PPFIA1 YTHDF3 VPS13A	1.27e-04	856	47	8	M4500
ToppCell	3'_v3-Lung-Lymphocytic_Invariant-Inducer-like-ILC3\|Lung / Manually curated celltypes from each tissue	SHANK1 COL23A1 COL24A1 COL9A2 COL21A1	8.97e-07	167	47	5	0614d077b47a87f726068615548d0b0a216627be
ToppCell	LPS_only-Mesenchymal_fibroblastic-Fibroblasts-MatrixFB\|LPS_only / Treatment groups by lineage, cell group, cell type	MACF1 COL6A5 RRBP1 COL21A1 LAMA1	2.18e-06	200	47	5	a7ef7022b8efcaedb7319b0b43d8c4e99d788fe2
ToppCell	(05)_Ciliated-(2)_48hpi\|(05)_Ciliated / shred by cell type and Timepoint	COL4A3 MANSC4 COL6A5 MAP6	8.94e-06	124	47	4	fc8cce8c1809edafbc4e69e501dd4f016f5dfc0b
ToppCell	Substantia_nigra-Endothelial-ENDOTHELIAL_TIP-Dcn_2-Dcn_2_1\|Substantia_nigra / BrainAtlas - Mouse McCarroll V32	COL23A1 SP3 COL9A2 PIN4	1.53e-05	142	47	4	671ba8869db7a6dc69fd1caf0e561f15a312b170
ToppCell	Substantia_nigra-Endothelial-ENDOTHELIAL_TIP-Dcn_2\|Substantia_nigra / BrainAtlas - Mouse McCarroll V32	COL23A1 SP3 COL9A2 PIN4	1.53e-05	142	47	4	3557084150670fd2e2634fc674f228ab85181b59
ToppCell	Substantia_nigra-Endothelial-ENDOTHELIAL_TIP-Dcn_2-Dcn_2_1-Endothelial_Tip.Dcn.Alcam_(Alcam)\|Substantia_nigra / BrainAtlas - Mouse McCarroll V32	COL23A1 SP3 COL9A2 PIN4	1.53e-05	142	47	4	6a656d28c9f5dfb03a3a2d908cf2edbe0a5b1206
ToppCell	Substantia_nigra-Endothelial-ENDOTHELIAL_TIP-Dcn_2-Dcn_2_1-Endothelial_Tip.Dcn.Alcam_(Alcam)-\|Substantia_nigra / BrainAtlas - Mouse McCarroll V32	COL23A1 SP3 COL9A2 PIN4	1.53e-05	142	47	4	a3d1f4b570b75402171e38c5a7c88e2896520c8f
ToppCell	metastatic_Lymph_Node-T/NK_cells-CD8_low_T\|T/NK_cells / Location, Cell class and cell subclass	DNAJB13 PTPRG COL28A1 LAMA1	1.80e-05	148	47	4	db046a02a00829910bf9d7dbda068e730aa78f00
ToppCell	Children_(3_yrs)-Mesenchymal-chondrocyte-D046\|Children_(3_yrs) / Lineage, Cell type, age group and donor	SHANK1 COL24A1 COL6A5 COL21A1	2.32e-05	158	47	4	e5636c0b608d68bd426a2b446ac508e4512e86a4
ToppCell	facs-Marrow-B-cells-24m-Lymphocytic-precursor_B_cell\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	COL24A1 COL6A5 PTPRG LAMA1	2.44e-05	160	47	4	c381ec6be8cf887861cc18f831a20db42f953fe1
ToppCell	facs-Marrow-B-cells-24m-Lymphocytic-pre_B_cell\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	COL24A1 COL6A5 PTPRG LAMA1	2.44e-05	160	47	4	25c8f3d2a6d14ff0ca0b965fce89d3ff22f40585
ToppCell	5'-Adult-Appendix-Hematopoietic-T_cells-ILC3\|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract	SHANK1 ZNF385D COL9A2 GPC5	2.62e-05	163	47	4	00e791358a7eb6c3e95f87afe22153845012e4a1
ToppCell	TCGA-Colorectal-Solid_Tissue_Normal-Colon_normal_tissue-Colon_normal_tissue-9\|TCGA-Colorectal / Sample_Type by Project: Shred V9	TCEAL6 FRMPD4 MAP6 COL21A1	2.82e-05	166	47	4	68e6fc7c0040bbe48a93f96ecf28afffdc626845
ToppCell	PND28-Immune-Immune_Myeloid-DC-cDC1-cDC1_prolif\|PND28 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	LSM4 TOP2A PIN4 KNL1	3.78e-05	179	47	4	9dea57494d59abd6e8abf34e31faf53462ea0fa0
ToppCell	5'-Adult-SmallIntestine-Mesenchymal-fibroblastic-Stromal_1_(ADAMDEC1+)\|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract	SHANK1 COL24A1 COL6A5 MAP6	3.86e-05	180	47	4	f2f6e83127a4a415e65c76a35efa8175fbd5b5d9
ToppCell	5'-Adult-SmallIntestine-Neuronal\|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TMOD2 TCEAL6 COL21A1 COL28A1	3.86e-05	180	47	4	5e6e38ee0758ef2342a6a821c78ed24b57bb7b11
ToppCell	5'-Adult-SmallIntestine-Neuronal-Glial_mature-Adult_Glia\|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TMOD2 TCEAL6 COL21A1 COL28A1	3.86e-05	180	47	4	b88cd7ae922782176c057342d1b9eb9b8e5e7204
ToppCell	5'-Adult-SmallIntestine-Neuronal-Glial_mature\|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TMOD2 TCEAL6 COL21A1 COL28A1	3.86e-05	180	47	4	ebd6e719a03f25155fa8181be19469d04d6d10a6
ToppCell	renal_medulla_nuclei-CKD+DKD_normotensive-Epithelial-Distal_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell\|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D GPC5 LAMA1	4.12e-05	183	47	4	31ab55d5f3639f5964541d5eae23044dbda3356e
ToppCell	3'_v3-lymph-node_spleen-Lymphocytic_Invariant-Inducer-like-ILC3\|lymph-node_spleen / Manually curated celltypes from each tissue	SHANK1 ZNF385D COL24A1 COL9A2	4.21e-05	184	47	4	479e60f76c191253e23699c9dd7ef7efc08c59ad
ToppCell	Adult-Epithelial-ciliated_cell-D175\|Adult / Lineage, Cell type, age group and donor	DNAJB13 STOX1 MAP6 COL21A1	4.30e-05	185	47	4	30f4980dee6cd5959655f8d74049f3bfb5312611
ToppCell	renal_medulla_nuclei-CKD+DKD_normotensive-Epithelial-Distal_tubule_epithelial_cell\|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D GPC5 LAMA1	4.30e-05	185	47	4	898a093757f86be3e18d2ef1f16a71f50ef81dc3
ToppCell	renal_cortex_nuclei-Hypertensive_with+without-CKD-Epithelial-Distal_tubule_epithelial_cell-kidney_distal_convoluted_tubule_epithelial_cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D GPC5 LAMA1	4.58e-05	188	47	4	eec3d353e51358db4c7621265ee0fdd4298e5b0e
ToppCell	renal_cortex_nuclei-Hypertensive_with+without-CKD-Epithelial-Distal_tubule_epithelial_cell-kidney_distal_convoluted_tubule_epithelial_cell-Distal_Convoluted_Tubule_Cell_Type_1\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D GPC5 LAMA1	4.58e-05	188	47	4	bc089cd73d283ed7d2ecbb3936673b4edc89f666
ToppCell	systemic_lupus_erythematosus-managed-Lymphocytic_B-plasmablast\|systemic_lupus_erythematosus / PBMC cell types (v2) per disease, treatment status, and sex	FRMPD4 RRBP1 TOP2A KNL1	4.58e-05	188	47	4	8cf135da4d1d2500755d2809d60b41509af9fa8b
ToppCell	COVID-19-kidney-DCT\|kidney / Disease (COVID-19 only), tissue and cell type	COL4A3 ZNF385D GPC5 LAMA1	4.58e-05	188	47	4	df1fd0819d301679f3c9ea404e942e39095912eb
ToppCell	renal_cortex_nuclei-Adult_normal_reference-Epithelial-Distal_tubule_epithelial_cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D GPC5 LAMA1	4.67e-05	189	47	4	f51cdc9a47371cab8ed9ae63a6f14da07ede446c
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Distal_tubule_epithelial_cell-kidney_distal_convoluted_tubule_epithelial_cell\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D GPC5 LAMA1	4.67e-05	189	47	4	7eb8f5a951e80f1cfac4d7c9eb169f4eb100c917
ToppCell	renal_cortex_nuclei-Adult_normal_reference-Epithelial-Distal_tubule_epithelial_cell-kidney_distal_convoluted_tubule_epithelial_cell-Distal_Convoluted_Tubule_Cell_Type_1\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D GPC5 LAMA1	4.67e-05	189	47	4	977a813e5d7a5a561c1fced2bbf21c20056b88d8
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Distal_tubule_epithelial_cell\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D GPC5 LAMA1	4.67e-05	189	47	4	55420853f730b433ef58ac9337ac84ac78a247a0
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Distal_tubule_epithelial_cell-kidney_distal_convoluted_tubule_epithelial_cell-Distal_Convoluted_Tubule_Cell_Type_1\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D GPC5 LAMA1	4.67e-05	189	47	4	975c0f079903ae36b0ffa54e86294d42ec7697de
ToppCell	renal_papilla_nuclei-Adult_normal_reference-Epithelial-Intermediate_tubule_epithelial_cell-kidney_loop_of_Henle_thin_ascending_limb_epithelial_cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 GPC5 PTPRG LAMA1	4.77e-05	190	47	4	1cf023e3c6924d6a06f353d4b62444b6f2fee8a7
ToppCell	PND10\|World / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	MACF1 RRBP1 G3BP2 HNRNPU	4.77e-05	190	47	4	d67e2814047c8df2ae4b7bc8be9539f5df6ecef2
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Intermediate_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	GPC5 PTPRG COL28A1 LAMA1	4.77e-05	190	47	4	bf4511395fa97efd1c1cd17cc9bebb0271ee7f0e
ToppCell	PCW_13-14\|World / Celltypes from embryonic and fetal-stage human lung	ZNF385D MACF1 COL24A1 COL21A1	4.77e-05	190	47	4	62a3ec1ae0829602b0569cc051210551644f1d46
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Intermediate_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell-Adaptive_/_Maladaptive_/_Repairing_Thick_Ascending_Limb_Cell\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	GPC5 PTPRG COL28A1 LAMA1	4.77e-05	190	47	4	b6b8964b4910083499681b5fdf554e127b6a4c4e
ToppCell	renal_cortex_nuclei-Hypertensive_with+without-CKD-Epithelial-Distal_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell-Cortical_Thick_Ascending_Limb_Cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 GPC5 COL28A1 LAMA1	4.77e-05	190	47	4	3dcadabbefe0128a5f30ab51234f049ab4d870c6
ToppCell	renal_cortex_nuclei-Hypertensive_with+without-CKD-Epithelial-Distal_tubule_epithelial_cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D GPC5 LAMA1	4.77e-05	190	47	4	b94df372bc08de11585b2467dba8c8fffff5cd92
ToppCell	renal_papilla_nuclei-Adult_normal_reference-Epithelial-Intermediate_tubule_epithelial_cell-kidney_loop_of_Henle_thin_ascending_limb_epithelial_cell-Ascending_Thin_Limb_Cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 GPC5 PTPRG LAMA1	4.77e-05	190	47	4	59bbbd2c8d4b7ce46c54ca8022b1557e7e5eee2a
ToppCell	renal_cortex_nuclei-Adult_normal_reference-Epithelial-Distal_tubule_epithelial_cell-kidney_distal_convoluted_tubule_epithelial_cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D GPC5 LAMA1	4.77e-05	190	47	4	e252e925600e6457fa6e362a55217f4cffa75cdb
ToppCell	kidney_cells-Hypertensive_with+without-CKD-Epithelial-Distal_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell-Medullary_Thick_Ascending_Limb_Cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 ZNF385D COL24A1 LAMA1	4.97e-05	192	47	4	ee27d27e3d269764dbe8711d0b37ff9331a298a9
ToppCell	facs-Aorta-Heart-3m\|Aorta / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	MACF1 MTREX PTPRG HNRNPU	4.97e-05	192	47	4	1ccc47792edf9ee23501c8e2165d11271636b66a
ToppCell	renal_cortex_nuclei-Hypertensive_with+without-CKD-Epithelial-Distal_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 GPC5 COL28A1 LAMA1	4.97e-05	192	47	4	562df5e87038c500dd3a003fe5374cb31946b145
ToppCell	368C-Fibroblasts-Fibroblast-G-\|Fibroblasts / Donor, Lineage, Cell class and subclass (all cells)	MACF1 COL6A5 CD46 COL21A1	5.17e-05	194	47	4	d9eec28fa7b255c0ec023276dd955f1e276e7159
ToppCell	droplet-Pancreas-Exocrine-21m-Mesenchymal\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	COL6A5 MTREX TOP2A KNL1	5.17e-05	194	47	4	04ecb609d233a4b12e275c604810937830363e17
ToppCell	droplet-Pancreas-Exocrine-21m-Mesenchymal-pancreatic_stellate_cell\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	COL6A5 MTREX TOP2A KNL1	5.17e-05	194	47	4	775600880bb77781de48085d8744c1030223de1f
ToppCell	368C-Fibroblasts-Fibroblast-G\|Fibroblasts / Donor, Lineage, Cell class and subclass (all cells)	MACF1 COL6A5 CD46 COL21A1	5.17e-05	194	47	4	e4d7e9709ce42d4610e44d3445927eefbcbb9eff
ToppCell	primary_visual_cortex-Neuronal\|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	SHANK1 TCEAL6 MORF4L2 G3BP2	5.38e-05	196	47	4	8efc2b3a95f57c31be203ac781b2098d4909297f
ToppCell	PCW_13-14-Mesenchymal-Mesenchymal_fibroblastic\|PCW_13-14 / Celltypes from embryonic and fetal-stage human lung	ZNF385D MACF1 COL24A1 COL21A1	5.38e-05	196	47	4	1450cb69c5bf469e97c03bf1890f6f7c54165b8a
ToppCell	PCW_07-8.5-Mesenchymal\|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung	ZNF385D COL24A1 PTPRG COL21A1	5.38e-05	196	47	4	8e10802f52e5e1853ea4ad34bf9a32a34e6112b5
ToppCell	RA-02._Fibroblast_II\|World / Chamber and Cluster_Paper	COL4A3 ABCC1 COL24A1 PTPRG	5.38e-05	196	47	4	e8cbda03837f1f26470a9d93aa7fdaa04e08e38a
ToppCell	LPS_anti-TNF-Mesenchymal_fibroblastic-Fibroblasts-Activated_MatrixFB\|LPS_anti-TNF / Treatment groups by lineage, cell group, cell type	MACF1 COL6A5 RRBP1 COL21A1	5.49e-05	197	47	4	fdb92985f7df0c280b87d3e43c2394e70786a2c7
ToppCell	severe-low-quality_cells\|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class	TCF25 MACF1 HNRNPU VPS13A	5.49e-05	197	47	4	57ebd552f10d6278623b52a3d484d4b91ae1d028
ToppCell	H1299-infected-SARSCoV2\|infected / Cell line, Condition and Strain	TCF25 RRBP1 TOP2A PIN4	5.49e-05	197	47	4	0fa3e4cf93e77d78b1f97b906c5b13ca741ae17e
ToppCell	PCW_13-14-Mesenchymal\|PCW_13-14 / Celltypes from embryonic and fetal-stage human lung	ZNF385D COL24A1 PTPRG COL21A1	5.49e-05	197	47	4	73a2085d2682d636726a5432d572ae2a3fbe1c3f
ToppCell	PCW_10-12-Mesenchymal-Mesenchymal_fibroblastic-mes_immature1_(0)\|PCW_10-12 / Celltypes from embryonic and fetal-stage human lung	ZNF385D MACF1 COL24A1 COL21A1	5.49e-05	197	47	4	11a4c417f035e554431a8f03be13b5eefa3530c0
ToppCell	PSB\|World / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)	STOX1 MAP6 COL21A1 COL28A1	5.60e-05	198	47	4	4e6b0d1abc55d7a0d89bd7ecf0f13dc5bed66626
ToppCell	PCW_10-12-Mesenchymal-Mesenchymal_fibroblastic\|PCW_10-12 / Celltypes from embryonic and fetal-stage human lung	ZNF385D MACF1 COL24A1 COL21A1	5.60e-05	198	47	4	17dc055e2a289496d9c5cdbf3297bdf906dc6d22
ToppCell	Control_saline-Mesenchymal_fibroblastic-Fibroblasts-Activated_MatrixFB\|Control_saline / Treatment groups by lineage, cell group, cell type	MACF1 COL6A5 STOX1 COL21A1	5.60e-05	198	47	4	0c4d2c68a42f8a9e964e2dd28092fe75f5216834
ToppCell	3'-GW_trimst-1.5-SmallIntestine-Mesenchymal-immature_mesenchymal_cell-Mesoderm_2_(ZEB2+)\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	THUMPD1 COL24A1 RRBP1 COL21A1	5.71e-05	199	47	4	08bdcabc3fce787578a8eb66fc8412b0974fa6cc
ToppCell	mild-low-quality_cells\|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class	TCF25 MACF1 HNRNPU VPS13A	5.71e-05	199	47	4	f0b0097df0026496470a80d8cc9375ffd8389b00
ToppCell	PCW_10-12-Mesenchymal\|PCW_10-12 / Celltypes from embryonic and fetal-stage human lung	ZNF385D COL24A1 PTPRG COL21A1	5.71e-05	199	47	4	a09292de4c4447b8eee55d401808e43b817321cc
ToppCell	3'-GW_trimst-1.5-SmallIntestine-Mesenchymal-immature_mesenchymal_cell\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	THUMPD1 COL24A1 COL21A1 TOP2A	5.71e-05	199	47	4	01ab0363558f215f9979e20fd5170d8fee149cea
ToppCell	LPS_IL1RA-Mesenchymal_fibroblastic-Fibroblasts-MatrixFB\|LPS_IL1RA / Treatment groups by lineage, cell group, cell type	MACF1 COL6A5 COL21A1 LAMA1	5.71e-05	199	47	4	a7dd94b172c973a131a6792f8ccd9bfe44d984ac
ToppCell	10x_3'_v2v3-Neoplastic-Differentiated-like-AC-like-AC-like_Prolif-F\|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	LSM4 COL28A1 TOP2A HNRNPU	5.71e-05	199	47	4	89d7622c4ae146900d963ac68c6bf011e8674665
ToppCell	Bronchial-NucSeq-Stromal-Chondrocytic\|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations	ZNF385D TSPYL5 TCEAL6 COL9A2	5.82e-05	200	47	4	b7b9441fa7ab0d43741a2ebd5ec1a48d537c6d47
ToppCell	LPS_anti-TNF-Mesenchymal_fibroblastic-Fibroblasts-MatrixFB\|LPS_anti-TNF / Treatment groups by lineage, cell group, cell type	MACF1 COL6A5 COL21A1 LAMA1	5.82e-05	200	47	4	9b0916d8d07ac2bf1739f7be5296bf77ffee6094
ToppCell	10x3'2.3-week_12-13-Mesenchymal_fibro-stroma\|week_12-13 / cell types per 3 fetal stages;per 3',per 5'	ZNF385D GPC5 PTPRG COL21A1	5.82e-05	200	47	4	64d2941689d7ca8af54f9ba21c5aeabf719084ef
ToppCell	Tracheal-NucSeq-Stromal-Chondrocytic\|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations	ZNF385D TSPYL5 COL9A2 GPC5	5.82e-05	200	47	4	b5a54b9baf79aea01f76a161f0a39bbe87eb4945
ToppCell	Tracheal-NucSeq-Stromal-Chondrocytic-Chondrocyte\|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations	ZNF385D TSPYL5 COL9A2 GPC5	5.82e-05	200	47	4	f5bd0b30e478dac09f68c46b0781f5f2e7e3c693
ToppCell	10x3'2.3-week_12-13-Mesenchymal_fibro\|week_12-13 / cell types per 3 fetal stages;per 3',per 5'	ZNF385D GPC5 PTPRG COL21A1	5.82e-05	200	47	4	76f3043cb88071256ff661885fe5a82a54f5b733
ToppCell	Bronchial-NucSeq-Stromal-Chondrocytic-Chondrocyte\|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations	ZNF385D TSPYL5 TCEAL6 COL9A2	5.82e-05	200	47	4	7c673ad0ea503ebd196579684d25d5f9e6a41030
ToppCell	Cerebellum-Endothelial-ENDOTHELIAL_TIP\|Cerebellum / BrainAtlas - Mouse McCarroll V32	COL23A1 MANSC4 LAMA1	5.19e-04	149	47	3	3980fa4f1986a2f164a1826ea043fb71f1d756cd
ToppCell	10x_3'_v3-thymus_(10x_3'_v3)-lymphocytic-T_lymphocytic_-_developing-DN4_thymocyte\|thymus_(10x_3'_v3) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type	SHANK1 TOP2A KNL1	5.19e-04	149	47	3	89faa84af68d4727180f39718964bb3bc65d8fe6
ToppCell	PND07-Immune-Immune_Myeloid-DC-cDC2-cDC2_G2M\|PND07 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	PRDM9 TOP2A KNL1	5.71e-04	154	47	3	e3a8a1e63ab345de62bd2e5e54342b00f04ae422
ToppCell	Children_(3_yrs)-Mesenchymal-airway_smooth_muscle_cell-D032\|Children_(3_yrs) / Lineage, Cell type, age group and donor	COL23A1 ZNF385D PTPRG	5.82e-04	155	47	3	cd7d95cbcad248670e531d80bb83c55e36ebc573
ToppCell	PND14-Immune-Immune_Myeloid-DC-cDC2-cDC2_prolif\|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	LSM4 TOP2A KNL1	5.93e-04	156	47	3	8349604bd801e20d33770f7d8243598c3756302b
ToppCell	wk_15-18-Mesenchymal-Myofibro_&_SMC-Myofibro_2\|wk_15-18 / Celltypes from embryonic and fetal-stage human lung	COL23A1 ZNF385D COL24A1	6.04e-04	157	47	3	b9d04ee417c0d8ea0801d10f1c54e138587009fd
ToppCell	Children_(3_yrs)-Mesenchymal-chondrocyte\|Children_(3_yrs) / Lineage, Cell type, age group and donor	COL24A1 COL6A5 COL21A1	6.04e-04	157	47	3	f147e24f2ece82e1c54750868954d09b3c461804
ToppCell	Mild-Lymphoid-Plasma-\|Mild / Condition, Lineage, Cell class and cell subclass	COL4A3 COL24A1 TOP2A	6.38e-04	160	47	3	aa79848913910c01249d6cacf4ed53ec0e4f5c3d
ToppCell	LPS-IL1RA-Stromal_mesenchymal-Fibroblasts-MatrixFB_->_Myofibroblast\|LPS-IL1RA / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	COL23A1 STOX1 EML3	6.38e-04	160	47	3	778faada072e3abfa76a9a06fd4885fb63de7902
ToppCell	Mild-Lymphoid-Plasma\|Mild / Condition, Lineage, Cell class and cell subclass	COL4A3 COL24A1 TOP2A	6.38e-04	160	47	3	7fdb849f5caf5a127a2582326215e11f8eb4fa0e
ToppCell	facs-Lung-EPCAM-3m-Endothelial-Capillary_Type_1_Cell\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ABCC1 TOP2A KNL1	6.50e-04	161	47	3	a7e74bc80ac11250e353e5614b19c05793fc2e95
ToppCell	10x5'-Liver-Lymphocytic_Invariant-Inducer-like-ILC3\|Liver / Manually curated celltypes from each tissue	COL24A1 COL9A2 GKAP1	6.73e-04	163	47	3	7f61483eeb1fde21843c6391468e13cb0cc2a89f
ToppCell	LV-16._Neuronal\|World / Chamber and Cluster_Paper	TMOD2 COL21A1 COL28A1	6.98e-04	165	47	3	6ed52cb756d21addf46c7f6c457458b01339fe04
ToppCell	healthy_donor-Lymphocytic-Plasma_cell-IgM_Plasmablast\|healthy_donor / Disease condition, Lineage, Cell class and subclass	COL24A1 PTPRG TOP2A	7.10e-04	166	47	3	2b7b580bec8d9467b0deaf97098065f72dbf2a4f
ToppCell	343B-Lymphocytic-CD4_T-cell-Proliferating_T_cell\|343B / Donor, Lineage, Cell class and subclass (all cells)	COL24A1 TOP2A KNL1	7.22e-04	167	47	3	315cde87eed2b42a1b9b068fae94caa10ec64c70
ToppCell	PND14-Immune-Immune_Lymphocytic_T/NK-Lymphocytic_T-Treg\|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	DNAJB13 TOP2A KNL1	7.35e-04	168	47	3	c09aa66fd1374ecc4b4d4b56600a6f04aafa5be9
ToppCell	3'_v3-Lung-Lymphocytic_Invariant-Inducer-like\|Lung / Manually curated celltypes from each tissue	SHANK1 COL24A1 COL21A1	7.35e-04	168	47	3	b9bde6f542d730682d34a80e1f7f1609e5c699c7
ToppCell	COVID-19-Heart-Neuronal\|COVID-19 / Disease (COVID-19 only), tissue and cell type	TMOD2 COL21A1 COL28A1	7.35e-04	168	47	3	88c2c574f428c2502b5fe099bd73b0758f668ef6
ToppCell	RA-01._Fibroblast_I\|RA / Chamber and Cluster_Paper	COL4A3 COL24A1 PTPRG	7.48e-04	169	47	3	6373562ab3b1765060212a6a53d6543e7e942e80
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Distal_tubule_epithelial_cell-kidney_distal_convoluted_tubule_epithelial_cell_cycling-Cycling_Distal_Convoluted_Tubule_Cell_S-high\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	GPC5 TOP2A KNL1	7.48e-04	169	47	3	e7514956b2e4298222ec443f98b2f5289451786e
ToppCell	PND14-Immune-Immune_Lymphocytic_T/NK-Lymphocytic_ILC-NK-ILC-ILC_G2M\|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	DNAJB13 TOP2A KNL1	7.61e-04	170	47	3	b04e2f84024baaae9b4ff19bdac8c69afdb92a76
ToppCell	343B-Lymphocytic-CD4_T-cell-Proliferating_T_cell\|Lymphocytic / Donor, Lineage, Cell class and subclass (all cells)	COL24A1 TOP2A KNL1	7.74e-04	171	47	3	4ccd88cf812dd8bfdc55159c6f504e9c84e4f4fc
ToppCell	renal_medulla_nuclei-Hypertensive_with+without-CKD-Epithelial-Distal_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell-Medullary_Thick_Ascending_Limb_Cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	ZNF385D GPC5 LAMA1	7.87e-04	172	47	3	1565f38266891c3acf49778838de134c5dee5460
ToppCell	normal-na-Hematopoietic-Progen-male\|normal / PBMC cell types (v2) per disease, treatment status, and sex	DNAJB13 COL23A1 COL28A1	8.00e-04	173	47	3	e666364eb110c1c976e5b09a632dd1454513f131
ToppCell	facs-Pancreas-Exocrine-3m-Epithelial-pancreatic_acinar_cell\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	SHANK1 FAM193B RRBP1	8.00e-04	173	47	3	f612d4ea9ab8dcde475f4118bca3e49be786e7fa
ToppCell	facs-Pancreas-Exocrine-3m-Epithelial-pancreatic_acinar_cell\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	SHANK1 FAM193B RRBP1	8.00e-04	173	47	3	c62e3ffed55bbb00dcaef6da0aab8446f3f55085
ToppCell	facs-Brain_Myeloid-Cerebellum-3m-Myeloid-nan\|Brain_Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	MACF1 SP3 RRBP1	8.00e-04	173	47	3	869da6a65d1b9b7529c666ec44e3c8ddec2ea408
ToppCell	facs-Brain_Myeloid-Cerebellum-3m-Myeloid\|Brain_Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	MACF1 SP3 RRBP1	8.00e-04	173	47	3	0672bd8a4a9d18af343d01f09253fb3388896c10
Computational	Neighborhood of BUB3	LSM4 SSB KARS1 MTREX G3BP2 HNRNPU	2.53e-05	277	24	6	MORF_BUB3
Computational	Neighborhood of SOD1	LSM4 SSB KARS1 MORF4L2 G3BP2 HNRNPU	2.58e-05	278	24	6	MORF_SOD1
Computational	Neighborhood of RAD23A	LSM4 SSB KARS1 MTREX G3BP2 HNRNPU	9.05e-05	348	24	6	MORF_RAD23A
Computational	Neighborhood of PPP2CA	SSB KARS1 G3BP2 HNRNPU	1.75e-04	129	24	4	MORF_PPP2CA
Computational	Neighborhood of AP3D1	SSB KARS1 G3BP2 HNRNPU	1.80e-04	130	24	4	MORF_AP3D1
Computational	Neighborhood of DEK	SP3 SSB KARS1 G3BP2 HNRNPU	2.49e-04	264	24	5	MORF_DEK
Computational	Neighborhood of EI24	LSM4 SSB MTREX G3BP2	2.59e-04	143	24	4	MORF_EI24
Computational	Neighborhood of RFC4	SSB MTREX TOP2A HNRNPU	3.19e-04	151	24	4	MORF_RFC4
Computational	Neighborhood of RPA1	SP3 KARS1 HNRNPU	3.23e-04	61	24	3	MORF_RPA1
Computational	Neighborhood of HDAC2	SSB KARS1 MTREX G3BP2 HNRNPU	3.27e-04	280	24	5	MORF_HDAC2
Computational	Neighborhood of CUL1	SSB KARS1 HNRNPU	5.27e-04	72	24	3	MORF_CUL1
Computational	Neighborhood of RAD21	SP3 KARS1 MORF4L2 HNRNPU	6.22e-04	180	24	4	MORF_RAD21
Computational	Response to DNA damage.	ABCC1 KARS1 TOP2A HNRNPU	7.18e-04	187	24	4	MODULE_244
Computational	Neighborhood of RRM1	MTREX G3BP2 HNRNPU	1.45e-03	102	24	3	MORF_RRM1
Computational	Neighborhood of XRCC5	SSB MTREX G3BP2 HNRNPU	1.68e-03	235	24	4	MORF_XRCC5
Computational	Neighborhood of EIF3S2	LSM4 SSB MTREX G3BP2	1.98e-03	246	24	4	MORF_EIF3S2
Computational	Neighborhood of PSMC2	SP3 KARS1 MORF4L2	2.05e-03	115	24	3	MORF_PSMC2
Computational	Neighborhood of BAG5	G3BP2 YTHDF3	3.20e-03	38	24	2	GCM_BAG5
Drug	GK-101	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	9.68e-09	36	46	5	CID000161853
Drug	Madecassol	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	3.47e-08	46	46	5	CID000108062
Drug	d-indobufen	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	5.33e-08	50	46	5	CID000044562
Drug	ridogrel	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	6.51e-08	52	46	5	CID005362391
Drug	NSC49633	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	7.18e-08	53	46	5	CID000023340
Drug	AC1L1C2F	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1 LAMA1	8.87e-08	110	46	6	CID000001711
Drug	AC1LAKND	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	1.60e-07	62	46	5	CID000470146
Drug	BAPN	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	3.17e-07	71	46	5	CID000001647
Drug	malotilate	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	3.17e-07	71	46	5	CID000004006
Drug	AC1NMZ1B	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	4.18e-07	75	46	5	CID005034185
Drug	strontium ranelate	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	4.77e-07	77	46	5	CID006918182
Drug	halofuginone lactate	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	7.82e-07	85	46	5	CID000062891
Drug	hyaluronan	COL23A1 COL4A3 COL24A1 COL9A2 GPC5 COL21A1 PIN4	9.23e-07	263	46	7	CID000024759
Drug	4-hydroxyproline	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	1.10e-06	91	46	5	CID000000825
Drug	ticlopidine	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	2.03e-06	103	46	5	CID000005472
Drug	hydroxylysine	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	2.69e-06	109	46	5	CID000001029
Drug	PPACK	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	3.21e-06	113	46	5	CID003036757
Drug	AC1L9732	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	3.35e-06	114	46	5	CID000439300
Drug	Tranilast sodium	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	3.50e-06	115	46	5	CID000005527
Drug	Selara	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	5.27e-06	125	46	5	CID000150310
Drug	DMSe	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	6.88e-06	132	46	5	CID000020796
Drug	pirfenidone	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	8.54e-06	138	46	5	CID000040632
Drug	DL-penicillamine	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	8.84e-06	139	46	5	CID000004727
Drug	PCR 4099	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	8.84e-06	139	46	5	CID000002806
Drug	prostacyclin sodium salt	COL23A1 COL4A3 COL24A1 COL9A2 CD46 COL21A1	1.07e-05	250	46	6	CID000000159
Drug	candesartan cilexetil	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	1.09e-05	145	46	5	CID000002540
Drug	colchine	COL23A1 COL4A3 ABCC1 COL24A1 COL9A2 COL21A1 LAMA1	1.10e-05	383	46	7	CID000002833
Drug	5-fluorotryptophan	KARS1 MTREX RRBP1	1.72e-05	25	46	3	CID000009577
Drug	L-lysyl-L-lysyl-L-lysine	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	1.86e-05	162	46	5	CID000072363
Drug	khellin	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	2.41e-05	171	46	5	CID000003828
Drug	AC1L1DD6	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	3.00e-05	179	46	5	CID000002299
Drug	Hycanthone [3105-97-3]; Down 200; 11.2uM; HL60; HG-U133A	SUGP1 ABCC1 MACF1 CD46 VPS13A	3.70e-05	187	46	5	1614_DN
Drug	12(S)-hydroxyeicosatetraenoic acid	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	3.89e-05	189	46	5	CID000001413
Drug	foscarnet	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	3.99e-05	190	46	5	CID000003414
Drug	Chlorpheniramine maleate [113-92-8]; Down 200; 10.2uM; PC3; HT_HG-U133A	CD46 RRBP1 PPFIA1 PIN4 VPS13A	4.09e-05	191	46	5	2055_DN
Drug	Tiratricol, 3,3',5-triiodothyroacetic acid [51-24-1]; Down 200; 6.4uM; HL60; HG-U133A	THUMPD1 ABCC1 RRBP1 G3BP2 HNRNPU	4.30e-05	193	46	5	1412_DN
Drug	AC1L1KMJ	COL23A1 COL4A3 MACF1 COL24A1 COL9A2 COL21A1 LAMA1	4.42e-05	476	46	7	CID000030956
Drug	Hydrochlorothiazide [58-93-5]; Down 200; 13.4uM; PC3; HG-U133A	SUGP1 TCF25 CD46 EML3 G3BP2	4.62e-05	196	46	5	1906_DN
Drug	AC1L18QD	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1 PIN4	4.68e-05	325	46	6	CID000000213
Drug	Nitrarine dihydrochloride [20069-05-0]; Down 200; 10.6uM; HL60; HT_HG-U133A	SUGP1 COL4A3 RRBP1 EML3 PIN4	4.85e-05	198	46	5	2188_DN
Drug	LMWH	COL23A1 COL4A3 COL24A1 COL9A2 GPC5 STOX1 COL21A1 LAMA1	4.86e-05	663	46	8	CID000000772
Drug	4-fluoranylproline	COL4A3 PIN4	5.96e-05	6	46	2	CID000450594
Drug	AC1Q6PCP	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	9.85e-05	230	46	5	CID000005267
Drug	losartan	COL23A1 COL4A3 COL24A1 COL9A2 GPC5 COL21A1	1.08e-04	378	46	6	CID000003961
Drug	hypericin	ABCC1 TOP2A	1.11e-04	8	46	2	ctd:C004965
Drug	fluorine atom	SUGP1 SP3 MAP6	1.33e-04	49	46	3	CID005360525
Drug	chondroitin sulfate	COL23A1 COL4A3 COL24A1 COL9A2 GPC5 COL21A1	1.74e-04	413	46	6	CID000024766
Drug	AC1L1C2X	SP3 LAMA1	2.17e-04	11	46	2	CID000001717
Drug	dithiane	ABCC1 SP3	2.17e-04	11	46	2	CID000136335
Drug	Y-27632	COL23A1 COL4A3 COL24A1 COL9A2 RRBP1 COL21A1	2.57e-04	444	46	6	CID000005711
Drug	AC1LAPJB	SUGP1 SP3	2.60e-04	12	46	2	CID000517869
Drug	silibinin	COL23A1 COL4A3 COL24A1 COL9A2 COL21A1	2.67e-04	285	46	5	CID000005213
Drug	Verteporfin [129497-78-5]; Down 200; 2.8uM; MCF7; HT_HG-U133A	CD46 RRBP1 PTPRG VPS13A	3.12e-04	161	46	4	3556_DN
Disease	cervical cancer	ZNF385D GPC5 STOX1	3.15e-05	40	45	3	MONDO_0002974
Disease	frontotemporal dementia, age at onset	RRBP1 COL28A1	1.76e-04	13	45	2	EFO_0004847, MONDO_0017276
Disease	Intellectual Disability	MACF1 KARS1 FRMPD4 HNRNPU LAMA1	5.79e-04	447	45	5	C3714756
Disease	Colorectal Carcinoma	SHANK1 ZNF385D ABCC1 CD46 LAMA1 VPS13A	6.56e-04	702	45	6	C0009402
Disease	pre-eclampsia (is_implicated_in)	CD46 STOX1	6.67e-04	25	45	2	DOID:10591 (is_implicated_in)
Disease	Hereditary hearing loss and deafness	COL4A3 COL9A2 KARS1	1.45e-03	146	45	3	cv:C0236038
Disease	cervix uteri carcinoma in situ (is_marker_for)	CD46 TOP2A	1.88e-03	42	45	2	DOID:8991 (is_marker_for)
Disease	migraine disorder	SUGP1 MACF1 TSPYL5 RRBP1	2.12e-03	357	45	4	MONDO_0005277

Protein segments in the cluster

Peptide	Gene	Start	Entry
VKKGQKGNPKGRQNE	PTPRG	1001	P23470
RAGVKGKGPVNKGNT	ZNF385D	246	Q9H6B1
GKGPVNKGNTGLQNK	ZNF385D	251	Q9H6B1
KGQQGRRGKTGPKGD	COL4A3	826	Q01955
PGKGKGRNTGKSQTL	GKAP1	31	Q5VSY0
QGGGGPKAQKGTKVR	MSGN1	106	A6NI15
KDQGSVVPGLLKGQG	MAP6	461	Q96JE9
PVVENGKQISGFGKK	CD46	231	P15529
AQPGSGKGKVQFQGK	SSB	346	P05455
GIKAQSGNPEVKVKG	GPC5	436	P78333
RGVPGRKGVKGQKGE	COL23A1	501	Q86Y22
KKAQGPKGGGNAVKV	PIN4	26	Q9Y237
PGARQGQQQAGGKKK	HNRNPU	201	Q00839
GGQGNSRRGLNKPSK	MACF1	3481	O94854
KGRPGQTGKEALGQA	PPFIA1	816	Q13136
GKQQGQYKPGQRKSG	MANSC4	311	A6NHS7
RKNKQKTPGNGDGGS	MORF4L2	76	Q15014
ENPKFGIGKGKNLGV	KNL1	1211	Q8NG31
TNGAVNGKGSLKGQP	GBA	226	P04062
GQKVNPGNTGKLFVG	PRDM9	501	Q9NQV7
GPQGLQGLSIKGEKG	COL28A1	421	Q2UY09
RGVGTQGPKGDTGQK	COL28A1	681	Q2UY09
GGKPQKGKRQGSQAK	FAM193B	711	Q96PV7
GKAPPNGNTTGKKQQ	FRMPD4	1036	Q14CM0
RINTKGVGGKLPNFG	G3BP2	361	Q9UN86
NNIKGQKGSKGEQGR	COL6A5	1521	A8TX70
GNPGRKGEKGSQGQK	COL6A5	1591	A8TX70
GAVGQIGNTGPKGKR	COL9A2	586	Q14055
KGIQGQKGENGRQGI	COL21A1	706	Q96P44
KGRGRGGLQQQKQQK	LSM4	86	Q9Y4Z0
GGLQGRGVKKQDPQV	DNAJB13	126	P59910
PGNGTLTRKQGVFGK	EML3	441	Q32P44
GNGDGGLVPQRKSRK	POTEA	366	Q6S8J7
NGVTGVSGPGKEAKQ	ABCC1	881	P33527
IIGVQGNPGKTKKGE	KARS1	181	Q15046
GGLGGQIKKSPAVKV	LAMA1	2251	P25391
VKQTKVEGEPQKGGG	SHANK1	1111	Q9Y566
QRGRPGKKGDKGQIG	COL24A1	1111	Q17RW2
LGSEGQGIKNPVNKG	SUGP1	581	Q8IWZ8
KLKPKGNVGIGGSAV	YTHDF3	251	Q7Z739
TGIVTKPIKGAQKGG	VPS13A	2976	Q96RL7
PNQGKKTEGTPNQGK	RRBP1	226	Q9P2E9
PNQGKKAEGTPNQGK	RRBP1	236	Q9P2E9
PNQGKKAEGTPNQGK	RRBP1	246	Q9P2E9
QGKKAERSPNQGKKG	RRBP1	526	Q9P2E9
QKGRKGGTKGPSNVF	MTREX	361	P42285
GVKKRQGLSAKPQGQ	STOX1	411	Q6ZVD7
KEGGGRGTNLGKKKQ	SP3	606	Q02447
QEKQGKSEGEGKPQG	TCEAL6	66	Q6IPX3
KQDEQVGLPGKGGKA	TOP2A	1186	P11388
PGNKGRGQRGNTESK	TCF25	91	Q9BQ70
NKGGKGPVRNVVKGE	TMOD2	156	Q9NZR1
QQTTQPGGGKRKGKA	THUMPD1	6	Q9NXG2
AGRGPQVIAGGRQKK	TSPYL5	156	Q86VY4