Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyMolecularFunction	RNA helicase activity	UPF1 EIF4A1 EIF4A2 DDX5 DDX54	5.36e-07	78	41	5	GO:0003724
GeneOntologyMolecularFunction	ATP-dependent activity, acting on RNA	UPF1 EIF4A1 EIF4A2 DDX5 DDX54	6.09e-07	80	41	5	GO:0008186
GeneOntologyMolecularFunction	helicase activity	CHD3 UPF1 EIF4A1 EIF4A2 DDX5 DDX54	7.98e-07	158	41	6	GO:0004386
GeneOntologyMolecularFunction	ATP hydrolysis activity	CHD3 UPF1 EIF4A1 EIF4A2 DDX5 KIF1C DDX54	2.87e-05	441	41	7	GO:0016887
GeneOntologyMolecularFunction	ribonucleoside triphosphate phosphatase activity	RGS14 CHD3 UPF1 EIF4A1 EIF4A2 DDX5 KIF1C DDX54	1.52e-04	775	41	8	GO:0017111
GeneOntologyMolecularFunction	catalytic activity, acting on RNA	UPF1 EIF4A1 EIF4A2 DDX5 DDX54 FTSJ3	1.94e-04	417	41	6	GO:0140098
GeneOntologyMolecularFunction	ATP-dependent activity	CHD3 UPF1 EIF4A1 EIF4A2 DDX5 KIF1C DDX54	2.27e-04	614	41	7	GO:0140657
GeneOntologyMolecularFunction	pyrophosphatase activity	RGS14 CHD3 UPF1 EIF4A1 EIF4A2 DDX5 KIF1C DDX54	2.61e-04	839	41	8	GO:0016462
GeneOntologyMolecularFunction	hydrolase activity, acting on acid anhydrides	RGS14 CHD3 UPF1 EIF4A1 EIF4A2 DDX5 KIF1C DDX54	2.64e-04	840	41	8	GO:0016817
GeneOntologyMolecularFunction	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	RGS14 CHD3 UPF1 EIF4A1 EIF4A2 DDX5 KIF1C DDX54	2.64e-04	840	41	8	GO:0016818
GeneOntologyMolecularFunction	catalytic activity, acting on a nucleic acid	CHD3 UPF1 EIF4A1 EIF4A2 DDX5 DDX54 FTSJ3	3.07e-04	645	41	7	GO:0140640
GeneOntologyMolecularFunction	chromatin binding	SREBF1 PRDM8 CHD3 UPF1 AKAP8 AHDC1 DDX5	6.93e-04	739	41	7	GO:0003682
GeneOntologyBiologicalProcess	translation	MRPL41 LSM14A UPF1 MRPL15 TRIM3 EIF4A1 PPP1R15B EIF4A2 RPS9	2.22e-05	824	40	9	GO:0006412
GeneOntologyBiologicalProcess	nuclear transport	SHH RGS14 NOP9 UPF1 CHTOP DDX5	8.25e-05	378	40	6	GO:0051169
GeneOntologyBiologicalProcess	nucleocytoplasmic transport	SHH RGS14 NOP9 UPF1 CHTOP DDX5	8.25e-05	378	40	6	GO:0006913
GeneOntologyCellularComponent	ribonucleoprotein complex	MRPL41 LSM14A NOP9 UPF1 MRPL15 SNRPD1 CD2BP2 DDX5 RPS9 FTSJ3	7.85e-05	1194	41	10	GO:1990904
GeneOntologyCellularComponent	eukaryotic translation initiation factor 4F complex	EIF4A1 EIF4A2	2.89e-04	13	41	2	GO:0016281
GeneOntologyCellularComponent	preribosome, small subunit precursor	NOP9 FTSJ3	3.88e-04	15	41	2	GO:0030688
GeneOntologyCellularComponent	RNA cap binding complex	EIF4A1 EIF4A2	5.01e-04	17	41	2	GO:0034518
GeneOntologyCellularComponent	complex of collagen trimers	COL4A3 COL11A2	7.70e-04	21	41	2	GO:0098644
GeneOntologyCellularComponent	U5 snRNP	SNRPD1 CD2BP2	1.09e-03	25	41	2	GO:0005682
GeneOntologyCellularComponent	methyltransferase complex	KMT2C PRDM8 SNRPD1	1.24e-03	108	41	3	GO:0034708
GeneOntologyCellularComponent	preribosome	NOP9 RPS9 FTSJ3	1.45e-03	114	41	3	GO:0030684
MousePheno	absent vertebrae	SHH CHTOP	3.58e-05	5	27	2	MP:0000138
Domain	DEAD_ATP_HELICASE	EIF4A1 EIF4A2 DDX5 DDX54	5.44e-07	31	40	4	PS00039
Domain	RNA-helicase_DEAD-box_CS	EIF4A1 EIF4A2 DDX5 DDX54	7.06e-07	33	40	4	IPR000629
Domain	RNA_helicase_DEAD_Q_motif	EIF4A1 EIF4A2 DDX5 DDX54	1.13e-06	37	40	4	IPR014014
Domain	Q_MOTIF	EIF4A1 EIF4A2 DDX5 DDX54	1.13e-06	37	40	4	PS51195
Domain	Helicase_C	CHD3 EIF4A1 EIF4A2 DDX5 DDX54	3.15e-06	107	40	5	PF00271
Domain	HELICc	CHD3 EIF4A1 EIF4A2 DDX5 DDX54	3.15e-06	107	40	5	SM00490
Domain	Helicase_C	CHD3 EIF4A1 EIF4A2 DDX5 DDX54	3.30e-06	108	40	5	IPR001650
Domain	HELICASE_CTER	CHD3 EIF4A1 EIF4A2 DDX5 DDX54	3.45e-06	109	40	5	PS51194
Domain	HELICASE_ATP_BIND_1	CHD3 EIF4A1 EIF4A2 DDX5 DDX54	3.45e-06	109	40	5	PS51192
Domain	DEXDc	CHD3 EIF4A1 EIF4A2 DDX5 DDX54	3.45e-06	109	40	5	SM00487
Domain	Helicase_ATP-bd	CHD3 EIF4A1 EIF4A2 DDX5 DDX54	3.61e-06	110	40	5	IPR014001
Domain	EIF4A1/2	EIF4A1 EIF4A2	4.47e-06	2	40	2	IPR031258
Domain	DEAD	EIF4A1 EIF4A2 DDX5 DDX54	1.76e-05	73	40	4	PF00270
Domain	DEAD/DEAH_box_helicase_dom	EIF4A1 EIF4A2 DDX5 DDX54	1.76e-05	73	40	4	IPR011545
Domain	AT_hook	PRR12 KMT2C AHDC1	2.57e-05	27	40	3	SM00384
Domain	AT_hook_DNA-bd_motif	PRR12 KMT2C AHDC1	2.57e-05	27	40	3	IPR017956
Domain	P-loop_NTPase	MAGI3 CHD3 UPF1 EIF4A1 EIF4A2 DDX5 KIF1C DDX54	3.68e-04	848	40	8	IPR027417
Domain	AT_hook	PRR12 KMT2C	5.27e-04	16	40	2	PF02178
Domain	LSM_dom	LSM14A SNRPD1	1.01e-03	22	40	2	IPR010920
Domain	HMGI/Y_DNA-bd_CS	PRR12 KMT2C	2.00e-03	31	40	2	IPR000637
Domain	SET	KMT2C PRDM8	4.36e-03	46	40	2	SM00317
Domain	-	CHD3 UPF1 EIF4A1 EIF4A2 DDX5 DDX54	4.79e-03	746	40	6	3.40.50.300
Domain	SET_dom	KMT2C PRDM8	5.13e-03	50	40	2	IPR001214
Domain	SET	KMT2C PRDM8	5.13e-03	50	40	2	PS50280
Pathway	REACTOME_METABOLISM_OF_RNA	UPF1 SNRPD1 CHTOP EIF4A1 EIF4A2 DDX5 RPS9 FTSJ3	3.92e-05	612	31	8	MM15547
Pathway	WP_MRNA_PROCESSING	COL4A3 NOP9 SNRPD1 CD2BP2 EIF4A2 DDX5 RPS9	4.42e-05	451	31	7	MM15946
Pathway	BIOCARTA_IRES_PATHWAY	EIF4A1 EIF4A2	6.98e-05	6	31	2	MM1550
Pathway	BIOCARTA_IRES_PATHWAY	EIF4A1 EIF4A2	9.76e-05	7	31	2	M22028
Pathway	REACTOME_METABOLISM_OF_RNA	UPF1 SNRPD1 CHTOP EIF4A1 EIF4A2 DDX5 RPS9 FTSJ3	1.28e-04	724	31	8	M16843
Pathway	REACTOME_TRANSLATION	MRPL41 MRPL15 EIF4A1 EIF4A2 RPS9	1.36e-04	231	31	5	MM15420
Pathway	BIOCARTA_AKAP95_PATHWAY	AKAP8 DDX5	2.08e-04	10	31	2	MM1344
Pathway	BIOCARTA_AKAP95_PATHWAY	AKAP8 DDX5	2.54e-04	11	31	2	M5731
Pathway	REACTOME_ACTIVATION_OF_THE_MRNA_UPON_BINDING_OF_THE_CAP_BINDING_COMPLEX_AND_EIFS_AND_SUBSEQUENT_BINDING_TO_43S	EIF4A1 EIF4A2 RPS9	3.03e-04	60	31	3	M721
Pathway	REACTOME_Z_DECAY_DEGRADATION_OF_MATERNAL_MRNAS_BY_ZYGOTICALLY_EXPRESSED_FACTORS	EIF4A1 EIF4A2	3.05e-04	12	31	2	M48027
Pathway	REACTOME_ACTIVATION_OF_THE_MRNA_UPON_BINDING_OF_THE_CAP_BINDING_COMPLEX_AND_EIFS_AND_SUBSEQUENT_BINDING_TO_43S	EIF4A1 EIF4A2 RPS9	3.84e-04	65	31	3	MM15416
Pathway	REACTOME_TRANSLATION	MRPL41 MRPL15 EIF4A1 EIF4A2 RPS9	4.22e-04	295	31	5	M8229
Pathway	BIOCARTA_EIF_PATHWAY	EIF4A1 EIF4A2	5.51e-04	16	31	2	M7721
Pathway	BIOCARTA_MTOR_PATHWAY	EIF4A1 EIF4A2	8.68e-04	20	31	2	MM1437
Pathway	BIOCARTA_MTOR_PATHWAY	EIF4A1 EIF4A2	1.05e-03	22	31	2	M16563
Pathway	BIOCARTA_EIF4_PATHWAY	EIF4A1 EIF4A2	1.15e-03	23	31	2	MM1470
Pathway	REACTOME_DEADENYLATION_OF_MRNA	EIF4A1 EIF4A2	1.25e-03	24	31	2	MM15090
Pathway	BIOCARTA_EIF4_PATHWAY	EIF4A1 EIF4A2	1.25e-03	24	31	2	M4791
Pathway	REACTOME_DEADENYLATION_OF_MRNA	EIF4A1 EIF4A2	1.36e-03	25	31	2	M13492
Pathway	REACTOME_ISG15_ANTIVIRAL_MECHANISM	EIF4A1 EIF4A2	1.83e-03	29	31	2	MM17065
Pathway	REACTOME_NON_INTEGRIN_MEMBRANE_ECM_INTERACTIONS	COL4A3 COL11A2	2.23e-03	32	31	2	MM14924
Pathway	REACTOME_EUKARYOTIC_TRANSLATION_INITIATION	EIF4A1 EIF4A2 RPS9	2.27e-03	120	31	3	M27686
Pathway	REACTOME_M_DECAY_DEGRADATION_OF_MATERNAL_MRNAS_BY_MATERNALLY_STORED_FACTORS	EIF4A1 EIF4A2	2.37e-03	33	31	2	M48026
Pathway	REACTOME_EUKARYOTIC_TRANSLATION_INITIATION	EIF4A1 EIF4A2 RPS9	2.44e-03	123	31	3	MM15415
Pathway	WP_EFFECT_OF_PROGERIN_ON_GENES_INVOLVED_IN_PROGERIA	SREBF1 CHD3	2.97e-03	37	31	2	M39756
Pubmed	Combinatorial targeting of a chromatin complex comprising Dot1L, menin and the tyrosine kinase BAZ1B reveals a new therapeutic vulnerability of endocrine therapy-resistant breast cancer.	PRR12 LSM14A NOP9 CHD3 UPF1 AKAP8 SNRPD1 PRRC2A AHDC1 CHTOP EIF4A1 CD2BP2 DDX5 RPS9 DDX54 FTSJ3	7.78e-16	847	41	16	35850772
Pubmed	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.	MRPL41 LSM14A NOP9 UPF1 AKAP8 MRPL15 SNRPD1 PRRC2A CHTOP EIF4A1 EIF4A2 DDX5 KIF1C DDX54 FTSJ3	9.69e-15	807	41	15	22681889
Pubmed	The E3 ubiquitin ligase HECTD1 contributes to cell proliferation through an effect on mitosis.	LSM14A NOP9 CHD3 UPF1 AKAP8 PRRC2A CHTOP EIF4A1 CD2BP2 DDX5 RPS9 DDX54 FTSJ3	2.31e-12	759	41	13	35915203
Pubmed	RNA-binding proteins with basic-acidic dipeptide (BAD) domains self-assemble and aggregate in Alzheimer's disease.	MRPL41 UPF1 AKAP8 MRPL15 SNRPD1 PRRC2A CHTOP CD2BP2 DDX5 RPS9 DDX54 FTSJ3	2.31e-11	713	41	12	29802200
Pubmed	Identification of proteins associated with ligand-activated estrogen receptor α in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS.	UPF1 AKAP8 SNRPD1 EIF4A1 DDX5 RPS9 DDX54 FTSJ3	4.23e-10	245	41	8	21182205
Pubmed	Identification of a USP9X Substrate NFX1-123 by SILAC-Based Quantitative Proteomics.	MRPL41 CHD3 UPF1 SNRPD1 PRRC2A CD2BP2 DDX5 RPS9 FTSJ3	5.70e-10	384	41	9	31059266
Pubmed	Characterizing ZC3H18, a Multi-domain Protein at the Interface of RNA Production and Destruction Decisions.	MRPL41 LSM14A UPF1 SNRPD1 PRRC2A CHTOP CD2BP2 DDX5 RPS9 DDX54 FTSJ3	5.84e-10	731	41	11	29298432
Pubmed	CHD3 and CHD4 form distinct NuRD complexes with different yet overlapping functionality.	CHD3 AKAP8 SNRPD1 CHTOP EIF4A1 CD2BP2 DDX5 RPS9 DDX54 FTSJ3	1.63e-09	605	41	10	28977666
Pubmed	H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.	SREBF1 PRR12 KMT2C NOP9 CHD3 AKAP8 SNRPD1 AHDC1 CHTOP CD2BP2 DDX5 DDX54 FTSJ3	1.65e-09	1294	41	13	30804502
Pubmed	SMYD3 Impedes Small Cell Lung Cancer Sensitivity to Alkylation Damage through RNF113A Methylation-Phosphorylation Cross-talk.	LSM14A CHD3 UPF1 AKAP8 PRRC2A CHTOP DDX5 RPS9 DDX54 FTSJ3	3.47e-09	655	41	10	35819319
Pubmed	The HIV-1 Tat protein recruits a ubiquitin ligase to reorganize the 7SK snRNP for transcriptional activation.	MRPL41 LSM14A CHD3 MRPL15 SNRPD1 CHTOP EIF4A1 CD2BP2 EIF4A2 DDX5 RPS9 FTSJ3	5.41e-09	1153	41	12	29845934
Pubmed	Targeting USP10 induces degradation of oncogenic ANLN in esophageal squamous cell carcinoma.	LSM14A UPF1 AKAP8 MRPL15 SNRPD1 CHTOP EIF4A1 CD2BP2 DDX5 RPS9 DDX54 FTSJ3	1.41e-08	1257	41	12	36526897
Pubmed	Therapeutic targeting of the USP2-E2F4 axis inhibits autophagic machinery essential for zinc homeostasis in cancer progression.	MRPL41 LSM14A NOP9 UPF1 AKAP8 SNRPD1 CD2BP2 FTSJ3	2.07e-08	403	41	8	35253629
Pubmed	Cell cycle-dependent phosphorylation regulates RECQL4 pathway choice and ubiquitination in DNA double-strand break repair.	MRPL41 LSM14A CHD3 UPF1 AKAP8 MRPL15 SNRPD1 PRRC2A CHTOP EIF4A1 DDX5 RPS9	2.74e-08	1335	41	12	29229926
Pubmed	RioK1, a new interactor of protein arginine methyltransferase 5 (PRMT5), competes with pICln for binding and modulates PRMT5 complex composition and substrate specificity.	CHD3 UPF1 SNRPD1 EIF4A1 DDX5 RPS9 DDX54 FTSJ3	3.13e-08	425	41	8	21081503
Pubmed	PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα.	PRR12 KMT2C LSM14A CHD3 UPF1 SNRPD1 PRRC2A AHDC1 CHTOP EIF4A1 DDX5	4.10e-08	1103	41	11	34189442
Pubmed	Human transcription factor protein interaction networks.	PRR12 KMT2C MRPL41 LSM14A CHD3 UPF1 AKAP8 MRPL15 PRRC2A CD2BP2 DDX54 FTSJ3	5.77e-08	1429	41	12	35140242
Pubmed	Hdac4 Interactions in Huntington's Disease Viewed Through the Prism of Multiomics.	PRR12 CACNA1E MAGI3 LSM14A UPF1 SNRPD1 PRRC2A DDX5	7.35e-08	475	41	8	31040226
Pubmed	PTPN14 regulates Roquin2 stability by tyrosine dephosphorylation.	MRPL41 NOP9 UPF1 AKAP8 MRPL15 SNRPD1 PRRC2A EIF4A1 DDX54	7.74e-08	678	41	9	30209976
Pubmed	Anticancer sulfonamides target splicing by inducing RBM39 degradation via recruitment to DCAF15.	CHD3 UPF1 AKAP8 SNRPD1 PRRC2A CHTOP EIF4A1 DDX5 RPS9	1.20e-07	714	41	9	28302793
Pubmed	Ubiquitin-Independent Disassembly by a p97 AAA-ATPase Complex Drives PP1 Holoenzyme Formation.	PRR12 UPF1 CHTOP PPP1R15B DDX5 RPS9 FTSJ3	2.03e-07	361	41	7	30344098
Pubmed	Identifying biological pathways that underlie primordial short stature using network analysis.	NOP9 CHD3 AKAP8 SNRPD1 CHTOP EIF4A1 DDX5 RPS9 DDX54 FTSJ3	2.29e-07	1024	41	10	24711643
Pubmed	MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons.	MRPL41 NOP9 UPF1 AKAP8 SNRPD1 AHDC1 EIF4A1 CD2BP2 DDX5 RPS9	3.80e-07	1082	41	10	38697112
Pubmed	Assembly of the U5 snRNP component PRPF8 is controlled by the HSP90/R2TP chaperones.	MRPL41 UPF1 SNRPD1 PRRC2A EIF4A1 CD2BP2 DDX5 RPS9 KIF1C DDX54 FTSJ3	4.98e-07	1415	41	11	28515276
Pubmed	WWP2 ubiquitylates RNA polymerase II for DNA-PK-dependent transcription arrest and repair at DNA breaks.	UPF1 PRRC2A AHDC1 CHTOP EIF4A1 DDX5 RPS9 FTSJ3	5.22e-07	615	41	8	31048545
Pubmed	The histone acetyltransferase KAT6A is recruited to unmethylated CpG islands via a DNA binding winged helix domain.	MRPL41 CHD3 MRPL15 DDX5 RPS9 DDX54 FTSJ3	5.36e-07	417	41	7	36537216
Pubmed	SND1 binds SARS-CoV-2 negative-sense RNA and promotes viral RNA synthesis through NSP9.	LSM14A UPF1 AKAP8 PRRC2A DDX5 KIF1C	5.69e-07	258	41	6	37794589
Pubmed	Loss of TRIM31 promotes breast cancer progression through regulating K48- and K63-linked ubiquitination of p53.	UPF1 AKAP8 SNRPD1 EIF4A2 DDX5 RPS9 FTSJ3	5.71e-07	421	41	7	34650049
Pubmed	Circular RNA circPVT1 promotes nasopharyngeal carcinoma metastasis via the β-TrCP/c-Myc/SRSF1 positive feedback loop.	UPF1 AKAP8 EIF4A1 DDX5 RPS9 FTSJ3	5.95e-07	260	41	6	36199071
Pubmed	Targeted and Interactome Proteomics Revealed the Role of PHD2 in Regulating BRD4 Proline Hydroxylation.	UPF1 PRRC2A EIF4A1 CD2BP2 DDX5 RPS9 FTSJ3	7.79e-07	441	41	7	31239290
Pubmed	Acetylation of ELF5 suppresses breast cancer progression by promoting its degradation and targeting CCND1.	ZNF469 NOP9 CHD3 UPF1 AKAP8 CHTOP DDX5 DDX54	8.19e-07	653	41	8	33742100
Pubmed	A-kinase-anchoring protein AKAP95 is targeted to the nuclear matrix and associates with p68 RNA helicase.	AKAP8 DDX5	1.36e-06	2	41	2	11279182
Pubmed	Prdm8 regulates pMN progenitor specification for motor neuron and oligodendrocyte fates by modulating the Shh signaling response.	SHH PRDM8	1.36e-06	2	41	2	32680935
Pubmed	A cellular response linking eIF4AI activity to eIF4AII transcription.	EIF4A1 EIF4A2	1.36e-06	2	41	2	22589333
Pubmed	Translational dysregulation in cancer: eIF4A isoforms and sequence determinants of eIF4A dependence.	EIF4A1 EIF4A2	1.36e-06	2	41	2	26614665
Pubmed	Differential expression of the murine eukaryotic translation initiation factor isogenes eIF4A(I) and eIF4A(II) is dependent upon cellular growth status.	EIF4A1 EIF4A2	1.36e-06	2	41	2	9015395
Pubmed	Regulation of eukaryotic initiation factor 4AII by MyoD during murine myogenic cell differentiation.	EIF4A1 EIF4A2	1.36e-06	2	41	2	24466343
Pubmed	The mouse protein synthesis initiation factor 4A gene family includes two related functional genes which are differentially expressed.	EIF4A1 EIF4A2	1.36e-06	2	41	2	3046931
Pubmed	R2TP/Prefoldin-like component RUVBL1/RUVBL2 directly interacts with ZNHIT2 to regulate assembly of U5 small nuclear ribonucleoprotein.	UPF1 SNRPD1 CD2BP2 DDX5 KIF1C FTSJ3	1.37e-06	300	41	6	28561026
Pubmed	A bead-based approach for large-scale identification of in vitro kinase substrates.	LSM14A AKAP8 CD2BP2 DDX54 FTSJ3	1.39e-06	163	41	5	22113938
Pubmed	In silico APC/C substrate discovery reveals cell cycle-dependent degradation of UHRF1 and other chromatin regulators.	MRPL41 UPF1 AKAP8 PRRC2A EIF4A1 CD2BP2 DDX5 RPS9 DDX54	1.56e-06	971	41	9	33306668
Pubmed	Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins.	MRPL41 NOP9 AKAP8 SNRPD1 EIF4A1 CD2BP2 EIF4A2 FTSJ3	1.75e-06	723	41	8	34133714
Pubmed	HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation.	LSM14A CHD3 UPF1 AKAP8 SNRPD1 PRRC2A CHTOP TRIM3 CD2BP2 FTSJ3	3.22e-06	1371	41	10	36244648
Pubmed	Arginine methylation and ubiquitylation crosstalk controls DNA end-resection and homologous recombination repair.	LSM14A UPF1 AKAP8 PRRC2A CHTOP EIF4A1 DDX5	3.40e-06	551	41	7	34728620
Pubmed	SPATA2 Links CYLD to LUBAC, Activates CYLD, and Controls LUBAC Signaling.	UPF1 MRPL15 SNRPD1 PRRC2A EIF4A2 DDX5 RPS9	3.69e-06	558	41	7	27591049
Pubmed	Phosphorylated p68 RNA helicase activates Snail1 transcription by promoting HDAC1 dissociation from the Snail1 promoter.	CHD3 DDX5	4.06e-06	3	41	2	20676135
Pubmed	Direct interaction between hnRNP-M and CDC5L/PLRG1 proteins affects alternative splice site choice.	CHD3 UPF1 AKAP8 SNRPD1 EIF4A1 EIF4A2 DDX5	4.87e-06	582	41	7	20467437
Pubmed	The intracellular interactome of tetraspanin-enriched microdomains reveals their function as sorting machineries toward exosomes.	SNRPD1 EIF4A1 EIF4A2 DDX5 RPS9	5.03e-06	212	41	5	23463506
Pubmed	Deubiquitinating enzyme PSMD14 promotes tumor metastasis through stabilizing SNAIL in human esophageal squamous cell carcinoma.	LSM14A UPF1 SNRPD1 EIF4A1 DDX5 RPS9	5.57e-06	383	41	6	29331416
Pubmed	Two-Dimensional Fractionation Method for Proteome-Wide Cross-Linking Mass Spectrometry Analysis.	CHD3 MRPL15 SNRPD1 CHTOP EIF4A1 EIF4A2 DDX5 RPS9	5.61e-06	847	41	8	35235311
Pubmed	Tumor suppressor BAP1 nuclear import is governed by transportin-1.	UPF1 AKAP8 SNRPD1 PRRC2A EIF4A1 EIF4A2 DDX5 RPS9 FTSJ3	6.14e-06	1149	41	9	35446349
Pubmed	Systematic analysis of human protein complexes identifies chromosome segregation proteins.	LSM14A AKAP8 SNRPD1 CHTOP EIF4A1 CD2BP2 EIF4A2 DDX5 KIF1C	6.40e-06	1155	41	9	20360068
Pubmed	BioID-based Identification of Skp Cullin F-box (SCF)β-TrCP1/2 E3 Ligase Substrates.	MRPL41 UPF1 MRPL15 PRRC2A PPP1R15B	6.86e-06	226	41	5	25900982
Pubmed	The p46 subunit of eukaryotic initiation factor (eIF)-4F exchanges with eIF-4A.	EIF4A1 EIF4A2	8.12e-06	4	41	2	8449919
Pubmed	Novel Upf2p orthologues suggest a functional link between translation initiation and nonsense surveillance complexes.	UPF1 EIF4A1	8.12e-06	4	41	2	11073994
Pubmed	mRNA helicases: the tacticians of translational control.	EIF4A1 EIF4A2	8.12e-06	4	41	2	21427765
Pubmed	Eukaryotic initiation factors 4A (eIF4A) and 4G (eIF4G) mutually interact in a 1:1 ratio in vivo.	EIF4A1 EIF4A2	8.12e-06	4	41	2	11408474
Pubmed	The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells.	UPF1 SNRPD1 CHTOP EIF4A1 DDX5	9.00e-06	239	41	5	26641092
Pubmed	Suppression of ACE2 SUMOylation protects against SARS-CoV-2 infection through TOLLIP-mediated selective autophagy.	CHD3 UPF1 SNRPD1 CHTOP DDX5 RPS9 DDX54	9.12e-06	641	41	7	36057605
Pubmed	Nucleolar proteome dynamics.	NOP9 CHD3 DDX5 RPS9 DDX54 FTSJ3	9.29e-06	419	41	6	15635413
Pubmed	Characterization of staufen1 ribonucleoproteins by mass spectrometry and biochemical analyses reveal the presence of diverse host proteins associated with human immunodeficiency virus type 1.	UPF1 EIF4A1 DDX5 RPS9 KIF1C	9.37e-06	241	41	5	23125841
Pubmed	Interactome analyses revealed that the U1 snRNP machinery overlaps extensively with the RNAP II machinery and contains multiple ALS/SMA-causative proteins.	AKAP8 SNRPD1 PRRC2A CD2BP2 DDX5	9.95e-06	244	41	5	29884807
Pubmed	TRIM28-mediated nucleocapsid protein SUMOylation enhances SARS-CoV-2 virulence.	SNRPD1 CHTOP EIF4A1 DDX5 RPS9 FTSJ3	1.08e-05	430	41	6	38172120
Pubmed	N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective.	LSM14A CHD3 UPF1 PRRC2A CHTOP DDX5 RPS9 FTSJ3	1.14e-05	934	41	8	33916271
Pubmed	Genetic and Proteomic Interrogation of Lower Confidence Candidate Genes Reveals Signaling Networks in β-Catenin-Active Cancers.	UPF1 PRRC2A AHDC1 CHTOP EIF4A1 DDX5 RPS9 DDX54 FTSJ3	1.18e-05	1247	41	9	27684187
Pubmed	TBK1 phosphorylation activates LIR-dependent degradation of the inflammation repressor TNIP1.	UPF1 MRPL15 SNRPD1 EIF4A1 DDX5 RPS9 DDX54 FTSJ3	1.28e-05	949	41	8	36574265
Pubmed	SNIP1 Recruits TET2 to Regulate c-MYC Target Genes and Cellular DNA Damage Response.	MRPL15 SNRPD1 RPS9 DDX54 FTSJ3	1.33e-05	259	41	5	30404004
Pubmed	Mouse erythroid cells express multiple putative RNA helicase genes exhibiting high sequence conservation from yeast to mammals.	EIF4A1 DDX5	1.35e-05	5	41	2	8144024
Pubmed	Regulation of translation initiation in eukaryotes: mechanisms and biological targets.	EIF4A1 EIF4A2	1.35e-05	5	41	2	19239892
Pubmed	Global Hypertranscription in the Mouse Embryonic Germline.	EIF4A2 RPS9	1.35e-05	5	41	2	28591571
Pubmed	A catalogue of putative HIV-1 protease host cell substrates.	UPF1 AKAP8 EIF4A2 DDX5	1.41e-05	124	41	4	22944692
Pubmed	Comparative Application of BioID and TurboID for Protein-Proximity Biotinylation.	PRR12 KMT2C AKAP8 SNRPD1 AHDC1 DDX5	1.52e-05	457	41	6	32344865
Pubmed	Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing.	CHD3 SNRPD1 DDX5 RPS9 FTSJ3	1.65e-05	271	41	5	32433965
Pubmed	Unbiased Profiling of the Human Proinsulin Biosynthetic Interaction Network Reveals a Role for Peroxiredoxin 4 in Proinsulin Folding.	MRPL41 UPF1 PRRC2A TRIM3 DDX5 RPS9	1.65e-05	464	41	6	32457219
Pubmed	Systematic proteomics of endogenous human cohesin reveals an interaction with diverse splicing factors and RNA-binding proteins required for mitotic progression.	PRR12 AKAP8 CD2BP2 EIF4A2 DDX5	1.68e-05	272	41	5	31010829
Pubmed	mTORC1 activity regulates post-translational modifications of glycine decarboxylase to modulate glycine metabolism and tumorigenesis.	UPF1 AKAP8 PRRC2A EIF4A1 DDX5	1.74e-05	274	41	5	34244482
Pubmed	BPA modulates the WDR5/TET2 complex to regulate ERβ expression in eutopic endometrium and drives the development of endometriosis.	KMT2C UPF1 SNRPD1 PRRC2A CHTOP DDX5 DDX54	1.78e-05	711	41	7	33022573
Pubmed	LINKIN, a new transmembrane protein necessary for cell adhesion.	LSM14A AKAP8 SNRPD1 EIF4A2 DDX5 RPS9	2.00e-05	480	41	6	25437307
Pubmed	Prohibitin 1 regulates tumor cell apoptosis via the interaction with X-linked inhibitor of apoptosis protein.	MRPL41 UPF1 SNRPD1 PRRC2A EIF4A1 DDX5 RPS9	2.02e-05	725	41	7	27025967
Pubmed	The functional genes for protein synthesis initiation factor 4AI and 4AII map to mouse chromosomes 11 and 16.	EIF4A1 EIF4A2	2.03e-05	6	41	2	8439732
Pubmed	Competitive binding of E3 ligases TRIM26 and WWP2 controls SOX2 in glioblastoma.	MRPL41 LSM14A CHD3 MRPL15 AHDC1 CHTOP EIF4A1	2.14e-05	732	41	7	34732716
Pubmed	Mitotic phosphorylation of eukaryotic initiation factor 4G1 (eIF4G1) at Ser1232 by Cdk1:cyclin B inhibits eIF4A helicase complex binding with RNA.	EIF4A1 EIF4A2 RPS9	2.70e-05	49	41	3	24248602
Pubmed	Role of CDMP-1 in skeletal morphogenesis: promotion of mesenchymal cell recruitment and chondrocyte differentiation.	SHH COL11A2	2.84e-05	7	41	2	9885252
Pubmed	ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure.	LSM14A UPF1 PRRC2A EIF4A1 FTSJ3	3.39e-05	315	41	5	26777405
Pubmed	Gain of Additional BIRC3 Protein Functions through 3'-UTR-Mediated Protein Complex Formation.	NOP9 UPF1 SNRPD1 CHTOP EIF4A1 DDX5 RPS9 DDX54 FTSJ3	3.39e-05	1425	41	9	30948266
Pubmed	Transcript-selective translational silencing by gamma interferon is directed by a novel structural element in the ceruloplasmin mRNA 3' untranslated region.	EIF4A1 EIF4A2 RPS9	3.42e-05	53	41	3	12588972
Pubmed	Targeted Disruption of Mouse Dip2B Leads to Abnormal Lung Development and Prenatal Lethality.	COL4A3 SHH TGFBR3L	3.42e-05	53	41	3	33153107
Pubmed	Analysis of proteins copurifying with the CD4/lck complex using one-dimensional polyacrylamide gel electrophoresis and mass spectrometry: comparison with affinity-tag based protein detection and evaluation of different solubilization methods.	EIF4A2 DDX5 RPS9	3.42e-05	53	41	3	15047060
Pubmed	A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape.	NOP9 UPF1 AKAP8 MRPL15 SNRPD1 PRRC2A CHTOP EIF4A1 DDX54	3.68e-05	1440	41	9	30833792
Pubmed	In-Depth In Vivo Crosslinking in Minutes by a Compact, Membrane-Permeable, and Alkynyl-Enrichable Crosslinker.	CACNA1E MAGI3 RGS14 LSM14A PRDM8 CHD3 EIF4A1 EIF4A2 DDX5	3.72e-05	1442	41	9	35575683
Pubmed	A DDX6-CNOT1 complex and W-binding pockets in CNOT9 reveal direct links between miRNA target recognition and silencing.	EIF4A1 EIF4A2	3.78e-05	8	41	2	24768540
Pubmed	Discoidin domain receptor 1 functions in axon extension of cerebellar granule neurons.	COL4A3 SHH	3.78e-05	8	41	2	10970885
Pubmed	The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation.	UPF1 AKAP8 RPS9	3.82e-05	55	41	3	31640799
Pubmed	Loss of ER retention motif of AGR2 can impact mTORC signaling and promote cancer metastasis.	COL4A3 UPF1 SNRPD1 CHTOP EIF4A1 DDX5 RPS9	3.99e-05	807	41	7	30575818
Pubmed	A protein-RNA interaction atlas of the ribosome biogenesis factor AATF.	UPF1 PRRC2A CHTOP RPS9	4.02e-05	162	41	4	31363146
Pubmed	The necdin interactome: evaluating the effects of amino acid substitutions and cell stress using proximity-dependent biotinylation (BioID) and mass spectrometry.	SNRPD1 EIF4A1 DDX5 RPS9 FTSJ3	4.22e-05	330	41	5	32529326
Pubmed	Identification of SUMO Binding Proteins Enriched after Covalent Photo-Cross-Linking.	CHD3 UPF1 EIF4A1 EIF4A2 DDX5	4.35e-05	332	41	5	32786267
Pubmed	Transferrin Receptor Protein 1 Cooperates with mGluR2 To Mediate the Internalization of Rabies Virus and SARS-CoV-2.	KMT2C MRPL15 PRRC2A EIF4A1 DDX54	4.41e-05	333	41	5	36779763
Pubmed	Friend of Prmt1, a novel chromatin target of protein arginine methyltransferases.	LSM14A CHTOP	4.86e-05	9	41	2	19858291
Pubmed	Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis.	AKAP8 SNRPD1 RPS9 FTSJ3	5.07e-05	172	41	4	26336360
Interaction	DOT1L interactions	LSM14A NOP9 CHD3 UPF1 AKAP8 SNRPD1 PRRC2A AHDC1 CHTOP EIF4A1 CD2BP2 DDX5 RPS9 DDX54 FTSJ3	1.52e-11	807	40	15	int:DOT1L
Interaction	HECTD1 interactions	SREBF1 LSM14A NOP9 CHD3 UPF1 AKAP8 PRRC2A CHTOP EIF4A1 CD2BP2 EIF4A2 DDX5 RPS9 DDX54 FTSJ3	2.45e-10	984	40	15	int:HECTD1
Interaction	MEN1 interactions	PRR12 KMT2C NOP9 CHD3 UPF1 AKAP8 SNRPD1 PRRC2A AHDC1 CHTOP EIF4A1 CD2BP2 DDX5 DDX54 FTSJ3	4.56e-10	1029	40	15	int:MEN1
Interaction	SNRNP70 interactions	MRPL41 CHD3 UPF1 AKAP8 MRPL15 SNRPD1 PRRC2A CHTOP CD2BP2 DDX5 RPS9 DDX54 FTSJ3	2.91e-08	984	40	13	int:SNRNP70
Interaction	CEBPA interactions	PRR12 KMT2C LSM14A CHD3 UPF1 SNRPD1 PRRC2A AHDC1 CHTOP EIF4A1 DDX5 RPS9 DDX54 FTSJ3	5.57e-08	1245	40	14	int:CEBPA
Interaction	FMR1 interactions	MAGI3 LSM14A CHD3 UPF1 AKAP8 PRRC2A CHTOP TRIM3 DDX5 RPS9	6.74e-08	536	40	10	int:FMR1
Interaction	ZC3H18 interactions	MRPL41 LSM14A CHD3 UPF1 SNRPD1 PRRC2A CHTOP CD2BP2 DDX5 RPS9 DDX54 FTSJ3	7.75e-08	877	40	12	int:ZC3H18
Interaction	KLF15 interactions	PRR12 KMT2C MRPL41 LSM14A AKAP8 MRPL15 PRRC2A FTSJ3	8.61e-08	290	40	8	int:KLF15
Interaction	NFX1 interactions	MRPL41 CHD3 UPF1 SNRPD1 PRRC2A CD2BP2 DDX5 RPS9 FTSJ3	2.53e-07	466	40	9	int:NFX1
Interaction	RBM8A interactions	NOP9 UPF1 PRRC2A CHTOP EIF4A1 EIF4A2 DDX5 RPS9 FTSJ3	2.87e-07	473	40	9	int:RBM8A
Interaction	RPL19 interactions	MRPL41 CHD3 MRPL15 PRRC2A EIF4A1 DDX5 TCEAL5 RPS9 DDX54 FTSJ3	3.39e-07	638	40	10	int:RPL19
Interaction	RC3H1 interactions	MRPL41 LSM14A NOP9 UPF1 MRPL15 SNRPD1 PRRC2A EIF4A1 CD2BP2 DDX54	5.83e-07	677	40	10	int:RC3H1
Interaction	RNF113A interactions	LSM14A CHD3 UPF1 AKAP8 PRRC2A CHTOP DDX5 RPS9 DDX54 FTSJ3	7.12e-07	692	40	10	int:RNF113A
Interaction	PABPC1 interactions	KMT2C LSM14A CHD3 UPF1 SNRPD1 PRRC2A EIF4A1 EIF4A2 DDX5 RPS9	7.80e-07	699	40	10	int:PABPC1
Interaction	ILF3 interactions	RGS14 MRPL41 LSM14A CHD3 UPF1 MRPL15 SNRPD1 DDX5 RPS9 DDX54 FTSJ3	8.92e-07	896	40	11	int:ILF3
Interaction	HEXIM1 interactions	MRPL41 LSM14A CHD3 SNRPD1 CHTOP EIF4A1 CD2BP2 EIF4A2 DDX5 RPS9 FTSJ3	1.07e-06	913	40	11	int:HEXIM1
Interaction	HNRNPA1 interactions	LSM14A CHD3 UPF1 AKAP8 MRPL15 SNRPD1 PRRC2A CHTOP EIF4A2 DDX5 RPS9	1.50e-06	945	40	11	int:HNRNPA1
Interaction	CHD3 interactions	CHD3 AKAP8 SNRPD1 CHTOP EIF4A1 CD2BP2 DDX5 RPS9 DDX54 FTSJ3	1.61e-06	757	40	10	int:CHD3
Interaction	SRP9 interactions	UPF1 SNRPD1 PRRC2A EIF4A1 EIF4A2 RPS9 DDX54 FTSJ3	1.61e-06	427	40	8	int:SRP9
Interaction	EIF4ENIF1 interactions	LSM14A NOP9 UPF1 PRRC2A EIF4A1 EIF4A2 FTSJ3	1.85e-06	300	40	7	int:EIF4ENIF1
Interaction	BTRC interactions	MRPL41 UPF1 AKAP8 MRPL15 PRRC2A EIF4A1 PPP1R15B DDX5 RPS9 FTSJ3	1.98e-06	775	40	10	int:BTRC
Interaction	SOX2 interactions	PRR12 KMT2C MRPL41 LSM14A CHD3 UPF1 AKAP8 MRPL15 AHDC1 CHTOP EIF4A1 DDX5 FTSJ3	2.02e-06	1422	40	13	int:SOX2
Interaction	FBL interactions	LSM14A CHD3 UPF1 PRRC2A AHDC1 DDX5 RPS9 DDX54 FTSJ3	3.47e-06	639	40	9	int:FBL
Interaction	RBM42 interactions	SNRPD1 PRRC2A EIF4A1 CD2BP2 EIF4A2 DDX5 RPS9	3.54e-06	331	40	7	int:RBM42
Interaction	U2AF2 interactions	CHD3 UPF1 MRPL15 SNRPD1 CHTOP TRIM3 EIF4A1 DDX5 FTSJ3	4.04e-06	651	40	9	int:U2AF2
Interaction	OASL interactions	NOP9 UPF1 AKAP8 CHTOP DDX54 FTSJ3	4.81e-06	223	40	6	int:OASL
Interaction	RC3H2 interactions	MRPL41 LSM14A NOP9 UPF1 AKAP8 SNRPD1 PRRC2A EIF4A1 DDX54	4.92e-06	667	40	9	int:RC3H2
Interaction	EIF4A3 interactions	CHD3 UPF1 SNRPD1 CHTOP EIF4A1 EIF4A2 DDX5 RPS9	5.12e-06	499	40	8	int:EIF4A3
Interaction	EIF4A1 interactions	CHD3 UPF1 PRRC2A EIF4A1 EIF4A2 DDX5 KIF1C	5.61e-06	355	40	7	int:EIF4A1
Interaction	MECOM interactions	SREBF1 MAGI3 CHD3 UPF1 AKAP8 SNRPD1 FTSJ3	5.93e-06	358	40	7	int:MECOM
Interaction	PSPC1 interactions	UPF1 PRRC2A EIF4A1 CD2BP2 EIF4A2 DDX5 RPS9 FTSJ3	6.45e-06	515	40	8	int:PSPC1
Interaction	CAND1 interactions	MRPL41 UPF1 AKAP8 MRPL15 SNRPD1 PRRC2A EIF4A1 DDX5 RPS9 FTSJ3	7.07e-06	894	40	10	int:CAND1
Interaction	MYCN interactions	MRPL41 LSM14A UPF1 AKAP8 MRPL15 SNRPD1 PRRC2A CHTOP DDX5 RPS9 DDX54 FTSJ3	8.88e-06	1373	40	12	int:MYCN
Interaction	E2F4 interactions	MRPL41 LSM14A NOP9 UPF1 AKAP8 SNRPD1 CD2BP2 FTSJ3	9.11e-06	540	40	8	int:E2F4
Interaction	SYNCRIP interactions	RGS14 LSM14A CHD3 UPF1 SNRPD1 PRRC2A DDX5 RPS9 DDX54	9.23e-06	721	40	9	int:SYNCRIP
Interaction	RPS16 interactions	NOP9 CHD3 UPF1 PRRC2A EIF4A1 EIF4A2 DDX5 RPS9 FTSJ3	9.54e-06	724	40	9	int:RPS16
Interaction	PRRC2A interactions	LSM14A UPF1 MRPL15 PRRC2A EIF4A1 EIF4A2 DDX54	1.02e-05	389	40	7	int:PRRC2A
Interaction	PPP1CC interactions	PRR12 CHD3 UPF1 CHTOP CD2BP2 PPP1R15B DDX5 RPS9 FTSJ3	1.11e-05	738	40	9	int:PPP1CC
Interaction	RECQL4 interactions	MRPL41 LSM14A CHD3 UPF1 AKAP8 MRPL15 SNRPD1 PRRC2A CHTOP EIF4A1 DDX5 RPS9	1.18e-05	1412	40	12	int:RECQL4
Interaction	HDAC4 interactions	PRR12 CACNA1E MAGI3 LSM14A UPF1 SNRPD1 PRRC2A DDX5 KIF1C	1.19e-05	744	40	9	int:HDAC4
Interaction	RIOK1 interactions	CHD3 UPF1 CHTOP EIF4A1 DDX5 RPS9 DDX54 FTSJ3	1.22e-05	562	40	8	int:RIOK1
Interaction	CSNK2A1 interactions	LSM14A CHD3 UPF1 AKAP8 HAGHL CD2BP2 RPS9 KIF1C DDX54 FTSJ3	1.27e-05	956	40	10	int:CSNK2A1
Interaction	YBX1 interactions	MRPL41 LSM14A CHD3 UPF1 MRPL15 SNRPD1 RPS9 DDX54 FTSJ3	1.29e-05	752	40	9	int:YBX1
Interaction	UNK interactions	LSM14A UPF1 PRRC2A EIF4A1 PPP1R15B EIF4A2 DDX5	1.39e-05	408	40	7	int:UNK
Interaction	NPM1 interactions	RGS14 MRPL41 CHD3 SNRPD1 PRRC2A EIF4A1 EIF4A2 DDX5 RPS9 DDX54 FTSJ3	1.50e-05	1201	40	11	int:NPM1
Interaction	EFTUD2 interactions	MRPL41 CHD3 UPF1 SNRPD1 PRRC2A EIF4A1 CD2BP2 DDX5 RPS9 KIF1C DDX54 FTSJ3	1.53e-05	1449	40	12	int:EFTUD2
Interaction	ILF2 interactions	CHD3 UPF1 SNRPD1 EIF4A1 DDX5 RPS9 KIF1C FTSJ3	1.73e-05	590	40	8	int:ILF2
Interaction	TOP3B interactions	SREBF1 PRR12 KMT2C LSM14A UPF1 PRRC2A AHDC1 PRRT4 EIF4A1 CD2BP2 PPP1R15B EIF4A2	1.77e-05	1470	40	12	int:TOP3B
Interaction	CBX6 interactions	UPF1 MRPL15 AHDC1 CHTOP DDX54 FTSJ3	1.87e-05	283	40	6	int:CBX6
Interaction	AURKAIP1 interactions	MRPL41 CHD3 MRPL15 CHTOP DDX54 FTSJ3	1.91e-05	284	40	6	int:AURKAIP1
Interaction	EIF4A2 interactions	UPF1 PRRC2A EIF4A1 CD2BP2 EIF4A2	2.15e-05	171	40	5	int:EIF4A2
Interaction	C1QBP interactions	RGS14 MRPL41 LSM14A MRPL15 SNRPD1 PRRC2A CHTOP RPS9 DDX54	2.24e-05	806	40	9	int:C1QBP
Interaction	PABPC4 interactions	CHD3 PRRC2A TRIM3 EIF4A1 EIF4A2 DDX5 RPS9	2.32e-05	442	40	7	int:PABPC4
Interaction	RBM39 interactions	CHD3 UPF1 AKAP8 SNRPD1 PRRC2A CHTOP EIF4A1 CD2BP2 DDX5 RPS9	2.68e-05	1042	40	10	int:RBM39
Interaction	CD81 interactions	RGS14 SNRPD1 EIF4A1 EIF4A2 DDX5 RPS9	2.74e-05	303	40	6	int:CD81
Interaction	TRIM31 interactions	UPF1 AKAP8 SNRPD1 EIF4A2 DDX5 RPS9 FTSJ3	2.75e-05	454	40	7	int:TRIM31
Interaction	MECP2 interactions	MRPL41 NOP9 UPF1 AKAP8 SNRPD1 AHDC1 EIF4A1 CD2BP2 DDX5 RPS9 DDX54	2.85e-05	1287	40	11	int:MECP2
Interaction	G3BP1 interactions	LSM14A CHD3 UPF1 SNRPD1 PRRC2A EIF4A1 DDX5 RPS9 FTSJ3	2.96e-05	835	40	9	int:G3BP1
Interaction	WWP2 interactions	UPF1 GGN PRRC2A AHDC1 CHTOP EIF4A1 DDX5 RPS9 FTSJ3	3.10e-05	840	40	9	int:WWP2
Interaction	ATXN2 interactions	LSM14A UPF1 PRRC2A EIF4A1 EIF4A2 DDX5	3.23e-05	312	40	6	int:ATXN2
Interaction	SUZ12 interactions	SREBF1 CHD3 UPF1 SNRPD1 AHDC1 CHTOP EIF4A2 DDX5	3.24e-05	644	40	8	int:SUZ12
Interaction	RPS8 interactions	MRPL41 NOP9 CHD3 MRPL15 PRRC2A RPS9 DDX54 FTSJ3	3.42e-05	649	40	8	int:RPS8
Interaction	DDX3X interactions	LSM14A CHD3 UPF1 PRRC2A EIF4A1 EIF4A2 DDX5 RPS9	3.50e-05	651	40	8	int:DDX3X
Interaction	HDLBP interactions	CHD3 UPF1 AKAP8 SNRPD1 PRRC2A CHTOP TRIM3 CD2BP2 FTSJ3	3.57e-05	855	40	9	int:HDLBP
Interaction	CDC5L interactions	CHD3 UPF1 AKAP8 SNRPD1 EIF4A1 CD2BP2 EIF4A2 DDX5 FTSJ3	3.57e-05	855	40	9	int:CDC5L
Interaction	KLF5 interactions	SREBF1 PRR12 KMT2C LSM14A PRRC2A	4.03e-05	195	40	5	int:KLF5
Interaction	SMG1 interactions	LSM14A UPF1 PRRC2A EIF4A2	4.03e-05	97	40	4	int:SMG1
Interaction	RPS6 interactions	RGS14 LSM14A NOP9 CHD3 UPF1 EIF4A1 RPS9 DDX54 FTSJ3	4.23e-05	874	40	9	int:RPS6
Interaction	PRP4K interactions	SNRPD1 PRRC2A CHTOP CD2BP2 DDX5 KIF1C	4.35e-05	329	40	6	int:PRP4K
Interaction	ADARB1 interactions	CHD3 UPF1 SNRPD1 DDX5 RPS9 DDX54 FTSJ3	4.42e-05	489	40	7	int:ADARB1
Interaction	SRP72 interactions	CHD3 PRRC2A EIF4A1 RPS9 DDX54 FTSJ3	4.65e-05	333	40	6	int:SRP72
Interaction	EIF3B interactions	CHD3 UPF1 PRRC2A EIF4A1 EIF4A2 RPS9	4.97e-05	337	40	6	int:EIF3B
Interaction	RBM47 interactions	LSM14A NOP9 UPF1 MRPL15 PRRC2A	4.99e-05	204	40	5	int:RBM47
Interaction	MRPS30 interactions	MRPL41 LSM14A MRPL15 PRRC2A RPS9	5.47e-05	208	40	5	int:MRPS30
Interaction	EWSR1 interactions	SREBF1 PRR12 CHD3 UPF1 AKAP8 SNRPD1 PRRC2A CD2BP2 DDX5	5.60e-05	906	40	9	int:EWSR1
Interaction	IGF2BP3 interactions	LSM14A CHD3 UPF1 MRPL15 EIF4A1 DDX5 RPS9	5.62e-05	508	40	7	int:IGF2BP3
Interaction	KAT6A interactions	MRPL41 CHD3 MRPL15 DDX5 RPS9 DDX54 FTSJ3	5.76e-05	510	40	7	int:KAT6A
Interaction	TDRD3 interactions	LSM14A UPF1 PRRC2A EIF4A1 EIF4A2	5.99e-05	212	40	5	int:TDRD3
Interaction	SNRPB interactions	CHD3 UPF1 AKAP8 SNRPD1 CHTOP CD2BP2 DDX5	6.28e-05	517	40	7	int:SNRPB
Interaction	DDX21 interactions	CHD3 UPF1 AKAP8 CHTOP DDX5 RPS9 DDX54 FTSJ3	6.98e-05	718	40	8	int:DDX21
Interaction	CHD4 interactions	CHD3 AKAP8 CHTOP EIF4A1 CD2BP2 DDX5 RPS9 DDX54 FTSJ3	7.32e-05	938	40	9	int:CHD4
Interaction	MRPL2 interactions	MRPL41 MRPL15 RPS9 DDX54 FTSJ3	7.77e-05	224	40	5	int:MRPL2
Interaction	SMURF1 interactions	SREBF1 AKAP8 SNRPD1 DDX5 RPS9 DDX54 FTSJ3	8.64e-05	544	40	7	int:SMURF1
Interaction	AATF interactions	CHD3 UPF1 PRRC2A CHTOP RPS9 FTSJ3	9.10e-05	376	40	6	int:AATF
Interaction	CD2BP2 interactions	CHD3 SNRPD1 CD2BP2 EIF4A2 DDX5	9.17e-05	232	40	5	int:CD2BP2
Interaction	ZNF346 interactions	UPF1 MRPL15 RPS9 KIF1C DDX54 FTSJ3	9.23e-05	377	40	6	int:ZNF346
Interaction	PRC1 interactions	UPF1 AKAP8 SNRPD1 EIF4A1 EIF4A2 DDX5 RPS9 DDX54 FTSJ3	9.70e-05	973	40	9	int:PRC1
Interaction	FUS interactions	CHD3 UPF1 AKAP8 SNRPD1 PRRC2A EIF4A1 DDX5 RPS9	1.01e-04	757	40	8	int:FUS
Interaction	DRG1 interactions	PRRC2A EIF4A1 EIF4A2 RPS9 DDX54 FTSJ3	1.08e-04	388	40	6	int:DRG1
Interaction	DDX5 interactions	CHD3 UPF1 AKAP8 SNRPD1 EIF4A1 CD2BP2 DDX5	1.13e-04	568	40	7	int:DDX5
Interaction	SRSF1 interactions	CHD3 UPF1 SNRPD1 CD2BP2 DDX5 DDX54 FTSJ3	1.16e-04	570	40	7	int:SRSF1
Interaction	RPL17 interactions	CHD3 UPF1 MRPL15 EIF4A1 RPS9 DDX54 FTSJ3	1.17e-04	571	40	7	int:RPL17
Interaction	YTHDF3 interactions	LSM14A UPF1 PRRC2A EIF4A1 KIF1C	1.21e-04	246	40	5	int:YTHDF3
Interaction	DDRGK1 interactions	MRPL41 NOP9 UPF1 SNRPD1 CHTOP EIF4A2 DDX5 RPS9 DDX54 FTSJ3	1.23e-04	1249	40	10	int:DDRGK1
Interaction	PTPRB interactions	MAGI3 RGS14 FTSJ3	1.41e-04	51	40	3	int:PTPRB
Interaction	UFL1 interactions	MRPL41 LSM14A UPF1 SNRPD1 EIF4A1 DDX5 RPS9 DDX54 FTSJ3	1.51e-04	1031	40	9	int:UFL1
Interaction	HNRNPU interactions	LSM14A CHD3 UPF1 MRPL15 SNRPD1 DDX5 RPS9 DDX54 FTSJ3	1.55e-04	1035	40	9	int:HNRNPU
Interaction	ALYREF interactions	CHD3 UPF1 MRPL15 CHTOP DDX5 RPS9	1.58e-04	416	40	6	int:ALYREF
Interaction	NUP35 interactions	PRR12 KMT2C AKAP8 SNRPD1 AHDC1 DDX5	1.75e-04	424	40	6	int:NUP35
Interaction	TLX2 interactions	PRR12 KMT2C LSM14A DDX54	1.77e-04	142	40	4	int:TLX2
Cytoband	Ensembl 112 genes in cytogenetic band chr17p13	CHD3 EIF4A1 KIF1C	3.66e-03	346	41	3	chr17p13
Cytoband	Ensembl 112 genes in cytogenetic band chr19q13	PRR12 LSM14A GGN RPS9 PNMA8B	4.04e-03	1192	41	5	chr19q13
GeneFamily	DEAD-box helicases	EIF4A1 EIF4A2 DDX5 DDX54	4.95e-07	42	28	4	499
GeneFamily	Zinc fingers C2H2-type\|Lysine methyltransferases\|PR/SET domain family	KMT2C PRDM8	1.26e-03	34	28	2	487
GeneFamily	Collagens	COL4A3 COL11A2	2.30e-03	46	28	2	490
GeneFamily	Mitochondrial ribosomal proteins	MRPL41 MRPL15	6.62e-03	79	28	2	646
GeneFamily	PHD finger proteins	KMT2C CHD3	8.52e-03	90	28	2	88
Coexpression	WEST_ADRENOCORTICAL_TUMOR_DN	SREBF1 COL4A3 LSM14A CHD3 EIF4A1 CD2BP2 DDX5 RPS9 FTSJ3	1.34e-07	546	41	9	M3837
Coexpression	GSE21927_SPLEEN_VS_TUMOR_MONOCYTE_C57BL6_DN	KMT2C LSM14A AKAP8 HAGHL PPP1R15B	1.09e-05	188	41	5	M7583
ToppCell	PND14-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1-AT1_mature\|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3 TRIM3	2.33e-05	182	41	4	573771130247e869e4e58f22d4a1cb31989635cf
ToppCell	PND14-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1\|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3 TRIM3	2.33e-05	182	41	4	6cfaa2b3b3974c13b01c943f4adb70768dcc35e4
ToppCell	droplet\|World / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EIF4A1 EIF4A2 DDX5 RPS9	2.71e-05	189	41	4	6e779e4f9fed7b95c4cc975b1054331d507449b2
ToppCell	PND10-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1-AT1_mature\|PND10 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3 TRIM3	2.88e-05	192	41	4	790282d4232311df3dac4ad97c80fc53443beccc
ToppCell	PND10-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1\|PND10 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3 TRIM3	2.88e-05	192	41	4	b2d9bffccd6264b4f12d88a0780646ee0b41969f
ToppCell	Epithelial-A_(AT1)\|World / shred on cell class and cell subclass (v4)	COL4A3 SHH MAGI3 TRIM3	3.12e-05	196	41	4	484bbc6b1f58bc260964babb949d14f5df101393
ToppCell	PCW_05-06\|World / Celltypes from embryonic and fetal-stage human lung	SNRPD1 EIF4A1 TCEAL5 RPS9	3.18e-05	197	41	4	1527261e2017113d8546d382a38acbb84699d03e
ToppCell	Brain_organoid-organoid_Kanton_Nature-Organoid-4M-Neuronal-cortical_neurons_2\|Organoid-4M / Sample Type, Dataset, Time_group, and Cell type.	CACNA1E PRDM8 CHD3 TCEAL5	3.37e-05	200	41	4	0cb0755a101ec655359d051d6a8807408d727c55
ToppCell	Striatum-Neuronal-Excitatory-eN3(Slc17a7_Gad1Gad2)-Slc17a6-Excitatory_Neuron.Slc17a6.Oprk1_(Claustrum_cortex)\|Striatum / BrainAtlas - Mouse McCarroll V32	ZNF469 PRDM8 PRRT4	2.22e-04	128	41	3	7e3f5cea91af005f08d8e9340fb8630bf1c887c3
ToppCell	Striatum-Neuronal-Excitatory-eN3(Slc17a7_Gad1Gad2)-Slc17a6\|Striatum / BrainAtlas - Mouse McCarroll V32	ZNF469 PRDM8 PRRT4	2.22e-04	128	41	3	a876303c852db2af9418d1a1711d7c950805018a
ToppCell	Striatum-Neuronal-Excitatory-eN3(Slc17a7_Gad1Gad2)-Slc17a6-Excitatory_Neuron.Slc17a6.Oprk1_(Claustrum_cortex)-\|Striatum / BrainAtlas - Mouse McCarroll V32	ZNF469 PRDM8 PRRT4	2.22e-04	128	41	3	388062f840fd04cb8087f27a9a78e7a192920e3e
ToppCell	P07-Epithelial-airway_epithelial_cell-ciliated_cell_of_airway\|P07 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase	COL4A3 MAGI3 SDK1	3.74e-04	153	41	3	5501095bcf73080872ae01128f21399f9cfc5dd1
ToppCell	367C-Lymphocytic-ILC\|367C / Donor, Lineage, Cell class and subclass (all cells)	COL11A2 EIF4A2 TGFBR3L	4.26e-04	160	41	3	f70ec054b6d51c1565e4a257cbe3c9537c0eb09f
ToppCell	PND28-Mesenchymal-Mesenchymal_structural-Fibroblastic-Chondrocyte-Chondrocyte_mature\|PND28 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL11A2 SDK1 AHDC1	4.74e-04	166	41	3	37794a84601a2a949d579663d4a4bb8bc8fb5923
ToppCell	PBMC-Mild-Myeloid-cDC-cDC-cDC_11\|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	SDK1 TCEAL5 CCDC74A	4.74e-04	166	41	3	b1bebcbe17386cb102b11d551e62d46156ce0c68
ToppCell	PND28-Mesenchymal-Mesenchymal_structural-Fibroblastic-Chondrocyte\|PND28 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL11A2 SDK1 AHDC1	4.74e-04	166	41	3	81c546c6d847e49e662b81e71992ca0f7a99e890
ToppCell	droplet-Pancreas-Endocrine-18m-Epithelial-nan\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	GGN DDX5 PNMA8B	4.74e-04	166	41	3	66026988509e39e41274fa0de738383219e8ff30
ToppCell	PBMC-Mild-Myeloid-cDC-cDC-cDC_11\|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	SDK1 TCEAL5 CCDC74A	4.83e-04	167	41	3	e44743b20a7435c579d8e999ddc4ca119d6753f2
ToppCell	PND10-Mesenchymal-Mesenchymal_structural-Fibroblastic-AF2-AF2_mature\|PND10 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	ZNF469 TCEAL5 PNMA8B	5.00e-04	169	41	3	031465190cd3623a25ef2b868daab8d932c8ff08
ToppCell	PND07-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1/AT2\|PND07 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3	5.35e-04	173	41	3	45808cf69122c16b9d2b5ffa06d15392c55954b7
ToppCell	PND07-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1/AT2-AT1/AT2_mature\|PND07 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3	5.35e-04	173	41	3	7fa9dbcb258c3ab974490063951620e2def03db1
ToppCell	Severe-B_naive-8\|Severe / disease group and sub_cluster of B and Plasma cells(res = 0.5)	CHD3 GRID2IP DDX5	5.44e-04	174	41	3	f3f8c924420f46321bd47e2b97f18c7241541599
ToppCell	P03-Epithelial-airway_epithelial_cell-ciliated_cell_of_airway\|P03 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase	COL4A3 SHH TRIM3	5.62e-04	176	41	3	f3a54038cde58326f1caed96ecca33c141bcc8b3
ToppCell	Control-Epithelial_alveolar-AT_1-Differentiating_AT1\|Control / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	COL4A3 SHH MAGI3	5.72e-04	177	41	3	9af14a056eb6d88c6f11b09f6d4c0d3448d647d5
ToppCell	facs-Brain_Non-Myeloid-Cerebellum_-18m-Neuronal-Granular_Neuron_CB_Gabra6\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRDM8 TCEAL5 PNMA8B	6.00e-04	180	41	3	d76349ecef7c5878bf215e946f032264161eb61b
ToppCell	droplet-Spleen-nan\|Spleen / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EIF4A2 DDX5 RPS9	6.10e-04	181	41	3	14a04d8d69d3054b6ed3370d361dec5303ca4831
ToppCell	LPS-antiTNF-Epithelial_alveolar-AT_1-Differentiating_AT1\|LPS-antiTNF / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	COL4A3 SHH MAGI3	6.10e-04	181	41	3	b45b11428d13950369347e051d4d517efb2bd4fd
ToppCell	AT1-AT2_cells-Donor_02\|World / lung cells shred on cell class, cell subclass, sample id	COL4A3 SHH MAGI3	6.30e-04	183	41	3	6821dca076318115d360ff426eb1218cfe104063
ToppCell	LPS_only-Epithelial_alveolar-AT_1-Differentiating_AT1\|LPS_only / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	COL4A3 SHH MAGI3	6.40e-04	184	41	3	42ce855b4f8475a8298192feec785bdc69bc5bb0
ToppCell	droplet\|World / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EIF4A2 DDX5 RPS9	6.50e-04	185	41	3	4c8a25f36cbf43fc78d38dfeb3f1cab160bb029d
ToppCell	LPS-IL1RA+antiTNF-Epithelial_alveolar-AT_1\|LPS-IL1RA+antiTNF / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	COL4A3 SHH MAGI3	6.50e-04	185	41	3	c82eab551f65ecebe6db908eda9f9eb3414693c7
ToppCell	droplet-Spleen-nan-3m\|Spleen / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CHD3 EIF4A2 RPS9	6.60e-04	186	41	3	26f1e9930adf2fe4af0819e56f69915bd8330e4a
ToppCell	droplet\|World / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EIF4A2 DDX5 RPS9	6.60e-04	186	41	3	fd69a94144710d63fe047cdc50813f42ac7ab68d
ToppCell	saliva-Severe-critical_progression_d28-40\|saliva / Compartment, severity and other cell annotations on 10x 3' data (130k)	PPP1R15B DDX5 RPS9	6.60e-04	186	41	3	0095560ca776b01aa473ad4d6015ed78fc93ff51
ToppCell	390C-Lymphocytic-CD4_T-cell-Treg_cell_3\|Lymphocytic / Donor, Lineage, Cell class and subclass (all cells)	PRDM8 NOP9 KIF1C	6.60e-04	186	41	3	74eb69a52090f9e2426a47e03a1c478ee0cfec18
ToppCell	LPS-IL1RA+antiTNF-Epithelial_alveolar-AT_1-Differentiating_AT1\|LPS-IL1RA+antiTNF / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	COL4A3 SHH MAGI3	6.60e-04	186	41	3	3aebe163799109ffc67e4e10ee47c2dd0886a92c
ToppCell	droplet-Bladder-nan\|Bladder / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	SHH CHD3 DDX5	6.71e-04	187	41	3	663991a8afe652e92363b64bcbd68c14d0307f0e
ToppCell	droplet-Spleen-nan-3m-Lymphocytic\|Spleen / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CHD3 EIF4A2 RPS9	6.71e-04	187	41	3	91c8e93bde0d1d1a4e324b0acf2afda00f4fb3bf
ToppCell	LPS_only-Epithelial_alveolar-AT_1\|LPS_only / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	COL4A3 SHH MAGI3	6.71e-04	187	41	3	ff26a533d310126521efe1d05cf8b9d32e524550
ToppCell	droplet-Spleen-nan-3m-Lymphocytic-nan\|Spleen / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CHD3 EIF4A2 RPS9	6.71e-04	187	41	3	382db691eb0b3e089e816bed3d6699cc2d4e1bda
ToppCell	390C-Lymphocytic-CD4_T-cell-Treg_cell_3\|CD4_T-cell / Donor, Lineage, Cell class and subclass (all cells)	PRDM8 NOP9 KIF1C	6.71e-04	187	41	3	1eed2c1a05e80a7c8f639437c117afe0c18dfb0c
ToppCell	renal_medulla_nuclei-Adult_normal_reference-Epithelial-Intermediate_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 SHH SDK1	6.92e-04	189	41	3	aadb7a2de4cbe7f0958651f2739bba430b93f5c1
ToppCell	droplet-Lung-LUNG-1m-Mesenchymal-bronchial_smooth_muscle_cell\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	COL4A3 TCEAL5 CCDC74A	6.92e-04	189	41	3	4dc32b463546bbe7250dddd281b92ad17ec22da1
ToppCell	droplet-Lung-LUNG-1m-Mesenchymal-Airway_Smooth_Muscle\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	COL4A3 TCEAL5 CCDC74A	6.92e-04	189	41	3	0d06bf0d7191d13a1c4f30a7881e7ea1093bfd6f
ToppCell	renal_medulla_nuclei-Adult_normal_reference-Epithelial-Intermediate_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell-Adaptive_/_Maladaptive_/_Repairing_Thick_Ascending_Limb_Cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 SHH SDK1	6.92e-04	189	41	3	8977f3295b7df7c7474b3f371de90a82ae4bb50c
ToppCell	facs-GAT-Fat-3m\|GAT / Fat_BAT_GAT_MAT_SCAT - method, tissue, subtissue, age, lineage, cell ontology and free annotation	COL4A3 EIF4A2 DDX5	7.02e-04	190	41	3	1d92be1b41cff59e834a9d28868f554bd1f3e471
ToppCell	PND07-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1\|PND07 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3	7.13e-04	191	41	3	ce76b156b153a2c7c9f2fb8e563b69c81073fbe5
ToppCell	PND07-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1-AT1_mature\|PND07 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3	7.13e-04	191	41	3	c006f5a6e3a32b79ac99a78304bdd5116fc0d5e0
ToppCell	P07-Epithelial-alveolar_epithelial_cell-type_I_pneumocyte\|P07 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase	COL4A3 SHH TRIM3	7.13e-04	191	41	3	0f360766490bef3495c42f6421b22a988cfc68fb
ToppCell	P03-Epithelial-alveolar_epithelial_cell-type_I_pneumocyte\|P03 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase	COL4A3 SHH TRIM3	7.24e-04	192	41	3	be5e246b2350398b985767b2fbede17a8dd8cc44
ToppCell	10x3'2.3-week_17-19-Hematopoietic-HSC/MPP_and_pro-ELP\|week_17-19 / cell types per 3 fetal stages;per 3',per 5'	MRPL15 SNRPD1 RPS9	7.24e-04	192	41	3	3107ac48e1d9faaea96f07332ffe611e4ebef1a7
ToppCell	droplet-Pancreas-Endocrine-18m\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EIF4A2 DDX5 PNMA8B	7.24e-04	192	41	3	4510aa262da8dcf7c944b3907a51aba5a9397a4e
ToppCell	Epithelial\|World / shred on cell class and cell subclass (v4)	COL4A3 SHH MAGI3	7.24e-04	192	41	3	13a3553d9a7c78535679d23d454c63fd08f7d218
ToppCell	droplet-Pancreas-Endocrine\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EIF4A2 DDX5 PNMA8B	7.24e-04	192	41	3	0dfd1e9896c34aee0f842f8de5d0e3af62a15f68
ToppCell	PND03-Epithelial-Epithelial_Alveolar\|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3	7.35e-04	193	41	3	5dfa69a680a0859900141c40a446d217aaa747d3
ToppCell	PND03-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar\|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3	7.35e-04	193	41	3	ebea35704ac5d21e947ae094313cf2a5205e7014
ToppCell	368C-Myeloid-Monocyte\|Myeloid / Donor, Lineage, Cell class and subclass (all cells)	PRDM8 PPP1R15B RPS9	7.46e-04	194	41	3	f9b9cbd1a418a7cbd151c2425fda6b864db9aa82
ToppCell	(10)_Ciliated-(0)_Reference\|(10)_Ciliated / shred by cell type by condition	MRPL41 HAGHL RPS9	7.46e-04	194	41	3	f9d5bf6baddbd88947e6a740805962109649ed3b
ToppCell	Mild/Remission-B_memory-0\|Mild/Remission / disease group and sub_cluster of B and Plasma cells(res = 0.5)	COL4A3 HAGHL EIF4A1	7.46e-04	194	41	3	4866093b50cdf895f06b60684cc3aaa9769aa4dc
ToppCell	ASK428\|World / Donor, Lineage and Cell class of Lung cells from Dropseq	COL4A3 MAGI3 RPS9	7.57e-04	195	41	3	41cbd7ea0bfab2db338b4ba0fc67cb3ae0d63d6d
ToppCell	368C-Myeloid-Monocyte-CD14+_Monocyte\|Myeloid / Donor, Lineage, Cell class and subclass (all cells)	PRDM8 PPP1R15B RPS9	7.57e-04	195	41	3	8da933942e9033e18e25ab47831c269747b1c0b2
ToppCell	CV-Severe-2\|CV / Virus stimulation, Condition and Cluster	MRPL15 SNRPD1 EIF4A1	7.57e-04	195	41	3	1cde7f6e6c9c610bacc79014519447112c27dd9d
ToppCell	PND03-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1-AT1_mature\|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3	7.68e-04	196	41	3	9790340c25f446ec655f5a0b64ec3bb44ed2e1bd
ToppCell	PND03-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1\|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL4A3 SHH MAGI3	7.68e-04	196	41	3	b9ceceeacbcf81976ce92adf044f0d0aa132632b
ToppCell	renal_papilla_nuclei-Adult_normal_reference-Epithelial\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	COL4A3 MAGI3 SDK1	7.68e-04	196	41	3	c7136b1c83bcf907eec3b02b151fa061298b6672
ToppCell	Epithelial-Epithelial-A_(AT1)\|Epithelial / shred on cell class and cell subclass (v4)	COL4A3 SHH TRIM3	7.68e-04	196	41	3	41b21a18125cc95bc8adde3369e4abd029cf137d
ToppCell	Basal-basal-9\|World / Class top	EIF4A1 DDX5 RPS9	7.80e-04	197	41	3	66db9eeb66b378471e4bccc2e6de51053d7cfa5c
ToppCell	severe-low-quality_cells\|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class	KMT2C CHD3 DDX5	7.80e-04	197	41	3	57ebd552f10d6278623b52a3d484d4b91ae1d028
ToppCell	Basal-basal-5\|World / Class top	EIF4A1 DDX5 RPS9	7.80e-04	197	41	3	267db5fc5d59eeadbc7746af08ed6e3cb3da8f3a
ToppCell	(08)_Brush+PNEC-(0)_Reference\|(08)_Brush+PNEC / shred by cell type by condition	MRPL41 PRRC2A RPS9	7.80e-04	197	41	3	d500bfed2a76f7300f2f17b60962c18a40efd084
ToppCell	COVID_vent-Lymphocytic-T_cell\|COVID_vent / Disease condition, Lineage, Cell class and subclass	CHD3 EIF4A2 DDX5	7.80e-04	197	41	3	ad702e440a74d54cfdcb8bb1c66bd8e0e71ab04e
ToppCell	Biopsy_IPF-Epithelial-AT1\|Biopsy_IPF / Sample group, Lineage and Cell type	COL4A3 SHH MAGI3	7.91e-04	198	41	3	75bdecbe111fededf6082b11de18b84ca308ef6d
ToppCell	Brain_organoid-organoid_Paulsen_bioRxiv-1_mon-IPC_like-IPCs\|1_mon / Sample Type, Dataset, Time_group, and Cell type.	EIF4A1 DDX5 RPS9	7.91e-04	198	41	3	b3488e916fff9a4ff62eb897d3783c93296dbd65
ToppCell	356C-Lymphocytic-CD4_T-cell-CD4+_Naive_T_cell_/_CD4+_Trm_cell\|CD4_T-cell / Donor, Lineage, Cell class and subclass (all cells)	EIF4A2 DDX5 RPS9	7.91e-04	198	41	3	0f25a3bf2af543267b43e56064ad06dfc18c7bd7
ToppCell	Multiple_Sclerosis\|World / Disease, Lineage and Cell Type	EIF4A2 DDX5 RPS9	7.91e-04	198	41	3	46728bb03f4b0d30ae9b62d984a6c2d00cfd370a
ToppCell	Basal-basal-7\|World / Class top	EIF4A1 DDX5 RPS9	7.91e-04	198	41	3	240fe56b41b9435e62c66ac7161ef51f89e73e44
ToppCell	wk_15-18-Epithelial-Airway_epithelial_progenitor\|wk_15-18 / Celltypes from embryonic and fetal-stage human lung	COL4A3 SHH MAGI3	7.91e-04	198	41	3	c477405b093f4e5374e57bcacf1fb204a0f7eb3b
ToppCell	COVID-19-Heart-Mito_EC\|Heart / Disease (COVID-19 only), tissue and cell type	MRPL41 RPS9 KIF1C	7.91e-04	198	41	3	3cc34b5d333abba11ab846c26fb4477051958465
ToppCell	wk_15-18-Epithelial-Airway_epithelial_progenitor-epi-stalk_late\|wk_15-18 / Celltypes from embryonic and fetal-stage human lung	COL4A3 SHH MAGI3	7.91e-04	198	41	3	1851b7f4198b42c21c934e2fbda39dbd65e2625c
ToppCell	Brain_organoid-organoid_Kanton_Nature-Organoid-2M-Neuronal-cortical_neurons_1\|Organoid-2M / Sample Type, Dataset, Time_group, and Cell type.	CACNA1E PRDM8 CHD3	7.91e-04	198	41	3	d81f35c0066558ff96dd06f58fca72cd82e681e8
ToppCell	CV-Severe-2\|Severe / Virus stimulation, Condition and Cluster	MRPL15 SNRPD1 EIF4A1	7.91e-04	198	41	3	254659bb53dc2511c714295c2df1ab1fddb2f867
ToppCell	COVID_vent-Lymphocytic-T_cell-CD4+_Memory_T_cell\|COVID_vent / Disease condition, Lineage, Cell class and subclass	CHD3 EIF4A2 DDX5	7.91e-04	198	41	3	58f208b76cb0adcecdf632d92f92833a06f9bf71
ToppCell	Brain_organoid-organoid_Paulsen_bioRxiv-1_mon-IPC_like\|1_mon / Sample Type, Dataset, Time_group, and Cell type.	EIF4A1 DDX5 RPS9	7.91e-04	198	41	3	6d99901d4df24eb3c5cca80afd9a81eb7ee8fcf1
ToppCell	CD8+_Memory_T_cell-FLU-2\|CD8+_Memory_T_cell / cell class, Virus stimulation and cluster	SNRPD1 HAGHL TGFBR3L	7.91e-04	198	41	3	9813578a58cdedf68b57a0a5e3cf190c9c25a4cd
ToppCell	Neuron-Postmitotic-Excitatory_Neuron_-Parietal_and_Temporal-6\|World / Primary Cells by Cluster	PRDM8 CHD3 EIF4A2	8.03e-04	199	41	3	1b1bccf4293f11048709d15a3c892c0edf3da3d2
ToppCell	Enterocyte_Progenitors\|World / shred on cell type and cluster	SNRPD1 EIF4A1 RPS9	8.03e-04	199	41	3	776bcc887927dea9ebd76ec4338ce2225c319c2c
ToppCell	(2)_B_cell-(22)_B_cell_memory\|(2)_B_cell / shred on Cell_type and subtype	HAGHL DDX5 RPS9	8.03e-04	199	41	3	c4c8faa458c1a49487e13667e68bfb1b4b7759b5
ToppCell	CD8+_Memory_T_cell-CV-2\|CD8+_Memory_T_cell / cell class, Virus stimulation and cluster	MRPL15 SNRPD1 EIF4A1	8.03e-04	199	41	3	1e33d8e2e0d6a54ef6e2e13f986e19fd209275a8
ToppCell	367C-Endothelial_cells-Endothelial-A_(Artery)-\|Endothelial_cells / Donor, Lineage, Cell class and subclass (all cells)	SNRPD1 EIF4A1 EIF4A2	8.03e-04	199	41	3	62936fb64b33f7ad671f9c610bed665f17d3145e
ToppCell	Transverse-T_cell-Th1\|T_cell / Region, Cell class and subclass	PPP1R15B EIF4A2 DDX5	8.03e-04	199	41	3	9271d9d36ffe1c169049d4340258f366916adfaf
ToppCell	10x3'2.3-week_17-19-Hematopoietic-HSC/MPP_and_pro\|week_17-19 / cell types per 3 fetal stages;per 3',per 5'	MRPL15 SNRPD1 RPS9	8.03e-04	199	41	3	0dbeefd99cd1a4d86ee698efbbd75f24dc74fb8c
ToppCell	CV-Moderate-2\|CV / Virus stimulation, Condition and Cluster	MRPL15 SNRPD1 EIF4A1	8.03e-04	199	41	3	2d98424a5247e87f98095c11fb945289092a9d75
ToppCell	metastatic_Lymph_Node-B_lymphocytes-Follicular_B_cells\|B_lymphocytes / Location, Cell class and cell subclass	EIF4A2 DDX5 RPS9	8.03e-04	199	41	3	86e9582126ab6e219015a685c42f946ee163db15
ToppCell	Basal-basal-10\|World / Class top	EIF4A1 DDX5 RPS9	8.03e-04	199	41	3	4fadfc58102b21bf9db9d0092f3437aa78fddd99
ToppCell	CV-Moderate-2\|Moderate / Virus stimulation, Condition and Cluster	MRPL15 SNRPD1 EIF4A1	8.03e-04	199	41	3	70d6f2a328eec4cb2cecb7cd85859fba9e15c9c8
ToppCell	VE-CD8-CD8_2\|VE / Condition, Cell_class and T cell subcluster	HAGHL EIF4A2 RPS9	8.03e-04	199	41	3	014fff8a0ebfda094a6ad76ddc0131e12a313394
ToppCell	Neuron-Postmitotic-Excitatory_Neuron_-Parietal_and_Temporal\|World / Primary Cells by Cluster	PRDM8 CHD3 EIF4A2	8.03e-04	199	41	3	4bee94c116c0da5eba951cb4cea7cc9dcdd6e30f
ToppCell	367C-Endothelial_cells-Endothelial-A_(Artery)\|Endothelial_cells / Donor, Lineage, Cell class and subclass (all cells)	SNRPD1 EIF4A1 EIF4A2	8.03e-04	199	41	3	f53e0e4c34e6aec81ab07593aa11e045ba04df06
ToppCell	18\|World / Age, Tissue, Lineage and Cell class	COL11A2 EIF4A2 DDX5	8.03e-04	199	41	3	ef043232ee028778b8ddb92aeed7584e2bf586d5
ToppCell	Fetal_brain-fetalBrain_Zhong_nature-GW09-Neuronal\|GW09 / Sample Type, Dataset, Time_group, and Cell type.	CACNA1E PRDM8 TCEAL5	8.14e-04	200	41	3	e9eb348a66011d8aace4331f84690ae27cb0d061
Computational	Neighborhood of JUND	LSM14A EIF4A2 DDX5	2.86e-04	64	22	3	MORF_JUND
Computational	Neighborhood of CCNI	LSM14A EIF4A1 EIF4A2	7.30e-04	88	22	3	MORF_CCNI
Computational	Genes in the cancer module 81.	EIF4A1 EIF4A2	7.43e-04	20	22	2	MODULE_81
Computational	Genes in the cancer module 115.	EIF4A1 EIF4A2	1.36e-03	27	22	2	MODULE_115
Computational	Genes in the cancer module 318.	CHD3 DDX5	1.46e-03	28	22	2	MODULE_318
Computational	Genes in the cancer module 229.	EIF4A2 DDX5	1.79e-03	31	22	2	MODULE_229
Computational	Neighborhood of CSNK1A1	CHTOP PPP1R15B	2.42e-03	36	22	2	GCM_CSNK1A1
Computational	Translation factors.	EIF4A1 EIF4A2	2.55e-03	37	22	2	MODULE_149
Computational	Neighborhood of EIF4A2	LSM14A EIF4A2 DDX5	2.67e-03	138	22	3	MORF_EIF4A2
Computational	Neighborhood of ACTG1	EIF4A1 EIF4A2 RPS9	2.67e-03	138	22	3	MORF_ACTG1
Disease	Macrocephaly	CACNA1E CHD3	8.35e-05	11	37	2	C0221355
Disease	Connective Tissue Diseases	ZNF469 COL11A2	1.18e-04	13	37	2	C0009782
Disease	Sezary Syndrome	KMT2C CHD3	5.26e-04	27	37	2	C0036920
Disease	Global developmental delay	PRR12 CACNA1E CHD3	6.22e-04	133	37	3	C0557874
Disease	Takayasu arteritis	PRRC2A PRRT4 RPS9	8.48e-04	148	37	3	EFO_1001857
Disease	nasopharynx carcinoma (is_marker_for)	KMT2C SNRPD1	1.34e-03	43	37	2	DOID:9261 (is_marker_for)
Disease	hematocrit	SREBF1 COL4A3 PRR12 RGS14 PRDM8 CHD3	1.49e-03	1011	37	6	EFO_0004348
Disease	macula measurement	COL4A3 SHH CHD3	1.71e-03	189	37	3	EFO_0008375
Disease	Intellectual Disability	PRR12 CACNA1E KMT2C CHD3	2.31e-03	447	37	4	C3714756

Protein segments in the cluster

Peptide	Gene	Start	Entry
GHYRRRRRGGPGPGM	CACNA1E	2281	Q15878
KGKRGTLGFPGRAGR	COL4A3	1026	Q01955
RGFDRFGPDGTGRKR	AKAP8	291	O43823
RVQGFRRRGGKAGGF	AHDC1	661	Q5TGY3
RTHRPGGKRGRLAGG	CCDC74A	141	Q96AQ1
RRGKRVGGEGTGFGV	HAGHL	206	Q6PII5
VGRRFPAGGKRGRGA	NOP9	11	Q86U38
RGSGFPGKRRPRGAG	KMT2C	886	Q8NEZ4
RGPRGFGFSLRGGKE	MAGI3	1026	Q5TCQ9
RGPERRGGKRDRGQG	DDX54	791	Q8TDD1
GRDRGFGAPRFGGSR	DDX5	11	P17844
YIHRIGRGGRFGRKG	EIF4A1	356	P60842
RRGRAGADGARGMPG	COL11A2	536	P13942
GGRGGGLRRPPARFV	KIF1C	956	O43896
RGGRGRFGIRRDGPM	LSM14A	276	Q8ND56
FTAPRGFRGGFRGGR	LSM14A	431	Q8ND56
FNGAGGGIGAPRRRA	GGN	366	Q86UU5
TGRGGRQKNRFGLPG	UPF1	1026	Q92900
RRLGARGGGKGRKGP	CD2BP2	176	O95400
AGPGGARRTVRVYKG	GRID2IP	271	A4D2P6
GGSEYGTGPGRKRRR	CHD3	91	Q12873
IGRGGRFGRKGVAIN	EIF4A2	361	Q14240
GRCGGRRAAKLGPGR	SDK1	66	Q7Z5N4
LRSPYGGGRPGRVKR	RPS9	161	P46781
GPRSFRGRKGRGAKG	MRPL41	26	Q8IXM3
RGRKGRGAKGIGFLT	MRPL41	31	Q8IXM3
GRKCGRGHKGERQRG	MRPL15	46	Q9P015
GLACGPGRGFGKRRH	SHH	21	Q15465
RRGRGGRVTFPGGLK	TGFBR3L	16	H3BV60
GARKTRAGGRGRGRG	PNMA8B	556	Q9ULN7
RAGGRGRGRGVTPEK	PNMA8B	561	Q9ULN7
GAGLVGGRGRFVERP	PRDM8	326	Q9NQV8
RGFRGTYGGRGRGAR	PRRC2A	1036	P48634
GVGRKVRRPAGVRGH	FTSJ3	806	Q8IY81
RGRGRGRGRKAEEAG	PRR12	1201	Q9ULL5
GGSRKRLGPRAGFRF	PPP1R15B	6	Q5SWA1
LRRRAGPGGKGGAVA	SREBF1	1061	P36956
GGRAVAPRMGLRRGG	CHTOP	141	Q9Y3Y2
APRMGLRRGGVRGRG	CHTOP	146	Q9Y3Y2
GVRGVRGGGRGQKDL	TCEAL5	186	Q5H9L2
GRRRRAGAPLGGSGF	PRRT4	521	C9JH25
KREAVAGRGRGRGRG	SNRPD1	91	P62314
GGRPLRKSFRRELGG	RGS14	236	O43566
LGARGFPGGRRSGRD	nan	156	Q8N1X5
PGFRGRRGRGEKRKE	ZNF469	1081	Q96JG9
GKLVGRFGGRGATDR	TRIM3	606	O75382