Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyMolecularFunction	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IRX5 CEBPA INSM1 CC2D1A MEIS3 ZSCAN25 KDM6B ZNF865 RXRB MYEF2 IKZF4 TLX2 IRF9 SALL2 FUBP1 SKOR1 SMARCA4 SIX2	2.10e-04	1244	113	18	GO:0000978
GeneOntologyMolecularFunction	cis-regulatory region sequence-specific DNA binding	IRX5 CEBPA INSM1 CC2D1A MEIS3 ZSCAN25 KDM6B ZNF865 RXRB MYEF2 IKZF4 TLX2 IRF9 SALL2 FUBP1 SKOR1 SMARCA4 SIX2	2.74e-04	1271	113	18	GO:0000987
GeneOntologyMolecularFunction	chromatin DNA binding	CEBPA INSM1 KDM6B REPIN1 RXRB SMARCA4	3.78e-04	167	113	6	GO:0031490
GeneOntologyMolecularFunction	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IRX5 CEBPA INSM1 CC2D1A MEIS3 ZSCAN25 KDM6B ZNF865 RXRB MYEF2 IKZF4 TLX2 IRF9 SALL2 BARHL1 FUBP1 SKOR1 SMARCA4 SIX2	5.20e-04	1459	113	19	GO:0000977
MousePheno	open neural tube	KMT2B ERF TSC1 MBD6 SALL2 ZC3H4 PPP1R35 RERE SCRIB	1.11e-05	226	87	9	MP:0000929
Domain	LRRC37AB_C	LRRC37A3 LRRC37A2 LRRC37A	8.36e-07	4	112	3	IPR029423
Domain	LRRC37AB_C	LRRC37A3 LRRC37A2 LRRC37A	8.36e-07	4	112	3	PF14914
Domain	LRRC37_N	LRRC37A3 LRRC37A2 LRRC37A	8.36e-07	4	112	3	IPR032754
Domain	LRRC37	LRRC37A3 LRRC37A2 LRRC37A	8.36e-07	4	112	3	PF15779
Domain	LRRC37A/B-like	LRRC37A3 LRRC37A2 LRRC37A	8.36e-07	4	112	3	IPR015753
Pubmed	Large-scale characterization of HeLa cell nuclear phosphoproteins.	GBF1 KMT2B OTUD5 SCAF8 SAMD4B BAG3 HNRNPUL1 AKAP8L SCAF1 PAXBP1 GSE1 ZC3H4 FUBP1 TLE3 SMARCA4 RERE SCRIB SF3B2	1.45e-10	774	118	18	15302935
Pubmed	A dual-activity topoisomerase complex regulates mRNA translation and turnover.	COL4A5 CRYBG2 GBF1 KMT2B SZT2 INPPL1 EMID1 LAMA5 CC2D1A KDM6B MBD6 POM121C ZNF865 REPIN1 FBXO46 RNF43 C8orf58 SCAF1 STRN4 ANKRD34A CENPV	1.48e-10	1105	118	21	35748872
Pubmed	Interaction network of human early embryonic transcription factors.	BCL9L KMT2B ERF MBD6 POM121C AKAP8L PBRM1 GSE1 TLE3 SMARCA4 RERE	3.46e-08	351	118	11	38297188
Pubmed	Human transcription factor protein interaction networks.	BCL9L KMT2B ERF SCAF8 CC2D1A HNRNPUL1 MBD6 POM121C AKAP8L TLX2 IRF9 PBRM1 SALL2 GSE1 FUBP1 TLE3 PIP4P1 SMARCA4 CSTF2 RERE	7.23e-08	1429	118	20	35140242
Pubmed	Primate segmental duplication creates novel promoters for the LRRC37 gene family within the 17q21.31 inversion polymorphism region.	LRRC37A3 LRRC37A2 LRRC37A	1.52e-07	4	118	3	22419166
Pubmed	Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.	ERF SH3BP2 POM121C REPIN1 RNF43 AKAP8L MYEF2 SCAF1 PBRM1 SALL2 RASAL3 GSE1 ZC3H4 SMARCA4 RERE SCRIB KIF18B	2.38e-07	1116	118	17	31753913
Pubmed	Proximity-dependent Mapping of the Androgen Receptor Identifies Kruppel-like Factor 4 as a Functional Partner.	BCL9L CHERP PBRM1 PAXBP1 GSE1 ZC3H4 TLE3 SMARCA4 RERE	3.60e-07	268	118	9	33640491
Pubmed	SMYD3 Impedes Small Cell Lung Cancer Sensitivity to Alkylation Damage through RNF113A Methylation-Phosphorylation Cross-talk.	CHERP ERF BAG3 HNRNPUL1 POM121C REPIN1 AKAP8L MYEF2 ASAP1 GSE1 ZC3H4 RERE SF3B2	3.80e-07	655	118	13	35819319
Pubmed	Characterizing WW domain interactions of tumor suppressor WWOX reveals its association with multiprotein networks.	WASL SCAF8 INPPL1 HNRNPUL1 SMARCA4 CSTF2 DIAPH3 SF3B2	9.09e-07	220	118	8	24550385
Pubmed	A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract.	CEBPA ERF ID3 TACC2 MEIS3 RNF43 RXRB IKZF4 PBRM1 SALL2 BARHL1 SMARCA4 SIX2	9.21e-07	709	118	13	22988430
Pubmed	Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders.	VGF NEDD4L NUMBL DGKZ TSC1 HCN2 MYEF2 PBRM1 FAM171A2 ZC3H4 STRN4 SMARCA4 SCRIB FRMPD3 WASF1	9.85e-07	963	118	15	28671696
Pubmed	A probability-based approach for high-throughput protein phosphorylation analysis and site localization.	ERF SAMD4B BAG3 CC2D1A TACC2 PBRM1 ZC3H4 FUBP1 TLE3 FAM83G SCRIB	1.24e-06	503	118	11	16964243
Pubmed	A census of human transcription factors: function, expression and evolution.	FOXN1 IRX5 ERF INSM1 ID3 MEIS3 RXRB TLX2 IRF9 SALL2 BARHL1 SKOR1 RERE SIX2	2.62e-06	908	118	14	19274049
Pubmed	Multiple tumor suppressors regulate a HIF-dependent negative feedback loop via ISGF3 in human clear cell renal cancer.	IRF9 PBRM1 SMARCA4	3.15e-06	9	118	3	30355451
Pubmed	N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective.	CHERP NUMBL BAG3 PTPN23 CC2D1A TSC1 TACC2 HNRNPUL1 POM121C GSE1 ZC3H4 SMARCA4 SCRIB SF3B2	3.62e-06	934	118	14	33916271
Pubmed	MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons.	CHERP NEDD4L NUMBL RBM42 ZSCAN25 HNRNPUL1 ZC3H6 AKAP8L MYEF2 PAXBP1 ZC3H4 SMARCA4 CSTF2 SF3B2 PLXNB1	4.09e-06	1082	118	15	38697112
Pubmed	Evolutionary dynamism of the primate LRRC37 gene family.	LRRC37A3 LRRC37A2 LRRC37A	4.49e-06	10	118	3	23064749
Pubmed	Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes.	FOXN1 GBF1 ID3 RXRB MYEF2 IRF9 SALL2 GSE1 TLE3 SMARCA4 SCRIB WASF1 SF3B2	7.27e-06	857	118	13	25609649
Pubmed	A central chaperone-like role for 14-3-3 proteins in human cells.	GBF1 NEDD4L NUMBL INPPL1 SAMD4B BAG3 CC2D1A HNRNPUL1 MAST4 FAM171A2 FAM83G SCRIB WNK4	7.63e-06	861	118	13	36931259
Pubmed	H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.	CEBPA CHERP KMT2B ERF RBM42 HNRNPUL1 POM121C SCAF1 PBRM1 PAXBP1 SMARCA4 CSTF2 CENPV KIF18B SF3B2 SIX2	8.08e-06	1294	118	16	30804502
Pubmed	Interplay of BAF and MLL4 promotes cell type-specific enhancer activation.	CEBPA PBRM1 SMARCA4	8.19e-06	12	118	3	33712604
Pubmed	Spatiotemporal-resolved protein networks profiling with photoactivation dependent proximity labeling.	CHERP BAG3 ZC3H4 FUBP1 TLE3 STRN4 CSTF2 SCRIB SF3B2	9.36e-06	399	118	9	35987950
Pubmed	TRIM33 drives prostate tumor growth by stabilizing androgen receptor from Skp2-mediated degradation.	HNRNPUL1 MYEF2 PBRM1 GSE1 FUBP1 RERE SF3B2	1.07e-05	220	118	7	35785414
Pubmed	Loss of histone demethylase KDM6B enhances aggressiveness of pancreatic cancer through downregulation of C/EBPα.	CEBPA KDM6B	1.14e-05	2	118	2	24947179
Pubmed	Brg-1 targeting of novel miR550a-5p/RNF43/Wnt signaling axis regulates colorectal cancer metastasis.	RNF43 SMARCA4	1.14e-05	2	118	2	25961913
Pubmed	Insulation of the ubiquitous Rxrb promoter from the cartilage-specific adjacent gene, Col11a2.	COL11A2 RXRB	1.14e-05	2	118	2	18682388
Pubmed	Differential expression of an acidic domain in the amino-terminal propeptide of mouse pro-alpha 2(XI) collagen by complex alternative splicing.	COL11A2 RXRB	1.14e-05	2	118	2	7836472
Pubmed	Separable cis-regulatory elements that contribute to tissue- and site-specific alpha 2(XI) collagen gene expression in the embryonic mouse cartilage.	COL11A2 RXRB	1.14e-05	2	118	2	8830784
Pubmed	The mouse col11a2 gene. Some transcripts from the adjacent rxr-beta gene extend into the col11a2 gene.	COL11A2 RXRB	1.14e-05	2	118	2	8981332
Pubmed	Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1-CoREST interactome during embryonic stem cell differentiation.	KMT2B BAG3 RBBP8NL AKAP8L SALL2 GSE1 TLE3 RERE DIAPH3	1.35e-05	418	118	9	34709266
Pubmed	The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6→ Tbr2→ Tbr1.	KMT2B INSM1 KDM6B MBD6 PBRM1 SMARCA4	1.67e-05	157	118	6	30186101
Pubmed	Interactome analyses revealed that the U1 snRNP machinery overlaps extensively with the RNAP II machinery and contains multiple ALS/SMA-causative proteins.	CHERP HNRNPUL1 AKAP8L PBRM1 PAXBP1 SMARCA4 SF3B2	2.09e-05	244	118	7	29884807
Pubmed	SETD1A Methyltransferase Is Physically and Functionally Linked to the DNA Damage Repair Protein RAD18.	KMT2B RBM42 HNRNPUL1 SCAF1 PAXBP1 ZC3H4 SMARCA4	2.50e-05	251	118	7	31076518
Pubmed	Human Antiviral Protein IFIX Suppresses Viral Gene Expression during Herpes Simplex Virus 1 (HSV-1) Infection and Is Counteracted by Virus-induced Proteasomal Degradation.	CHERP LAMA5 MYEF2 SCAF1 SMARCA4 CENPV SF3B2	2.50e-05	251	118	7	28077445
Pubmed	Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus.	IRX5 ERF MEIS3 RXRB IKZF4 BARHL1 SIX2	3.37e-05	263	118	7	20932939
Pubmed	A reverse signaling pathway downstream of Sema4A controls cell migration via Scrib.	SCRIB PLXNB1	3.42e-05	3	118	2	28007914
Pubmed	N-WASP involvement in dorsal ruffle formation in mouse embryonic fibroblasts.	WASL WASF1	3.42e-05	3	118	2	17182853
Pubmed	Hypergrowth mTORC1 signals translationally activate the ARF tumor suppressor checkpoint.	FOXN1 TSC1	3.42e-05	3	118	2	22064482
Pubmed	Physical mapping of the Ring1, Ring2, Ke6, Ke4, Rxrb, Col11a2, and RT1.Hb genes in the rat major histocompatibility complex.	COL11A2 RXRB	3.42e-05	3	118	2	8662089
Pubmed	SMARCA4 deficient tumours are vulnerable to KDM6A/UTX and KDM6B/JMJD3 blockade.	KDM6B SMARCA4	3.42e-05	3	118	2	34262032
Pubmed	Selectivity of chromatin-remodelling cofactors for ligand-activated transcription.	PBRM1 SMARCA4	3.42e-05	3	118	2	11780067
Pubmed	MicroRNA-939 restricts Hepatitis B virus by targeting Jmjd3-mediated and C/EBPα-coordinated chromatin remodeling.	CEBPA KDM6B	3.42e-05	3	118	2	27779233
Pubmed	The VP16 activation domain establishes an active mediator lacking CDK8 in vivo.	MED25 CSTF2	3.42e-05	3	118	2	17135252
Pubmed	Fibulin-2 binds to the short arms of laminin-5 and laminin-1 via conserved amino acid sequences.	LAMA5 FBLN2	3.42e-05	3	118	2	9006922
Pubmed	Rapid chromatin repression by Aire provides precise control of immune tolerance.	FOXN1 SMARCA4	3.42e-05	3	118	2	29335648
Pubmed	Insm1 regulates mTEC development and immune tolerance.	FOXN1 INSM1	3.42e-05	3	118	2	37990032
Pubmed	Loss of Scar/WAVE complex promotes N-WASP- and FAK-dependent invasion.	WASL WASF1	3.42e-05	3	118	2	23273897
Pubmed	Proteins recruited by SH3 domains of Ruk/CIN85 adaptor identified by LC-MS/MS.	WASL INPPL1 SH3BP2 ASAP1 FAM83G	3.48e-05	108	118	5	19531213
Pubmed	Combinatorial CRISPR screen identifies fitness effects of gene paralogues.	KMT2B ZC3H6 PAXBP1 ZC3H4 SMARCA4 CSTF2	4.33e-05	186	118	6	33637726
Pubmed	The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei.	BCL9L KMT2B NUMBL SCAF8 SAMD4B RBM42 LAMA5 DGKZ REPIN1 AKAP8L MYEF2 SCAF1 PBRM1 PAXBP1 STRN4 MED25	4.75e-05	1497	118	16	31527615
Pubmed	The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo.	IRX5 CEBPA ID3 BARHL1 SKOR1 SMARCA4	5.02e-05	191	118	6	24146773
Pubmed	A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning.	ERF NEDD4L NUMBL INPPL1 SH3BP2 SAMD4B DGKZ CC2D1A FAM98B AKAP8L TBC1D12 PPP1R35 DIAPH3	5.34e-05	1038	118	13	26673895
Pubmed	Phenotypic and Interaction Profiling of the Human Phosphatases Identifies Diverse Mitotic Regulators.	NUMBL BAG3 PTPN23 TSC1 AKAP8L ASAP1 GSE1 FAM171A2 TLE3 CSTF2 SCRIB WASF1 SIX2	5.94e-05	1049	118	13	27880917
Pubmed	Nuclear actin interactome analysis links actin to KAT14 histone acetyl transferase and mRNA splicing.	WASL CHERP KMT2B PAXBP1 ZC3H4 FUBP1 SMARCA4 CSTF2 SF3B2	5.99e-05	506	118	9	30890647
Pubmed	HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation.	GBF1 CEBPA NEDD4L RBM42 CC2D1A FAM98B REPIN1 FBXO46 AKAP8L SCAF1 PBRM1 PAXBP1 SMARCA4 CENPV SF3B2	6.43e-05	1371	118	15	36244648
Pubmed	Temporal recruitment of transcription factors and SWI/SNF chromatin-remodeling enzymes during adipogenic induction of the peroxisome proliferator-activated receptor gamma nuclear hormone receptor.	CEBPA SMARCA4	6.82e-05	4	118	2	15143161
Pubmed	Structure-function evolution of the transforming acidic coiled coil genes revealed by analysis of phylogenetically diverse organisms.	TACC2 RXRB	6.82e-05	4	118	2	15207008
Pubmed	WAVE and Arp2/3 jointly inhibit filopodium formation by entering into a complex with mDia2.	DIAPH3 WASF1	6.82e-05	4	118	2	18516090
Pubmed	SZT2 maintains hematopoietic stem cell homeostasis via nutrient-mediated mTORC1 regulation.	SZT2 TSC1	6.82e-05	4	118	2	36250465
Pubmed	Stromal Pbrm1 mediates chromatin remodeling necessary for embryo implantation in the mouse uterus.	PBRM1 SMARCA4	6.82e-05	4	118	2	38426493
Pubmed	Repressive LTR nucleosome positioning by the BAF complex is required for HIV latency.	PBRM1 SMARCA4	6.82e-05	4	118	2	22140357
Pubmed	Mammalian chromatin remodeling complex SWI/SNF is essential for enhanced expression of the albumin gene during liver development.	CEBPA SMARCA4	6.82e-05	4	118	2	16452305
Pubmed	Identification of the hypoxia-inducible factor 2α nuclear interactome in melanoma cells reveals master proteins involved in melanoma development.	AKAP8L MED25 SMARCA4 MED26	7.71e-05	66	118	4	23275444
Pubmed	Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries.	NEDD4L SCAF8 TSC1 ASAP1 GSE1 TLE3 RERE SCRIB	7.83e-05	407	118	8	12693553
Pubmed	Enhancer recruitment of transcription repressors RUNX1 and TLE3 by mis-expressed FOXC1 blocks differentiation in acute myeloid leukemia.	CEBPA HNRNPUL1 FUBP1 TLE3 SMARCA4	8.74e-05	131	118	5	34551306
Pubmed	SRCAP complex promotes lung cancer progression by reprograming the oncogenic transcription of Hippo-YAP/TAZ signaling pathway.	KMT2B BAG3 PTPN23 CC2D1A STRN4 SMARCA4 CSTF2 DIAPH3 SCRIB	1.11e-04	549	118	9	38280479
Pubmed	MyoD targets chromatin remodeling complexes to the myogenin locus prior to forming a stable DNA-bound complex.	MYEF2 SMARCA4	1.13e-04	5	118	2	15870273
Pubmed	Development of monoclonal antibodies against GBF1 and their use in studying its functions.	GBF1 IRF9	1.13e-04	5	118	2	16318580
Pubmed	Influence of the C terminus of Wiskott-Aldrich syndrome protein (WASp) and the Arp2/3 complex on actin polymerization.	WASL WASF1	1.13e-04	5	118	2	10563804
Pubmed	The adapter protein CrkII regulates neuronal Wiskott-Aldrich syndrome protein, actin polymerization, and tension development during contractile stimulation of smooth muscle.	WASL WASF1	1.13e-04	5	118	2	15834156
Pubmed	FBP11 regulates nuclear localization of N-WASP and inhibits N-WASP-dependent microspike formation.	WASL WASF1	1.13e-04	5	118	2	14697212
Pubmed	A conserved amphipathic helix in WASP/Scar proteins is essential for activation of Arp2/3 complex.	WASL WASF1	1.13e-04	5	118	2	12872157
Pubmed	Age-related obesity and type 2 diabetes dysregulate neuronal associated genes and proteins in humans.	VGF BAG3	1.13e-04	5	118	2	26337083
Pubmed	Integration of multiple signals through cooperative regulation of the N-WASP-Arp2/3 complex.	WASL WASF1	1.13e-04	5	118	2	11052943
Pubmed	A cancer-associated RING finger protein, RNF43, is a ubiquitin ligase that interacts with a nuclear protein, HAP95.	RNF43 AKAP8L	1.13e-04	5	118	2	18313049
Pubmed	WNK4 inhibition of ENaC is independent of Nedd4-2-mediated ENaC ubiquitination.	NEDD4L WNK4	1.13e-04	5	118	2	23594824
Pubmed	EOMES interacts with RUNX3 and BRG1 to promote innate memory cell formation through epigenetic reprogramming.	IRF9 SMARCA4	1.13e-04	5	118	2	31341159
Pubmed	Proteome-scale mapping of binding sites in the unstructured regions of the human proteome.	GBF1 NEDD4L INPPL1 POM121C ASAP1 RASAL3 PIP4P1 WNK4	1.14e-04	430	118	8	35044719
Pubmed	Reciprocal interaction between SIRT6 and APC/C regulates genomic stability.	HNRNPUL1 POM121C AKAP8L MYEF2 PBRM1 TBC1D12 SMARCA4 SCRIB	1.34e-04	440	118	8	34244565
Pubmed	Agonist-specific Protein Interactomes of Glucocorticoid and Androgen Receptor as Revealed by Proximity Mapping.	GSE1 TLE3 SMARCA4 CENPV	1.48e-04	78	118	4	28611094
Pubmed	RNA-binding proteins with basic-acidic dipeptide (BAD) domains self-assemble and aggregate in Alzheimer's disease.	CHERP SAMD4B RBM42 HNRNPUL1 AKAP8L MYEF2 PAXBP1 ZC3H4 CSTF2 SF3B2	1.65e-04	713	118	10	29802200
Pubmed	A synaptic nidogen: developmental regulation and role of nidogen-2 at the neuromuscular junction.	COL4A5 LAMA5	1.70e-04	6	118	2	18817539
Pubmed	Identification of splicing variants of Rapostlin, a novel RND2 effector that interacts with neural Wiskott-Aldrich syndrome protein and induces neurite branching.	WASL PLXNB1	1.70e-04	6	118	2	14732713
Pubmed	Jmjd3 and UTX play a demethylase-independent role in chromatin remodeling to regulate T-box family member-dependent gene expression.	KDM6B SMARCA4	1.70e-04	6	118	2	21095589
Pubmed	Sipl1 and Rbck1 are novel Eya1-binding proteins with a role in craniofacial development.	RBCK1 SIX2	1.70e-04	6	118	2	20956555
Pubmed	SRG3/mBAF155 stabilizes the SWI/SNF-like BAF complex by blocking CHFR mediated ubiquitination and degradation of its major components.	CHFR SMARCA4	1.70e-04	6	118	2	22285184
Pubmed	Progenitor translatome changes coordinated by Tsc1 increase perception of Wnt signals to end nephrogenesis.	TSC1 SIX2	1.70e-04	6	118	2	34732708
Pubmed	Menin and Menin-Associated Proteins Coregulate Cancer Energy Metabolism.	POM121C MYEF2 GSE1 ZC3H4 FUBP1 TLE3 SF3B2	1.70e-04	341	118	7	32971831
Pubmed	Proteomic analysis of the cullin 4B interactome using proximity-dependent biotinylation in living cells.	HNRNPUL1 POM121C FUBP1 SMARCA4 CSTF2	1.81e-04	153	118	5	28225217
Pubmed	WW domains provide a platform for the assembly of multiprotein networks.	WASL CHERP HNRNPUL1 TLE3 SF3B2	1.87e-04	154	118	5	16055720
Pubmed	New roles for the de-ubiquitylating enzyme OTUD4 in an RNA-protein network and RNA granules.	SAMD4B HNRNPUL1 AKAP8L MYEF2 FUBP1 PIP4P1 PPP1R35 WNK4	1.87e-04	462	118	8	31138677
Pubmed	Identifying biological pathways that underlie primordial short stature using network analysis.	CHERP NEDD4L HNRNPUL1 MYEF2 SCAF1 PBRM1 ZC3H4 FUBP1 SMARCA4 CSTF2 SCRIB SF3B2	1.94e-04	1024	118	12	24711643
Pubmed	Gfi1b regulates the level of Wnt/β-catenin signaling in hematopoietic stem cells and megakaryocytes.	BCL9L TLE3 SMARCA4	2.11e-04	34	118	3	30894540
Pubmed	The core SWI/SNF catalytic subunit Brg1 regulates nephron progenitor cell proliferation and differentiation.	PBRM1 SMARCA4 SIX2	2.30e-04	35	118	3	32504627
Pubmed	Serum and glucocorticoid-induced kinase (SGK) 1 and the epithelial sodium channel are regulated by multiple with no lysine (WNK) family members.	NEDD4L WNK4	2.37e-04	7	118	2	20525693
Pubmed	Histone demethylase JMJD2B functions as a co-factor of estrogen receptor in breast cancer proliferation and mammary gland development.	PBRM1 SMARCA4	2.37e-04	7	118	2	21445275
Pubmed	Functional genomic screen for modulators of ciliogenesis and cilium length.	PTPN23 ASAP1	2.37e-04	7	118	2	20393563
Pubmed	A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration.	KMT2B NUMBL RBM42 MBD6 SCAF1 FBLN2 CSTF2 RERE GTPBP3	2.37e-04	608	118	9	16713569
Pubmed	A Compendium of RNA-Binding Proteins that Regulate MicroRNA Biogenesis.	CHERP FAM98B MYEF2 PAXBP1 CSTF2 SF3B2	2.38e-04	254	118	6	28431233
Pubmed	HSF1 phosphorylation establishes an active chromatin state via the TRRAP-TIP60 complex and promotes tumorigenesis.	BCL9L CHERP VMAC SCAF8 LAMA5 PTPN23 CC2D1A FUBP1 SMARCA4 SF3B2	2.57e-04	754	118	10	35906200
Interaction	TLE3 interactions	BCL9L CEBPA CHERP SCAF8 AKAP8L TLX2 PAXBP1 GSE1 TLE3 SMARCA4 CSTF2 RERE SIX2	2.90e-07	376	117	13	int:TLE3
Interaction	TOP3B interactions	COL4A5 CRYBG2 GBF1 KMT2B SZT2 INPPL1 SAMD4B EMID1 LAMA5 CC2D1A KDM6B MBD6 POM121C ZNF865 REPIN1 FBXO46 RNF43 AKAP8L C8orf58 SCAF1 STRN4 ANKRD34A CENPV	1.07e-05	1470	117	23	int:TOP3B
Interaction	SNRNP40 interactions	BCL9L CEBPA CHERP KMT2B SCAF8 RBM42 HNRNPUL1 POM121C SCAF1 PAXBP1 GSE1 ZC3H4 FUBP1 SMARCA4	1.98e-05	637	117	14	int:SNRNP40
Cytoband	Ensembl 112 genes in cytogenetic band chr19q13	CEBPA KMT2B ERF NUMBL SAMD4B RBM42 MEIS3 HNRNPUL1 FAM90A27P ZNF865 FBXO46 SCAF1 ZC3H4 STRN4 MED25	4.50e-07	1192	118	15	chr19q13
Cytoband	Ensembl 112 genes in cytogenetic band chr19p13	CHERP VMAC PLPPR3 CC2D1A HCN2 AKAP8L RASAL3 SMARCA4 GTPBP3 MED26	4.25e-05	797	118	10	chr19p13
Cytoband	17q21.31	LRRC37A2 LRRC37A FAM171A2 KIF18B	6.21e-05	82	118	4	17q21.31
Cytoband	19p13.12	CC2D1A AKAP8L RASAL3	2.97e-04	50	118	3	19p13.12
Cytoband	Xq22	COL4A5 FRMPD3	1.46e-03	22	118	2	Xq22
Cytoband	7q22.1	VGF ZSCAN25 PPP1R35	3.16e-03	113	118	3	7q22.1
GeneFamily	TALE class homeoboxes and pseudogenes	IRX5 MEIS3 MEIS3P2	2.09e-04	26	81	3	526
Coexpression	BLANCO_MELO_INFLUENZA_A_INFECTION_A594_CELLS_DN	BCL9L CEBPA ERF RASSF10 RNF43 FAM171A2 OVCA2	1.09e-06	118	118	7	M34005
Coexpression	DELACROIX_RAR_BOUND_ES	CEBPA OTUD5 INPPL1 KDM6B MBD6 RXRB TLX2 SALL2 RASAL3 GSE1 BARHL1	8.47e-06	465	118	11	M2466
Coexpression	DELACROIX_RAR_BOUND_ES	CEBPA OTUD5 INPPL1 KDM6B MBD6 RXRB TLX2 SALL2 RASAL3 GSE1 BARHL1	1.46e-05	493	118	11	MM1079
Coexpression	GSE20366_CD103_POS_VS_CD103_KLRG1_DP_TREG_UP	AMPD3 OTUD5 ZSCAN25 ZC3H6 IKZF4 ASAP1 FUBP1	3.50e-05	200	118	7	M4344
CoexpressionAtlas	gudmap_RNAseq_e11.5_Ureteric_stalks_2500_K0	VMAC INPPL1 SH3BP2 SAMD5 MEIS3 FAM98B ZSCAN25 ACVR2B KDM6B MBD6 ZNF865 REPIN1 SCAF1 RASAL3 PPP1R35 SCRIB OVCA2 WASF1 SIX2 WNK4 PLXNB1	4.39e-06	1275	115	21	gudmap_RNAseq_e11.5_Ureteric_stalks_2500_K0
ToppCell	facs-Mammary_Gland-Mammary_Gland-21m\|Mammary_Gland / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	BCL9L IRX5 CEBPA ERF SAMD4B KDM6B IKZF4 SMARCA4	3.64e-08	186	118	8	bd1185592aedebccd1007dbf2dd2f549fcdf9f42
ToppCell	facs-Mammary_Gland-Mammary_Gland-21m-Epithelial\|Mammary_Gland / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	IRX5 CEBPA ERF SAMD4B KDM6B IKZF4 SMARCA4	7.35e-07	189	118	7	965e0e388251e7318f8b463816dc96ccb4658677
ToppCell	Globus_pallidus\|World / BrainAtlas - Mouse McCarroll V32	COL11A2 SZT2 CLIC6 ACVR2B KDM6B MBD6	1.09e-06	126	118	6	44b63f945d5bedf1a2ca1810e7e100276ea9dd89
ToppCell	343B-Lymphocytic-CD4_T-cell-Treg_cell_4\|CD4_T-cell / Donor, Lineage, Cell class and subclass (all cells)	WASL NEDD4L SH3BP2 RBM42 MEIS3 ACVR2B	9.42e-06	183	118	6	3cbe0175d05fd39bc430de1ef471ff2c5b56460e
ToppCell	Adult-Epithelial-alveolar_epithelial_cell_type_1-D122\|Adult / Lineage, Cell type, age group and donor	COL4A5 NEDD4L LAMA5 TACC2 PTPRQ DIAPH3	9.72e-06	184	118	6	561592edc3083fad41b91811151b442207c65dd9
ToppCell	droplet-Thymus-nan-18m-Lymphocytic-double_negative_T_cell\|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ERF SH3BP2 TACC2 KDM6B SALL2 FUBP1	1.17e-05	190	118	6	84265be128170cbb08d76e824aa108e07da9c3e5
ToppCell	facs-Mammary_Gland-Mammary_Gland-21m-Epithelial-basal_cell\|Mammary_Gland / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ERF EMID1 BAG3 KDM6B IKZF4 FAM83G	1.20e-05	191	118	6	8691eba35793e4e90f93d50c2145847ee51289f7
ToppCell	PCW_05-06-Epithelial-Epithelial_proliferating-epi_proliferating1_(8)\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	CRYBG2 IRX5 RASSF10 CLIC6 RBBP8NL MYEF2	1.31e-05	194	118	6	20f81f457ab0a404600effe8beb91fe73d1cfc10
ToppCell	10x_3'_v2v3-Neoplastic-Stem-like-NPC-like-NPC-like_OPC-F\|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	NEU4 INSM1 BAG3 RASSF10 SCNN1D WASF1	1.43e-05	197	118	6	d9a5b6171867de21d4ef12aa5a802fb4de9e0c00
ToppCell	LPS_anti-TNF-Epithelial_alveolar-AT_1-Differentiating_AT2\|LPS_anti-TNF / Treatment groups by lineage, cell group, cell type	COL4A5 RNF43 SMARCA4 PPP1R35 FRMPD3 PLXNB1	1.43e-05	197	118	6	3d13a4f2e86422900ee2194e8a1fd1cf9750d5d3
ToppCell	Smart-start-Cell-Wel_seq-Neoplastic-Differentiated-like-MES-like-MES-like_hypoxia/MHC-F\|Smart-start-Cell-Wel_seq / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	WASL LAMA5 ID3 POM121C IRF9 WNK4	1.47e-05	198	118	6	399760b6b6fef8639ded53b14f251b9fce600e81
ToppCell	TCGA-Bile_Duct-Primary_Tumor-Cholangiocarcinoma\|TCGA-Bile_Duct / Sample_Type by Project: Shred V9	INPPL1 HNRNPUL1 SCAF1 FUBP1 STRN4 SMARCA4	1.56e-05	200	118	6	ad2a6da0b1ae7a9212a3c91e5eec4baa7481d8dc
ToppCell	Brain_organoid-organoid_Tanaka_cellReport-5w-Neuronal-Intermediate\|5w / Sample Type, Dataset, Time_group, and Cell type.	VGF NEDD4L INSM1 ACVR2B KDM6B GSE1	1.56e-05	200	118	6	c92e4fc0442404481fcac623d691dae6215b852d
ToppCell	TCGA-Bile_Duct-Primary_Tumor\|TCGA-Bile_Duct / Sample_Type by Project: Shred V9	INPPL1 HNRNPUL1 SCAF1 FUBP1 STRN4 SMARCA4	1.56e-05	200	118	6	0350e5ffd36033099b7e32a1fdd790fff99790dc
ToppCell	PBMC-Severe-Myeloid-cDC-cDC-cDC_8\|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	CEBPA ID3 HCN2 FBLN2 TBC1D12	3.71e-05	141	118	5	737237db115721524c44ea4c55aed000e1b00ee5
ToppCell	PBMC-Severe-Myeloid-cDC-cDC-cDC_8\|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	CEBPA ID3 HCN2 FBLN2 TBC1D12	3.71e-05	141	118	5	c14f84bc3921cafbce6fa7f7163ecf3cd9cdf073
ToppCell	Children_(3_yrs)-Epithelial-alveolar_epithelial_cell_type_1/2_(AT1/AT2-like)-D139\|Children_(3_yrs) / Lineage, Cell type, age group and donor	NEDD4L LAMA5 TACC2 CLIC6 MAST4	6.56e-05	159	118	5	8680b054622f573a82b1625fb93c2d5db81d1034
ToppCell	TCGA-Ovary-Primary_Tumor-Ovarian_Carcinoma-Serous_Cystadenocarcinoma-5\|TCGA-Ovary / Sample_Type by Project: Shred V9	CHERP SZT2 PTPN23 ZSCAN25 PLXNB1	8.05e-05	166	118	5	32d2eaf8a5d03881bf74d680825af2d5110b082d
ToppCell	Posterior_cortex-Macroglia-POLYDENDROCYTE\|Posterior_cortex / BrainAtlas - Mouse McCarroll V32	NEU4 COL11A2 INPPL1 RASSF10 DIAPH3	8.05e-05	166	118	5	a7ac5a414e3e2ff01f1c452c0a85048b17cba0b6
ToppCell	droplet-Pancreas-Exocrine-21m-Epithelial-pancreatic_ductal_cel\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	COL4A5 IRX5 SAMD5 LAMA5 CLIC6	9.51e-05	172	118	5	c0bda7153e02bee7d0326138cc684151c404c2a1
ToppCell	droplet-Pancreas-Exocrine-21m-Epithelial-pancreatic_ductal_cell\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	COL4A5 IRX5 CLIC6 C8orf58 KIF18B	1.00e-04	174	118	5	a0ccda8fd6f55251cdeff24cf66e72e4a31d2104
ToppCell	facs-Lung-Endomucin-24m-Lymphocytic-regulatory_T_cell\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CCDC69 IRX5 SAMD4B MEIS3 IKZF4	1.03e-04	175	118	5	a2adaa09f37e3db5d819e56ed402fe04b72abeb2
ToppCell	facs-Lung-Endomucin-24m-Lymphocytic-Regulatory_T\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CCDC69 IRX5 SAMD4B MEIS3 IKZF4	1.03e-04	175	118	5	59a8481a3b4ed63b137baea25bc02f2078dc3ac7
ToppCell	facs-Limb_Muscle-ForelimbandHindlimb-24m-Mesenchymal-nan\|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ERF BAG3 ID3 KDM6B SIX2	1.09e-04	177	118	5	ea2c2d2d7ffd34780882299229ff8614fdd7c79c
ToppCell	facs-Limb_Muscle-ForelimbandHindlimb-24m-Mesenchymal\|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ERF BAG3 ID3 KDM6B SIX2	1.09e-04	177	118	5	63b5ebbe505f22091bc7b0db818e01fae5d92bb7
ToppCell	facs-Heart-RA-18m\|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CEBPA HNRNPUL1 KDM6B FAM171A2 SF3B2	1.12e-04	178	118	5	b505e2550860e777535ee95f29c936242fd607f1
ToppCell	3'-Pediatric_IBD-SmallIntestine-Epithelial-mature_enterocytic-Paneth\|Pediatric_IBD / Celltypes from developing, pediatric, Crohn's, & adult GI tract	SAMD5 DUOX2 RNF43 BARHL1 OVCA2	1.15e-04	179	118	5	6405010e8136a4d9bab356f628e36e3194911112
ToppCell	3'-GW_trimst-1.5-SmallIntestine-Epithelial-epithelial_progenitor_cell-Proximal_progenitor\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	ACVR2B REPIN1 RNF43 FAM83G SLC16A10	1.18e-04	180	118	5	8d9be9cfdf98e5888654a28ab12e5e89f201af00
ToppCell	facs-Lung-18m-Endothelial-arterial_endothelial-pulmonary_artery_endothelial_cell-pulmonary_artery_endothelial_cell_l25\|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	SAMD5 TACC2 FBLN2 KIF18B HS3ST4	1.18e-04	180	118	5	67c5068b660cd5e727a665cefe3bd5f8ae887221
ToppCell	droplet-Lung-nan-18m-Myeloid-Proliferating_Alveolar_Macrophage\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	TACC2 MEIS3 MYEF2 DIAPH3 KIF18B	1.18e-04	180	118	5	43fd5c498a87bb078d101298b472656f3294686a
ToppCell	Control-Epithelial_cells-Airway_club\|Control / group, cell type (main and fine annotations)	NEDD4L TACC2 CLIC6 MAST4 HS3ST4	1.21e-04	181	118	5	c755d23dd9aabc717dc73e2b3fa99a1f751e6507
ToppCell	PND14-Immune-Immune_Myeloid-Monocytic-Macrophage-AM-AM_G2M\|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	CEBPA DIAPH3 KIF18B WNK4 SLC16A10	1.24e-04	182	118	5	21dcab170ffeef89faa9fee5008568cb6e15c694
ToppCell	PCW_07-8.5-Neuronal-Neuronal_SCP-neuro_proliferating_SCP2_(1)\|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung	COL11A2 INSM1 MYEF2 TLX2 HS3ST4	1.27e-04	183	118	5	e0854864d377e158a4793088d1cb6b3dbf2c805d
ToppCell	droplet-Lung-18m-Hematologic-myeloid-alveolar_macrophage-proliferating_alveolar_macrophage\|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	TACC2 MEIS3 MYEF2 DIAPH3 KIF18B	1.27e-04	183	118	5	e91f00b75d43ee6293fdd4a129b789cd95f8d11a
ToppCell	nucseq-Epithelial-Epithelial_Alveolar-AT1-AT1\|nucseq / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	COL4A5 NEDD4L LAMA5 PTPRQ DIAPH3	1.30e-04	184	118	5	57c792e6e2fedba25d3350ffe649fd74750b579d
ToppCell	facs-Brain_Non-Myeloid-Cortex_-18m-Macroglial-Oligodendrocyte_progenitor_cell\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	NEU4 AMPD3 EMID1 PRR16 ELFN1	1.30e-04	184	118	5	278a7ed764c326450cb70e69ed2175980eaf5fe0
ToppCell	RSV-Healthy-5\|Healthy / Virus stimulation, Condition and Cluster	ID3 REPIN1 IKZF4 LRRC37A MAST4	1.30e-04	184	118	5	1e282d619ef8035437fabe0fd2aefda1c142f7f6
ToppCell	RSV-Healthy-5\|RSV / Virus stimulation, Condition and Cluster	ID3 REPIN1 IKZF4 LRRC37A MAST4	1.30e-04	184	118	5	ba958f731de6c9eff60103d483e020e2c0c7af7c
ToppCell	facs-Brain_Non-Myeloid-Cortex_-18m-Macroglial-oligodendrocyte_precursor_cell\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	NEU4 AMPD3 EMID1 PRR16 ELFN1	1.30e-04	184	118	5	8d86e125257ff1d3af8d90577a8b3f0321eca21c
ToppCell	nucseq-Epithelial-Epithelial_Alveolar-AT1\|nucseq / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	COL4A5 NEDD4L LAMA5 PTPRQ DIAPH3	1.30e-04	184	118	5	d7bd0f0c607bade67c99e9fb3578a570298bf926
ToppCell	Children_(3_yrs)-Epithelial-alveolar_epithelial_cell_type_1\|Children_(3_yrs) / Lineage, Cell type, age group and donor	COL4A5 NEDD4L LAMA5 PTPRQ DIAPH3	1.34e-04	185	118	5	1c222f7285d6e3dae0354dc7e853ddc0ea55e63e
ToppCell	3'-GW_trimst-1.5-SmallIntestine-Epithelial-neuro-epithelial-EECs\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	CLIC6 ZSCAN25 RNF43 WNK4 PLXNB1	1.34e-04	185	118	5	d42f6722a6771752cd744146a09e2ead9b7252bc
ToppCell	343B-Lymphocytic-CD4_T-cell-Treg_cell_4\|Lymphocytic / Donor, Lineage, Cell class and subclass (all cells)	WASL NEDD4L BAG3 MEIS3 ACVR2B	1.37e-04	186	118	5	bca5215d406f1785bf3a420201d5686071fcaca5
ToppCell	390C-Lymphocytic-CD4_T-cell-Treg_cell_3\|Lymphocytic / Donor, Lineage, Cell class and subclass (all cells)	OTUD5 ID3 IKZF4 FBLN2 MAST4	1.37e-04	186	118	5	74eb69a52090f9e2426a47e03a1c478ee0cfec18
ToppCell	pdx-Tumor_cells-T5\|Tumor_cells / Sample and Cell Type and Tumor Cluster (all cells)	LAMA5 FBLN2 CACNA1I RERE HS3ST4	1.41e-04	187	118	5	7e376831a11ee72ed87abcdac631ca46ae29c250
ToppCell	Adult-Epithelial-alveolar_epithelial_cell_type_1\|Adult / Lineage, Cell type, age group and donor	COL4A5 NEDD4L LAMA5 PTPRQ DIAPH3	1.41e-04	187	118	5	77f78aec946bc6bd85c29aee9ca978ce49f853a3
ToppCell	facs-Brain_Non-Myeloid-Striatum-3m-Macroglial-oligodendrocyte_precursor_cell\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	NEU4 AMPD3 EMID1 RNF43 ELFN1	1.44e-04	188	118	5	7471c194276161422326647f09022e94f3d1640c
ToppCell	facs-Brain_Non-Myeloid-Striatum-3m-Macroglial-Oligodendrocyte_progenitor_cell\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	NEU4 AMPD3 EMID1 RNF43 ELFN1	1.44e-04	188	118	5	053c251d3ddbeb866f34565aefca4535517b4387
ToppCell	Fetal_29-31_weeks-Epithelial-alveolar_epithelial_cell_type_1/2_(AT1/AT2-like)-D150\|Fetal_29-31_weeks / Lineage, Cell type, age group and donor	COL4A5 NEDD4L CLIC6 MAST4 PTPRQ	1.52e-04	190	118	5	8aea807a2bcf0b653b4de6202b6ecb0f0683cc2e
ToppCell	IPF-Epithelial-Basal\|IPF / Disease state, Lineage and Cell class	COL4A5 NEDD4L LAMA5 TACC2 MAST4	1.52e-04	190	118	5	ea19e9ce954f2dfde97388db9695325cd92ab88f
ToppCell	droplet-Thymus-nan-18m-Lymphocytic-Double_negative_Thymocyte,_DN4_(Cd8-,_Cd4-),_some_undergoing_VDJ_recombination_\|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ERF TACC2 KDM6B SALL2 FUBP1	1.52e-04	190	118	5	8f5e71a0861ee4e8f3ce45e8a7f18fb9d6036a3c
ToppCell	(09)_Interm._secr.>cil.-(0)_Reference\|(09)_Interm._secr.>cil. / shred by cell type by condition	ERF NUMBL MBD6 SCNN1D PLXNB1	1.55e-04	191	118	5	e63432718d62d39165ba8a66e14bb38c93907ffe
ToppCell	facs-Mammary_Gland-Mammary_Gland-21m-Epithelial-basal_cell\|Mammary_Gland / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EMID1 BAG3 KDM6B IKZF4 FAM83G	1.55e-04	191	118	5	2f733d510a4862565a817f59829d8387d7ea26d9
ToppCell	facs-Mammary_Gland-Mammary_Gland-18m-Epithelial-basal_cell\|Mammary_Gland / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ERF BAG3 ID3 KDM6B IKZF4	1.59e-04	192	118	5	c47df468cf78a90929913c9022e8078a53cdf680
ToppCell	PCW_05-06-Epithelial-Epithelial_alveolar-distal-epi_CTGF^high_distal_(3)\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	VGF IRX5 CLIC6 RBBP8NL TLX2	1.67e-04	194	118	5	c5ef4ff73b4e51530656002e3a2fb7264cdf533d
ToppCell	PCW_05-06-Epithelial-Epithelial_alveolar-distal-epi_SOX9^high_Etv5^medium_distal_(2)\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	VGF IRX5 RASSF10 CLIC6 RBBP8NL	1.67e-04	194	118	5	413112ee8df7407fd418d57c2ff11aad3a6ec259
ToppCell	PCW_05-06-Epithelial-Epithelial_alveolar-distal\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	VGF IRX5 RASSF10 CLIC6 RBBP8NL	1.67e-04	194	118	5	acd5ba9a097595d4caab4f05440531c65a4aa7bc
ToppCell	Bronchial-NucSeq-Epithelial-Epi_alveolar-AT1\|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations	COL4A5 NEDD4L LAMA5 PTPRQ DIAPH3	1.71e-04	195	118	5	a71ba5e4043e2d35a45a2c60a96b087e31832345
ToppCell	facs-Mammary_Gland-Mammary_Gland-18m-Epithelial-basal_cell\|Mammary_Gland / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ERF BAG3 ID3 KDM6B IKZF4	1.71e-04	195	118	5	f41a68b7c2621594db8d8952e301eeadc96be26f
ToppCell	Fetal_brain-organoid_Tanaka_cellReport-GW09-Macroglial-Glia_progenitor_cell\|GW09 / Sample Type, Dataset, Time_group, and Cell type.	OTUD5 BAG3 REPIN1 IRF9 MAST4	1.75e-04	196	118	5	7be50b9156394dea44d7b8b476d4dd516abfafae
ToppCell	Smart-start-Cell-Wel_seq-Neoplastic-Differentiated-like-AC-like-AC-like-G\|Smart-start-Cell-Wel_seq / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	VGF LAMA5 ID3 MYEF2 SALL2	1.75e-04	196	118	5	45d1c0a962c4221c17393ee5566961d1deebf442
ToppCell	5'-GW_trimst-2-LargeIntestine-Mesenchymal-fibroblastic-Stromal_2_(NPY+)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL4A5 EMID1 LAMA5 ID3 PRR16	1.79e-04	197	118	5	ea746772adb9df4ddb0508d4ef35f2027bf09c35
ToppCell	5'-GW_trimst-1.5-SmallIntestine-Mesenchymal-fibroblastic-Stromal_2_(NPY+)\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL4A5 EMID1 LAMA5 ID3 PRR16	1.79e-04	197	118	5	2e3d64648a1e4f01b9256a96b94b8a640ee1824c
ToppCell	AT2_cells-Donor_07\|World / lung cells shred on cell class, cell subclass, sample id	BCL9L WASL NEDD4L BAG3 TACC2	1.79e-04	197	118	5	c36513e893488c4299119d4fba6ef0fd72610ee6
ToppCell	5'-GW_trimst-2-SmallIntestine-Mesenchymal-fibroblastic-Stromal_2_(NPY+)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL4A5 EMID1 LAMA5 ID3 PRR16	1.79e-04	197	118	5	1da8ba5bbab232add6e43ad78b15c2339d0c2bc3
ToppCell	3'-GW_trimst-2-SmallIntestine-Mesenchymal-fibroblastic-Stromal_2_(NPY+)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL4A5 EMID1 LAMA5 ID3 PRR16	1.79e-04	197	118	5	d9e196c8b4a6ede4733946dbdba3331534954beb
ToppCell	wk_15-18-Epithelial\|wk_15-18 / Celltypes from embryonic and fetal-stage human lung	IRX5 NEDD4L RASSF10 LAMA5 CLIC6	1.84e-04	198	118	5	12bbe77c3d68bf1e545949dbb1eb49ed3641de3d
ToppCell	NS-critical-d_07-13\|critical / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)	WASL NEDD4L DUOX2 TACC2 CLIC6	1.84e-04	198	118	5	a6e11c87b31beffb6af190c64b4ef3ee1d9dab8d
ToppCell	3'-GW_trimst-1-SmallIntestine-Mesenchymal-fibroblastic-Stromal_2_(NPY+)\|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL4A5 EMID1 LAMA5 ID3 PRR16	1.84e-04	198	118	5	4a4566f86c9365a41b4cfd1609eac09bd73b3f34
ToppCell	distal-1-Hematologic-EREG+_Dendritic\|1 / Location, Lineage, Cell class (ontology) and Donor from 10X sequencing (macrophage renamed)	NEU4 AMPD3 LRRC37A2 ANKRD34A SCNN1D	1.88e-04	199	118	5	15249f2f48b1e99d9d062835fd4c705a159e4abb
ToppCell	Sigmoid-T_cell-cycling_gd_T\|T_cell / Region, Cell class and subclass	GBF1 NUMBL ID3 CSTF2 OVCA2	1.92e-04	200	118	5	4e489ecf472857357d45e9f6c7a812aa48b72ebf
ToppCell	distal-Hematologic-EREG+_Dendritic-1\|distal / Location, Lineage, Cell class (ontology) and Donor from 10X sequencing (macrophage renamed)	NEU4 LRRC37A ANKRD34A SCNN1D SLC16A10	1.92e-04	200	118	5	7809c74a2e52768854b66a135522138281bc4449
ToppCell	Sigmoid-(1)_T_cell-(18)_cycling_gd_T\|Sigmoid / shred on region, Cell_type, and subtype	GBF1 NUMBL ZSCAN25 CSTF2 OVCA2	1.92e-04	200	118	5	6e367abd1a4b87e20eb9095b8337723163e8bbae
ToppCell	Brain_organoid-organoid_Tanaka_cellReport-6m-Neuronal-Neuron\|6m / Sample Type, Dataset, Time_group, and Cell type.	INSM1 KDM6B GSE1 BARHL1 CENPV	1.92e-04	200	118	5	b5019b9d48f32cffd4645a5c0f3e0ac504ea8019
ToppCell	Sigmoid-T_cell-cycling_gd_T\|Sigmoid / Region, Cell class and subclass	GBF1 NUMBL ZSCAN25 CSTF2 OVCA2	1.92e-04	200	118	5	9769185abae084ffac36420c749625e679b70ca8
Drug	Sulfamethazine sodium salt [1981-58-4]; Up 200; 13.4uM; PC3; HT_HG-U133A	CEBPA KMT2B NEDD4L SZT2 MAST4 FUBP1 MED25 SMARCA4	6.71e-06	193	116	8	4322_UP
Drug	2-Chloropyrazine [14508-49-7]; Down 200; 35uM; MCF7; HT_HG-U133A	CCDC69 AMPD3 SH3BP2 EMID1 LAMA5 IRF9 MAST4 SLC16A10	6.96e-06	194	116	8	3570_DN
Disease	Iron deficiency anemia	DUOX2 RNF43	2.20e-04	6	114	2	HP_0001891
Disease	restless legs syndrome (implicated_via_orthology)	MEIS3 MEIS3P2	4.08e-04	8	114	2	DOID:0050425 (implicated_via_orthology)
Disease	Sensory hearing loss	COL11A2 IRX5	7.95e-04	11	114	2	C1691779
Disease	delta-6 desaturase measurement	MAST4 DIAPH3	1.50e-03	15	114	2	EFO_0007765
Disease	Situs ambiguus	BCL9L ACVR2B	1.50e-03	15	114	2	C0266642
Disease	Burkitt Leukemia	ID3 SMARCA4	1.50e-03	15	114	2	C4721444
Disease	African Burkitt's lymphoma	ID3 SMARCA4	1.50e-03	15	114	2	C0343640
Disease	eosinophil count	NEU4 CEBPA CHERP PLPPR3 KDM6B FBXO46 IKZF4 RBCK1 PBRM1 RASAL3 GSE1 TLE3 SMARCA4 RERE	1.81e-03	1488	114	14	EFO_0004842
Disease	Tourette syndrome, schizophrenia	CACNA1I RERE	2.17e-03	18	114	2	EFO_0004895, MONDO_0005090
Disease	leukemia (implicated_via_orthology)	MEIS3 MEIS3P2	2.42e-03	19	114	2	DOID:1240 (implicated_via_orthology)
Disease	intrahepatic cholangiocarcinoma (is_marker_for)	RNF43 PBRM1	2.42e-03	19	114	2	DOID:4928 (is_marker_for)
Disease	Sensorineural Hearing Loss (disorder)	COL11A2 IRX5	3.55e-03	23	114	2	C0018784
Disease	asthma, allergic disease	CEBPA IKZF4 RERE	3.59e-03	79	114	3	MONDO_0004979, MONDO_0005271
Disease	Intrahepatic Cholangiocarcinoma	RNF43 PBRM1	3.86e-03	24	114	2	C0345905
Disease	prostate cancer, disease progression measurement	RBBP8NL HCN2	3.86e-03	24	114	2	EFO_0008336, MONDO_0008315
Disease	Extrahepatic Cholangiocarcinoma	RNF43 PBRM1	3.86e-03	24	114	2	C3805278

Protein segments in the cluster

Peptide	Gene	Start	Entry
RDHLPPAGPPVPLPA	TBC1D12	286	O60347
PAGPPVPLPAAEQGP	TBC1D12	291	O60347
EGAGALAPPPPPPQI	ERF	411	P50548
PPPPPPHEGLGRKAS	ELFN1	721	P0C7U0
PEGPGPGPDLPPHLL	GTPBP3	381	Q969Y2
PPPPPPREGGSLEHQ	GSE1	651	Q14687
PPPPPKHGLPDVGLA	SH3BP2	236	P78314
HGLQGASEPPPPLPP	BARHL1	301	Q9BZE3
HPEPPAPPDGSDPRI	C8orf58	316	Q8NAV2
PQHPPPPSGPEEPGE	DIAPH3	41	Q9NSV4
APGPQGPPEVPAPLA	CLIC6	11	Q96NY7
GPPPHELRGGPLPEP	CSTF2	366	P33240
GAEGVPAQPPVPPEP	AKAP8L	581	Q9ULX6
SPHPPIPDIRPQPGG	ANKRD34A	431	Q69YU3
PEEGLPDFHPPPLPQ	AMPD3	191	Q01432
PEPEQPPRPEPHELG	CCDC69	21	A6NI79
PPRPEPHELGPLNGD	CCDC69	26	A6NI79
RHLPPAPCGAPGPPE	NUMBL	16	Q9Y6R0
GDPHGPGELPEPPNE	RASSF10	56	A6NK89
GRHKNPPPEPDPEPE	RASAL3	91	Q86YV0
RPPHQALVGPPLPGP	RBM42	186	Q9BTD8
PAPGPHPAAGEVPPG	IRX5	296	P78411
PHLFPPQAPGLLPPQ	PTPN23	981	Q9H3S7
APQPGVLGQPPPPLH	PTPN23	1001	Q9H3S7
PPHGSPDPPVPELLT	MBD6	836	Q96DN6
HHLPPGVPGLPGIPP	PBRM1	1521	Q86U86
PPAIQHGGPPLLPES	LRRC37A3	451	O60309
PPAIQHGGPPLLPES	LRRC37A2	451	A6NM11
PPAIQHGGPPLLPES	LRRC37A	451	A6NMS7
KIGGPVNPLGPPVPH	FUBP1	446	Q96AE4
PGRGQPDAVPEPPPV	RBCK1	181	Q9BYM8
IGQPPLPAPLPPSHG	KDM6B	51	O15054
PPPLPHREGFLGPPA	KDM6B	516	O15054
HPQGLGPPAPEAPEL	DUOX2	976	Q9NRD8
PVLQPGPPIHVPGRP	FAM90A27P	376	A6NNH2
PEGHPPQPEAPQEPA	FBLN2	646	P98095
PPADPGPEALHPTVP	PLXNB1	801	O43157
LQNRGPDGPPEPPPA	FBXO46	411	Q6PJ61
PGHPGPPGEVIQPLP	COL11A2	1491	P13942
GPHRPPQPLPPGLDS	MEIS3	36	Q99687
QPPGAPALLPPPHQG	MED25	671	Q71SY5
LGQPQLGPPLLHPPP	MED25	686	Q71SY5
GEGEPVPPPVKQPPL	KMT2B	2206	Q9UMN6
LPEDGPPQVPDGPPD	KMT2B	2361	Q9UMN6
PHRGPPPELQPQPEG	LAMA5	3226	O15230
EQEPPPLLPPPGTGE	PAXBP1	26	Q9Y5B6
PPLLGPGVHEPPEEA	NEU4	306	Q8WWR8
LPGSPKSGPPPEHQP	KIF18B	401	Q86Y91
VDETPGPPHPKGPPR	MED26	256	O95402
GPHRPPQPLPPGLDS	MEIS3P2	36	A8K0S8
LPGPPDGPPENVHVV	PTPRQ	1576	Q9UMZ3
PGPPQPAPAPEGQDL	POM121C	131	A8CG34
PSGDPEAPPPGPLHS	FAM171A2	386	A8MVW0
DEDTGRPLPPPHPQP	RBBP8NL	531	Q8NC74
PPHPQPPDLDGHPEP	RBBP8NL	546	Q8NC74
PPHCPAPEGEPGAPQ	CHFR	441	Q96EP1
RGPGPHDQIPPNKPP	CHERP	406	Q8IWX8
QPPAPPAAPEPLGGI	CEBPA	41	P49715
EDGPHPPPPQTAGLI	FRMPD3	776	Q5JV73
LAPPPQPLPGELEPG	CACNA1I	2201	Q9P0X4
PPGPAGPHIPPSDEI	COL4A5	436	P29400
PLPGPREPSPHPGVG	CRYBG2	146	Q8N1P7
VPGAPHGPPPGLRPD	BCL9L	206	Q86UU0
PPPVAQPKPEAPHPG	CC2D1A	121	Q6P1N0
PRAQEEGPGEPPPPE	CENPV	71	Q7Z7K6
PPSPLPHGPPNKGAV	ASAP1	841	Q9ULH1
PDRGGRPNEIEPPPP	FAM98B	306	Q52LJ0
GFSREHQPPPPPPLG	MAST4	56	O15021
NAPQAPPGPGPHLLP	IRF9	301	Q00978
GDTRTPGHPPPPEIP	GBF1	1746	Q92538
PGHPPPPEIPSELGA	GBF1	1751	Q92538
EPAPGPPDGPHLPIQ	ID3	86	Q02535
PGPPAPVGPPHARIS	EMID1	256	Q96A84
GLQHLAPPPPTPGAP	DGKZ	61	Q13574
PQPPPGEAGIPGHPT	C1orf127	296	Q8N9H9
GPVGPELPPGHIPIQ	BAG3	326	O95817
ALHPPPRGPFPPGDI	SCAF8	961	Q9UPN6
GPPSAPPPPPKEGHQ	SCNN1D	196	P51172
PPPPPKEGHQEGLVE	SCNN1D	201	P51172
PPPPPGVGSGHLNIP	SALL2	166	Q9Y467
GPGPAPPQHPPRAEA	HCN2	46	Q9UL51
INLGPVHPGPLSPEP	PIP4P1	151	Q86T03
PPLDNASHGEPPEPP	HS3ST4	101	Q9Y661
GPPPQPPPTIVVGRH	IKZF4	476	Q9H2S9
PPQGPLPGPPGALHR	OTUD5	66	Q96G74
HPLTPPSLPPEAGGP	PCARE	1141	A6NGG8
AQPPPPGLQPHAEPG	HNRNPUL1	76	Q9BUJ2
GPLPPPPPAERAHAA	INSM1	51	Q01101
PARPPQDPAEIPGPG	ODF3L2	191	Q3SX64
NGLPQGDPEPLPPVP	FAM83G	491	A6ND36
PPLPPPEEERHPGLS	SZT2	1666	Q5T011
DEAAGPPGPPPPHPQ	SKOR1	331	P84550
GAAPPGRPEAQPPPL	VGF	21	O15240
VETHPAPGPLPPPEV	SPATA21	36	Q7Z572
LEPQPAPPGPPADAV	SAMD5	76	Q5TGI4
QPAEPPGEPRREPHP	MYEF2	21	Q9P2K5
GPPQPLFPQPDGHLE	FOXN1	466	O15353
LPPTPHLPPFPLENG	PRR16	251	Q569H4
LPPQARAPHPKEPPG	PPP1R35	186	Q8TAP8
PRQPLEPHPPGEGPS	RNF43	731	Q68DV7
PPPAGVNPDLEEPPL	SMARCA4	1276	P51532
GVPHQLLPPEPPSPA	INPPL1	991	O15357
PLLQHPGPPQPFGLP	RERE	861	Q9P2R6
PPGTLPNPLLGQPPH	RERE	1471	Q9P2R6
HPPEDAPAQPPTPGP	SCRIB	1331	Q14160
CLSGPHPVPDPPGPE	OVCA2	41	Q8WZ82
PPGAPPEHPQDPIEA	REPIN1	356	Q9BWE0
PPVLGVRGLHCPPPP	RXRB	181	P28702
DIHEDPGPPPPSPLV	ACVR2B	171	Q13705
AELQLPPPPPPGHYG	SF3B2	11	Q13435
IPLNLDGPHPSPPTP	TSC1	1131	Q92574
DVPPAAGGPPQPGPH	ZNF865	276	P0CJ78
QPGPHLPPLGLPAPA	ZNF865	286	P0CJ78
KPPPGVGLLPTPPEH	ZC3H6	391	P61129
RPEHPPPAPTGQDDP	TMEM175	481	Q9BSA9
GEPPLPGAEPPLAHP	SAMD4B	416	Q5PRF9
PRAGPPPLVHIPEEG	PLPPR3	486	Q6T4P5
PLPQPPAPRAPEGDD	SCAF1	431	Q9H7N4
APGLPPPQHGAIPLP	ZSCAN25	321	Q6NSZ9
SHEVQPGVPPPPLPK	TACC2	506	O95359
PGVPPPPLPKEQSHE	TACC2	511	O95359
LGHPPGPSAVPVPVP	SIX2	246	Q9NPC8
PVQLPPHPSGLQPPG	TLE3	141	Q04726
PHPSGLQPPGIPPVT	TLE3	146	Q04726
PPPEGAPPQPGVHNL	ZC3H4	1236	Q9UPT8
TGPPPGTPQPRPHED	STRN4	371	Q9NRL3
PVHPLPQGEVQGLPP	WASF1	411	Q92558
PPPPGLPSDGDHQVP	WASL	386	O00401
RLGPLPASDPGHPPP	VMAC	126	Q2NL98
PSLPLPPPVAPGGQE	WNK4	961	Q96J92
HRPLPVPPPAGGAPA	TLX2	86	O43763
AGPATAEPHEPPEPP	SLC16A10	51	Q8TF71
HQEELPPPPLPPGWE	NEDD4L	186	Q96PU5