Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctioncysteine-type deubiquitinase activity

USP15 USP34 USP4

2.58e-04114223GO:0004843
GeneOntologyMolecularFunctiondeubiquitinase activity

USP15 USP34 USP4

3.30e-04124223GO:0101005
GeneOntologyMolecularFunctionRNA nuclease activity

XRN2 ERI3 SLFN14

4.33e-04136223GO:0004540
GeneOntologyMolecularFunctionubiquitin-like protein peptidase activity

USP15 USP34 USP4

4.42e-04137223GO:0019783
GeneOntologyMolecularFunctioncatalytic activity, acting on a nucleic acid

CMTR2 MSH6 XRN2 ERI3 SLFN14

5.77e-04645225GO:0140640
GeneOntologyMolecularFunction3'-5'-RNA exonuclease activity

XRN2 ERI3

7.54e-0437222GO:0000175
GeneOntologyMolecularFunctionRNA exonuclease activity, producing 5'-phosphomonoesters

XRN2 ERI3

8.81e-0440222GO:0016896
GeneOntologyMolecularFunctioncatalytic activity, acting on RNA

CMTR2 XRN2 ERI3 SLFN14

1.02e-03417224GO:0140098
GeneOntologyMolecularFunctionRNA exonuclease activity

XRN2 ERI3

1.11e-0345222GO:0004532
GeneOntologyMolecularFunctioncysteine-type peptidase activity

USP15 USP34 USP4

1.18e-03192223GO:0008234
GeneOntologyMolecularFunctionnuclease activity

XRN2 ERI3 SLFN14

2.00e-03231223GO:0004518
GeneOntologyMolecularFunction3'-5' exonuclease activity

XRN2 ERI3

2.04e-0361222GO:0008408
GeneOntologyMolecularFunctionexonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters

XRN2 ERI3

2.11e-0362222GO:0016796
GeneOntologyMolecularFunctioncysteine-type endopeptidase activity

USP15 USP34

4.00e-0386222GO:0004197
GeneOntologyMolecularFunctionexonuclease activity

XRN2 ERI3

4.57e-0392222GO:0004527
GeneOntologyMolecularFunctionmonosaccharide binding

MRC1 SIGLEC7

4.86e-0395222GO:0048029
GeneOntologyMolecularFunctionpeptidase activity

USP15 USP34 SCPEP1 USP4

5.21e-03654224GO:0008233
MousePhenodecreased susceptibility to parasitic infection induced morbidity/mortality

USP15 MRC1

8.33e-0515132MP:0010751
DomainUb_USP-typ

USP15 USP4

7.94e-064222IPR028135
DomainUbiquitin_3

USP15 USP4

7.94e-064222PF14836
DomainDUSP

USP15 USP4

1.98e-056222SM00695
DomainDUSP

USP15 USP4

1.98e-056222PF06337
Domain-

USP15 USP4

2.77e-0572223.30.2230.10
DomainPept_C19_DUSP

USP15 USP4

2.77e-057222IPR006615
DomainDUSP

USP15 USP4

2.77e-057222PS51283
DomainUSP_CS

USP15 USP34 USP4

6.19e-0566223IPR018200
DomainUSP_1

USP15 USP34 USP4

7.38e-0570223PS00972
DomainUCH

USP15 USP34 USP4

7.70e-0571223PF00443
DomainUSP_2

USP15 USP34 USP4

7.70e-0571223PS00973
DomainUSP_3

USP15 USP34 USP4

8.03e-0572223PS50235
DomainUSP_dom

USP15 USP34 USP4

8.03e-0572223IPR028889
DomainPeptidase_C19_UCH

USP15 USP34 USP4

8.03e-0572223IPR001394
Pubmed

Activity-based chemical proteomics accelerates inhibitor development for deubiquitylating enzymes.

RAE1 USP15 USP4

7.12e-072822322118674
Pubmed

Structural variability of the ubiquitin specific protease DUSP-UBL double domains.

USP15 USP4

1.15e-06322222001210
Pubmed

Phosphorylation of USP15 and USP4 Regulates Localization and Spliceosomal Deubiquitination.

USP15 USP4

1.15e-06322231330151
Pubmed

Evolution of the highly networked deubiquitinating enzymes USP4, USP15, and USP11.

USP15 USP4

1.15e-06322226503449
Pubmed

Discovery and Characterization of ZUFSP/ZUP1, a Distinct Deubiquitinase Class Important for Genome Stability.

USP15 USP34 MSH6 USP4

2.11e-0614722429576527
Pubmed

Structural basis for recruiting and shuttling of the spliceosomal deubiquitinase USP4 by SART3.

USP15 USP4

2.29e-06422227060135
Pubmed

USP15 regulates dynamic protein-protein interactions of the spliceosome through deubiquitination of PRP31.

USP15 USP4

5.72e-06622228088760
Pubmed

Reciprocal interaction between SIRT6 and APC/C regulates genomic stability.

RAE1 USP15 MSH6 XRN2 AGPS

6.99e-0644022534244565
Pubmed

USP4 is regulated by AKT phosphorylation and directly deubiquitylates TGF-β type I receptor.

USP15 USP4

1.07e-05822222706160
Pubmed

USP4 Auto-Deubiquitylation Promotes Homologous Recombination.

USP15 USP4

1.07e-05822226455393
Pubmed

Human and mouse proteases: a comparative genomic approach.

USP15 USP34 USP4

1.82e-058122312838346
Pubmed

HAPSTR1 localizes HUWE1 to the nucleus to limit stress signaling pathways.

RAE1 USP15 USP34 USP4 AGPS

2.45e-0557122537167062
Pubmed

Deubiquitinating enzymes: a new class of biological regulators.

USP15 USP4

3.99e-05152229827704
Pubmed

Ubiquitin Specific Peptidase 15 (USP15) suppresses glioblastoma cell growth via stabilization of HECTD1 E3 ligase attenuating WNT pathway activity.

USP15 USP4

5.16e-051722229299163
Pubmed

Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins.

RAE1 MAPRE2 XRN2 ERI3 LARP1B

7.52e-0572322534133714
Pubmed

Usp12 stabilizes the T-cell receptor complex at the cell surface during signaling.

USP34 USP4

8.76e-052222226811477
Pubmed

USP10 regulates B cell response to SARS-CoV-2 or HIV-1 nanoparticle vaccines through deubiquitinating AID.

USP15 MSH6

1.05e-042422234983926
Pubmed

Genome-wide association study of lung function decline in adults with and without asthma.

USP15 MUSK

1.87e-043222222424883
Pubmed

Ubiquitin-specific peptidase 2a (USP2a) deubiquitinates and stabilizes β-catenin.

USP15 USP4

1.99e-043322230323974
Pubmed

An Interaction Landscape of Ubiquitin Signaling.

USP15 MAPRE2 SCPEP1 USP4

2.17e-0448122428190767
Pubmed

USP15 Deubiquitinase Safeguards Hematopoiesis and Genome Integrity in Hematopoietic Stem Cells and Leukemia Cells.

USP15 USP4

2.24e-043522233378683
Pubmed

A microarray of ubiquitylated proteins for profiling deubiquitylase activity reveals the critical roles of both chain and substrate.

USP15 USP4

2.38e-043622222626734
Pubmed

Host E3 ligase HUWE1 attenuates the proapoptotic activity of the MERS-CoV accessory protein ORF3 by promoting its ubiquitin-dependent degradation.

RAE1 MAPRE2 MSH6 AGPS

3.23e-0453422435032548
Pubmed

USP45 and Spindly are part of the same complex implicated in cell migration.

USP34 MSH6 USP4

4.27e-0423522330258100
GeneFamilyUbiquitin specific peptidases

USP15 USP34 USP4

2.22e-0556183366
CoexpressionRODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP

RAE1 USP15 USP34 MSH6 XRN2 AGPS

2.17e-05721226M10237
ToppCell3'-Adult-LargeIntestine-Hematopoietic-Myeloid-Macrophages|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract

MRC1 SCPEP1 SIGLEC7

1.06e-04189223b491204cf38dc80a2583e3082a82dda8d77b3fc4
ToppCellsevere-Myeloid-Immature_Neutrophils_1|severe / Cohort 2 (Rhapsody WB + PBMC) with disease condition, lineage and cell classs

RAE1 SCPEP1 AGPS

1.16e-04195223becad890a420267ca41e98e61a8da343b51e1945
ToppCellsevere-Myeloid-Immature_Neutrophils_1|Myeloid / Cohort 2 (Rhapsody WB + PBMC) with disease condition, lineage and cell classs

RAE1 SCPEP1 AGPS

1.20e-041972239599319dd1f80c81356a8624131566cc76d77d7e
ToppCellNS-critical-LOC-Myeloid-Macrophage|LOC / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

MRC1 AGPS SIGLEC7

1.20e-041972235fb0696376a5501b7c87e0f2f5e4fff3da2903f2
ToppCellTCGA-Skin-Metastatic-Melanoma-Skin_Cutaneous_Melanoma|TCGA-Skin / Sample_Type by Project: Shred V9

USP34 MSH6 SIGLEC7

1.22e-0419822362cbf4b29e8af4983fb47a17f96da62682a5137e
ToppCellTCGA-Skin-Metastatic-Melanoma|TCGA-Skin / Sample_Type by Project: Shred V9

USP34 MSH6 SIGLEC7

1.22e-04198223af4fb9eb2295c7b90624b38ba25619aa15254efa
ToppCellTCGA-Skin-Metastatic|TCGA-Skin / Sample_Type by Project: Shred V9

USP34 MSH6 SIGLEC7

1.22e-04198223ad39cce004867f083f8da1954e0cf5a263815184
ToppCellBAL-Mild-Myeloid-TRAM-TRAM3|Mild / Location, Disease Group, Cell group, Cell class (2021.03.09)

MRC1 SCPEP1 SIGLEC7

1.23e-04199223bae7aa25f9e23fea19371390b8306e9dc3e4d549
ToppCellBAL-Mild-Myeloid-TRAM-TRAM3|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

MRC1 SCPEP1 SIGLEC7

1.23e-041992234e518651ff219e163cfd9deb58566df6308aa3f7
ToppCellMild_COVID-19-Myeloid-TRAM3|Mild_COVID-19 / Disease group,lineage and cell class (2021.01.30)

MRC1 SCPEP1 SIGLEC7

1.23e-041992234ab5da8ab757e8294c743949a5374b6e6a388913
ToppCellBAL-Mild-Myeloid-TRAM-TRAM3-|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

MRC1 SCPEP1 SIGLEC7

1.23e-04199223af167e7a16c3537ce0aa821f608cdcb0c3abc07f
ToppCellBAL-Mild-Myeloid-TRAM-TRAM3-|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)

MRC1 SCPEP1 SIGLEC7

1.23e-041992234b88ce864dc75ed8596a076ce4498f73639bbac8
ToppCellBAL-Mild-Myeloid-TRAM|Mild / Location, Disease Group, Cell group, Cell class (2021.03.09)

MRC1 SCPEP1 SIGLEC7

1.23e-041992238a31a459491aa8625802c5211d38d57c1e8be76b
ToppCellBAL-Mild-Myeloid-TRAM|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

MRC1 SCPEP1 SIGLEC7

1.23e-0419922327c63da6b29a1fc57ed2568443ba5029f3cdb186
ToppCellmLN-Macrophage-LYVE1_Macrophage|Macrophage / Region, Cell class and subclass

USP15 MRC1 SCPEP1

1.25e-04200223e3c15e0e1c2602b0cc9ab8cc50c978d265350c94
Diseaselow density lipoprotein cholesterol measurement, physical activity

MAPRE2 MUSK

1.11e-0366222EFO_0003940, EFO_0004611
Diseaseserum alanine aminotransferase measurement, response to combination chemotherapy

CSMD2 AGPS

1.28e-0371222EFO_0004735, EFO_0007965
Diseaseresponse to selective serotonin reuptake inhibitor

CSMD2 SERPINB8

1.70e-0382222EFO_0005658
Diseaseliver fibrosis measurement

MRC1 MUSK

1.87e-0386222EFO_0010576
Diseaseplatelet component distribution width

USP15 ALG12 MUSK SLFN14

2.15e-03755224EFO_0007984
Diseaselow density lipoprotein cholesterol measurement, alcohol consumption measurement

MAPRE2 MUSK

2.46e-0399222EFO_0004611, EFO_0007878
Diseaselow density lipoprotein cholesterol measurement, alcohol drinking

MAPRE2 MUSK

2.61e-03102222EFO_0004329, EFO_0004611
Diseaseobsolete_red blood cell distribution width

MAPRE2 USP4 MUSK XRN2 SLFN14

2.70e-031347225EFO_0005192

Protein segments in the cluster

PeptideGeneStartEntry
ADYFKQWINLKKAYS

ERI3

266

O43414
NSLWKGAYEYQGKKQ

CSMD2

3276

Q7Z408
TKWFGQRNKYFKTYN

CMTR2

431

Q8IYT2
LLNNYKKSWLYKAGS

ALG12

331

Q9BV10
YDWSKGHEFYNPQKK

RAE1

336

P78406
LKNAENEAYFKSWYQ

PIK3C2G

796

O75747
NEAYFKSWYQKLLAA

PIK3C2G

801

O75747
DKNNKLYLSYFNWRK

FUT9

306

Q9Y231
QKLKWYFKLYDADGN

GUCA1C

91

O95843
LFYNFDKNYKDWQSA

MSH6

1036

P52701
IQWFKKFYDANYDGK

MAPRE2

151

Q15555
GLEKFWAYLKYSQSK

LARP1B

811

Q659C4
KEGWNFYSNKCFKIF

MRC1

946

P22897
NFCSKYGNWYMKAKN

SLFN14

666

P0C7P3
KSYKNLAFYWILKAG

SCPEP1

416

Q9HB40
EKGNIKWNYKYDQLS

SIGLEC7

126

Q9Y286
YFKGKWNEQFDRKYT

SERPINB8

166

P50452
WGYNDSKFIFNKKGQ

AGPS

96

O00116
HYTAYAKNKLNGKWY

USP4

881

Q13107
AKNKLNGKWYYFDDS

USP4

886

Q13107
WKQRYYKNKFDVDAA

XRN2

516

Q9H0D6
HYTAFAKNKDDGKWY

USP15

891

Q9Y4E8
AKNKDDGKWYYFDDS

USP15

896

Q9Y4E8
HAYKNNKWYLFNDAE

USP34

2176

Q70CQ2
WSKPQKDNKGYCAQY

MUSK

306

O15146