Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyBiologicalProcessRNA secondary structure unwinding

AGO2 DDX39B DHX9

7.07e-069923GO:0010501
GeneOntologyCellularComponentcentrosome

RABL6 ABRAXAS2 ACTR1A AHI1 PLEKHG6 RAP1GAP2 MAP3K11 FLCN BRSK1 CSPP1 PLK4 DYNC1H1 DHX9 PCNT

8.54e-067709414GO:0005813
GeneOntologyCellularComponentTRAPPIII protein complex

TRAPPC12 TRAPPC2B TRAPPC2

1.88e-0512943GO:1990072
GeneOntologyCellularComponentTRAPP complex

TRAPPC12 TRAPPC2B TRAPPC2

5.72e-0517943GO:0030008
GeneOntologyCellularComponentmicrotubule organizing center

RABL6 ABRAXAS2 ACTR1A AHI1 PLEKHG6 RAP1GAP2 MAP3K11 FLCN BRSK1 CSPP1 PLK4 DYNC1H1 DHX9 PCNT

6.01e-059199414GO:0005815
GeneOntologyCellularComponentaxon

TANC2 LRIG2 ATP6AP2 AVIL HCN3 LRP2 SYNPO LRRC7 BRSK1 KCNIP3 DYNC1H1 PNOC CD200

1.73e-048919413GO:0030424
GeneOntologyCellularComponentmanchette

ACTR1A SPEF2 DYNC1H1

2.66e-0428943GO:0002177
GeneOntologyCellularComponentdendrite

SHANK1 SHISA9 TANC2 AGO2 ATP6AP2 HCN3 LRP2 SYNPO LRRC7 ARHGEF2 KCNIP3 PNOC

4.59e-048589412GO:0030425
GeneOntologyCellularComponentdendritic tree

SHANK1 SHISA9 TANC2 AGO2 ATP6AP2 HCN3 LRP2 SYNPO LRRC7 ARHGEF2 KCNIP3 PNOC

4.68e-048609412GO:0097447
GeneOntologyCellularComponentendoribonuclease complex

AGO2 POP1 DHX9

6.12e-0437943GO:1902555
GeneOntologyCellularComponentnuclear outer membrane

GUCY2D TRAPPC2B TRAPPC2

7.71e-0440943GO:0005640
GeneOntologyCellularComponentdendritic spine

SHANK1 SHISA9 TANC2 ATP6AP2 SYNPO LRRC7

7.88e-04242946GO:0043197
GeneOntologyCellularComponentneuron spine

SHANK1 SHISA9 TANC2 ATP6AP2 SYNPO LRRC7

8.76e-04247946GO:0044309
GeneOntologyCellularComponentRISC-loading complex

AGO2 DHX9

8.79e-0410942GO:0070578
GeneOntologyCellularComponentendonuclease complex

AGO2 POP1 DHX9

9.54e-0443943GO:1905348
GeneOntologyCellularComponentsomatodendritic compartment

SHANK1 SHISA9 TANC2 AGO2 ATP6AP2 HCN3 LRP2 SYNPO LRRC7 ARHGEF2 KCNIP3 DYNC1H1 PNOC CD200

1.15e-0312289414GO:0036477
GeneOntologyCellularComponentTRAPPII protein complex

TRAPPC2B TRAPPC2

1.28e-0312942GO:1990071
GeneOntologyCellularComponentMKS complex

AHI1 CC2D2A

1.76e-0314942GO:0036038
Domain2Fe2S_fd_BS

AOX1 NDUFS1

2.53e-045952IPR006058
Domain2FE2S_FER_1

AOX1 NDUFS1

2.53e-045952PS00197
DomainFer2

AOX1 NDUFS1

3.79e-046952PF00111
Domain2FE2S_FER_2

AOX1 NDUFS1

3.79e-046952PS51085
Domain2Fe-2S_ferredoxin-type

AOX1 NDUFS1

3.79e-046952IPR001041
DomainLRRCT

LRIG2 LRIG3 LRIG1

5.68e-0432953PF01463
DomainFAD-dep_OxRdtase

PDPR KMO

1.63e-0312952IPR006076
DomainDAO

PDPR KMO

1.63e-0312952PF01266
DomainLRR_8

LRIG2 LRIG3 LRCH2 LRIG1 LRRC7

1.81e-03171955PF13855
DomainLeu-rich_rpt_typical-subtyp

LRIG2 LRIG3 LRCH2 LRIG1 LRRC7

2.10e-03177955IPR003591
DomainLRR_TYP

LRIG2 LRIG3 LRCH2 LRIG1 LRRC7

2.10e-03177955SM00369
DomainBeta-grasp_dom

AOX1 NDUFS1

2.24e-0314952IPR012675
Domain-

AOX1 NDUFS1

2.24e-03149523.10.20.30
DomainCysPc

ADGB CAPN14

2.57e-0315952SM00230
DomainPeptidase_C2_calpain_cat

ADGB CAPN14

2.57e-0315952IPR001300
DomainPeptidase_C2

ADGB CAPN14

2.57e-0315952PF00648
DomainCALPAIN_CAT

ADGB CAPN14

2.57e-0315952PS50203
DomainLeu-rich_rpt

LRIG2 LRIG3 LRCH2 LRIG1 CARMIL1 LRRC7

2.61e-03271956IPR001611
DomainLRR

LRIG2 LRIG3 LRCH2 LRIG1 LRRC7

3.64e-03201955PS51450
DomainPkinase_Tyr

KSR1 GUCY2D MAP3K11 PLK4

4.26e-03129954PF07714
DomainLRR_1

LRIG2 LRIG3 LRCH2 LRIG1 LRRC7

5.22e-03219955PF00560
DomainSer-Thr/Tyr_kinase_cat_dom

KSR1 GUCY2D MAP3K11 PLK4

5.41e-03138954IPR001245
Domain-

LRIG2 LRIG3 LRCH2 LRIG1 CARMIL1 LRRC7

5.95e-033219563.80.10.10
PathwayREACTOME_ANCHORING_OF_THE_BASAL_BODY_TO_THE_PLASMA_MEMBRANE

ACTR1A AHI1 CC2D2A PLK4 DYNC1H1 PCNT

1.15e-0597746M27478
Pubmed

Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders.

SHANK1 TANC2 LRIG2 ACTR1A BCL11B AGO2 LRCH2 DOCK11 HCN3 SYNPO LRRC7 ARHGEF2 CCDC6 BRSK1 DYNC1H1 PCNT

8.81e-09963961628671696
Pubmed

A dual-activity topoisomerase complex regulates mRNA translation and turnover.

TANC2 RABL6 ACTR1A TPST2 THADA ACACA TRAPPC12 MTMR8 RAP1GAP2 MAP3K11 FLCN PPARA ATG2A MLXIP ARHGEF2 DYNC1H1 PCNT

8.91e-091105961735748872
Pubmed

Redistribution of LRIG proteins in psoriasis.

LRIG2 LRIG3 LRIG1

2.04e-08396318037903
Pubmed

LRIGs: A Prognostically Significant Family with Emerging Therapeutic Competence against Cancers.

LRIG2 LRIG3 LRIG1

2.04e-08396327628597
Pubmed

LRIG proteins regulate lipid metabolism via BMP signaling and affect the risk of type 2 diabetes.

LRIG2 LRIG3 LRIG1

2.04e-08396333469151
Pubmed

KCTD13-mediated ubiquitination and degradation of GluN1 regulates excitatory synaptic transmission and seizure susceptibility.

SHANK1 TANC2 ACTR1A AGO2 LRCH2 CLCN6 LRIG1 CARMIL1 SYNPO LRRC7 MCAT ARHGEF2 BRSK1 DDX39B NDUFS1 DYNC1H1 DHX9

3.62e-071431961737142655
Pubmed

Reciprocal interaction between SIRT6 and APC/C regulates genomic stability.

LRCH2 ACACA DOCK11 USP11 POP1 ARHGEF2 CCDC6 MED27 DDX39B DHX9

4.06e-07440961034244565
Pubmed

Lrig2 Negatively Regulates Ectodomain Shedding of Axon Guidance Receptors by ADAM Proteases.

LRIG2 LRIG3 LRIG1

1.13e-06896326651291
Pubmed

In vivo analysis of Lrig genes reveals redundant and independent functions in the inner ear.

LRIG2 LRIG3 LRIG1

1.13e-06896324086156
Pubmed

C5orf51 is a component of the MON1-CCZ1 complex and controls RAB7A localization and stability during mitophagy.

LRIG2 LRIG3 LRIG1 TRAPPC12 ATP6AP2 TRABD LRP2 FLCN ATG2A TRAPPC2

1.38e-06504961034432599
Pubmed

Identification of 14-3-3epsilon substrates from embryonic murine brain.

TANC2 ACTR1A KSR1 AHI1 LRCH2 BRSK1

1.87e-0613296616944949
Pubmed

Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods.

ACTR1A RAP1GAP2 CSPP1 PLK4 DYNC1H1 PCNT

3.35e-0614696621399614
Pubmed

The human cytoplasmic dynein interactome reveals novel activators of motility.

ACTR1A AGO2 LRCH2 ACACA CARMIL1 LRP2 ATG2A MLXIP ARHGEF2 FHIP2A DYNC1H1 PCNT

4.16e-06853961228718761
Pubmed

The LRIG gene family has three vertebrate paralogs widely expressed in human and mouse tissues and a homolog in Ascidiacea.

LRIG2 LRIG3

7.54e-06296215203213
Pubmed

Correlation between LRIG1 and LRIG2 expressions and expression of 11 tumor markers, with special reference to tumor suppressors, in CIN and normal cervical epithelium.

LRIG2 LRIG1

7.54e-06296221632100
Pubmed

Down-regulation of leucine-rich repeats and immunoglobulin-like domain proteins (LRIG1-3) in HP75 pituitary adenoma cell line.

LRIG2 LRIG3

7.54e-06296217393120
Pubmed

Expression of LRIG1 and LRIG3 correlates with human papillomavirus status and patient survival in cervical adenocarcinoma.

LRIG3 LRIG1

7.54e-06296223165628
Pubmed

Human wild-type SEDL protein functionally complements yeast Trs20p but some naturally occurring SEDL mutants do not.

TRAPPC2B TRAPPC2

7.54e-06296214597397
Pubmed

Identification of the gene (SEDL) causing X-linked spondyloepiphyseal dysplasia tarda.

TRAPPC2B TRAPPC2

7.54e-06296210431248
Pubmed

Immunohistochemical analysis of LRIG proteins in meningiomas: correlation between estrogen receptor status and LRIG expression.

LRIG2 LRIG1

7.54e-06296222484910
Pubmed

Prognostic significance of LRIG2 and LRIG3 proteins in urothelial bladder carcinoma.

LRIG2 LRIG3

7.54e-06296234839782
Pubmed

Spondyloepiphyseal dysplasia tarda (SEDL, MIM #313400).

TRAPPC2B TRAPPC2

7.54e-06296212939648
Pubmed

Transcriptome analysis of mouse stem cells and early embryos.

ACACA LRIG1 DOCK11 POP1 DDX39B NDUFS1 CD200 DHX9

7.78e-0636396814691545
Pubmed

TRAPP Complexes in Secretion and Autophagy.

TRAPPC12 TRAPPC2B TRAPPC2

9.05e-061596327066478
Pubmed

New interaction partners for Nek4.1 and Nek4.2 isoforms: from the DNA damage response to RNA splicing.

SHANK1 ACTR1A BCL11B ATP6AP2 U2SURP SYNPO SF3A2 NDUFS1 DHX9

1.28e-0551396925798074
Pubmed

Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries.

LRIG3 LRCH2 RAP1GAP2 LRRC7 MLXIP FHIP2A DYNC1H1 PCNT

1.77e-0540796812693553
Pubmed

The centrosomal protein C-Nap1 is required for cell cycle-regulated centrosome cohesion.

ACTR1A PLK4 DYNC1H1 PCNT

1.79e-055696411076968
Pubmed

The PITSLRE/CDK11p58 protein kinase promotes centrosome maturation and bipolar spindle formation.

ACTR1A PLK4 DYNC1H1 PCNT

1.92e-055796416462731
Pubmed

Polo-like kinase 1 regulates Nlp, a centrosome protein involved in microtubule nucleation.

ACTR1A PLK4 DYNC1H1 PCNT

2.06e-055896412852856
Pubmed

Pro-prion, as a membrane adaptor protein for E3 ligase c-Cbl, facilitates the ubiquitination of IGF-1R, promoting melanoma metastasis.

ACTR1A KSR1 THADA LRCH2 WDHD1 USP42 TRAPPC12 HCN3 SYNPO NDUFS1

2.13e-05689961036543142
Pubmed

ACACA reduces lipid accumulation through dual regulation of lipid metabolism and mitochondrial function via AMPK- PPARα- CPT1A axis.

ACACA PPARA

2.26e-05396238395901
Pubmed

Centrosome/spindle pole-associated protein regulates cytokinesis via promoting the recruitment of MyoGEF to the central spindle.

PLEKHG6 CSPP1

2.26e-05396219129481
Pubmed

ADGB variants cause asthenozoospermia and male infertility.

ADGB SPEF2

2.26e-05396236995441
Pubmed

Hepatic Ago2 Regulates PPARα for Oxidative Metabolism Linked to Glycemic Control in Obesity and Post Bariatric Surgery.

AGO2 PPARA

2.26e-05396233567453
Pubmed

Megalin/LRP2 expression is induced by peroxisome proliferator-activated receptor -alpha and -gamma: implications for PPARs' roles in renal function.

LRP2 PPARA

2.26e-05396221311715
Pubmed

TRAMM/TrappC12 plays a role in chromosome congression, kinetochore stability, and CENP-E recruitment.

TRAPPC12 TRAPPC2

2.26e-05396225918224
Pubmed

Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9).

AGO2 DHX9

2.26e-05396223361462
Pubmed

Cell cycle regulation of the activity and subcellular localization of Plk1, a human protein kinase implicated in mitotic spindle function.

ACTR1A PLK4 DYNC1H1 PCNT

2.52e-05619647790358
Pubmed

A central chaperone-like role for 14-3-3 proteins in human cells.

TANC2 KSR1 ACACA DOCK11 CARMIL1 MLXIP ARHGEF2 CCDC6 CSPP1 PLK4 DOP1A

2.61e-05861961136931259
Pubmed

Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions.

TANC2 ABRAXAS2 KSR1 LRCH2 DOCK11 ARHGEF2 CCDC6 CSPP1

3.40e-0544696824255178
Pubmed

Centrosomal proteins CG-NAP and kendrin provide microtubule nucleation sites by anchoring gamma-tubulin ring complex.

ACTR1A PLK4 DYNC1H1 PCNT

3.45e-056696412221128
Pubmed

Direct interaction between hnRNP-M and CDC5L/PLRG1 proteins affects alternative splice site choice.

TANC2 ACTR1A U2SURP ARHGEF2 SF3A2 DDX39B DYNC1H1 DHX9 PCNT

3.45e-0558296920467437
Pubmed

Identifying leukocyte gene expression patterns associated with plasma lipid levels in human subjects.

ACACA NFE2L1 MCAT PPARA

3.66e-056796416806233
Pubmed

In-Depth In Vivo Crosslinking in Minutes by a Compact, Membrane-Permeable, and Alkynyl-Enrichable Crosslinker.

SPEF2 AVIL U2SURP CC2D2A SYNPO PPARA ARHGEF2 EPX SF3A2 DDX39B NDUFS1 DOP1A PCNT TRAPPC2

4.15e-051442961435575683
Pubmed

A novel 16-kilodalton cellular protein physically interacts with and antagonizes the functional activity of c-myc promoter-binding protein 1.

TRAPPC2B TRAPPC2

4.51e-05496211134351
Pubmed

The RhoGEF GEF-H1 is required for oncogenic RAS signaling via KSR-1.

KSR1 ARHGEF2

4.51e-05496224525234
Pubmed

CRM1 mediates nuclear-cytoplasmic shuttling of mature microRNAs.

AGO2 DHX9

4.51e-05496219955415
Pubmed

Disturbances in the normal regulation of SREBP-sensitive genes in PPAR alpha-deficient mice.

ACACA PPARA

4.51e-05496211254743
Pubmed

Isolation of a novel family of C(2)H(2) zinc finger proteins implicated in transcriptional repression mediated by chicken ovalbumin upstream promoter transcription factor (COUP-TF) orphan nuclear receptors.

BCL11B NR2F1

4.51e-05496210744719
Pubmed

Histone methylation mediated by NSD1 is required for the establishment and maintenance of neuronal identities.

BCL11B NRAP NR2F1

5.68e-052796337995181
Pubmed

An organelle-specific protein landscape identifies novel diseases and molecular mechanisms.

TANC2 ACTR1A KSR1 NAT14 THADA AHI1 LRCH2 CARMIL1 CSPP1 NDUFS1 DYNC1H1 PGM3 DHX9

6.98e-051321961327173435
Pubmed

The insulin receptor substrate of 53 kDa (IRSp53) limits hippocampal synaptic plasticity.

SHANK1 SYNPO LRRC7

7.07e-052996319208628
Pubmed

RNA helicase A interacts with RISC in human cells and functions in RISC loading.

AGO2 DHX9

7.50e-05596217531811
Pubmed

Leucine-rich repeat and immunoglobulin domain-containing protein-1 (Lrig1) negative regulatory action toward ErbB receptor tyrosine kinases is opposed by leucine-rich repeat and immunoglobulin domain-containing protein 3 (Lrig3).

LRIG3 LRIG1

7.50e-05596223723069
Pubmed

A role for Sp and nuclear receptor transcription factors in a cardiac hypertrophic growth program.

PPARA NR2F1

7.50e-0559629177236
Pubmed

Nuclear actin interactome analysis links actin to KAT14 histone acetyl transferase and mRNA splicing.

ACTR1A LRCH2 WDHD1 U2SURP POP1 SF3A2 DDX39B DYNC1H1

8.22e-0550696830890647
Pubmed

Acetylation of ELF5 suppresses breast cancer progression by promoting its degradation and targeting CCND1.

RABL6 ACACA WDHD1 U2SURP POP1 MCAT CCDC6 SF3A2 DHX9

8.33e-0565396933742100
Pubmed

Single-cell transcriptomic analysis reveals diversity within mammalian spinal motor neurons.

BCL11B NR2F1 PNOC

9.54e-053296336596814
Pubmed

saRNA-guided Ago2 targets the RITA complex to promoters to stimulate transcription.

AGO2 DHX9

1.12e-04696226902284
Pubmed

Degradation of Cep68 and PCNT cleavage mediate Cep215 removal from the PCM to allow centriole separation, disengagement and licensing.

PLK4 PCNT

1.12e-04696225503564
Pubmed

The mammalian SPD-2 ortholog Cep192 regulates centrosome biogenesis.

PLK4 PCNT

1.12e-04696218207742
Pubmed

Mammalian Golgi-associated Bicaudal-D2 functions in the dynein-dynactin pathway by interacting with these complexes.

ACTR1A DYNC1H1

1.12e-04696211483508
Pubmed

Expression pattern of LRR and Ig domain-containing protein (LRRIG protein) in the early mouse embryo.

LRIG2 LRIG3 LRIG1

1.15e-043496318848646
Pubmed

Joubert Syndrome

AHI1 CC2D2A CSPP1

1.15e-043496320301500
Pubmed

Mapping the MOB proteins' proximity network reveals a unique interaction between human MOB3C and the RNase P complex.

ACTR1A ACACA WDHD1 DOCK11 POP1 CCDC6 DYNC1H1

1.23e-0439996737536630
Pubmed

KAP1 Recruitment of the 7SK snRNP Complex to Promoters Enables Transcription Elongation by RNA Polymerase II.

ACTR1A ACACA POP1 SF3A2 DYNC1H1 DHX9

1.33e-0428196626725010
Pubmed

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning.

TANC2 RABL6 ABRAXAS2 KSR1 WDHD1 PDE8B RAP1GAP2 ATG2A MLXIP CCDC6 FHIP2A

1.39e-041038961126673895
Pubmed

Regulation of epidermal differentiation through KDF1-mediated deubiquitination of IKKα.

ACACA U2SURP POP1 NDUFS1 DHX9

1.54e-0418296532239614
Pubmed

Homozygous ARHGEF2 mutation causes intellectual disability and midbrain-hindbrain malformation.

BCL11B ARHGEF2

1.57e-04796228453519
Pubmed

CoupTFI interacts with retinoic acid signaling during cortical development.

BCL11B NR2F1

1.57e-04796223472160
Pubmed

Vertebrate Lrig3-ErbB interactions occur in vitro but are unlikely to play a role in Lrig3-dependent inner ear morphogenesis.

LRIG3 LRIG1

1.57e-04796220126551
Pubmed

Functional organization of the yeast proteome by systematic analysis of protein complexes.

TRAPPC2B TRAPPC2

1.57e-04796211805826
Pubmed

A comprehensive study of the association between the EGFR and ERBB2 genes and glioma risk.

LRIG2 LRIG3

1.57e-04796220446891
Pubmed

A focused and efficient genetic screening strategy in the mouse: identification of mutations that disrupt cortical development.

LRP2 PCNT

1.57e-04796215314648
Pubmed

The deubiquitinating enzyme complex BRISC is required for proper mitotic spindle assembly in mammalian cells.

ABRAXAS2 DYNC1H1

1.57e-04796226195665
Pubmed

Chromatin Remodeling BAF155 Subunit Regulates the Genesis of Basal Progenitors in Developing Cortex.

LRIG3 BCL11B CDH4

1.60e-043896330240734
Pubmed

Genetic and Proteomic Interrogation of Lower Confidence Candidate Genes Reveals Signaling Networks in β-Catenin-Active Cancers.

ACTR1A AGO2 ACACA U2SURP POP1 ARHGEF2 MED27 SF3A2 DDX39B NDUFS1 DYNC1H1 DHX9

1.67e-041247961227684187
Pubmed

Proximity interactions among centrosome components identify regulators of centriole duplication.

USP42 CSPP1 PLK4 PCNT

1.81e-0410196424613305
Pubmed

Gene structure and expression study of the SEDL gene for spondyloepiphyseal dysplasia tarda.

TRAPPC2B TRAPPC2

2.09e-04896211031107
Pubmed

Multiplexed kinase interactome profiling quantifies cellular network activity and plasticity.

KLHL6 ACTR1A KSR1 AGO2 MAP3K11 FLCN ARHGEF2 CCDC6 BRSK1 PLK4

2.12e-04910961036736316
Pubmed

Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions.

TANC2 ABRAXAS2 LRCH2 PLEKHG6 DOCK11 PPP2R3B MCAT ARHGEF2 CCDC6 SF3A2

2.24e-04916961032203420
Pubmed

Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing.

SHISA9 THADA AGO2 ACACA DHRS3 CARMIL1 SYNPO LRRC7 PPARA KCNIP3 MED27 DOP1A PCNT

2.28e-041489961328611215
Pubmed

CRL4AMBRA1 targets Elongin C for ubiquitination and degradation to modulate CRL5 signaling.

DCAF10 USP11 NDUFS1 PGM3

2.34e-0410896430166453
Pubmed

Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.

TANC2 LRIG3 KSR1 THADA BCL11B AGO2 USP11 TRABD CECR2 AOX1 LRP2

2.59e-041116961131753913
Pubmed

Cross-repressive interactions between Lrig3 and netrin 1 shape the architecture of the inner ear.

LRIG3 LRIG1

2.68e-04996219004851
Pubmed

Fibroblast Growth Factor 21 Mediates Glycemic Regulation by Hepatic JNK.

MAP3K11 PPARA

2.68e-04996226947074
Pubmed

Inhibition of Poly(ADP-Ribose) Polymerase-1 Protects Chronic Alcoholic Liver Injury.

ACACA PPARA

2.68e-04996227746183
Pubmed

BAP1 regulation of the key adaptor protein NCoR1 is critical for γ-globin gene repression.

RABL6 ACACA ZCCHC10 USP42 U2SURP POP1 ARHGEF2 SF3A2 DDX39B NDUFS1 DYNC1H1 DHX9

2.77e-041318961230463901
Pubmed

LMBR1L regulates lymphopoiesis through Wnt/β-catenin signaling.

NAT14 THADA LRIG1 ATP6AP2 TRABD FAM20B ARHGEF2 NR2F1 DYNC1H1 PGM3

2.79e-04942961031073040
Pubmed

SDCCAG8 regulates pericentriolar material recruitment and neuronal migration in the developing cortex.

BCL11B PCNT

3.34e-041096225088364
Pubmed

Area-specific development of distinct projection neuron subclasses is regulated by postnatal epigenetic modifications.

BCL11B NR2F1

3.34e-041096226814051
Pubmed

Histopathology reveals correlative and unique phenotypes in a high-throughput mouse phenotyping screen.

LRIG1 USP42 CARMIL1

3.42e-044996324652767
Pubmed

Macrophages transfer mitochondria to sensory neurons to resolve inflammatory pain.

AVIL CD200

4.08e-041196234921782
Pubmed

Lrig1 and Lrig3 cooperate to control Ret receptor signaling, sensory axonal growth and epidermal innervation.

LRIG3 LRIG1

4.08e-041196234338291
Pubmed

Tight junction protein occludin regulates progenitor Self-Renewal and survival in developing cortex.

BCL11B PCNT

4.08e-041196231794381
Pubmed

Loci at chromosomes 13, 19 and 20 influence age at natural menopause.

BRSK1 DYNC1H1

4.08e-041196219448619
Pubmed

Prediction of the coding sequences of unidentified human genes. VIII. 78 new cDNA clones from brain which code for large proteins in vitro.

FAM20B ATG2A PCNT

4.08e-04529639455477
Pubmed

Two Pairs of ON and OFF Retinal Ganglion Cells Are Defined by Intersectional Patterns of Transcription Factor Expression.

BCL11B KCNIP3 CDH4

4.32e-045396327210758
Pubmed

Prediction of the coding sequences of mouse homologues of KIAA gene: IV. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries.

TANC2 LRIG2 ABRAXAS2 ZBTB34 THADA POP1 DOP1A

4.44e-0449396715368895
Pubmed

Defining the human deubiquitinating enzyme interaction landscape.

ABRAXAS2 USP42 USP11 ATP6AP2 ATG2A ARHGEF2 CCDC6 SF3A2 NDUFS1 TRAPPC2

4.64e-041005961019615732
InteractionTOP3B interactions

TANC2 RABL6 ACTR1A TPST2 THADA AGO2 ACACA TRAPPC12 ATP6AP2 MTMR8 RAP1GAP2 MAP3K11 FLCN PPARA ATG2A MLXIP ARHGEF2 DDX39B DYNC1H1 DHX9 PCNT

3.76e-0614709521int:TOP3B
Cytoband1q25

FAM20B DHX9

1.36e-03269621q25
Cytoband12q14.1

LRIG3 AVIL

1.58e-032896212q14.1
GeneFamilyTrafficking protein particle complex

TRAPPC12 TRAPPC2

1.20e-0314672772
GeneFamilyC2 domain containing|Calpains

ADGB CAPN14

1.38e-0315672975
CoexpressionAtlasdev gonad_e12.5_M_SertoliCell_Sox9_k-means-cluster#1_top-relative-expression-ranked_1000

PDPR ACACA CARMIL1 CSPP1 SF3A2 PGM3

1.24e-05114956gudmap_dev gonad_e12.5_M_SertoliCell_Sox9_k1_1000
ToppCellfrontal_cortex-Neuronal-GABAergic_neuron-Lamp5-Lamp5_Fam19a1_Pax6|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SHISA9 DOCK11 TMEM132E CDH4 PNOC

6.51e-061219657f2057367777c6c92f596054cbc5fe567d079fbc
ToppCellfacs-Brain_Non-Myeloid-Striatum-24m-Macroglial-astrocyte|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

AGO2 LRCH2 NFE2L1 POP1 PPARA

7.05e-06123965a45d6907c041ad3f3218cd46dccfc25d4bd961cb
ToppCellrenal_medulla_nuclei-Adult_normal_reference-Epithelial-Intermediate_tubule_epithelial_cell-kidney_loop_of_Henle_thin_descending_limb_epithelial_cell-Descending_Thin_Limb_Cell_Type_3|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

SHISA9 LRIG3 DOCK11 PNOC CD200

3.36e-051709655d5f208682be21ed58320f5fc083a7898f8712da
ToppCelldroplet-Liver-LIVER-NPC-1m-Lymphocytic-macrophage/monocyte|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

AHI1 BCL11B DOCK11 CD200 PCNT

3.36e-051709653ad9f950b87ee98f025ab9b4a8ed551e6a9b4764
ToppCelldroplet-Lung-30m-Hematologic-myeloid-myeloid_dendritic_cell-proliferating_dendritic|30m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

SLAMF8 CLCN6 CARMIL1 KCNIP3 KMO

3.55e-05172965b043d4f81dced7fb3326043f68474123be47cc5d
ToppCellfacs-Lung-nan-3m-Lymphocytic-CD8-positive,_alpha-beta_T_cell|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

BCL11B PLEKHG6 LRIG1 ZCCHC10 ATG2A

3.76e-051749651c073177c1753e3b91ef8fd9e95230a1d13c82f3
ToppCellfacs-Lung-nan-3m-Lymphocytic-CD8+_T|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

BCL11B PLEKHG6 LRIG1 ZCCHC10 ATG2A

3.76e-051749655491ad5c144baf2ef9b1c58eb720c872d14feb15
ToppCellFetal_brain-organoid_Tanaka_cellReport-GW19-Neuronal-Neuron|GW19 / Sample Type, Dataset, Time_group, and Cell type.

LRIG2 DOCK11 PDE8B ATG2A FHIP2A

3.86e-051759652812ac2ef41d245db544697fb6da1883361c96e8
ToppCellT_cells-Tph_and_Tfh|T_cells / Immune cells in Rheumatoid Arthritis Joint Synovial Tissues

NAT14 THADA AHI1 AGO2 CD200

3.97e-0517696556c055488e34605d32562571a2fee621b47c9441
ToppCellPBMC-Mild-cDC_11|Mild / Compartment, Disease Groups and Clusters

SLAMF8 TANC2 CARMIL1 SERPINF2 CD200

4.07e-05177965974305e4c0eff90134c4e58cf11b955d1eee0501
ToppCellControl-Epithelial_cells-AT2|Control / group, cell type (main and fine annotations)

TANC2 ACACA CECR2 LRP2 ABCC9

4.41e-05180965198b19e7910b4a8cc7e820c525ab357c7f99f578
ToppCellLA-11._Adipocyte|LA / Chamber and Cluster_Paper

ACACA DHRS3 DOCK11 PDE8B PPARA

4.77e-051839653f9011976782fa8aa95cdd6f00f07a91094d411b
ToppCell3'_v3-GI_small-bowel-Myeloid_Dendritic-DC1|GI_small-bowel / Manually curated celltypes from each tissue

SLAMF8 NALCN TMEM132E CECR2 SERPINF2

4.90e-051849658e393eea7240584a3cef718bee094e2705ec1891
ToppCellCerebellum-Neuronal|Cerebellum / BrainAtlas - Mouse McCarroll V32

SHANK1 GPR61 NALCN HCN3 RAP1GAP2

5.29e-0518796561b9d6eb131a674598aa8409d7fa909c8765442d
ToppCellfacs-Trachea-24m-Mesenchymal-myofibroblast-tracheobronchial_smooth_muscle_cell-smooth_muscle_cell_of_trachea_l32-30|24m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

CUTC ACACA POP1 MCAT KCNIP3

5.43e-05188965c2febf9fd4632af1f922067c3a30e5c50f75f480
ToppCellFetal_brain-organoid_Tanaka_cellReport-GW09-Neuronal-Neuron|GW09 / Sample Type, Dataset, Time_group, and Cell type.

KSR1 CECR2 BRSK1 NR2F1 CD200

5.56e-051899653717d1148e26ac78a26aea0ca1dbfbb9d3668877
ToppCellBALF-PFMC-Severe-critical_progression_d12-22_with-steroid-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c03-ITGA4|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)

THADA BCL11B USP42 CCDC6 FHIP2A

5.70e-0519096591ba66d4b56c59523485b17738e93f14bb00afa4
ToppCell10x_3'_v2v3-Non-neoplastic-Lymphoid-CD4/CD8-CD4_rest-C|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group

BCL11B SPEF2 POP1 ATG2A CCDC6

5.70e-0519096569c5c4d5f4fb6e5ae2c9dbf9d209faf093c3f769
ToppCell10x5'v1-week_17-19-Endothelial-stroma-proliferating_EC|week_17-19 / cell types per 3 fetal stages;per 3',per 5'

LRIG3 LRCH2 SYNPO CDH4 NR2F1

5.85e-05191965dc9e5eb6aa31b8d79aeec33e59b9138dfb469a3b
ToppCellnucseq-Epithelial-Epithelial_Alveolar-AT2-AT2|nucseq / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2

TANC2 ACACA CECR2 LRP2 ABCC9

6.14e-05193965fd4d3c0d7caf8a2fff5b3d901fc28d19a8163cdf
ToppCellnucseq-Epithelial-Epithelial_Alveolar-AT2|nucseq / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2

TANC2 ACACA CECR2 LRP2 ABCC9

6.14e-05193965f3cc7cfdbc164a4ed42f87647111522b7d393bcb
ToppCellFetal_brain-organoid_Tanaka_cellReport-GW08-Neuronal-Cortical_neuron|GW08 / Sample Type, Dataset, Time_group, and Cell type.

USP11 ABCC9 CD200

6.39e-053696325fd4cf19f2ed94f99600c18383b17f86bb17ef5
ToppCellmoderate-Epithelial-Ciliated|Epithelial / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

KLHL6 ADGB SPEF2 CC2D2A CSPP1

6.45e-051959653486eae5fdb062a75a907b896c9d7b396d2aa195
ToppCellcontrol-Epithelial-Ciliated|Epithelial / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

KLHL6 ADGB SPEF2 CC2D2A CSPP1

6.77e-05197965e453d085182364ca347cbcc9dc995c62c3353016
ToppCellcontrol-Epithelial-Ciliated|control / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

KLHL6 ADGB SPEF2 CC2D2A CSPP1

6.77e-05197965d4e963c1f82996371bf3d63578ee9fce8e00c5a8
ToppCellBronchial-NucSeq-Epithelial-Epi_alveolar-AT2|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations

TANC2 ACACA CECR2 LRP2 ABCC9

6.93e-05198965f948391296c261c473d339069a6d0f20ccd6f38f
ToppCellParenchymal-NucSeq-Epithelial-Epi_alveolar-AT2|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations

TANC2 ACACA LRIG1 CECR2 LRP2

6.93e-051989652e2a4e1756bba6f4fbe529559a97d2993c890b4b
ToppCellLPS_IL1RA_TNF-Epithelial_alveolar-AT_2-Differentiating_AT2|LPS_IL1RA_TNF / Treatment groups by lineage, cell group, cell type

TANC2 AHI1 TRABD CECR2 PGM3

7.27e-05200965e8db082aa4d0597500e4f16a5c0ea3e62c6c59ae
DiseaseX-linked spondyloepiphyseal dysplasia tarda (implicated_via_orthology)

TRAPPC2B TRAPPC2

1.00e-052942DOID:0080362 (implicated_via_orthology)
Diseasegout

CARMIL1 LRP2 MAP3K11 ABCC9 MLXIP MED27

3.99e-05196946EFO_0004274
DiseaseIntellectual Disability

TANC2 RABL6 AHI1 BCL11B LRP2 FHIP2A DYNC1H1 PGM3

9.30e-05447948C3714756
DiseaseEye Diseases, Hereditary

LRP2 PLK4

1.49e-046942C0015398
Diseasespondyloepiphyseal dysplasia congenita (implicated_via_orthology)

TRAPPC2B TRAPPC2

1.49e-046942DOID:14789 (implicated_via_orthology)
DiseaseJoubert syndrome (implicated_via_orthology)

AHI1 CC2D2A

2.09e-047942DOID:0050777 (implicated_via_orthology)
Diseaseresponse to carboplatin, response to antineoplastic agent

LRIG1 SPEF2

4.44e-0410942GO_0097327, GO_0097328
DiseaseMeckel-Gruber syndrome

CC2D2A CSPP1

1.03e-0315942C0265215
DiseaseMeckel syndrome type 1

CC2D2A CSPP1

1.49e-0318942C3714506
DiseaseFamilial aplasia of the vermis

AHI1 CC2D2A

1.84e-0320942cv:C0431399
DiseaseJoubert syndrome 1

AHI1 CSPP1

2.03e-0321942C4551568
DiseaseSeckel syndrome

PLK4 PCNT

2.23e-0322942C0265202
DiseaseDown syndrome (is_marker_for)

ACTR1A PCNT

2.23e-0322942DOID:14250 (is_marker_for)

Protein segments in the cluster

PeptideGeneStartEntry
DHVMFRMGLLAVLRS

PGM3

36

O95394
VRMGTEPRHFMAIFK

AVIL

476

O75366
SHSRMERSVFMPRPQ

ABRAXAS2

321

Q15018
PEQTHRLARAMMAFT

SERPINF2

76

P08697
RTDRLKSDFMISHPM

AHI1

351

Q8N157
RMTPFTIPTEMHFVR

ADGB

516

Q8N7X0
DMRRDVQEIFRMTPH

DDX39B

206

Q13838
IMTRLFRTGMLEELH

ARHGEF2

256

Q92974
NPRHMEMYADRESRG

ACACA

2101

Q13085
FHMSQATRPDMIRIL

DOP1A

256

Q5JWR5
RRESRHLHLFMPAVM

ABCC9

96

O60706
EIDSPENMMRHIRFL

CCDC6

251

Q16204
RTIDMSFLHFPCSMR

AADACL3

381

Q5VUY0
QPRTLGHVMDSRVMR

CECR2

821

Q9BXF3
SERMPRRAHSNMLTI

ATG2A

1546

Q2TAZ0
ALDVVMRHLPSMRYT

AGO2

161

Q9UKV8
FMELDAGSRLVMHLR

ALG1L

6

Q6GMV1
GPRLQMDFVSFIHLM

CAPN14

636

A8MX76
RELRMPMSNVHLRGT

AOX1

1061

Q06278
MSRDEHRARAMKIPF

NFE2L1

611

Q14494
TFARFPHERATMDDM

PPP2R3B

151

Q9Y5P8
FLEMMEARSRGHASP

RABL6

271

Q3YEC7
PMSADRVVAFMDHIR

NR2F1

286

P10589
MFRVARVAAMQHGPL

GPR61

231

Q9BZJ8
PRMHEFQSEVFMIIG

KLHL6

311

Q8WZ60
PAARERRMHVMPDDD

LRIG1

641

Q96JA1
RRMHVMPDDDVFFIT

LRIG1

646

Q96JA1
HMRQVLGAPSFRMLA

FLCN

351

Q8NFG4
TRFHLPMDMVNIRHA

NRAP

626

Q86VF7
ILSAVGTFRMRHMPE

GUCY2D

956

Q02846
IRFRFMGIENIHVMR

MTMR8

266

Q96EF0
SATEMAMFRRVNEPH

LRRC7

1121

Q96NW7
GTDFPAARERRMHVM

LRIG3

641

Q6UXM1
SRDLVPRIYEMMGHV

B3GALNT1

246

O75752
MAPSHLSVREMREDE

NAT14

1

Q8WUY8
MRFDLSHGSPQMVRR

KSR1

326

Q8IVT5
SRTFLRHRVMEVMPL

PDPR

426

Q8NCN5
RFGHTMLQPFMFRLD

EPX

471

P11678
RRYPSMARIHSMTIE

PDE8B

436

O95263
ERNPMDIFDMARHRL

CSPP1

976

Q1MSJ5
FHTRFLMRMRLTPDC

DCAF10

296

Q5QP82
HPRIERASMDGSMRT

LRP2

1576

P98164
ISRIDRMFPEMSIHL

MED27

166

Q6P2C8
HFNAVLEEFPMMRRA

HCN3

521

Q9P1Z3
SHMRESFLMSPESVR

PCNT

1236

O95613
EMQHLRRMPRVRSLF

PNOC

91

Q13519
MERLVIRMPFSHLST

CD200

1

P41217
RMLPVSGAFHTRLME

MCAT

261

Q8IVS2
VFQTLPRHMRRRAMS

POP1

131

Q99575
TMEMNRFRLIGPLSH

POP1

426

Q99575
LEVRLHTFSMFGMPR

PLEKHG6

106

Q3KR16
GHTSLRPMRAEDMLR

PLEKHG6

726

Q3KR16
VPVTRRQFDHMKDMF

MLXIP

806

Q9HAP2
GNLFHRPRATVMVMV

ATP6AP2

66

O75787
TMEERFRPLTFHGLI

CLCN6

731

P51797
NMERFLHAIMPSTFI

KMO

381

O15229
HPSAFDRVMRLNPMA

BCL11B

341

Q9C0K0
HDRLQMEREMLFIPS

CC2D2A

276

Q9P2K1
SLERSMHPELMKYGR

DOCK11

306

Q5JSL3
SGRMYVTRPMDREEH

CDH4

226

P55283
MPHSIMRIDIAGRDV

ACTR1A

176

P61163
FHRRKMQVPTAEEMS

BRSK1

566

Q8TDC3
RAFDMVHDPMAALET

CUTC

146

Q9NTM9
FRPDRLLAMAHMFVS

DYNC1H1

3996

Q14204
SRMLRPVSRAFEMEF

CARMIL1

926

Q5VZK9
VHERFFIGVMEPQLM

FHIP2A

386

Q5W0V3
DMMGRHTYPILREDA

KCNIP3

196

Q9Y2W7
AQVLREMPRDSFHSM

MAP3K11

381

Q16584
HTSTEMFQGMRVRFP

DHRS3

221

O75911
RFERLETHMTPEMFR

DHX9

781

Q08211
PGFTMRRKMEHLREE

LRCH2

631

Q5VUJ6
MSHNAIRFGRMPRSE

PPARA

166

Q07869
VSGREDRPFRMMLHA

RPUSD1

196

Q9UJJ7
MKSDTFQERLRHMIP

SPEF2

131

Q9C093
RHMIPRQTDFNLMRI

SPEF2

141

Q9C093
HSREMAARALVPFVM

THADA

1361

Q6YHU6
FRDREIMFHVSTKLP

RAP1GAP2

326

Q684P5
FMRVGDPRVAHMVDS

TMEM132E

631

Q6IEE7
RTGEVMRILPRMHED

NDUFS1

266

P28331
SQMERSPMLERRHFG

SYNPO

496

Q8N3V7
PQREHMSRALADVMR

SHISA9

181

B4DS77
FLIKRRDMTRMFVHP

TANC2

751

Q9HCD6
MIEHVDYSGMRPLDR

TANC2

1191

Q9HCD6
MPARTVVFDSMRKHD

SKIV2L

671

Q15477
YPTRERASFNRMVMH

PLK4

826

O00444
IAEGIMPRHRFMSAY

SF3A2

141

Q15428
DRPFQRTVTMHKDSM

SDCBP2

186

Q9H190
DDAHFSMMVFRIGIP

SHANK1

66

Q9Y566
IHRMIEFVVREGPMF

U2SURP

431

O15042
TTLMRAMLDAHPEVR

TPST2

81

O60704
PMFVINEMRRIARHF

USP42

176

Q9H9J4
RRGSMVPFSMRILHA

TRAPPC12

471

Q8WVT3
MAEMIGEFPDLHRTI

TRABD

241

Q9H4I3
EDLMMASGRPRQRSH

WDHD1

361

O75717
FHRMMTGLRVELAPK

FAM20B

41

O75063
RETTMDFGMEPHSLF

SLAMF8

166

Q9P0V8
MATPMHRLIARRQAF

ZCCHC10

1

Q8TBK6
VTAGHMRFIMLHDIR

TRAPPC2

76

P0DI81
VTAGHMRFIMLHDIR

TRAPPC2B

76

P0DI82
SPERMMVADVFSHRF

USP11

536

P51784
SLDRHMRLHMGITPF

ZBTB34

386

Q8NCN2
TDFPAARERRMHVMP

LRIG2

641

O94898
ARERRMHVMPEDDVF

LRIG2

646

O94898
ISMMFESPFRRVMHA

NALCN

901

Q8IZF0