Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctionpolysaccharide binding

CLEC18A CLEC18B CLEC18C

6.32e-0531503GO:0030247
GeneOntologyMolecularFunctionDNA endonuclease activity

ERCC4 MUS81 POLQ

1.82e-0444503GO:0004520
GeneOntologyMolecularFunctionsingle-stranded DNA endodeoxyribonuclease activity

ERCC4 POLQ

4.71e-0413502GO:0000014
GeneOntologyMolecularFunctionDNA nuclease activity

ERCC4 MUS81 POLQ

6.32e-0467503GO:0004536
GeneOntologyBiologicalProcessdolichol-linked oligosaccharide biosynthetic process

DPAGT1 DOLK ALG3

2.00e-0522503GO:0006488
GeneOntologyBiologicalProcessdolichol metabolic process

DPAGT1 DOLK ALG3

2.62e-0524503GO:0019348
GeneOntologyBiologicalProcesspolyprenol metabolic process

DPAGT1 DOLK ALG3

4.68e-0529503GO:0016093
GeneOntologyBiologicalProcesscytochrome metabolic process

CYP2U1 CYP2W1

8.59e-056502GO:1903604
HumanPhenoType I transferrin isoform profile

DPAGT1 DOLK ALG3

3.08e-0522153HP:0003642
HumanPhenoAbnormal enzyme concentration or activity

PHEX DPAGT1 ERCC4 B3GALNT2 GLYCTK DOLK ALG3 MCCC1 CNOT1

5.35e-05729159HP:0034684
Domain-

CLEC18A CLEC18B CLEC18C

8.03e-06155033.40.33.10
DomainCAP

CLEC18A CLEC18B CLEC18C

8.03e-0615503PF00188
DomainCAP_domain

CLEC18A CLEC18B CLEC18C

8.03e-0615503IPR014044
DomainSCP

CLEC18A CLEC18B CLEC18C

8.03e-0615503SM00198
DomainAllrgn_V5/Tpx1

CLEC18A CLEC18B CLEC18C

8.03e-0615503IPR001283
Domain-

ERCC4 MUS81

2.10e-0535023.40.50.10130
DomainDNA_repair_nuc_XPF/helicase

ERCC4 MUS81

2.10e-053502IPR020819
DomainRestrct_endonuc-II-like

ERCC4 MUS81

6.99e-055502IPR011335
DomainERCC4

ERCC4 MUS81

6.99e-055502SM00891
DomainERCC4_domain

ERCC4 MUS81

6.99e-055502IPR006166
DomainERCC4

ERCC4 MUS81

6.99e-055502PF02732
DomainCyclin_L/T

CCNL2 CCNL1

1.95e-048502IPR015429
DomainC-type_lectin_CS

CLEC18A CLEC18B CLEC18C

2.07e-0443503IPR018378
DomainCyclin_C-dom

CCNL2 CCNL1

9.31e-0417502IPR004367
DomainCyclin_C

CCNL2 CCNL1

9.31e-0417502PF02984
DomainCyclin_C

CCNL2 CCNL1

9.31e-0417502SM01332
DomainC_TYPE_LECTIN_1

CLEC18A CLEC18B CLEC18C

1.28e-0380503PS00615
DomainLectin_C

CLEC18A CLEC18B CLEC18C

1.48e-0384503PF00059
DomainCLECT

CLEC18A CLEC18B CLEC18C

1.48e-0384503SM00034
DomainC_TYPE_LECTIN_2

CLEC18A CLEC18B CLEC18C

1.53e-0385503PS50041
DomainAA-permease/SLC12A_dom

SLC12A9 SLC7A10

1.57e-0322502IPR004841
DomainAA_permease

SLC12A9 SLC7A10

1.57e-0322502PF00324
DomainC-type_lectin-like

CLEC18A CLEC18B CLEC18C

1.58e-0386503IPR001304
Domain-

CLEC18A CLEC18B CLEC18C

2.23e-03975033.10.100.10
DomainC-type_lectin-like/link

CLEC18A CLEC18B CLEC18C

2.36e-0399503IPR016186
DomainCYCLINS

CCNL2 CCNL1

2.54e-0328502PS00292
DomainCTDL_fold

CLEC18A CLEC18B CLEC18C

2.95e-03107503IPR016187
DomainCyclin_N

CCNL2 CCNL1

3.52e-0333502IPR006671
DomainCyclin_N

CCNL2 CCNL1

3.52e-0333502PF00134
DomainGPS

ADGRF1 PKDREJ

3.73e-0334502SM00303
DomainGPS

ADGRF1 PKDREJ

4.41e-0337502IPR000203
DomainCYCLIN

CCNL2 CCNL1

4.64e-0338502SM00385
DomainEGF_1

CLEC18A CLEC18B NTN5 CLEC18C

4.78e-03255504PS00022
Domain-

CCNL2 CCNL1

5.13e-03405021.10.472.10
DomainEGF_2

CLEC18A CLEC18B NTN5 CLEC18C

5.47e-03265504PS01186
DomainABC_transporter_CS

ABCB8 ABCA7

5.65e-0342502IPR017871
DomainCyclin-like

CCNL2 CCNL1

5.91e-0343502IPR013763
DomainCyt_P450_E_grp-I

CYP2U1 CYP2W1

6.46e-0345502IPR002401
DomainABC_TRANSPORTER_2

ABCB8 ABCA7

7.32e-0348502PS50893
DomainABC_tran

ABCB8 ABCA7

7.32e-0348502PF00005
DomainABC_TRANSPORTER_1

ABCB8 ABCA7

7.62e-0349502PS00211
DomainABC_transporter-like

ABCB8 ABCA7

7.93e-0350502IPR003439
DomainCyt_P450_CS

CYP2U1 CYP2W1

8.87e-0353502IPR017972
DomainCYTOCHROME_P450

CYP2U1 CYP2W1

1.02e-0257502PS00086
Domain-

CYP2U1 CYP2W1

1.06e-02585021.10.630.10
Domainp450

CYP2U1 CYP2W1

1.06e-0258502PF00067
PathwayWP_GLYCOSYLATION_AND_RELATED_CONGENITAL_DEFECTS

DPAGT1 DOLK ALG3

3.38e-0525363M39813
PathwayREACTOME_DISEASES_OF_METABOLISM

DPAGT1 DOLK CYP2U1 ALG3 MCCC1

4.05e-04250365M27554
PathwayWP_NGLYCAN_BIOSYNTHESIS

DPAGT1 DOLK ALG3

4.07e-0457363M48051
PathwayKEGG_MEDICUS_REFERENCE_COPII_VESICLE_FORMATION

PREB SEC24B

4.12e-0412362M47770
PathwayREACTOME_MISCELLANEOUS_SUBSTRATES

CYP2U1 CYP2W1

4.12e-0412362M27128
PathwayKEGG_MEDICUS_REFERENCE_LESION_BYPASS_BY_TLS_AND_DSB_FORMATION

ERCC4 MUS81

6.52e-0415362M47854
PathwayREACTOME_ASPARAGINE_N_LINKED_GLYCOSYLATION

PREB DPAGT1 SEC24B DOLK ALG3

8.33e-04293365MM15120
PathwayREACTOME_MISCELLANEOUS_SUBSTRATES

CYP2U1 CYP2W1

9.46e-0418362MM14843
PathwayREACTOME_BIOSYNTHESIS_OF_THE_N_GLYCAN_PRECURSOR_DOLICHOL_LIPID_LINKED_OLIGOSACCHARIDE_LLO_AND_TRANSFER_TO_A_NASCENT_PROTEIN

DPAGT1 DOLK ALG3

9.83e-0477363MM15118
PathwayREACTOME_ASPARAGINE_N_LINKED_GLYCOSYLATION

PREB DPAGT1 SEC24B DOLK ALG3

1.03e-03307365M894
PathwayREACTOME_BIOSYNTHESIS_OF_THE_N_GLYCAN_PRECURSOR_DOLICHOL_LIPID_LINKED_OLIGOSACCHARIDE_LLO_AND_TRANSFER_TO_A_NASCENT_PROTEIN

DPAGT1 DOLK ALG3

1.06e-0379363M897
PathwayREACTOME_DISEASES_ASSOCIATED_WITH_N_GLYCOSYLATION_OF_PROTEINS

DPAGT1 ALG3

1.17e-0320362M27274
Pubmed

The C-type lectin-like domain superfamily.

CLEC18A CLEC18B CLEC18C

3.15e-09352316336259
Pubmed

Endosomal TLR3 co-receptor CLEC18A enhances host immune response to viral infection.

CLEC18A CLEC18B CLEC18C

3.15e-09352333603190
Pubmed

Human CLEC18 Gene Cluster Contains C-type Lectins with Differential Glycan-binding Specificity.

CLEC18A CLEC18B CLEC18C

3.15e-09352326170455
Pubmed

The mannose receptor mediates uptake of soluble but not of cell-associated antigen for cross-presentation.

CLEC18A CLEC18B CLEC18C

1.26e-08452316709836
Pubmed

The DNA repair endonuclease Mus81 facilitates fast DNA replication in the absence of exogenous damage.

ERCC4 MUS81

2.19e-06252225879486
Pubmed

Translational study identifies XPF and MUS81 as predictive biomarkers for oxaliplatin-based peri-operative chemotherapy in patients with esophageal adenocarcinoma.

ERCC4 MUS81

2.19e-06252229739952
Pubmed

Characterization of cyclin L1 and L2 interactions with CDK11 and splicing factors: influence of cyclin L isoforms on splice site selection.

CCNL2 CCNL1

6.57e-06352218216018
Pubmed

CDK13/CDC2L5 interacts with L-type cyclins and regulates alternative splicing.

CCNL2 CCNL1

6.57e-06352217261272
Pubmed

Characterization of cyclin L1 as an immobile component of the splicing factor compartment.

CCNL2 CCNL1

6.57e-06352217494991
Pubmed

Localization-dependent and -independent roles of SLX4 in regulating telomeres.

ERCC4 MUS81

1.31e-05452223994477
Pubmed

Neuroplastin genetically interacts with Cadherin 23 and the encoded isoform Np55 is sufficient for cochlear hair cell function and hearing.

NPTN MYO15A

1.31e-05452235100259
Pubmed

Increased expression of a 58-kDa protein kinase leads to changes in the CHO cell cycle.

CCNL2 CCNL1

1.31e-0545222217177
Pubmed

Mutations in ERCC4, encoding the DNA-repair endonuclease XPF, cause Fanconi anemia.

ERCC4 MUS81

1.31e-05452223623386
Pubmed

Mutations of the SLX4 gene in Fanconi anemia.

ERCC4 MUS81

1.31e-05452221240275
Pubmed

CDK11(p58) kinase activity is required to protect sister chromatid cohesion at centromeres in mitosis.

CCNL2 CCNL1

1.31e-05452224436071
Pubmed

Whole exome sequencing reveals uncommon mutations in the recently identified Fanconi anemia gene SLX4/FANCP.

ERCC4 MUS81

1.31e-05452223033263
Pubmed

Dopamine and glutamate induce distinct striatal splice forms of Ania-6, an RNA polymerase II-associated cyclin.

CCNL2 CCNL1

2.19e-05552211683997
Pubmed

CDK11(p58) protein kinase activity is associated with Bcl-2 down-regulation in pro-apoptosis pathway.

CCNL2 CCNL1

2.19e-05552217516030
Pubmed

SUMOylation and PARylation cooperate to recruit and stabilize SLX4 at DNA damage sites.

ERCC4 MUS81

2.19e-05552225722289
Pubmed

Regulation of multiple DNA repair pathways by the Fanconi anemia protein SLX4.

ERCC4 MUS81

2.19e-05552223093618
Pubmed

UHRF1 contributes to DNA damage repair as a lesion recognition factor and nuclease scaffold.

ERCC4 MUS81

2.19e-05552225818288
Pubmed

Comparison of the gene expression profiles from normal and Fgfrl1 deficient mouse kidneys reveals downstream targets of Fgfrl1 signaling.

CLEC18A CLEC18B CLEC18C

2.36e-053752322432025
Pubmed

SLX4 assembles a telomere maintenance toolkit by bridging multiple endonucleases with telomeres.

ERCC4 MUS81

3.28e-05652224012755
Pubmed

Congenital Disorders of N-Linked Glycosylation and Multiple Pathway Overview

DPAGT1 DOLK ALG3

4.00e-054452320301507
Pubmed

Molecular partners of hNOT/ALG3, the human counterpart of the Drosophila NOT and yeast ALG3 gene, suggest its involvement in distinct cellular processes relevant to congenital disorders of glycosylation, cancer, neurodegeneration and a variety of further pathologies.

ALG3 CNOT1

4.58e-05752229547901
Pubmed

Coordination of structure-specific nucleases by human SLX4/BTBD12 is required for DNA repair.

ERCC4 MUS81

4.58e-05752219595721
Pubmed

From arrest to escape: HIV-1 Vpr cuts a deal.

ERCC4 MUS81

4.58e-05752224528857
Pubmed

Human SLX4 is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases.

ERCC4 MUS81

6.10e-05852219596236
Pubmed

DNA damage repair machinery and HIV escape from innate immune sensing.

ERCC4 MUS81

6.10e-05852224795708
Pubmed

Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors.

CCNL2 CCNL1

7.84e-05952214623875
Pubmed

USP45 deubiquitylase controls ERCC1-XPF endonuclease-mediated DNA damage responses.

ERCC4 MUS81

9.79e-051052225538220
Pubmed

The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment.

CLEC18A CLEC18B C6orf15 CCNL1 DOLK DHRS13 ZNF767P IL27RA

1.00e-0498552812975309
Pubmed

Premature activation of the SLX4 complex by Vpr promotes G2/M arrest and escape from innate immune sensing.

ERCC4 MUS81

1.20e-041152224412650
Pubmed

A systematic gene-based screen of chr4q22-q32 identifies association of a novel susceptibility gene, DKK2, with the quantitative trait of alcohol dependence symptom counts.

SEC24B NDST4 CYP2U1

1.23e-046452320332099
Pubmed

Noncovalent interactions with SUMO and ubiquitin orchestrate distinct functions of the SLX4 complex in genome maintenance.

ERCC4 MUS81

1.69e-041352225533185
Pubmed

Variation within DNA repair pathway genes and risk of multiple sclerosis.

ERCC4 MUS81 XAB2

1.75e-047252320522537
Pubmed

Identification of FAAP24, a Fanconi anemia core complex protein that interacts with FANCM.

ERCC4 MUS81

2.27e-041552217289582
Pubmed

SLX4 interacts with RTEL1 to prevent transcription-mediated DNA replication perturbations.

ERCC4 MUS81

2.27e-041552232398829
Pubmed

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution.

ERCC4 XAB2

2.60e-041652211313499
Pubmed

Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair.

ERCC4 MUS81 NUP188

2.86e-048552319596235
Pubmed

A mega-analysis of genome-wide association studies for major depressive disorder.

HTR3D ALG3

3.69e-041952222472876
Pubmed

LMBR1L regulates lymphopoiesis through Wnt/β-catenin signaling.

PREB NPTN SLC12A9 SEC24B RHBDD3 NUP188 ESPL1

4.84e-0494252731073040
Pubmed

Proliferating cell nuclear antigen (PCNA)-binding protein C1orf124 is a regulator of translesion synthesis.

ERCC4 MUS81

4.97e-042252222902628
Pubmed

Identification of 18 mouse ABC genes and characterization of the ABC superfamily in Mus musculus.

ABCB8 ABCA7

5.44e-042352210708515
Pubmed

A mouse knockout library for secreted and transmembrane proteins.

CLEC18A CLEC18B C6orf15 DOLK CLEC18C

6.17e-0446052520562862
Pubmed

In vivo validation of late-onset Alzheimer's disease genetic risk factors.

ABCA7 CEACAM1

6.43e-042552238687251
Pubmed

Keratin 13 deficiency causes white sponge nevus in mice.

CCNL2 CCNL1

1.12e-033352232758484
Pubmed

Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries.

ARHGAP4 DOLK NUP188 ESPL1 CNOT1

1.15e-0352952514621295
Pubmed

A genome-wide association study (GWAS) for bronchopulmonary dysplasia.

NDST4 CYP2W1

1.19e-033452223897914
Pubmed

SLX4IP acts with SLX4 and XPF-ERCC1 to promote interstrand crosslink repair.

ERCC4 MUS81

1.19e-033452231495888
CytobandEnsembl 112 genes in cytogenetic band chr3q27

HTR3D ALG3 MCCC1

4.23e-04128523chr3q27
Cytoband3q27.1

HTR3D ALG3

4.34e-04275223q27.1
Cytoband9q34.11

DOLK NUP188

1.67e-03535229q34.11
Cytoband4q25

SEC24B CYP2U1

2.65e-03675224q25
Cytoband2p23.3

PREB KRTCAP3

2.73e-03685222p23.3
GeneFamilyC-type lectin domain family

CLEC18A CLEC18B CLEC18C

1.11e-0447363494
GeneFamilyCyclins

CCNL2 CCNL1

1.41e-0328362473
GeneFamilyCytochrome P450 family 2

CYP2U1 CYP2W1

2.20e-03353621001
DrugFelbinac [5728-52-9]; Down 200; 18.8uM; HL60; HT_HG-U133A

ZSWIM8 DOLK NT5M CYP2W1 IL27RA CEACAM1

5.37e-061995163061_DN
Disease2'-O-methylcytidine measurement

DOLK NUP188

2.80e-055502EFO_0800635
DiseaseCongenital disorder of glycosylation

DPAGT1 DOLK ALG3

3.70e-0538503cv:C0282577
Diseaseamino acid measurement

ABCB8 CLEC18C HTR3D MCCC1 IL27RA

5.70e-03678505EFO_0005134
Diseaseleucine measurement

CLEC18C IL27RA

6.85e-0373502EFO_0009770
Diseaseintellectual disability (implicated_via_orthology)

PREB NDST4

7.22e-0375502DOID:1059 (implicated_via_orthology)

Protein segments in the cluster

PeptideGeneStartEntry
LRLIGWASRSLHPLP

CCSMST1

16

Q4G0I0
LLLLRWRRPALHRPI

SLC7A10

406

Q9NS82
WRRPALHRPIKVNLL

SLC7A10

411

Q9NS82
LLKPPLLWSHGLIRI

ADGRF1

71

Q5T601
PARWLTHLLRLLVLG

ALG3

376

Q92685
PWLGALLQLHRPVLR

CYP2W1

221

Q8TAV3
ALQIPLPTRPHWFLL

CCNL1

256

Q9UK58
SHPLSRLLWRRLKPL

ABCA7

276

Q8IZY2
LSLGVVLPWLHRLIR

DOLK

266

Q9UPQ8
VLPWLHRLIRRNPLL

DOLK

271

Q9UPQ8
SLNLPSRLPHTWRRL

MYO15A

861

Q9UKN7
RWRHKLLLPTAASLP

DPAGT1

121

Q9H3H5
GPILRLHLPDNTLRW

IL27RA

501

Q6UWB1
PVLRHPLAWILLLSL

NIPA2

211

Q8N8Q9
DLLPQEHILLRTRPW

TEPSIN

311

Q96N21
KLLHRLGQPLPSWLR

NDST4

851

Q9H3R1
LSQRPPWSLIHRVLP

C6orf15

191

Q6UXA7
WPARLLRAPLGLLRL

CYP2U1

16

Q7Z449
ARIPHLEPWRASLLL

ESPL1

1256

Q14674
LARAPLHPLLWRGSV

GLYCTK

11

Q8IVS8
APLHRVRVPWQGLLL

CEACAM1

6

P13688
TLEIPLPNRPHWFLL

CCNL2

251

Q96S94
ALHLWLRLRSPPPAC

B3GALNT2

16

Q8NCR0
HPLPGLILEWRRITN

POLQ

2191

O75417
RNRWHRLPSLLLPPR

MCCC1

16

Q96RQ3
WLRDSRPLSPILHIV

SEC24B

1216

O95487
LLRPLAWLVLRAPRG

DHRS13

246

Q6UX07
LASRNLLRPPLHWVL

KRTCAP3

81

Q53RY4
LLRPPLHWVLLALAL

KRTCAP3

86

Q53RY4
LHLGLPWRMLRPQLV

PPEF2

601

O14830
LRSQLWAHLPRAPLA

ABCB8

66

Q9NUT2
HLQLQPPRRRLHSWA

NT5M

201

Q9NPB1
ALRALPITQHSRIWP

XAB2

136

Q9HCS7
PTRLILDRHGLALPW

NTN5

441

Q8WTR8
LDLRVLLSAQRLPWP

PKDREJ

91

Q9NTG1
LSLLNHKLPARVWLP

PI4KB

356

Q9UBF8
HVSRLLWRLPAPVLV

ARHGAP4

616

P98171
HLNLPPLLVLPTRWS

SNAI3

111

Q3KNW1
LHVATTQPLPLPRWL

HTR3D

331

Q70Z44
TQPLPLPRWLHSLLL

HTR3D

336

Q70Z44
LLSLHNRLRSWVQPP

CLEC18A

51

A5D8T8
LLSLHNRLRSWVQPP

CLEC18B

51

Q6UXF7
LLSLHNRLRSWVQPP

CLEC18C

51

Q8NCF0
RLIVNRPHPWGLLIT

CNOT1

2311

A5YKK6
PELLLDPWQVHRLLT

RHBDD3

41

Q9Y3P4
NLLHNRNFWILRLPP

ZNF767P

86

Q75MW2
HLLPSRRSVPVWLLL

PREB

381

Q9HCU5
WLRLLERALPGRAPH

MPV17L

66

Q2QL34
SPAALQRRLPILAWL

SLC26A11

26

Q86WA9
LHHVDVWPLNLLRPR

SLC12A9

721

Q9BXP2
LRVRSHLAPLWPFLG

NPTN

331

Q9Y639
PVLLAWALLRHTLNP

NUP188

321

Q5SRE5
LLHILRHSPFRWPVL

PHEX

156

P78562
LWRLAVLDPALSPQR

ZSWIM8

426

A7E2V4
LTLHFPRLRILWCPS

ERCC4

791

Q92889
AVWRHLLPALLLLVL

TMEM239

141

Q8WW34
PWPALRSLLHRNLVL

MUS81

181

Q96NY9