Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyBiologicalProcess	olfactory pit development	ASCL1 DLX5	2.75e-05	3	63	2	GO:0060166
MousePheno	abnormal visual evoked potential	CLDN11 TENM2 FOXG1 CRX	3.77e-07	16	55	4	MP:0010748
MousePheno	abnormal olfactory epithelium morphology	ASCL1 DLX5 FOXG1 CCKAR	3.67e-05	48	55	4	MP:0008789
MousePheno	abnormal olfactory system morphology	ASCL1 DLX5 FOXG1 CCKAR	6.77e-05	56	55	4	MP:0005499
MousePheno	abnormal membranous labyrinth morphology	WHRN CLDN11 SMG9 NR4A3 DLX5 BSN KLHL18	7.06e-05	262	55	7	MP:0000035
MousePheno	abnormal Purkinje cell dendrite morphology	MAP1B ATXN1 KIF14 CMYA5	7.77e-05	58	55	4	MP:0008572
MousePheno	abnormal cochlear nerve compound action potential	WHRN BSN KLHL18	1.25e-04	25	55	3	MP:0004415
MousePheno	taste/olfaction phenotype	PRUNE2 ASCL1 DLX5 FOXG1 CCKAR	1.28e-04	125	55	5	MP:0005394
MousePheno	abnormal nose morphology	ASCL1 SMG9 DLX5 PAX7 FOXG1 CCKAR	1.32e-04	201	55	6	MP:0002233
MousePheno	abnormal olfactory bulb morphology	MAP1B KIF14 DLX5 FOXG1 CCKAR	1.72e-04	133	55	5	MP:0000819
MousePheno	abnormal inner ear morphology	WHRN CLDN11 SMG9 NR4A3 DLX5 BSN KLHL18	1.74e-04	303	55	7	MP:0000026
MousePheno	abnormal endolymphatic duct morphology	SMG9 NR4A3 DLX5	2.40e-04	31	55	3	MP:0006011
MousePheno	abnormal telencephalon morphology	PIK3R4 TRIM67 MAP1B ASCL1 KIF14 NR4A3 DLX5 TENM2 FOXG1 CCKAR ALG13	2.70e-04	812	55	11	MP:0000787
MousePheno	abnormal olfactory lobe morphology	MAP1B KIF14 DLX5 FOXG1 CCKAR	2.91e-04	149	55	5	MP:0009944
MousePheno	abnormal hippocampus morphology	PIK3R4 TRIM67 MAP1B KIF14 NR4A3 FOXG1 ALG13	2.99e-04	331	55	7	MP:0000807
MousePheno	abnormal dendrite morphology	PIK3R4 MAP1B ATXN1 KIF14 LRRC7 CMYA5	3.23e-04	237	55	6	MP:0008143
MousePheno	abnormal temporal lobe morphology	PIK3R4 TRIM67 MAP1B KIF14 NR4A3 FOXG1 ALG13	3.34e-04	337	55	7	MP:0000801
MousePheno	abnormal vision	MAP1B TENM2 FOXG1 CRX	4.09e-04	89	55	4	MP:0002090
Domain	Nuc_orph_rcpt	NR4A3 NR4A1	3.14e-05	3	61	2	IPR003070
Domain	Protocadherin	PCDH11Y PCDH1	1.04e-04	5	61	2	PF08374
Domain	Protocadherin	PCDH11Y PCDH1	1.04e-04	5	61	2	IPR013585
Domain	Cadherin_CS	DSG1 PCDH11Y PCDH1 CDH5	4.43e-04	109	61	4	IPR020894
Domain	CADHERIN_1	DSG1 PCDH11Y PCDH1 CDH5	5.08e-04	113	61	4	PS00232
Domain	Cadherin	DSG1 PCDH11Y PCDH1 CDH5	5.08e-04	113	61	4	PF00028
Domain	CADHERIN_2	DSG1 PCDH11Y PCDH1 CDH5	5.25e-04	114	61	4	PS50268
Domain	-	DSG1 PCDH11Y PCDH1 CDH5	5.25e-04	114	61	4	2.60.40.60
Domain	CA	DSG1 PCDH11Y PCDH1 CDH5	5.43e-04	115	61	4	SM00112
Domain	Cadherin-like	DSG1 PCDH11Y PCDH1 CDH5	5.61e-04	116	61	4	IPR015919
Domain	Cadherin	DSG1 PCDH11Y PCDH1 CDH5	5.98e-04	118	61	4	IPR002126
Domain	ZF_RING_1	TRIM67 ZNRF3 PHRF1 IRF2BPL CNOT4	2.59e-03	291	61	5	PS00518
Domain	ZF_RING_2	TRIM67 ZNRF3 PHRF1 IRF2BPL CNOT4	2.87e-03	298	61	5	PS50089
Domain	Cadherin_cytoplasmic-dom	DSG1 CDH5	3.00e-03	25	61	2	IPR000233
Domain	Cadherin_C	DSG1 CDH5	3.00e-03	25	61	2	PF01049
Domain	Znf_RING/FYVE/PHD	TRIM67 ZNRF3 PHRF1 IRF2BPL BSN CNOT4	3.78e-03	459	61	6	IPR013083
Domain	Catenin_binding_dom	DSG1 CDH5	4.02e-03	29	61	2	IPR027397
Domain	-	DSG1 CDH5	4.02e-03	29	61	2	4.10.900.10
Domain	Znf_RING	TRIM67 ZNRF3 PHRF1 IRF2BPL CNOT4	4.20e-03	326	61	5	IPR001841
Pubmed	Genetic interactions support an inhibitory relationship between bone morphogenetic protein 2 and netrin 1 during semicircular canal formation.	NR4A3 DLX5 FOXG1	4.72e-07	9	63	3	30770380
Pubmed	Gata2 is required for the development of inner ear semicircular ducts and the surrounding perilymphatic space.	NR4A3 DLX5 FOXG1	6.74e-07	10	63	3	20652952
Pubmed	Fgf8 expression defines a morphogenetic center required for olfactory neurogenesis and nasal cavity development in the mouse.	ASCL1 DLX5 FOXG1	1.60e-06	13	63	3	16267092
Pubmed	DOT1L deletion impairs the development of cortical parvalbumin-expressing interneurons.	ASCL1 SLIT1 DLX5 FOXG1	2.48e-06	52	63	4	37566909
Pubmed	Effects of canonical Wnt signaling on dorso-ventral specification of the mouse telencephalon.	ASCL1 DLX5 FOXG1	3.12e-06	16	63	3	15708565
Pubmed	Sox2 is required for olfactory pit formation and olfactory neurogenesis through BMP restriction and Hes5 upregulation.	ASCL1 DLX5 FOXG1	3.12e-06	16	63	3	29352015
Pubmed	A central chaperone-like role for 14-3-3 proteins in human cells.	PIK3R4 RAPGEF6 MAP1B ATXN1 PSD3 KIF14 FRYL PAN3 CNOT4 NUAK2	3.20e-06	861	63	10	36931259
Pubmed	TIM-1 signaling in B cells regulates antibody production.	HAVCR1 FCER1G	3.23e-06	2	63	2	21303660
Pubmed	The orphan nuclear receptor Nor1/Nr4a3 is a negative regulator of β-cell mass.	NR4A3 NR4A1	3.23e-06	2	63	2	30696767
Pubmed	Protein kinase C regulates mitochondrial targeting of Nur77 and its family member Nor-1 in thymocytes undergoing apoptosis.	NR4A3 NR4A1	3.23e-06	2	63	2	20411565
Pubmed	NR4A3 Suppresses Lymphomagenesis through Induction of Proapoptotic Genes.	NR4A3 NR4A1	3.23e-06	2	63	2	28249906
Pubmed	Molecular signatures of thyroid follicular neoplasia.	NR4A3 NR4A1	3.23e-06	2	63	2	20668010
Pubmed	The nuclear orphan receptor NR4A1 and NR4A3 as tumor suppressors in hematologic neoplasms.	NR4A3 NR4A1	3.23e-06	2	63	2	25410408
Pubmed	Deficiency of the NR4A neuron-derived orphan receptor-1 attenuates neointima formation after vascular injury.	NR4A3 NR4A1	3.23e-06	2	63	2	19153266
Pubmed	HDAC inhibition by SNDX-275 (Entinostat) restores expression of silenced leukemia-associated transcription factors Nur77 and Nor1 and of key pro-apoptotic proteins in AML.	NR4A3 NR4A1	3.23e-06	2	63	2	23247046
Pubmed	Abrogation of nuclear receptors Nr4a3 and Nr4a1 leads to development of acute myeloid leukemia.	NR4A3 NR4A1	3.23e-06	2	63	2	17515897
Pubmed	Reduced NR4A gene dosage leads to mixed myelodysplastic/myeloproliferative neoplasms in mice.	NR4A3 NR4A1	3.23e-06	2	63	2	21205929
Pubmed	Dlx-dependent and -independent regulation of olfactory bulb interneuron differentiation.	ASCL1 SLIT1 DLX5	3.78e-06	17	63	3	17376983
Pubmed	Dlx1&2 and Mash1 transcription factors control striatal patterning and differentiation through parallel and overlapping pathways.	ASCL1 SLIT1 DLX5 NR4A1 FOXG1	4.63e-06	134	63	5	19030180
Pubmed	Impact of cytosine methylation on DNA binding specificities of human transcription factors.	ASCL1 NFIC UBP1 DLX5 PAX7 NR4A1 FOXG1 CRX	6.19e-06	544	63	8	28473536
Pubmed	Defects in brain patterning and head morphogenesis in the mouse mutant Fused toes.	ASCL1 DLX5 PAX7	8.51e-06	22	63	3	17241623
Pubmed	Nuclear receptors of the NR4a family are not required for the development and function of follicular T helper cells.	NR4A3 NR4A1	9.68e-06	3	63	2	25899083
Pubmed	NR4A nuclear receptors support memory enhancement by histone deacetylase inhibitors.	NR4A3 NR4A1	9.68e-06	3	63	2	22996661
Pubmed	Genome-wide profiling reveals transcriptional repression of MYC as a core component of NR4A tumor suppression in acute myeloid leukemia.	NR4A3 NR4A1	9.68e-06	3	63	2	23552735
Pubmed	Altered NR4A Subfamily Gene Expression Level in Peripheral Blood of Parkinson's and Alzheimer's Disease Patients.	NR4A3 NR4A1	9.68e-06	3	63	2	27159982
Pubmed	Inhibition of adipocyte differentiation by Nur77, Nurr1, and Nor1.	NR4A3 NR4A1	9.68e-06	3	63	2	18945812
Pubmed	The nuclear receptors NUR77, NURR1 and NOR1 in obesity and during fat loss.	NR4A3 NR4A1	9.68e-06	3	63	2	22143616
Pubmed	Nuclear receptors Nur77, Nurr1, and NOR-1 expressed in atherosclerotic lesion macrophages reduce lipid loading and inflammatory responses.	NR4A3 NR4A1	9.68e-06	3	63	2	16873729
Pubmed	The orphan nuclear receptor Nur77 is a determinant of myofiber size and muscle mass in mice.	NR4A3 NR4A1	9.68e-06	3	63	2	25605333
Pubmed	Induction of NR4A orphan nuclear receptor expression in macrophages in response to inflammatory stimuli.	NR4A3 NR4A1	9.68e-06	3	63	2	15964844
Pubmed	Relevance of the NR4A sub-family of nuclear orphan receptors in trophoblastic BeWo cell differentiation.	NR4A3 NR4A1	9.68e-06	3	63	2	28808448
Pubmed	The NR4A receptors Nurr1 and Nur77 are increased in human placenta from women with gestational diabetes.	NR4A3 NR4A1	9.68e-06	3	63	2	25199433
Pubmed	NR4A1 and NR4A3 restrict HSC proliferation via reciprocal regulation of C/EBPα and inflammatory signaling.	NR4A3 NR4A1	9.68e-06	3	63	2	29343483
Pubmed	NR4A nuclear receptors in immunity and atherosclerosis.	NR4A3 NR4A1	9.68e-06	3	63	2	24005216
Pubmed	Deficiency of the NR4A orphan nuclear receptor NOR1 decreases monocyte adhesion and atherosclerosis.	NR4A3 NR4A1	9.68e-06	3	63	2	20558821
Pubmed	Minireview: What is Known about SUMOylation Among NR4A Family Members?	NR4A3 NR4A1	9.68e-06	3	63	2	34437889
Pubmed	Stress and glucocorticoid regulation of NR4A genes in mice.	NR4A3 NR4A1	9.68e-06	3	63	2	24753204
Pubmed	Functional redundancy of the Nur77 and Nor-1 orphan steroid receptors in T-cell apoptosis.	NR4A3 NR4A1	9.68e-06	3	63	2	9155013
Pubmed	Differential regulation of Nr4a subfamily nuclear receptors following mast cell activation.	NR4A3 NR4A1	9.68e-06	3	63	2	21621845
Pubmed	Antithrombotic Effects of Nur77 and Nor1 Are Mediated Through Upregulating Thrombomodulin Expression in Endothelial Cells.	NR4A3 NR4A1	9.68e-06	3	63	2	26634653
Pubmed	Heterodimerization between members of the Nur subfamily of orphan nuclear receptors as a novel mechanism for gene activation.	NR4A3 NR4A1	9.68e-06	3	63	2	10523643
Pubmed	Orphan nuclear receptors in T lymphocyte development.	NR4A3 NR4A1	9.68e-06	3	63	2	12223510
Pubmed	Replicated association of the NR4A3 gene with smoking behaviour in schizophrenia and in bipolar disorder.	NR4A3 NR4A1	9.68e-06	3	63	2	20659174
Pubmed	B cell lymphoma 2 (Bcl-2) residues essential for Bcl-2's apoptosis-inducing interaction with Nur77/Nor-1 orphan steroid receptors.	NR4A3 NR4A1	9.68e-06	3	63	2	29414782
Pubmed	Nuclear Receptor Subfamily 4A Signaling as a Key Disease Pathway of CD1c+ Dendritic Cell Dysregulation in Systemic Sclerosis.	NR4A3 NR4A1	9.68e-06	3	63	2	36482877
Pubmed	Nuclear receptor 4A (NR4A) family - orphans no more.	NR4A3 NR4A1	9.68e-06	3	63	2	25917081
Pubmed	FGF-8 stimulates the expression of NR4A orphan nuclear receptors in osteoblasts.	NR4A3 NR4A1	9.68e-06	3	63	2	18809462
Pubmed	Disruption of early events in thalamocortical tract formation in mice lacking the transcription factors Pax6 or Foxg1.	ASCL1 FOXG1	9.68e-06	3	63	2	12351726
Pubmed	NR4A transcription factors limit CAR T cell function in solid tumours.	NR4A3 NR4A1	9.68e-06	3	63	2	30814732
Pubmed	The NR4A orphan nuclear receptors: mediators in metabolism and diseases.	NR4A3 NR4A1	9.68e-06	3	63	2	25089663
Pubmed	Beta-adrenergic signaling regulates NR4A nuclear receptor and metabolic gene expression in multiple tissues.	NR4A3 NR4A1	9.68e-06	3	63	2	19465082
Pubmed	MSKs are required for the transcription of the nuclear orphan receptors Nur77, Nurr1 and Nor1 downstream of MAPK signalling.	NR4A3 NR4A1	9.68e-06	3	63	2	15910281
Pubmed	Genomic analysis of mouse retinal development.	PIK3R4 NFIC SLIT1 PHRF1 PSD3 FRYL BSN KLHL18 CNOT4 CRX	1.25e-05	1006	63	10	15226823
Pubmed	The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing.	ASCL1 DLX5 FOXG1	1.27e-05	25	63	3	17679093
Pubmed	Zic1 and Zic3 regulate medial forebrain development through expansion of neuronal progenitors.	ASCL1 SLIT1 DLX5	1.27e-05	25	63	3	17507568
Pubmed	Excess neuropeptides in lung signal through endothelial cells to impair gas exchange.	ASCL1 CALCRL CDH5	1.61e-05	27	63	3	35303432
Pubmed	Pax7 is necessary and sufficient for the myogenic specification of CD45+:Sca1+ stem cells from injured muscle.	ATXN1 PAX7	1.93e-05	4	63	2	15138500
Pubmed	TOX and TOX2 transcription factors cooperate with NR4A transcription factors to impose CD8+ T cell exhaustion.	NR4A3 NR4A1	1.93e-05	4	63	2	31152140
Pubmed	Trained immunity induced by high-salt diet impedes stroke recovery.	NR4A3 NR4A1	1.93e-05	4	63	2	37965920
Pubmed	Bone marrow NR4A expression is not a dominant factor in the development of atherosclerosis or macrophage polarization in mice.	NR4A3 NR4A1	1.93e-05	4	63	2	23288947
Pubmed	A role for complement in feedback enhancement of antibody responses by IgG3.	FCER1G CR2	1.93e-05	4	63	2	12732659
Pubmed	Nr4a receptors are essential for thymic regulatory T cell development and immune homeostasis.	NR4A3 NR4A1	1.93e-05	4	63	2	23334790
Pubmed	Evaluation of mRNA Expressions of TOX and NR4As in CD8+ T cells in Acute Leukemia.	NR4A3 NR4A1	1.93e-05	4	63	2	37961948
Pubmed	Dual function of Pin1 in NR4A nuclear receptor activation: enhanced activity of NR4As and increased Nur77 protein stability.	NR4A3 NR4A1	1.93e-05	4	63	2	22789442
Pubmed	Nr4a Receptors Regulate Development and Death of Labile Treg Precursors to Prevent Generation of Pathogenic Self-Reactive Cells.	NR4A3 NR4A1	1.93e-05	4	63	2	30089271
Pubmed	Characterization of multiple sclerosis traits: nuclear receptors (NR) impaired apoptosis pathway and the role of 1-α 25-dihydroxyvitamin D3.	NR4A3 NR4A1	1.93e-05	4	63	2	21752397
Pubmed	Parathyroid hormone induces the NR4A family of nuclear orphan receptors in vivo.	NR4A3 NR4A1	1.93e-05	4	63	2	15910753
Pubmed	Cerebellar Transcriptome Profiles of ATXN1 Transgenic Mice Reveal SCA1 Disease Progression and Protection Pathways.	ATXN1 CCKAR	1.93e-05	4	63	2	26948890
Pubmed	Vascular endothelial growth factor-regulated gene expression in endothelial cells: KDR-mediated induction of Egr3 and the related nuclear receptors Nur77, Nurr1, and Nor1.	NR4A3 NR4A1	1.93e-05	4	63	2	14525795
Pubmed	Regulation of peripheral Th/Treg differentiation and suppression of airway inflammation by Nr4a transcription factors.	NR4A3 NR4A1	1.93e-05	4	63	2	33665581
Pubmed	Impaired Interneuron Development after Foxg1 Disruption.	ASCL1 SLIT1 FOXG1	2.00e-05	29	63	3	26620267
Pubmed	Transcriptional regulatory mechanisms underlying the GABAergic neuron fate in different diencephalic prosomeres.	ASCL1 PAX7 FOXG1	2.00e-05	29	63	3	22991444
Pubmed	SMRT-mediated repression of an H3K27 demethylase in progression from neural stem cell to neuron.	ASCL1 DLX5 FOXG1	2.00e-05	29	63	3	17928865
Pubmed	Regulatory pathway analysis by high-throughput in situ hybridization.	PRUNE2 PAX7 GRM3 TENM2	2.32e-05	91	63	4	17953485
Pubmed	Characterization of Glcci1 expression in a subpopulation of lateral ganglionic eminence progenitors in the mouse telencephalon.	ASCL1 FOXG1	3.22e-05	5	63	2	28744915
Pubmed	The atypical orphan nuclear receptor DAX-1 interacts with orphan nuclear receptor Nur77 and represses its transactivation.	NR4A3 NR4A1	3.22e-05	5	63	2	15155786
Pubmed	NR4A nuclear receptors restrain B cell responses to antigen when second signals are absent or limiting.	NR4A3 NR4A1	3.22e-05	5	63	2	32868928
Pubmed	Suppression of Th2 and Tfh immune reactions by Nr4a receptors in mature T reg cells.	NR4A3 NR4A1	3.22e-05	5	63	2	26304965
Pubmed	Retinoid X receptor heterodimerization and developmental expression distinguish the orphan nuclear receptors NGFI-B, Nurr1, and Nor1.	NR4A3 NR4A1	3.22e-05	5	63	2	8961274
Pubmed	Nr4a1 and Nr4a3 Reporter Mice Are Differentially Sensitive to T Cell Receptor Signal Strength and Duration.	NR4A3 NR4A1	3.22e-05	5	63	2	33147449
Pubmed	Inactivation of Fgf3 and Fgf4 within the Fgf3/Fgf4/Fgf15 gene cluster reveals their redundant requirement for mouse inner ear induction and embryonic survival.	DLX5 FOXG1	3.22e-05	5	63	2	34719815
Pubmed	A census of human transcription factors: function, expression and evolution.	ASCL1 NFIC UBP1 NR4A3 DLX5 PAX7 NR4A1 FOXG1 CRX	3.63e-05	908	63	9	19274049
Pubmed	Hes genes and neurogenin regulate non-neural versus neural fate specification in the dorsal telencephalic midline.	ASCL1 SLIT1 FOXG1	4.57e-05	38	63	3	18579678
Pubmed	NR4A receptors up-regulate the antiproteinase alpha-2 macroglobulin (A2M) and modulate MMP-2 and MMP-9 in vascular smooth muscle cells.	NR4A3 NR4A1	4.82e-05	6	63	2	25809189
Pubmed	Expression of GAD67 and Dlx5 in the taste buds of mice genetically lacking Mash1.	ASCL1 DLX5	4.82e-05	6	63	2	24682237
Pubmed	Physical interactions between Gsx2 and Ascl1 balance progenitor expansion versus neurogenesis in the mouse lateral ganglionic eminence.	ASCL1 FOXG1	4.82e-05	6	63	2	32122989
Pubmed	IgG Suppresses Antibody Responses in Mice Lacking C1q, C3, Complement Receptors 1 and 2, or IgG Fc-Receptors.	FCER1G CR2	4.82e-05	6	63	2	26619292
Pubmed	Testicular receptor 2, Nr2c1, is associated with stem cells in the developing olfactory epithelium and other cranial sensory and skeletal structures.	ASCL1 PAX7	4.82e-05	6	63	2	26712358
Pubmed	Phenotype and hematopoietic potential of side population cells throughout embryonic development.	ATXN1 CDH5	4.82e-05	6	63	2	12805065
Pubmed	Ascl1 Converts Dorsal Midbrain Astrocytes into Functional Neurons In Vivo.	ASCL1 PAX7	4.82e-05	6	63	2	26109658
Pubmed	Reciprocal signalling by Notch-Collagen V-CALCR retains muscle stem cells in their niche.	PAX7 CALCRL	6.74e-05	7	63	2	29795344
Pubmed	Arthritis critically dependent on innate immune system players.	FCER1G CR2	6.74e-05	7	63	2	11869678
Pubmed	Foxg1 is required for proper separation and formation of sensory cristae during inner ear development.	DLX5 FOXG1	6.74e-05	7	63	2	19842177
Pubmed	Endothelial cells within embryonic skeletal muscles: a potential source of myogenic progenitors.	ATXN1 PAX7	6.74e-05	7	63	2	15530859
Pubmed	Complement facilitates early prion pathogenesis.	FCER1G CR2	6.74e-05	7	63	2	11283678
Pubmed	Identity, lineage and fates of a temporally distinct progenitor population in the embryonic olfactory epithelium.	ASCL1 PAX7	6.74e-05	7	63	2	36627077
Pubmed	Embryonic Pax7-expressing progenitors contribute multiple cell types to the postnatal olfactory epithelium.	ASCL1 PAX7	6.74e-05	7	63	2	20631180
Pubmed	Tcf7l2 plays crucial roles in forebrain development through regulation of thalamic and habenular neuron identity and connectivity.	ASCL1 SLIT1 DLX5	8.68e-05	47	63	3	28219675
Pubmed	Diversity of oligosaccharide structures on the envelope glycoprotein gp 120 of human immunodeficiency virus 1 from the lymphoblastoid cell line H9. Presence of complex-type oligosaccharides with bisecting N-acetylglucosamine residues.	COLGALT1 ALG13	8.98e-05	8	63	2	2341393
Pubmed	The GPCR modulator protein RAMP2 is essential for angiogenesis and vascular integrity.	CALCRL CDH5	8.98e-05	8	63	2	18097473
Interaction	PRR12 interactions	NFIC KIF14 PAX7 ALG13 CRX	7.53e-06	88	62	5	int:PRR12
Interaction	RBFOX1 interactions	TRIM67 ATXN1 GCA ALG13 CRX	9.36e-06	92	62	5	int:RBFOX1
Cytoband	7q22	DLX5 CNOT4	1.26e-03	38	63	2	7q22
GeneFamily	Non-clustered protocadherins	PCDH11Y PCDH1	3.43e-04	12	42	2	21
GeneFamily	PDZ domain containing	WHRN RAPGEF6 LRRC7	5.26e-03	152	42	3	1220
GeneFamily	Nuclear hormone receptors	NR4A3 NR4A1	5.78e-03	49	42	2	71
GeneFamily	Fibronectin type III domain containing	FNDC3B TRIM67 CMYA5	6.06e-03	160	42	3	555
Coexpression	DESCARTES_FETAL_HEART_SATB2_LRRC7_POSITIVE_CELLS	SLIT1 PCDH11Y CACNA1I GRM3 FOXG1	8.55e-06	115	63	5	M40201
Coexpression	LAKE_ADULT_KIDNEY_C2_PODOCYTES	FNDC3B ZNRF3 PSD3 PAN3 CMYA5 TENM2	1.21e-05	212	63	6	M39221
Coexpression	MANNO_MIDBRAIN_NEUROTYPES_HRGL2A	FNDC3B CFAP77 ATXN1 SLIT1 MTTP GCA TTYH3 GRM3 PCDH1	1.28e-05	600	63	9	M39055
Coexpression	JONES_OVARY_MACROPHAGE	CLDN11 MAP1B NFIC CALCRL CMYA5 CDH5	2.61e-05	243	63	6	M48355
Coexpression	MANNO_MIDBRAIN_NEUROTYPES_HRGL1	CFAP77 ATXN1 SLIT1 PSD3 GCA NUAK2 SERTM1	2.67e-05	364	63	7	M39057
Coexpression	DESCARTES_FETAL_STOMACH_MYELOID_CELLS	FCER1G RUBCNL GCA NR4A3	3.41e-05	76	63	4	M40302
Coexpression	MANNO_MIDBRAIN_NEUROTYPES_HGABA	RAPGEF6 TRIM67 MAP1B IRF2BPL CACNA1I LRRC7 AMER3 BSN GRM3 PCDH1 TENM2	5.90e-05	1106	63	11	M39071
Coexpression	BENPORATH_ES_WITH_H3K27ME3	PRUNE2 TRIM67 ASCL1 NFIC SLIT1 NR4A3 DLX5 PAX7 CR2 FOXG1 SERTM1	6.34e-05	1115	63	11	M10371
Coexpression	MANNO_MIDBRAIN_NEUROTYPES_HRGL3	FNDC3B CFAP77 ATXN1 SLIT1 MTTP GCA NR4A3 SERTM1	6.77e-05	574	63	8	M39056
Coexpression	GSE27241_WT_VS_RORGT_KO_TH17_POLARIZED_CD4_TCELL_TREATED_WITH_DIGOXIN_UP	PRDM10 KIF14 FRYL RALGAPA2 KLHL18	7.36e-05	180	63	5	M8239
Coexpression	GSE34179_THPOK_KO_VS_WT_VA14I_NKTCELL_DN	WHRN HAVCR1 FNDC3B NR4A3 NR4A1	1.18e-04	199	63	5	M9398
Coexpression	GSE43955_TH0_VS_TGFB_IL6_IL23_TH17_ACT_CD4_TCELL_60H_UP	MFSD14B MAP1B NR4A1 BSN CR2	1.21e-04	200	63	5	M9691
Coexpression	GSE43863_DAY6_EFF_VS_DAY150_MEM_TH1_CD4_TCELL_UP	UBP1 NR4A3 IRF2BPL CR2 KLHL18	1.21e-04	200	63	5	M9742
Coexpression	GSE24210_CTRL_VS_IL35_TREATED_TCONV_CD4_TCELL_UP	PIK3R4 PSD3 IRF2BPL CR2 NUAK2	1.21e-04	200	63	5	M7841
Coexpression	DESCARTES_FETAL_LUNG_VISCERAL_NEURONS	TRIM67 MAP1B LRRC7 GRM3 FOXG1	1.59e-04	212	63	5	M40249
CoexpressionAtlas	cerebral cortex	CLDN11 TRIM67 MAP1B ASCL1 SLIT1 PCDH11Y PSD3 CACNA1I LRRC7 AMER3 PAX7 BSN GRM3 TENM2 FOXG1 SERTM1	2.29e-06	1428	62	16	cerebral cortex
CoexpressionAtlas	Progenitor-Cell-Biology-Consortium_induced-Ectoderm_fromBlastocyst-derived-humanEmbryonicStemCells_top-relative-expression-ranked_1000	PRUNE2 TMPRSS9 CFAP77 ASCL1 RUBCNL SLIT1 NR4A3 DLX5 PAX7 NR4A1 GRM3 NUAK2	2.14e-05	976	62	12	PCBC_ECTO_blastocyst_1000
CoexpressionAtlas	Progenitor-Cell-Biology-Consortium_induced-Ectoderm_top-relative-expression-ranked_500	PRUNE2 TMPRSS9 CFAP77 NR4A3 DLX5 PAX7 GRM3 NUAK2	9.23e-05	495	62	8	PCBC_ECTO_500
CoexpressionAtlas	FacebaseRNAseq_e10.5_Olfactory Pit_top-relative-expression-ranked_1000	FCER1G MAP1B ATXN1 ASCL1 PSD3 IRF2BPL DLX5 PAX7 TENM2 FOXG1 NUAK2	1.16e-04	984	62	11	Facebase_RNAseq_e10.5_Olfactory Pit_1000
CoexpressionAtlas	Progenitor-Cell-Biology-Consortium_induced-Ectoderm_from_inducedPluripotentialStemCells_derived from_from_fibroblast_top-relative-expression-ranked_1000	WHRN PRUNE2 TMPRSS9 CFAP77 SLIT1 NR4A3 DLX5 PAX7 GRM3 NUAK2 CRX	1.24e-04	991	62	11	PCBC_ECTO_fibroblast_1000
CoexpressionAtlas	ratio_induced-Ectoderm_vs_StemCell_top-relative-expression-ranked_2500_k-means-cluster#3	IGHV3-48 HAVCR1 TMPRSS9 CFAP77 ASCL1 SLIT1 NR4A3 DLX5 PAX7 NUAK2	1.60e-04	848	62	10	ratio_ECTO_vs_SC_2500_K3
CoexpressionAtlas	FacebaseRNAseq_e9.5_Olfactory Placode_top-relative-expression-ranked_100	ASCL1 DLX5 PAX7 FOXG1	1.94e-04	98	62	4	Facebase_RNAseq_e9.5_Olfactory Placode_100
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Medial Eminence_top-relative-expression-ranked_100	ASCL1 DLX5 FOXG1 NUAK2	2.02e-04	99	62	4	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Medial Eminence_100
ToppCell	facs-Kidney-nan-3m\|Kidney / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CLDN11 MFSD14B MAP1B CALCRL PAN3 CDH5	2.26e-07	182	63	6	4c5d14e33ebdf117b5aa9e2f57aaa89aa51f72bf
ToppCell	facs\|World / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ZNRF3 ATXN1 NR4A3 PAN3 TENM2	5.50e-06	179	63	5	8001db3044e8657980e24422377c4fdb0d7b323e
ToppCell	5'-GW_trimst-2-LargeIntestine-Neuronal-neurons_B-Branch_B1_(eMN)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TRIM67 MAP1B ASCL1 SLIT1 DLX5	6.12e-06	183	63	5	7e2bac8b005155888ff4b41ef2e1d975dc17abc7
ToppCell	Substantia_nigra-Neuronal\|Substantia_nigra / BrainAtlas - Mouse McCarroll V32	MAP1B LRRC7 AMER3 BSN TENM2	6.62e-06	186	63	5	3f889083fcffe516388e9b03a5e23af2010ced33
ToppCell	5'-GW_trimst-1.5-LargeIntestine-Neuronal-Glial_immature-ENCC/glia_Progenitor\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TMPRSS9 ASCL1 RUBCNL DLX5 NR4A1	6.62e-06	186	63	5	76535681667c8afb884fa72b6edfee9e1e46335b
ToppCell	5'-GW_trimst-2-LargeIntestine-Neuronal-neurons_B\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TRIM67 MAP1B ASCL1 SLIT1 DLX5	6.62e-06	186	63	5	15f2e5905486e33f6f7b3b3e9758a0559e8c61ee
ToppCell	5'-GW_trimst-2-SmallIntestine-Neuronal-neurons_A-Branch_A1_(iMN)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TRIM67 MAP1B ASCL1 SLIT1 DLX5	6.80e-06	187	63	5	a748b3a59e398e0da019db3f16d38adb1960c29f
ToppCell	B_cells-Naive_B_cells_\|World / Immune cells in Rheumatoid Arthritis Joint Synovial Tissues	RUBCNL NR4A3 NR4A1 CR2 NUAK2	6.97e-06	188	63	5	d1bc1316bbb8cfc39acc70f8680b14d19f536997
ToppCell	5'-GW_trimst-2-SmallIntestine-Neuronal-neurons_A-Branch_A4_(IN)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TMPRSS9 TRIM67 MAP1B AMER3 BSN	7.16e-06	189	63	5	cceca3d14dd559bbb2cb4b81ea12c2b62d18ee49
ToppCell	Entopeduncular-Neuronal\|Entopeduncular / BrainAtlas - Mouse McCarroll V32	MAP1B CACNA1I AMER3 BSN TENM2	7.72e-06	192	63	5	4c35e5c28a40b439044797ba1f06cb7c36b2a8de
ToppCell	CF-Myeloid\|CF / Disease state, Lineage and Cell class	FNDC3B FCER1G ATXN1 GCA RALGAPA2	8.33e-06	195	63	5	ecf604de496f389a49429d0bb211e1db6019cc8b
ToppCell	15-Trachea-Epithelial-Epithelial\|Trachea / Age, Tissue, Lineage and Cell class	MAP1B ASCL1 DLX5 PAX7 FOXG1	8.33e-06	195	63	5	9e9283a397f56732a0a5f2e2527f154d4c2dd56a
ToppCell	5'-GW_trimst-1-SmallIntestine-Neuronal\|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	MAP1B ASCL1 RUBCNL DLX5 PCDH1	8.54e-06	196	63	5	e874aa82a20bb59582c8cd7f8d30b2ed02903a85
ToppCell	3'-GW_trimst-1-SmallIntestine-Neuronal-Glial_immature-ENCC/glia_Progenitor\|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TMPRSS9 CLDN11 ASCL1 RUBCNL DLX5	9.19e-06	199	63	5	ce699726ac4825c65bf934cb9a76202ad7340596
ToppCell	Fetal_brain-organoid_Tanaka_cellReport-GW13-Mesenchymal-Mesoderm\|GW13 / Sample Type, Dataset, Time_group, and Cell type.	WHRN PHRF1 PSD3 CMYA5 PCDH1	9.41e-06	200	63	5	0f4b8b0868bda406fe6bf01d1b722510fdfd0168
ToppCell	Fetal_brain-organoid_Tanaka_cellReport-GW23-Neuronal\|GW23 / Sample Type, Dataset, Time_group, and Cell type.	MAP1B LRRC7 DLX5 TENM2	1.05e-05	96	63	4	56e993d37b7958abe56682422536045550e29b41
ToppCell	PND01-Immune-Immune_Myeloid-Monocytic-Macrophage-IM-IM_G2M\|PND01 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	FCER1G KIF14 NR4A3 KLHL18	4.90e-05	142	63	4	be63c48794a227ea55978524c0f5935342fc455e
ToppCell	Control-Myeloid-Dendritic_cells-pDC\|Control / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	FCER1G RUBCNL NR4A3 CR2	5.32e-05	145	63	4	bab85a72142b6257f7d424e5301f65b6dcdf745d
ToppCell	primary_visual_cortex-Neuronal-glutamatergic_neuron-NP\|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	ASCL1 RUBCNL SLIT1 NR4A3	6.39e-05	152	63	4	b6a7453fbf9f898e4f222b215907c9a110baa2f6
ToppCell	facs-Heart-RV-24m-Myeloid\|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	TMPRSS9 FCER1G KIF14 BSN	6.72e-05	154	63	4	709e7eedec11e675c6bbd55940f91dea5f715f4c
ToppCell	renal_medulla_nuclei-Adult_normal_reference-Epithelial-Renal_corpuscle_epithelial_cell-parietal_epithelial_cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	PRUNE2 RUBCNL SLIT1 TENM2	7.42e-05	158	63	4	e7db0ee4740e3c7a4d97d7cd7462e2c2ab458a4b
ToppCell	renal_medulla_nuclei-Adult_normal_reference-Epithelial-Renal_corpuscle_epithelial_cell-parietal_epithelial_cell-Parietal_Epithelial_Cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	PRUNE2 RUBCNL SLIT1 TENM2	7.42e-05	158	63	4	d39e020c3e77eb9d3de600a171d22f94357061d4
ToppCell	Posterior_cortex\|World / BrainAtlas - Mouse McCarroll V32	NR4A3 NR4A1 TENM2 FOXG1	7.61e-05	159	63	4	18e9fe2efbe0bca7c3990f3b12b6f549e2c1263a
ToppCell	BAL-Mild-Myeloid-cDC-cDC-cDC_5\|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	ZNF280C NR4A3 CALCRL NR4A1	7.98e-05	161	63	4	78cc5bc488bc47726195a649946d414e6bfabf94
ToppCell	facs-Lung-Endomucin_-18m-Lymphocytic\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RUBCNL CACNA1I LRRC7 CR2	8.18e-05	162	63	4	e81dec1db8e5a808d96e58410c91961e5d065c94
ToppCell	BAL-Mild-Myeloid-cDC-cDC-cDC_5\|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	ZNF280C NR4A3 CALCRL NR4A1	8.18e-05	162	63	4	0fa93efc9c005d1e649b3f7069ae8641d6e41ed8
ToppCell	facs-Lung-Endomucin_-18m-Lymphocytic-B_cell\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RUBCNL CACNA1I LRRC7 CR2	8.18e-05	162	63	4	d19b469f64c9064cfb82dadb6c8135e28949a02a
ToppCell	facs-Lung-Endomucin_-18m-Lymphocytic-B_cell\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RUBCNL CACNA1I LRRC7 CR2	8.18e-05	162	63	4	10c2aa047f33f48e4abe676236bbdb593079dd1d
ToppCell	facs-Limb_Muscle-forelimb_and_hindlimb-18m-Lymphocytic-nan\|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PHRF1 CACNA1I CR2 NUAK2	8.57e-05	164	63	4	b175258fb0885afd84d4a414c0ae441f880e8469
ToppCell	BAL-Severe-Myeloid-cDC-cDC-cDC_5\|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	NR4A3 LRRC7 CALCRL NR4A1	8.57e-05	164	63	4	3a4ecc632be003d09b765c992804134348d2278b
ToppCell	facs-Limb_Muscle-forelimb_and_hindlimb-18m-Lymphocytic-B_cell\|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PHRF1 CACNA1I CR2 NUAK2	8.57e-05	164	63	4	875d922eec7e3df0998ddf0c8c4dee2dcd5b23ca
ToppCell	facs-Limb_Muscle-forelimb_and_hindlimb-18m-Lymphocytic\|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PHRF1 CACNA1I CR2 NUAK2	8.57e-05	164	63	4	8bcfc93220d7c99dddb32b7fa7fb9aec2a1c63fa
ToppCell	BAL-Severe-Myeloid-cDC-cDC-cDC_5\|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	NR4A3 LRRC7 CALCRL NR4A1	8.57e-05	164	63	4	4b10b78d4d76023c3c5bcd427757218fdd5465ca
ToppCell	NS-control-d_0-4-Myeloid-pDC\|d_0-4 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)	RUBCNL NR4A3 CALCRL CRX	8.78e-05	165	63	4	8b2d43d7c4ee07bd999bd51bc15117ce1fbb2d86
ToppCell	control-Myeloid-pDC\|control / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls	RUBCNL NR4A3 CALCRL CRX	8.78e-05	165	63	4	243c74adf8d993ff92acbff2768bdc5a1693eca3
ToppCell	PCW_07-8.5-Neuronal-Neuronal_SCP-neuro_proliferating_SCP3_(1)\|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung	ASCL1 RUBCNL DLX5 PCDH1	9.20e-05	167	63	4	49b19159c62d33d65ed1e59a148c11ae902fd41c
ToppCell	BAL-Severe-cDC_5\|Severe / Compartment, Disease Groups and Clusters	HAVCR1 NR4A3 CALCRL NR4A1	9.41e-05	168	63	4	857a80c217a5513553460798a625612031bc7bb7
ToppCell	COVID-19-Heart-Adipocyte\|Heart / Disease (COVID-19 only), tissue and cell type	PRUNE2 PAX7 FOXG1 CCKAR	9.63e-05	169	63	4	bd39f85b48207955f80ca120a11e15a0124117b9
ToppCell	PCW_05-06-Neuronal-Neuronal_SCP-neuro_proliferating_SCP3_(1)\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	ASCL1 RUBCNL DLX5 PCDH1	9.63e-05	169	63	4	d9c3b22f62b882b8a2ea6fd9cf7afbe6d1775745
ToppCell	3'-Broncho-tracheal-Endothelial-Blood_vessel_EC-vein_endothelial_cell-EC_venous_pulmonary-EC_venous_pulmonary_L.2.2.1.0\|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	CLDN11 CALCRL RALGAPA2 CDH5	9.85e-05	170	63	4	1a568efcff9c39b3f709b55a05d24710450a2657
ToppCell	E16.5-Endothelial-Endothelial_blood-vessel-Macrovascular_EC-AEC-AEC_prolif\|E16.5 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	CALCRL CMYA5 PCDH1 CDH5	9.85e-05	170	63	4	55fe16d98ea284d05fb899888e4569c685644c7b
ToppCell	3'-Broncho-tracheal-Endothelial-Blood_vessel_EC-vein_endothelial_cell-EC_venous_pulmonary\|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	CLDN11 CALCRL RALGAPA2 CDH5	9.85e-05	170	63	4	66d41d794790e621d72ac37af995510537103c9c
ToppCell	control-Myeloid-Monocyte-derived_Macrophage\|control / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls	HAVCR1 FCER1G RUBCNL NR4A3	1.01e-04	171	63	4	e828b684744a4fdf6b63ec033c4f000b39ca0d51
ToppCell	facs-Lung-nan-3m-Lymphocytic-B_cell\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RUBCNL CMYA5 GRM3 CR2	1.01e-04	171	63	4	a31c23406cf6d6a17358a8fb41d392a7fb0306e0
ToppCell	facs-Lung-nan-3m-Lymphocytic-B_cell\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RUBCNL CMYA5 GRM3 CR2	1.01e-04	171	63	4	43d8fd9b9546e84a652564fe96b514b34b06262b
ToppCell	Endothelial-B-Donor_06\|World / lung cells shred on cell class, cell subclass, sample id	CLDN11 MAP1B CALCRL CDH5	1.03e-04	172	63	4	8a527dff06d841a86c7eb04a1dd9630787294da4
ToppCell	PND10-Endothelial-Endothelial_blood-vessel-Microvascular_EC-CAP2-CAP2_prolif\|PND10 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	WHRN NFIC PCDH1 CDH5	1.03e-04	172	63	4	490745024730df6357f6c2b81d7a64e21557c0d5
ToppCell	368C-Myeloid-Macrophage-SPP1+_Macrophage\|368C / Donor, Lineage, Cell class and subclass (all cells)	FNDC3B FCER1G TTYH3 COLGALT1	1.05e-04	173	63	4	bba8265a58f8f5659dc7b9da2fe27b15033fce34
ToppCell	droplet-Thymus-nan-21m-Lymphocytic-B_cell\|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HAVCR1 RUBCNL IRF2BPL ALG13	1.05e-04	173	63	4	0a0cd40bb5f61431fe34758626c8a63ec610a8a5
ToppCell	facs-Diaphragm-Limb_Muscle-18m-Endothelial-endothelial_cell\|Diaphragm / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	FCER1G CALCRL PCDH1 CDH5	1.05e-04	173	63	4	2a5ea28c65dd4ee03ba3d0bfe0c819b1d583f8da
ToppCell	facs-Diaphragm-Limb_Muscle-18m-Endothelial\|Diaphragm / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	FCER1G CALCRL PCDH1 CDH5	1.05e-04	173	63	4	6a7e4fa2d9d00f50decc89b535d8a68ec96de58a
ToppCell	facs-Diaphragm-Limb_Muscle-18m-Lymphocytic-B_cell\|Diaphragm / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HAVCR1 PRDM10 KIF14 CR2	1.05e-04	173	63	4	a693772987f1baee533dd0bd285a3c7b5619a73b
ToppCell	NS-control-d_0-4-Myeloid-Monocyte-derived_Macrophage\|d_0-4 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)	HAVCR1 FCER1G RUBCNL NR4A3	1.08e-04	174	63	4	758984730cd1c3ccf6866a3a8f03d6e002f3edb6
ToppCell	3'-Child04-06-SmallIntestine-Epithelial-neuro-epithelial-EC_cells_(TAC1+)\|Child04-06 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	ASCL1 AMER3 NR4A1 BSN	1.08e-04	174	63	4	a62531ebf16b32b249168dca11b870f63a8aa81c
ToppCell	5'-GW_trimst-2-LargeIntestine-Neuronal-neurons_A\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TRIM67 MAP1B ASCL1 DLX5	1.13e-04	176	63	4	116741fef5895ca85057d2d31eca9eba5764ab44
ToppCell	Control-Neuronal_cells-Neuronal_cells\|Control / group, cell type (main and fine annotations)	MAP1B CALCRL RALGAPA2 CDH5	1.13e-04	176	63	4	98c07d26ba0dc0fe15ca0ea81f633d4591782bd1
ToppCell	5'-GW_trimst-2-LargeIntestine-Neuronal-neurons_A-Branch_A1_(iMN)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TRIM67 MAP1B ASCL1 DLX5	1.13e-04	176	63	4	5b707f58d164ee7a6a527dd5d053472ce9a631c1
ToppCell	Control-Neuronal_cells\|Control / group, cell type (main and fine annotations)	MAP1B CALCRL RALGAPA2 CDH5	1.13e-04	176	63	4	c29d09ecf0eb17f767d78af4b7f2e7725c967ff8
ToppCell	3'-GW_trimst-2-LargeIntestine-Neuronal-Glial_immature-Differentiating_glia\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	TMPRSS9 ASCL1 DLX5 BSN	1.15e-04	177	63	4	0417460bdb012bc43d7254377fa53d79cdab3f34
ToppCell	368C-Myeloid-Macrophage-SPP1+_Macrophage_3\|Macrophage / Donor, Lineage, Cell class and subclass (all cells)	WHRN ZNF280C PHRF1 TTYH3	1.15e-04	177	63	4	eb0cfe8e9a91910f9979608ed47add48d98ce4dd
ToppCell	5'-GW_trimst-2-LargeIntestine-Hematopoietic-B_cells-Immature_B\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	IGHV3-48 RUBCNL CR2 IGLV8-61	1.18e-04	178	63	4	2e51c1596022b7047994ee13c18375bad19a54a5
ToppCell	5'-Parenchyma_lung-Immune_Lymphocytic-Lymphocytic_B-B_cell-B_cells-B_cells_L.1.5.0.0\|5' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	IGHV3-48 RUBCNL CR2 IGLV8-61	1.18e-04	178	63	4	6f50e2ee66bd9dc12fd3c9ea70e6d50ff76b02e8
ToppCell	facs-Lung-EPCAM-3m-Myeloid-Ccr7+_Dendritic\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HAVCR1 GCA NR4A3 NUAK2	1.18e-04	178	63	4	0b456ac768e026c3ecd5a9a4f43d6f126e7685a1
ToppCell	5'-Parenchyma_lung-Immune_Lymphocytic-Lymphocytic_B-B_cell\|5' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	IGHV3-48 RUBCNL CR2 IGLV8-61	1.18e-04	178	63	4	b132605f237e766a21042b9a65a564d64c4fec10
ToppCell	PCW_05-06-Neuronal-Neuronal_postreplicative-neuro_migrating_neuronal_(3)\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	ASCL1 RUBCNL DLX5 AMER3	1.18e-04	178	63	4	38ffbd01230c99f52274424ee6c172381daffc73
ToppCell	5'-Parenchyma_lung-Immune_Lymphocytic-Lymphocytic_B-B_cell-B_cells\|5' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	IGHV3-48 RUBCNL CR2 IGLV8-61	1.18e-04	178	63	4	99cd5e517855f1a2d6d75fb2d439751f884862c1
ToppCell	droplet-Spleen-nan-24m-Myeloid-macrophage_dendritic_cell_progenitor\|Spleen / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HAVCR1 FNDC3B FCER1G CDH5	1.20e-04	179	63	4	d50d29f26d5a2cd8c4cd4e1244e1bb8de072d159
ToppCell	10x5'-Lung-Myeloid_Dendritic-migDC\|Lung / Manually curated celltypes from each tissue	NR4A3 PROB1 CALCRL NUAK2	1.23e-04	180	63	4	e9e8992deb0beeee5548910e4616e7c990763d99
ToppCell	LPS-IL1RA-Myeloid-Neutrophils-Neutrophils\|LPS-IL1RA / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	FNDC3B FCER1G RUBCNL GCA	1.23e-04	180	63	4	c0c07937839652e01df10cc1e70aa005800ea6f6
ToppCell	LPS-IL1RA-Myeloid-Neutrophils\|LPS-IL1RA / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	FNDC3B FCER1G RUBCNL GCA	1.23e-04	180	63	4	079c199425dd3c220f03c6dca1823946f07580a1
ToppCell	Endothelial-A-HP_01\|World / lung cells shred on cell class, cell subclass, sample id	CLDN11 CALCRL PCDH1 CDH5	1.23e-04	180	63	4	4c3376169770ee9f9283daae44c17f35e46bfd19
ToppCell	5'-GW_trimst-2-LargeIntestine-Hematopoietic-B_cells\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	IGHV3-48 RUBCNL CR2 IGLV8-61	1.25e-04	181	63	4	e7d9910f6143055645b6f03b1018282e6c215f10
ToppCell	COVID-19-Endothelial_cells-Endothelial_cells_(other)\|COVID-19 / group, cell type (main and fine annotations)	CALCRL NR4A1 RALGAPA2 CDH5	1.25e-04	181	63	4	26eb4ee57a70dbf54e096b73129fda9dfda1f6ec
ToppCell	3'-GW_trimst-1.5-SmallIntestine-Neuronal-neurons_B-Branch_B1_(eMN)\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	MAP1B ASCL1 SLIT1 DLX5	1.25e-04	181	63	4	7f99002a6411117cc2361334c7c9228e20c574b4
ToppCell	PCW_05-06-Neuronal-Neuronal_SCP\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	ASCL1 RUBCNL DLX5 PCDH1	1.28e-04	182	63	4	b4fc5e4f5d8440a3c9ee0a6fd0da87b43cabc8c6
ToppCell	PCW_05-06-Neuronal-Neuronal_SCP-neuro_proliferating_SCP2_(1)\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	ASCL1 RUBCNL DLX5 PCDH1	1.28e-04	182	63	4	f7f9be9c7ef8da9864d6aefe20043b26e1bb8697
ToppCell	COVID-19-Heart-CM_4\|COVID-19 / Disease (COVID-19 only), tissue and cell type	MAP1B NR4A3 CMYA5 TENM2	1.31e-04	183	63	4	2902b6e8aa9a6f62bc1a792c971ab7f651a8e676
ToppCell	10x_3'_v2v3-Neoplastic-Stem-like-NPC-like-NPC-like_neural-A\|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	MAP1B ASCL1 DLX5 FOXG1	1.31e-04	183	63	4	af14da45267261e775dd6dab7a4c359b181e46f1
ToppCell	10x5'-GI_small-bowel-Lymphocytic_B-Naive_B_cells\|GI_small-bowel / Manually curated celltypes from each tissue	RUBCNL GCA CR2 NUAK2	1.31e-04	183	63	4	be294d22b91dbcf1e8d22e6a31c39b5caaad4751
ToppCell	PCW_07-8.5-Neuronal-Neuronal_SCP-neuro_proliferating_SCP2_(1)\|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung	ASCL1 RUBCNL DLX5 PCDH1	1.31e-04	183	63	4	e0854864d377e158a4793088d1cb6b3dbf2c805d
ToppCell	CF-Myeloid-Neutrophil\|CF / Disease state, Lineage and Cell class	FNDC3B RUBCNL GCA RALGAPA2	1.31e-04	183	63	4	da43827952e6fdee2ce94648c316182f272b321c
ToppCell	PBMC_fresh-frozen-Mild-Moderate_progression_d12-25-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c06-NR4A2\|Mild-Moderate_progression_d12-25 / Compartment, severity and other cell annotations on 10x 3' data (130k)	NR4A3 CACNA1I NR4A1 ALG13	1.34e-04	184	63	4	780d67f04fc795f614e077d8a5cf368542f6d99d
ToppCell	Posterior_cortex-Neuronal-Excitatory\|Posterior_cortex / BrainAtlas - Mouse McCarroll V32	PSD3 NR4A3 LRRC7 TENM2	1.34e-04	184	63	4	25ccf08a8a26d7e7827b6357f33a53aaf423577d
ToppCell	COVID-19-Endothelial_cells-Arterial_endothelial_cells\|COVID-19 / group, cell type (main and fine annotations)	CALCRL NR4A1 RALGAPA2 CDH5	1.34e-04	184	63	4	0f19494789f38ab1a420545e15e748ca7eb345c3
ToppCell	facs-Pancreas-Endocrine-24m-Endothelial\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HAVCR1 DLX5 CALCRL NR4A1	1.36e-04	185	63	4	7f9121bbff3471982aa8706a599922c2d28e6e9b
ToppCell	facs-Pancreas-Endocrine-24m-Endothelial-endothelial_cell\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HAVCR1 DLX5 CALCRL NR4A1	1.36e-04	185	63	4	8159e0aef2c8826e0deac6fdc90505ac0400ba2b
ToppCell	facs-Pancreas-Endocrine-24m-Endothelial-nan\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HAVCR1 DLX5 CALCRL NR4A1	1.36e-04	185	63	4	8626fb015cfa20c847661b74ef51ca0dfd1025e0
ToppCell	5'-GW_trimst-1-SmallIntestine-Neuronal-neuron_precursor-cycling_neuroblast\|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	ASCL1 RUBCNL DLX5 PCDH1	1.36e-04	185	63	4	0149981d3818a6250f32c08456c28e7037c39d91
ToppCell	PCW_05-06-Neuronal-Neuronal_SCP-neuro_proliferating_SCP1_(1)\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	TMPRSS9 ASCL1 RUBCNL DLX5	1.36e-04	185	63	4	a8946379fc066903fe8f4bc9cbf693b7b424a0cd
ToppCell	facs-Mammary_Gland-Mammary_Gland-21m\|Mammary_Gland / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	NFIC NR4A3 NR4A1 TENM2	1.39e-04	186	63	4	bd1185592aedebccd1007dbf2dd2f549fcdf9f42
ToppCell	P28-Endothelial-unknown_endothelial_cell-endothelial_unknown_1\|P28 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase	TTYH3 CALCRL PCDH1 CDH5	1.39e-04	186	63	4	a38f84f478798951c8798c8e90e4897c729cf630
ToppCell	P28-Endothelial-unknown_endothelial_cell\|P28 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase	TTYH3 CALCRL PCDH1 CDH5	1.39e-04	186	63	4	dde38decf368775694bbeae38a3ff084017c34ab
ToppCell	LV-10._Endothelium_II\|World / Chamber and Cluster_Paper	CLDN11 PCDH11Y CALCRL RALGAPA2	1.42e-04	187	63	4	7876dcb4800c2e54874df3d933efb79307a64a97
ToppCell	COPD-Endothelial-VE_Arterial\|World / Disease state, Lineage and Cell class	CALCRL RALGAPA2 PCDH1 CDH5	1.42e-04	187	63	4	be42ee71d3412bb1f52593d8814de85c354a0efa
ToppCell	kidney_cells-Adult_normal_reference-Epithelial-Renal_corpuscle_epithelial_cell-glomerular_visceral_epithelial_cell-Podocyte\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	CLDN11 MAP1B CMYA5 TENM2	1.42e-04	187	63	4	24c2a3962da364e46e98abeab5f8234376fa26bb
ToppCell	Endothelial-A-SSc-ILD_02\|World / lung cells shred on cell class, cell subclass, sample id	CLDN11 CALCRL PCDH1 CDH5	1.42e-04	187	63	4	febe0b99a6a815ce687160a0e7af55228b1d5beb
ToppCell	LA-03._Atrial_Cardiomyocyte\|World / Chamber and Cluster_Paper	PRUNE2 PSD3 LRRC7 CMYA5	1.45e-04	188	63	4	6d249fe92d51a19da19ec14bb2262d394255d577
ToppCell	Smart-seq2-spleen_(Smart-seq2)\|Smart-seq2 / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type	RUBCNL NR4A1 CR2 ALG13	1.48e-04	189	63	4	b0244a9d1b5c8ad4708750b691184f3491b13900
ToppCell	(2)_5-FU-(1)_VE-Cad+_vascular_cells\|(2)_5-FU / Stress and Cell class	FCER1G CALCRL RALGAPA2 CDH5	1.48e-04	189	63	4	0f169b17bb26a812a5b0dcd6e29a3ca8415fd197
ToppCell	facs-Brain_Non-Myeloid-Cerebellum-24m-Neuronal-nan\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRUNE2 TRIM67 MAP1B BSN	1.48e-04	189	63	4	f57200c93d39c9bce1adba0a6a1c178c028dd86b
Drug	calmidazolium chloride; Up 200; 5uM; MCF7; HT_HG-U133A_EA	MAP1B ASCL1 NR4A3 NR4A1 CNOT4 NUAK2	7.38e-06	172	62	6	906_UP
Drug	Tamoxifen citrate [54965-24-1]; Up 200; 7uM; MCF7; HT_HG-U133A	WHRN ATXN1 PSD3 NR4A3 NR4A1 NUAK2	9.87e-06	181	62	6	2212_UP
Disease	household income	ATXN1 CACNA1I BSN PCDH1 CNOT4	4.50e-04	304	62	5	EFO_0009695
Disease	beta-aminoisobutyric acid measurement	CR2 PCDH1	1.16e-03	24	62	2	EFO_0010464
Disease	blood tin measurement	SLIT1 PSD3	1.26e-03	25	62	2	EFO_0021530
Disease	free cholesterol measurement, chylomicron measurement, very low density lipoprotein cholesterol measurement	HAVCR1 PSD3 MTTP	1.62e-03	110	62	3	EFO_0008317, EFO_0008591, EFO_0008596
Disease	chylomicron measurement, total cholesterol measurement, very low density lipoprotein cholesterol measurement	HAVCR1 PSD3 MTTP	1.62e-03	110	62	3	EFO_0004574, EFO_0008317, EFO_0008596
Disease	triglyceride measurement, intermediate density lipoprotein measurement	HAVCR1 PSD3 MTTP	1.67e-03	111	62	3	EFO_0004530, EFO_0008595

Protein segments in the cluster

Peptide	Gene	Start	Entry
STSDEGYYDSFSPGL	AMER3	381	Q8N944
EPDYETSGVYSTTAS	ALG13	801	Q9NP73
AAGPASVGTSYSVYD	CFAP77	66	Q6ZQR2
TYVSTVASEGDYGET	GRM3	211	Q14832
PAYSDTYSSAGDSVY	GCA	41	P28676
STTSSGKYEDSDGCY	CCKAR	256	P32238
GSSQYSGTYASFIPS	ATXN1	131	P54253
YGYEGSESIAESLSS	CDH5	731	P33151
SATDSDYYSPTGGAP	DLX5	41	P56178
KQESGSSTSSYSGYE	RUBCNL	261	Q9H714
TYSTTGYSVDPVAGY	PAX7	446	P23759
DEALSSSGSDYYGSP	NR4A1	121	P22736
YSDFSVPSTSVGSYE	KIF14	1546	Q15058
PSDSGYSYETIGKTT	MAP1B	1916	P46821
SFPESEGYSYETSTK	MAP1B	2016	P46821
SVSSGTYSDYSPSQA	LRRC7	681	Q96NW7
SETSYSGPAVSSGYE	BSN	3176	Q9UPA5
SSSGSTIYYADSVKG	IGHV3-48	71	P01763
ASSTLSYNGTTSAYP	FOXG1	321	P55316
IEYPTGSGNVYSSAS	IRF2BPL	421	Q9H1B7
SGSSSAYTGYIERSP	MTTP	611	P55157
TGDTTSTGSEQYSDY	PCDH1	1006	Q08174
TSYEKSDGVYTGLST	FCER1G	56	P30273
RYSSSSGGSYEEEKS	FRYL	1531	O94915
SRSGSPGSSSYEHYE	PHRF1	1091	Q9P1Y6
YTADGASYTSVDGPE	PRDM10	51	Q9NQV6
GSTGQTAPYYATSTV	RALGAPA2	1701	Q2PPJ7
GYGNVTVTESYTTSD	DSG1	831	Q02413
CGLSSGSVSTSYYPS	IGLV8-61	46	A0A075B6I0
ETVGGTTYFYTDTTP	PAN3	396	Q58A45
YDGNSSLSSVETYSP	KLHL18	391	O94889
SSLEDFPYGTTVTYT	CR2	541	P20023
GSPVSSYSSDEGSYD	ASCL1	206	P50553
YGPYSDVSEITTAAG	FNDC3B	751	Q53EP0
SSSTVASYAEPGDCY	CACNA1I	421	Q9P0X4
ESGCYTPDSTSASEY	CMYA5	686	Q8N3K9
GENRFYYTAGSSSPT	CLDN11	186	O75508
YTGDDGYVSDTETSV	COLGALT1	561	Q8NBJ5
YTVSTISDGPGYSHD	CALCRL	421	Q16602
TSLSGQSYGAYSPVD	CRX	251	O43186
SSPAIGAYLSASYGD	MFSD14B	181	Q5SR56
SSSDPYSVSDCGYPV	PCDH11Y	1016	Q9BZA8
SPPGSSYAAQTYSSE	NR4A3	11	Q92570
YSTPTYTGGQSESHV	TRMT1L	691	Q7Z2T5
SSSLSDTYEPNYGTV	RAPGEF6	1436	Q8TEU7
NYSTSDSYTSPTFAG	PRUNE2	966	Q8WUY3
TSSPLYSYTTDGNDT	HAVCR1	251	Q96D42
SSSSSGSDEGTEYYP	SMG9	351	Q9H0W8
SGEEYYVASDNTGTP	TENM2	2361	Q9NT68
PGAGDTYSMVSYSDT	WHRN	511	Q9P202
SSSSSYPEYPSDAGS	SERTM1	71	A2A2V5
ESGYYSSPEPSESGE	NUAK2	456	Q9H093
VDTSPGGDYYTSPSS	NFIC	291	P08651
DSSGSSGSYYTAPGS	PROB1	26	E7EW31
STSYAGSQGPSASAY	CNOT4	146	O95628
SYVVAGSTSSPSVSY	PIK3R4	1276	Q99570
SETDSGYGSYTPSLK	TRIM67	106	Q6ZTA4
AYVGATYLSGSEAST	TMPRSS9	256	Q7Z410
ASSASENGSGAPYVY	UBP1	451	Q9NZI7
FESSPSGDYTTYTTG	ZNRF3	66	Q9ULT6
KGTNTSSPYDAGADY	ZNF280C	221	Q8ND82
DPGSYPSSAIYSAET	SLIT1	1226	O75093
LYSCGSSYGSETSIP	TTYH3	446	Q9C0H2
PGYTEDSTDVYSSQF	PSD3	431	Q9NYI0