Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyMolecularFunction	RNA polymerase II cis-regulatory region sequence-specific DNA binding	EOMES HOXA4 JUNB HOXB6 FOXD4L4 FOXD4L1 NFATC1 NFATC4 FOXD4L3 MYT1 TBX21 FOXD4L6 LHX3 LEF1 SCX HNRNPU FOXD4L5	1.82e-06	1244	73	17	GO:0000978
GeneOntologyMolecularFunction	cis-regulatory region sequence-specific DNA binding	EOMES HOXA4 JUNB HOXB6 FOXD4L4 FOXD4L1 NFATC1 NFATC4 FOXD4L3 MYT1 TBX21 FOXD4L6 LHX3 LEF1 SCX HNRNPU FOXD4L5	2.44e-06	1271	73	17	GO:0000987
GeneOntologyMolecularFunction	poly(C) RNA binding	PABPC4 HNRNPU	1.32e-05	2	73	2	GO:0017130
GeneOntologyMolecularFunction	RNA polymerase II transcription regulatory region sequence-specific DNA binding	EOMES HOXA4 JUNB HOXB6 FOXD4L4 FOXD4L1 NFATC1 NFATC4 FOXD4L3 MYT1 TBX21 FOXD4L6 LHX3 LEF1 SCX HNRNPU FOXD4L5	1.53e-05	1459	73	17	GO:0000977
GeneOntologyMolecularFunction	DNA-binding transcription factor activity, RNA polymerase II-specific	EOMES HOXA4 JUNB HOXB6 FOXD4L4 FOXD4L1 NFATC1 NFATC4 FOXD4L3 MYT1 TBX21 FOXD4L6 LHX3 LEF1 SCX FOXD4L5	4.02e-05	1412	73	16	GO:0000981
GeneOntologyMolecularFunction	semaphorin receptor binding	SEMA3A SEMA3D SEMA3C	7.88e-05	23	73	3	GO:0030215
GeneOntologyMolecularFunction	chemorepellent activity	SEMA3A SEMA3D SEMA3C	1.60e-04	29	73	3	GO:0045499
GeneOntologyMolecularFunction	transcription factor binding	EOMES JUNB NFATC1 NFATC4 RNF25 LHX3 BSN LEF1 SCX HNRNPU	3.97e-04	753	73	10	GO:0008134
GeneOntologyMolecularFunction	cobalamin binding	MTR CUBN	5.82e-04	10	73	2	GO:0031419
GeneOntologyMolecularFunction	transcription coregulator binding	NFATC1 LHX3 BSN LEF1	1.73e-03	140	73	4	GO:0001221
GeneOntologyBiologicalProcess	embryo development	EOMES HOXA4 SEMA3A BMP5 JUNB HOXB6 SEMA3C COL12A1 SF3B1 YBX1 LAMA2 ATP11A LRRC7 CUBN KDF1 LEF1 SCX OTUD7B	1.85e-06	1437	73	18	GO:0009790
GeneOntologyBiologicalProcess	muscle structure development	EOMES ARID1B NFATC1 NOL3 NFATC4 YBX1 MYT1 CNTNAP1 LAMA2 ATP11A LEF1 SCX HNRNPU	8.71e-06	858	73	13	GO:0061061
GeneOntologyBiologicalProcess	chordate embryonic development	EOMES HOXA4 BMP5 JUNB HOXB6 SEMA3C SF3B1 YBX1 ATP11A CUBN LEF1 SCX OTUD7B	1.55e-05	906	73	13	GO:0043009
GeneOntologyBiologicalProcess	embryo development ending in birth or egg hatching	EOMES HOXA4 BMP5 JUNB HOXB6 SEMA3C SF3B1 YBX1 ATP11A CUBN LEF1 SCX OTUD7B	2.02e-05	929	73	13	GO:0009792
GeneOntologyBiologicalProcess	positive regulation of transcription by RNA polymerase II	EOMES HOXA4 BMP5 JUNB SF3B1 NFATC1 NFATC4 YBX1 ZMIZ2 MYT1 ECD TBX21 LHX3 LEF1 SCX HNRNPU	2.24e-05	1390	73	16	GO:0045944
GeneOntologyBiologicalProcess	mesenchyme development	EOMES SEMA3A BMP5 SEMA3D SEMA3C NFATC1 LEF1 SCX	5.02e-05	372	73	8	GO:0060485
GeneOntologyBiologicalProcess	mesenchymal cell differentiation	EOMES SEMA3A BMP5 SEMA3D SEMA3C NFATC1 LEF1	8.47e-05	296	73	7	GO:0048762
GeneOntologyBiologicalProcess	pattern specification process	EOMES HOXA4 SEMA3A BMP5 HOXB6 SEMA3C SF3B1 LHX3 LEF1	9.70e-05	526	73	9	GO:0007389
GeneOntologyBiologicalProcess	dichotomous subdivision of terminal units involved in salivary gland branching	SEMA3A SEMA3C	1.23e-04	5	73	2	GO:0060666
GeneOntologyBiologicalProcess	neuron projection development	SEMA3A CACNA1A MAGI2 BMP5 SEMA3D SEMA3C ARID1B NFATC4 PTPRS CNTNAP1 MTR LAMA2 LRRC7 LHX3	1.43e-04	1285	73	14	GO:0031175
GeneOntologyBiologicalProcess	in utero embryonic development	EOMES BMP5 JUNB SF3B1 YBX1 ATP11A CUBN LEF1 OTUD7B	2.47e-04	596	73	9	GO:0001701
GeneOntologyCellularComponent	chromatin	EOMES HOXA4 JUNB HOXB6 FOXD4L4 ARID1B SF3B1 FOXD4L1 NFATC1 NFATC4 FOXD4L3 CPSF6 ZMIZ2 MYT1 TBX21 FOXD4L6 LHX3 LEF1 SCX FOXD4L5	1.00e-07	1480	73	20	GO:0000785
GeneOntologyCellularComponent	endoplasmic reticulum exit site	CTAGE1 SEC23IP SEC16A TFG	1.39e-05	42	73	4	GO:0070971
GeneOntologyCellularComponent	CRD-mediated mRNA stability complex	YBX1 HNRNPU	1.79e-04	6	73	2	GO:0070937
MousePheno	abnormal cervical vertebrae morphology	HOXA4 SEMA3A BMP5 HOXB6 SF3B1 IDUA	1.61e-05	120	63	6	MP:0003048
Domain	TF_fork_head_CS_2	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	8.96e-07	46	72	5	IPR030456
Domain	TF_fork_head_CS_1	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.00e-06	47	72	5	IPR018122
Domain	FH	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.24e-06	49	72	5	SM00339
Domain	FORK_HEAD_1	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.24e-06	49	72	5	PS00657
Domain	FORK_HEAD_2	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.24e-06	49	72	5	PS00658
Domain	Fork_head_dom	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.24e-06	49	72	5	IPR001766
Domain	FORK_HEAD_3	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.24e-06	49	72	5	PS50039
Domain	Forkhead	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.24e-06	49	72	5	PF00250
Domain	p53-like_TF_DNA-bd	EOMES NFATC1 NFATC4 TBX21	5.15e-05	53	72	4	IPR008967
Domain	Semaphorin	SEMA3A SEMA3D SEMA3C	5.97e-05	20	72	3	IPR027231
Domain	NFAT	NFATC1 NFATC4	1.45e-04	5	72	2	IPR008366
Domain	DDHD	PITPNM2 SEC23IP	2.18e-04	6	72	2	PF02862
Domain	DDHD	PITPNM2 SEC23IP	2.18e-04	6	72	2	PS51043
Domain	DDHD_dom	PITPNM2 SEC23IP	2.18e-04	6	72	2	IPR004177
Domain	DDHD	PITPNM2 SEC23IP	2.18e-04	6	72	2	SM01127
Domain	Sema	SEMA3A SEMA3D SEMA3C	2.29e-04	31	72	3	SM00630
Domain	Semap_dom	SEMA3A SEMA3D SEMA3C	2.29e-04	31	72	3	IPR001627
Domain	Sema	SEMA3A SEMA3D SEMA3C	2.29e-04	31	72	3	PF01403
Domain	SEMA	SEMA3A SEMA3D SEMA3C	2.29e-04	31	72	3	PS51004
Domain	RHD_dimer	NFATC1 NFATC4	6.46e-04	10	72	2	IPR032397
Domain	RHD_dimer	NFATC1 NFATC4	6.46e-04	10	72	2	PF16179
Domain	NFkB/Dor	NFATC1 NFATC4	6.46e-04	10	72	2	IPR000451
Domain	REL_1	NFATC1 NFATC4	6.46e-04	10	72	2	PS01204
Domain	RHD_DNA_bind_dom	NFATC1 NFATC4	6.46e-04	10	72	2	IPR011539
Domain	RHD_DNA_bind	NFATC1 NFATC4	6.46e-04	10	72	2	PF00554
Domain	REL_2	NFATC1 NFATC4	6.46e-04	10	72	2	PS50254
Domain	-	NFATC1 NFATC4	6.46e-04	10	72	2	2.60.40.340
Domain	PSI	SEMA3A SEMA3D SEMA3C	6.50e-04	44	72	3	IPR016201
Domain	PSI	SEMA3A SEMA3D SEMA3C	7.40e-04	46	72	3	SM00423
Domain	Homeobox_antennapedia	HOXA4 HOXB6	9.43e-04	12	72	2	IPR017995
Domain	Laminin_G	COL12A1 CNTNAP1 LAMA2	1.46e-03	58	72	3	IPR001791
Domain	-	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.53e-03	218	72	5	1.10.10.10
Domain	ConA-like_dom	RNF123 COL12A1 CNTNAP1 LAMA2 HNRNPU	1.57e-03	219	72	5	IPR013320
Domain	TF_T-box	EOMES TBX21	1.92e-03	17	72	2	IPR001699
Domain	TBOX	EOMES TBX21	1.92e-03	17	72	2	SM00425
Domain	TF_T-box_CS	EOMES TBX21	1.92e-03	17	72	2	IPR018186
Domain	-	EOMES TBX21	1.92e-03	17	72	2	2.60.40.820
Domain	TBOX_3	EOMES TBX21	1.92e-03	17	72	2	PS50252
Domain	T-box	EOMES TBX21	1.92e-03	17	72	2	PF00907
Domain	TBOX_1	EOMES TBX21	1.92e-03	17	72	2	PS01283
Domain	TBOX_2	EOMES TBX21	1.92e-03	17	72	2	PS01264
Domain	WHTH_DNA-bd_dom	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	2.42e-03	242	72	5	IPR011991
Domain	Homeobox_Antennapedia_CS	HOXA4 HOXB6	2.94e-03	21	72	2	IPR001827
Domain	ANTENNAPEDIA	HOXA4 HOXB6	3.83e-03	24	72	2	PS00032
Domain	-	SEMA3A SEMA3D SEMA3C COL12A1 NFATC1 NFATC4 PTPRS HAPLN4	3.91e-03	663	72	8	2.60.40.10
Domain	IPT	NFATC1 NFATC4	4.83e-03	27	72	2	SM00429
Domain	Ig-like_fold	SEMA3A SEMA3D SEMA3C COL12A1 NFATC1 NFATC4 PTPRS HAPLN4	5.69e-03	706	72	8	IPR013783
Domain	-	COL12A1 CNTNAP1 LAMA2	5.90e-03	95	72	3	2.60.120.200
Domain	TIG	NFATC1 NFATC4	6.34e-03	31	72	2	PF01833
Domain	IPT	NFATC1 NFATC4	6.75e-03	32	72	2	IPR002909
Pubmed	Neural transcription factors bias cleavage stage blastomeres to give rise to neural ectoderm.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	2.28e-13	6	74	5	27092474
Pubmed	The mouse fkh-2 gene. Implications for notochord, foregut, and midbrain regionalization.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	2.12e-12	8	74	5	8530406
Pubmed	An amphioxus winged helix/forkhead gene, AmphiFoxD: insights into vertebrate neural crest evolution.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	4.76e-12	9	74	5	12412011
Pubmed	A genetic study of the suppressors of the Engrailed-1 cerebellar phenotype.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	4.83e-11	13	74	5	16884697
Pubmed	Cloning and characterization of seven human forkhead proteins: binding site specificity and DNA bending.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	4.83e-11	13	74	5	7957066
Pubmed	Six members of the mouse forkhead gene family are developmentally regulated.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.12e-10	15	74	5	7689224
Pubmed	Strain-specific modifier genes of Cecr2-associated exencephaly in mice: genetic analysis and identification of differentially expressed candidate genes.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.12e-10	15	74	5	22045912
Pubmed	Expression of the winged helix genes fkh-4 and fkh-5 defines domains in the central nervous system.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.63e-10	16	74	5	8861101
Pubmed	Developmental competence of the gut endoderm: genetic potentiation by GATA and HNF3/fork head proteins.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.63e-10	16	74	5	10208738
Pubmed	Functional equivalency between Otx2 and Otx1 in development of the rostral head.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	4.32e-10	19	74	5	9895322
Pubmed	Forkhead transcription factor Foxf2 (LUN)-deficient mice exhibit abnormal development of secondary palate.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	5.75e-10	20	74	5	12812790
Pubmed	A census of human transcription factors: function, expression and evolution.	EOMES HOXA4 JUNB HOXB6 FOXD4L4 FOXD4L1 NFATC1 NFATC4 FOXD4L3 YBX1 MYT1 TBX21 KIAA1549 LHX3 LEF1	6.92e-10	908	74	15	19274049
Pubmed	Sequential roles for Otx2 in visceral endoderm and neuroectoderm for forebrain and midbrain induction and specification.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	7.53e-10	21	74	5	9449667
Pubmed	Crucial roles of Foxa2 in mouse anterior-posterior axis polarization via regulation of anterior visceral endoderm-specific genes.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	9.73e-10	22	74	5	17389379
Pubmed	Otx2 is required to respond to signals from anterior neural ridge for forebrain specification.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.57e-09	24	74	5	11820816
Pubmed	A Requirement for Zic2 in the Regulation of Nodal Expression Underlies the Establishment of Left-Sided Identity.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.57e-09	24	74	5	29992973
Pubmed	Ssdp1 regulates head morphogenesis of mouse embryos by activating the Lim1-Ldb1 complex.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	2.41e-09	26	74	5	15857913
Pubmed	Transcription and Signaling Regulators in Developing Neuronal Subtypes of Mouse and Human Enteric Nervous System.	HOXA4 SEMA3A BMP5 SEMA3D HOXB6 SEMA3C PTPRS MYT1 LEF1	3.38e-09	251	74	9	29031500
Pubmed	Molecular profiling of synovial joints: use of microarray analysis to identify factors that direct the development of the knee and elbow.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	4.34e-09	29	74	5	22972626
Pubmed	Genome-scale study of transcription factor expression in the branching mouse lung.	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 LEF1 FOXD4L5	6.79e-09	67	74	6	22711520
Pubmed	FOXD4a and FOXD4b, two new winged helix transcription factors, are expressed in human leukemia cell lines.	FOXD4L4 FOXD4L6 FOXD4L5	9.22e-08	5	74	3	12234674
Pubmed	Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus.	HOXB6 FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 LHX3 LEF1 FOXD4L5	9.42e-08	263	74	8	20932939
Pubmed	The guidance molecule Semaphorin3A is differentially involved in the arealization of the mouse and primate neocortex.	SEMA3A SEMA3C RBFOX3	1.84e-07	6	74	3	23709645
Pubmed	Slit and Semaphorin signaling governed by Islet transcription factors positions motor neuron somata within the neural tube.	SEMA3A SEMA3D SEMA3C LHX3	3.19e-07	27	74	4	25843547
Pubmed	Scleraxis and NFATc regulate the expression of the pro-alpha1(I) collagen gene in tendon fibroblasts.	NFATC1 NFATC4 SCX	3.22e-07	7	74	3	17430895
Pubmed	Characterizing WW domain interactions of tumor suppressor WWOX reveals its association with multiprotein networks.	SF3B1 CPSF6 PABPC4 SEC23IP PRRC2A HNRNPU OTUD7B	4.63e-07	220	74	7	24550385
Pubmed	Differential roles of ARID1B in excitatory and inhibitory neural progenitors in the developing cortex.	EOMES ARID1B RBFOX3	5.14e-07	8	74	3	33594090
Pubmed	Proline-rich sequence recognition: II. Proteomics analysis of Tsg101 ubiquitin-E2-like variant (UEV) interactions.	PABPC4 SEC23IP SEC16A TFG	6.49e-07	32	74	4	19542561
Pubmed	Semaphorin 3E and plexin-D1 control vascular pattern independently of neuropilins.	SEMA3A SEMA3D SEMA3C	1.10e-06	10	74	3	15550623
Pubmed	Identification of Osr2 Transcriptional Target Genes in Palate Development.	SEMA3A BMP5 SEMA3D	1.51e-06	11	74	3	28731788
Pubmed	Gene content and function of the ancestral chromosome fusion site in human chromosome 2q13-2q14.1 and paralogous regions.	FOXD4L4 FOXD4L1 FOXD4L3	1.51e-06	11	74	3	12421752
Pubmed	Functional loss of semaphorin 3C and/or semaphorin 3D and their epistatic interaction with ret are critical to Hirschsprung disease liability.	SEMA3A SEMA3D SEMA3C	2.01e-06	12	74	3	25839327
Pubmed	Nuclear factor of activated T cells (NFATc4) is required for BDNF-dependent survival of adult-born neurons and spatial memory formation in the hippocampus.	EOMES RBFOX3 NFATC4	2.01e-06	12	74	3	22586092
Pubmed	Semaphorin 3F is a bifunctional guidance cue for dopaminergic axons and controls their fasciculation, channeling, rostral growth, and intracortical targeting.	SEMA3A SEMA3D SEMA3C	2.01e-06	12	74	3	19812329
Pubmed	Deletion of Sema3a or plexinA1/plexinA3 causes defects in sensory afferent projections of statoacoustic ganglion neurons.	SEMA3A SEMA3D SEMA3C	2.01e-06	12	74	3	23991118
Pubmed	Impact of cytosine methylation on DNA binding specificities of human transcription factors.	EOMES HOXA4 JUNB HOXB6 NFATC1 NFATC4 YBX1 TBX21 LEF1	2.35e-06	544	74	9	28473536
Pubmed	A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract.	FOXD4L4 FOXD4L1 NFATC4 FOXD4L3 ZMIZ2 MYT1 TBX21 FOXD4L6 LEF1 FOXD4L5	2.58e-06	709	74	10	22988430
Pubmed	Regulation of the CUL3 Ubiquitin Ligase by a Calcium-Dependent Co-adaptor.	ARID1B SEC23IP SEC16A TFG	4.04e-06	50	74	4	27716508
Pubmed	A cascade of morphogenic signaling initiated by the meninges controls corpus callosum formation.	EOMES SEMA3C RBFOX3 LEF1	4.04e-06	50	74	4	22365545
Pubmed	Epigenetic and transcriptional programs lead to default IFN-gamma production by gammadelta T cells.	EOMES TBX21	4.47e-06	2	74	2	17312115
Pubmed	Control of effector CD8+ T cell function by the transcription factor Eomesodermin.	EOMES TBX21	4.47e-06	2	74	2	14605368
Pubmed	Inflammation programs self-reactive CD8+ T cells to acquire T-box-mediated effector function but does not prevent deletional tolerance.	EOMES TBX21	4.47e-06	2	74	2	24823810
Pubmed	Differential transcription of Eomes and T-bet during maturation of mouse uterine natural killer cells.	EOMES TBX21	4.47e-06	2	74	2	16204645
Pubmed	Effector and memory CD8+ T cell fate coupled by T-bet and eomesodermin.	EOMES TBX21	4.47e-06	2	74	2	16273099
Pubmed	Eomes cannot replace its paralog T-bet during expansion and differentiation of CD8 effector T cells.	EOMES TBX21	4.47e-06	2	74	2	32991634
Pubmed	T-BET and EOMES Accelerate and Enhance Functional Differentiation of Human Natural Killer Cells.	EOMES TBX21	4.47e-06	2	74	2	34630413
Pubmed	Cutting edge: The transcription factor eomesodermin enables CD8+ T cells to compete for the memory cell niche.	EOMES TBX21	4.47e-06	2	74	2	20935204
Pubmed	NK Cell Functional Impairment after Allogeneic Hematopoietic Stem Cell Transplantation Is Associated with Reduced Levels of T-bet and Eomesodermin.	EOMES TBX21	4.47e-06	2	74	2	26438526
Pubmed	Progenitor and terminal subsets of CD8+ T cells cooperate to contain chronic viral infection.	EOMES TBX21	4.47e-06	2	74	2	23197535
Pubmed	Differential localization of T-bet and Eomes in CD8 T cell memory populations.	EOMES TBX21	4.47e-06	2	74	2	23455505
Pubmed	Mutational spectrum of semaphorin 3A and semaphorin 3D genes in Spanish Hirschsprung patients.	SEMA3A SEMA3D	4.47e-06	2	74	2	23372769
Pubmed	Eomes+T-betlow CD8+ T Cells Are Functionally Impaired and Are Associated with Poor Clinical Outcome in Patients with Acute Myeloid Leukemia.	EOMES TBX21	4.47e-06	2	74	2	30709927
Pubmed	A tool for examining the role of the zinc finger myelin transcription factor 1 (Myt1) in neural development: Myt1 knock-in mice.	RBFOX3 MYT1	4.47e-06	2	74	2	21267777
Pubmed	IL-12 Influence mTOR to Modulate CD8+ T Cells Differentiation through T-bet and Eomesodermin in Response to Invasive Pulmonary Aspergillosis.	EOMES TBX21	4.47e-06	2	74	2	28924369
Pubmed	T-bet and Eomes are differentially linked to the exhausted phenotype of CD8+ T cells in HIV infection.	EOMES TBX21	4.47e-06	2	74	2	25032686
Pubmed	Chronic HIV infection affects the expression of the 2 transcription factors required for CD8 T-cell differentiation into cytolytic effectors.	EOMES TBX21	4.47e-06	2	74	2	22490682
Pubmed	T-BET and EOMES sustain mature human NK cell identity and antitumor function.	EOMES TBX21	4.47e-06	2	74	2	37279078
Pubmed	Bona Fide Th17 Cells without Th1 Functional Plasticity Protect against Influenza.	EOMES TBX21	4.47e-06	2	74	2	35338093
Pubmed	Characterization of eomesodermin and T-bet expression by allostimulated CD8+ T cells of healthy volunteers and kidney transplant patients in relation to graft outcome.	EOMES TBX21	4.47e-06	2	74	2	30246373
Pubmed	The low EOMES/TBX21 molecular phenotype in multiple sclerosis reflects CD56+ cell dysregulation and is affected by immunomodulatory therapies.	EOMES TBX21	4.47e-06	2	74	2	26762769
Pubmed	Eomesodermin and T-bet mark developmentally distinct human natural killer cells.	EOMES TBX21	4.47e-06	2	74	2	28289707
Pubmed	The autoimmune disease-associated transcription factors EOMES and TBX21 are dysregulated in multiple sclerosis and define a molecular subtype of disease.	EOMES TBX21	4.47e-06	2	74	2	24495857
Pubmed	The transcription factors T-bet and Eomes control key checkpoints of natural killer cell maturation.	EOMES TBX21	4.47e-06	2	74	2	22261438
Pubmed	Distinct roles of NFATc1 and NFATc4 in human primary myoblast differentiation and in the maintenance of reserve cells.	NFATC1 NFATC4	4.47e-06	2	74	2	28760926
Pubmed	Increased class 3 semaphorin expression modulates the invasive and adhesive properties of prostate cancer cells.	SEMA3A SEMA3C	4.47e-06	2	74	2	17390026
Pubmed	Eomes is sufficient to regulate IL-10 expression and cytotoxic effector molecules in murine CD4+ T cells.	EOMES TBX21	4.47e-06	2	74	2	36756120
Pubmed	T-bet and Eomes govern differentiation and function of mouse and human NK cells and ILC1.	EOMES TBX21	4.47e-06	2	74	2	29424438
Pubmed	Expression of the semaphorins Sema 3D and Sema 3F in the developing parathyroid and thymus.	SEMA3A SEMA3D SEMA3C	5.08e-06	16	74	3	18489001
Pubmed	PlexinA1 signaling directs the segregation of proprioceptive sensory axons in the developing spinal cord.	SEMA3A SEMA3D SEMA3C RBFOX3 CUBN	5.29e-06	117	74	5	17145500
Pubmed	Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders.	CACNA1A MAGI2 SF3B1 PTPRS CNTNAP1 SEC23IP SEC16A LRRC7 BSN PRRC2A HNRNPU	5.90e-06	963	74	11	28671696
Pubmed	A critical role for the chromatin remodeller CHD7 in anterior mesoderm during cardiovascular development.	SEMA3A SEMA3D SEMA3C	6.15e-06	17	74	3	26102480
Pubmed	Semaphorin signaling facilitates cleft formation in the developing salivary gland.	SEMA3A SEMA3D SEMA3C	6.15e-06	17	74	3	17626059
Pubmed	Timing specific requirement of microRNA function is essential for embryonic and postnatal hippocampal development.	EOMES RBFOX3 LEF1	7.37e-06	18	74	3	21991391
Pubmed	The USP10-HDAC6 axis confers cisplatin resistance in non-small cell lung cancer lacking wild-type p53.	SF3B1 CPSF6 PABPC4 HNRNPU	7.86e-06	59	74	4	32382008
Pubmed	KCTD13-mediated ubiquitination and degradation of GluN1 regulates excitatory synaptic transmission and seizure susceptibility.	CACNA1A PITPNM2 MAGI2 SF3B1 PTPRS PABPC4 CNTNAP1 SEC16A KIAA1549 LRRC7 BSN PRRC2A HNRNPU	9.26e-06	1431	74	13	37142655
Pubmed	Motor neurons use push-pull signals to direct vascular remodeling critical for their connectivity.	SEMA3A SEMA3D SEMA3C	1.20e-05	21	74	3	36240771
Pubmed	SOX9 is dispensable for the initiation of epigenetic remodeling and the activation of marker genes at the onset of chondrogenesis.	SEMA3D SEMA3C SCX	1.20e-05	21	74	3	30021842
Pubmed	Sall1 balances self-renewal and differentiation of renal progenitor cells.	SEMA3A BMP5 NFATC4 LEF1	1.31e-05	67	74	4	24550112
Pubmed	The influence of neuropilin-1 silencing on semaphorin 3A and 3C activity in B16(F10) murine melanoma cells.	SEMA3A SEMA3C	1.34e-05	3	74	2	22082309
Pubmed	[Role of transcription factor T-bet and Eomes in IFN-gamma secretion of different human T cell subsets].	EOMES TBX21	1.34e-05	3	74	2	20056084
Pubmed	T-bet and eomesodermin play critical roles in directing T cell differentiation to Th1 versus Th17.	EOMES TBX21	1.34e-05	3	74	2	19050290
Pubmed	T-bet and eomesodermin are required for T cell-mediated antitumor immune responses.	EOMES TBX21	1.34e-05	3	74	2	20713880
Pubmed	Developmental expression of the T-box transcription factor T-bet/Tbx21 during mouse embryogenesis.	EOMES TBX21	1.34e-05	3	74	2	12128215
Pubmed	IRF4 Regulates the Ratio of T-Bet to Eomesodermin in CD8+ T Cells Responding to Persistent LCMV Infection.	EOMES TBX21	1.34e-05	3	74	2	26714260
Pubmed	Cutting Edge: Divergent Requirement of T-Box Transcription Factors in Effector and Memory NK Cells.	EOMES TBX21	1.34e-05	3	74	2	29440505
Pubmed	Active STAT5 regulates T-bet and eomesodermin expression in CD8 T cells and imprints a T-bet-dependent Tc1 program with repressed IL-6/TGF-β1 signaling.	EOMES TBX21	1.34e-05	3	74	2	24006458
Pubmed	Defective Th1 cytokine gene transcription in CD4+ and CD8+ T cells from Wiskott-Aldrich syndrome patients.	NFATC1 TBX21	1.34e-05	3	74	2	17082665
Pubmed	Sequential actions of EOMES and T-BET promote stepwise maturation of natural killer cells.	EOMES TBX21	1.34e-05	3	74	2	34521844
Pubmed	T cells lacking HDAC11 have increased effector functions and mediate enhanced alloreactivity in a murine model.	EOMES TBX21	1.34e-05	3	74	2	28550044
Pubmed	The mTOR kinase determines effector versus memory CD8+ T cell fate by regulating the expression of transcription factors T-bet and Eomesodermin.	EOMES TBX21	1.34e-05	3	74	2	20060330
Pubmed	Apoptosis repressor with a CARD domain (ARC) restrains Bax-mediated pathogenesis in dystrophic skeletal muscle.	NOL3 LAMA2	1.34e-05	3	74	2	24312627
Pubmed	Class 3 semaphorins expression and association with innervation and angiogenesis within the degenerate human intervertebral disc.	SEMA3D SEMA3C	1.34e-05	3	74	2	26286962
Pubmed	Diverse fates of paralogs following segmental duplication of telomeric genes.	FOXD4L4 FOXD4L1 FOXD4L3	1.38e-05	22	74	3	15233989
Pubmed	Extracellular matrix secretion by cardiac fibroblasts: role of microRNA-29b and microRNA-30c.	SEMA3A SEMA3D SEMA3C COL12A1 EMILIN2 LAMA2	1.53e-05	248	74	6	24006456
Pubmed	Different timings of Dicer deletion affect neurogenesis and gliogenesis in the developing mouse central nervous system.	EOMES RBFOX3 LHX3	1.59e-05	23	74	3	19806666
Pubmed	Proteomic profiling of the TRAF3 interactome network reveals a new role for the ER-to-Golgi transport compartments in innate immunity.	MYT1 SEC16A TFG	1.59e-05	23	74	3	22792062
Pubmed	Prox1 is required for granule cell maturation and intermediate progenitor maintenance during brain neurogenesis.	EOMES RBFOX3 LEF1	1.81e-05	24	74	3	20808958
Pubmed	Sfrp1 Modulates Cell-signaling Events Underlying Telencephalic Patterning, Growth and Differentiation.	EOMES RBFOX3 LEF1	1.81e-05	24	74	3	30084950
Pubmed	A semaphorin code defines subpopulations of spinal motor neurons during mouse development.	SEMA3A SEMA3D SEMA3C	1.81e-05	24	74	3	15869472
Pubmed	WW domains provide a platform for the assembly of multiprotein networks.	SF3B1 YBX1 CPSF6 TFG HNRNPU	2.01e-05	154	74	5	16055720
Cytoband	9q21.11	FOXD4L4 FOXD4L3 FOXD4L6 FOXD4L5	1.65e-07	30	74	4	9q21.11
Cytoband	Ensembl 112 genes in cytogenetic band chr7q21	SEMA3A MAGI2 SEMA3D SEMA3C	2.03e-04	178	74	4	chr7q21
Cytoband	17q25.3	RBFOX3 CANT1 NPB	5.98e-04	101	74	3	17q25.3
GeneFamily	Immunoglobulin like domain containing\|Semaphorins	SEMA3A SEMA3D SEMA3C	1.94e-05	20	48	3	736
GeneFamily	Nuclear factors of activated T-cells	NFATC1 NFATC4	6.87e-05	5	48	2	665
GeneFamily	T-boxes	EOMES TBX21	1.03e-03	18	48	2	766
GeneFamily	PDZ domain containing	MAGI2 PARD3B LRRC7	7.64e-03	152	48	3	1220
GeneFamily	HOXL subclass homeoboxes	HOXA4 HOXB6	8.41e-03	52	48	2	518
Coexpression	MEISSNER_BRAIN_HCP_WITH_H3K27ME3	HOXA4 HOXB6 FOXD4L4 FOXD4L1 FOXD4L3 TBX21 FOXD4L6 LHX3 KDF1 FOXD4L5	6.06e-09	282	73	10	MM822
Coexpression	MIKKELSEN_MEF_HCP_WITH_H3K27ME3	FOXD4L4 RBFOX3 FOXD4L1 FOXD4L3 TBX21 FOXD4L6 LHX3 BSN KDF1 FOXD4L5	6.33e-06	601	73	10	MM866
Coexpression	BROWNE_HCMV_INFECTION_48HR_DN	CACNA1A NFATC4 CPSF6 SEC16A MTR LAMA2 CUBN IDUA HNRNPU	7.64e-06	482	73	9	M12144
Coexpression	MORI_MATURE_B_LYMPHOCYTE_UP	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.19e-05	106	73	5	MM595
Coexpression	GSE20366_TREG_VS_NAIVE_CD4_TCELL_DEC205_CONVERSION_DN	EOMES NFATC1 GYS1 CNTNAP1 HAPLN4 HNRNPU	2.04e-05	200	73	6	M4334
Coexpression	CUI_TCF21_TARGETS_2_UP	BMP5 HOXB6 SEMA3C RBFOX3 NFATC4 LAMA2 LRRC56 HNRNPU	2.92e-05	437	73	8	M1610
Coexpression	MIKKELSEN_NPC_HCP_WITH_H3K4ME3_AND_H3K27ME3	EOMES FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	3.22e-05	217	73	6	MM861
Coexpression	CUI_TCF21_TARGETS_2_UP	BMP5 HOXB6 SEMA3C RBFOX3 NFATC4 LAMA2 LRRC56 HNRNPU	3.88e-05	455	73	8	MM1189
Coexpression	BENPORATH_ES_WITH_H3K27ME3	EOMES HOXA4 CACNA1A HOXB6 FOXD4L4 COL12A1 FOXD4L1 FOXD4L3 TBX21 PARD3B LHX3 LEF1	5.53e-05	1115	73	12	M10371
Coexpression	MEISSNER_NPC_HCP_WITH_H3K4ME2_AND_H3K27ME3	FOXD4L4 RBFOX3 FOXD4L1 FOXD4L3 TBX21 FOXD4L6 FOXD4L5	6.18e-05	357	73	7	MM828
Coexpression	GSE6269_FLU_VS_STREP_PNEUMO_INF_PBMC_DN	NOL3 PTPRS TRO PABPC4 OTUD7B	1.24e-04	173	73	5	M5658
Coexpression	CLASPER_LYMPHATIC_VESSELS_DURING_METASTASIS_DN	SEMA3C EMILIN2 LAMA2	1.27e-04	35	73	3	M11788
Coexpression	CLASPER_LYMPHATIC_VESSELS_DURING_METASTASIS_DN	SEMA3C EMILIN2 LAMA2	1.39e-04	36	73	3	MM1212
CoexpressionAtlas	dev gonad_e12.5_F_VasAssMesen_MafB_k-means-cluster#1_top-relative-expression-ranked_200	SEMA3A MAGI2 BMP5 COL12A1	7.27e-06	39	68	4	gudmap_dev gonad_e12.5_F_VasAssMesen_MafB_k1_200
CoexpressionAtlas	dev gonad_e12.5_F_VasAssMesen_MafB_k-means-cluster#2_top-relative-expression-ranked_500	SEMA3A MAGI2 BMP5 COL12A1 MTR	9.78e-06	89	68	5	gudmap_dev gonad_e12.5_F_VasAssMesen_MafB_k2_500
CoexpressionAtlas	dev gonad_e12.5_F_VasAssocMesStromOvary_Sma_k-means-cluster#1_top-relative-expression-ranked_200	SEMA3A MAGI2 BMP5 COL12A1	2.32e-05	52	68	4	gudmap_dev gonad_e12.5_F_VasAssocMesStromOvary_Sma_k1_200
CoexpressionAtlas	dev gonad_e11.5_F_GonadVasMes_Flk_k-means-cluster#1_top-relative-expression-ranked_1000	SEMA3A MAGI2 BMP5 COL12A1 MTR LEF1	8.18e-05	224	68	6	gudmap_dev gonad_e11.5_F_GonadVasMes_Flk_k1_1000
CoexpressionAtlas	dev gonad_e13.5_F_VascAssocMesenchStromOvary_Sma_k-means-cluster#1_top-relative-expression-ranked_500	MAGI2 BMP5 COL12A1 MTR	9.85e-05	75	68	4	gudmap_dev gonad_e13.5_F_VascAssocMesenchStromOvary_Sma_k1_500
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_k-means-cluster#4_top-relative-expression-ranked_500	SEMA3A MAGI2 BMP5 CPSF6 EMILIN2 LEF1	1.40e-04	247	68	6	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_500_k4
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle F_emap-6706_k-means-cluster#5_top-relative-expression-ranked_1000	SEMA3A MAGI2 MAN1A2 SF3B1 NFATC1 CPSF6 EMILIN2 LEF1	1.41e-04	478	68	8	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle F_1000_k5
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_k-means-cluster#5_top-relative-expression-ranked_1000	SEMA3A BMP5 SEMA3D MAN1A2 SF3B1 NFATC1 CPSF6 EMILIN2	1.71e-04	492	68	8	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_1000_k5
CoexpressionAtlas	dev gonad_e12.5_F_VasAssocMesStromOvary_Sma_k-means-cluster#3_top-relative-expression-ranked_100	SEMA3A BMP5 COL12A1	1.75e-04	34	68	3	gudmap_dev gonad_e12.5_F_VasAssocMesStromOvary_Sma_k3_100
CoexpressionAtlas	dev gonad_e13.5_F_SupCellPrec_Sry_top-relative-expression-ranked_200	SEMA3A MAGI2 BMP5 COL12A1 MTR	1.87e-04	165	68	5	gudmap_dev gonad_e13.5_F_SupCellPrec_Sry_200
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle_emap-6706_k-means-cluster#2_top-relative-expression-ranked_1000	SEMA3A MAGI2 SEMA3D NFATC1 NFATC4 KIAA1549 LEF1	2.01e-04	377	68	7	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle_1000_k2
CoexpressionAtlas	dev gonad_e13.5_F_VascAssocMesenchStromOvary_MafB_k-means-cluster#2_top-relative-expression-ranked_500	MAGI2 BMP5 COL12A1 MTR	2.36e-04	94	68	4	gudmap_dev gonad_e13.5_F_VascAssocMesenchStromOvary_MafB_k2_500
CoexpressionAtlas	dev gonad_e13.5_F_VascAssocMesenchStromOvary_Sma_k-means-cluster#2_top-relative-expression-ranked_200	MAGI2 BMP5 COL12A1	2.85e-04	40	68	3	gudmap_dev gonad_e13.5_F_VascAssocMesenchStromOvary_Sma_k2_200
CoexpressionAtlas	DevelopingLowerUrinaryTract_e14.5_ Genital tubercle M_emap-6706_top-relative-expression-ranked_1000	SEMA3A MAGI2 BMP5 SEMA3D MAN1A2 SF3B1 NFATC1 CPSF6 EMILIN2 LEF1	3.11e-04	836	68	10	gudmap_developingLowerUrinaryTract_e14.5_ Genital tubercle M_1000
CoexpressionAtlas	DevelopingLowerUrinaryTract_e13.5_bladder mesenchyme_emap-3087_top-relative-expression-ranked_1000	SEMA3A ENDOD1 BMP5 JUNB SEMA3D COL12A1 CPSF6 TRO PARD3B LEF1	3.14e-04	837	68	10	gudmap_developingLowerUrinaryTract_e13.5_bladder mesenchyme_1000
ToppCell	facs-Brain_Non-Myeloid-Cerebellum_-18m-Neuronal-interneuron\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CACNA1A RBFOX3 TRO CNTNAP1 BSN SCX	6.97e-07	187	74	6	1b2fdbfb1ce3f19795dfc4b1da5a94f4b057ec41
ToppCell	facs-Trachea-3m-Mesenchymal-myofibroblast-tracheobronchial_smooth_muscle_cell-smooth_muscle_cell_of_trachea_l1\|3m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	BMP5 SEMA3D COL12A1 PTPRS IDUA SCX	9.44e-07	197	74	6	3fe665c0277d091290b63f0dd24c0c6536a45309
ToppCell	5'-GW_trimst-2-LymphNode-Hematopoietic-Myeloid-Lymphoid_DC\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	FOXD4L4 RBFOX3 FOXD4L1 FOXD4L3 FOXD4L6	8.95e-06	168	74	5	6dd58fd981750da49afd53796f244e1803cce97f
ToppCell	wk_15-18-Hematologic-Myeloid-aDC_1\|wk_15-18 / Celltypes from embryonic and fetal-stage human lung	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6 FOXD4L5	1.15e-05	177	74	5	ccf5dc54780d6039a4d062dee88440c011ddc0a3
ToppCell	BAL-Mild-Myeloid-cDC-cDC-cDC_10\|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	SEMA3D FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L5	1.25e-05	180	74	5	32d871738a24071b70084a7e80148a516110c78b
ToppCell	BAL-Mild-Myeloid-cDC-cDC-cDC_10\|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	SEMA3D FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L5	1.25e-05	180	74	5	067ca8a15228c7f3b3bc7aecbc9b1611ca05e176
ToppCell	3'-Child04-06-SmallIntestine-Mesenchymal-fibroblastic-Stromal_4_(MMP1+)\|Child04-06 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	HOXA4 BMP5 COL12A1 PTPRS LAMA2	1.35e-05	183	74	5	269afec240a756eec3bbae5f30ec784281af3433
ToppCell	renal_cortex_nuclei-Adult_normal_reference-Mesenchymal-glomerular_mesenchymal_cell-Mesangial_Cell-mesangial_typical-aged\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	CACNA1A COL12A1 CNTNAP1 LAMA2 KIAA1549	1.54e-05	188	74	5	32f22a4d8cb98fd8b8fa0fbf28ef9266d711d081
ToppCell	PCW_07-8.5-Mesenchymal-Mesenchymal_myocytic\|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung	SEMA3C LAMA2 LRRC7 LEF1 SCX	1.58e-05	189	74	5	f75cebd4c3e54e297557449ba67ccc8d1a2a14f5
ToppCell	facs-Brain_Non-Myeloid-Cerebellum-24m-Neuronal-nan\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CACNA1A RBFOX3 CNTNAP1 HAPLN4 BSN	1.58e-05	189	74	5	f57200c93d39c9bce1adba0a6a1c178c028dd86b
ToppCell	renal_papilla_nuclei-Adult_normal_reference-Mesenchymal-Myocytic_interstitial_cell-Myofibroblast-\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	SEMA3A SEMA3D SEMA3C LAMA2 LRRC7	1.62e-05	190	74	5	562ee3b025c29edf07b8b344323edb49d82f1c7e
ToppCell	10x_3'_v2v3-Non-neoplastic-Myeloid-TAM-MG-TAM-MG_pro-infl_II-Z\|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	JUNB RBFOX3 NFATC1 CTAGE1 HNRNPU	1.62e-05	190	74	5	4d401b73c0e7eb38e95d0851a128bf12bb0d3a9f
ToppCell	renal_papilla_nuclei-Adult_normal_reference-Mesenchymal-Myocytic_interstitial_cell-Myofibroblast\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	SEMA3A SEMA3D SEMA3C LAMA2 LRRC7	1.62e-05	190	74	5	f5fb989afabb49d64d91324570cd8c80a4b9e67d
ToppCell	Control-Stromal_mesenchymal-Lung_smooth_muscle-Myofibroblast\|Control / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	MAGI2 SEMA3D SEMA3C PTPRS SCX	1.66e-05	191	74	5	b133ee1c0e58d00ddd2e4e05b01fd04947524c18
ToppCell	Fetal_29-31_weeks-Mesenchymal-matrix_fibroblast_2_cell\|Fetal_29-31_weeks / Lineage, Cell type, age group and donor	SEMA3D COL12A1 LAMA2 PARD3B LRRC7	1.70e-05	192	74	5	8d56e360ebc624ca4cd7f0af4f3cc599c244f134
ToppCell	wk_08-11-Mesenchymal-Myofibro_&_SMC-Early_airway_SMC_1\|wk_08-11 / Celltypes from embryonic and fetal-stage human lung	JUNB SEMA3C NPB LRRC7 LEF1	1.70e-05	192	74	5	7ae3e1ca8bfc078c0e12a1595ecb0e343dab5d2f
ToppCell	wk_20-22-Mesenchymal-Myofibro_&_SMC-Myofibro_2\|wk_20-22 / Celltypes from embryonic and fetal-stage human lung	SEMA3A SEMA3C COL12A1 NPB LEF1	1.75e-05	193	74	5	2f203f6f0c2135acb046c9351a633c3b5b254a46
ToppCell	facs-Brain_Non-Myeloid-Cerebellum-24m-Neuronal\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CACNA1A RBFOX3 CNTNAP1 LHX3 BSN	1.75e-05	193	74	5	5fb7808dd971c1cc64c2bd4f8f1de646fb2d77f4
ToppCell	PCW_05-06-Mesenchymal-Mesenchymal_myocytic-mes_immature_ASM1_(8)\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	BMP5 YBX1 LAMA2 LRRC7 LEF1	1.75e-05	193	74	5	e2b455387d1de7812305200a2041a0f4759a6f54
ToppCell	COVID-19-Fibroblasts-Alveolar_FB\|COVID-19 / group, cell type (main and fine annotations)	MAGI2 BMP5 PTPRS LAMA2 PARD3B	1.84e-05	195	74	5	603050beeb33c331d4b2e3fa46cae3f3e0e4bdc7
ToppCell	facs-Lung-ENDOMUCIN-18m-Endothelial-Capillary_Aerocyte_endothelial_cell\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PITPNM2 ENDOD1 COL12A1 RBFOX3 KIAA1549	1.84e-05	195	74	5	cad21edd90bf3e2fefdf5773a59cb1a664a69ddd
ToppCell	facs-Lung-18m-Endothelial-capillary_endothelial-capillary_endothelial_cell-capillary_aerocyte_endothelial_cell\|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	PITPNM2 ENDOD1 COL12A1 RBFOX3 KIAA1549	1.84e-05	195	74	5	7e0ef92059ff34e368d2324815f49b50e3ca7332
ToppCell	-Cryobiopsy_01\|World / lung cells shred on cell class, cell subclass, sample id	EOMES BMP5 SEMA3D TBX21 LAMA2	1.84e-05	195	74	5	e5b0afbea85575851cf9eb50a9ac42c67bbf3d7c
ToppCell	5'-Adult-Appendix\|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract	SEMA3A JUNB NFATC1 PTPRS LAMA2	1.88e-05	196	74	5	a579211ef14f348d0c5a290553150222dfbf1515
ToppCell	COVID-19-Fibroblasts\|COVID-19 / group, cell type (main and fine annotations)	MAGI2 BMP5 PTPRS LAMA2 PARD3B	1.93e-05	197	74	5	fb847f2277609c31fffcdf49517243ce0684facf
ToppCell	PCW_10-12-Mesenchymal-Mesenchymal_fibroblastic-mes_immature1_(0)\|PCW_10-12 / Celltypes from embryonic and fetal-stage human lung	SEMA3A BMP5 SEMA3D LAMA2 PARD3B	1.93e-05	197	74	5	11a4c417f035e554431a8f03be13b5eefa3530c0
ToppCell	facs-Trachea-nan-3m-Mesenchymal-chondrocyte\|Trachea / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	BMP5 COL12A1 NFATC1 KIAA1549 IDUA	1.98e-05	198	74	5	71e847e8c24744d6df4a960348ad2ecf310373b4
ToppCell	Transverse-T_cell-Tfh\|T_cell / Region, Cell class and subclass	PITPNM2 NOL3 LRRC56 ARHGAP27 LEF1	2.02e-05	199	74	5	33ffea12b8228e0b5bd8942531c3b21d24224725
ToppCell	Brain_organoid-organoid_Tanaka_cellReport-6m-Neuronal-Intermediate\|6m / Sample Type, Dataset, Time_group, and Cell type.	SEMA3A MAN1A2 PABPC4 LAMA2 HNRNPU	2.07e-05	200	74	5	7c261e39ac30b318511373ab7302aa53b8b81b9c
ToppCell	(0)_Normal/No_Treatment-(4)_COL2.3+_osteoblasts\|World / Stress and Cell class	ENDOD1 PTPRS PABPC4 LEF1	1.05e-04	147	74	4	87c24843cb0e87ad42e725d08423131a5d2d25a3
ToppCell	Fetal_brain-organoid_Tanaka_cellReport-GW10-OPC_related-Oligodendrocyte/OPC\|GW10 / Sample Type, Dataset, Time_group, and Cell type.	EOMES LAMA2 LRRC56 CUBN	1.17e-04	151	74	4	4533bccc996395f74b16af939ce79b6fe253c073
ToppCell	primary_visual_cortex-Neuronal-GABAergic_neuron-Sst-Sst_Rxfp1_Prdm8\|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	SEMA3D EMILIN2 PARD3B B3GAT2	1.17e-04	151	74	4	090b067873740c282865e2d02cf47d5cb3dd7607
ToppCell	Fetal_brain-organoid_Tanaka_cellReport-GW10-OPC_related\|GW10 / Sample Type, Dataset, Time_group, and Cell type.	EOMES LAMA2 LRRC56 CUBN	1.17e-04	151	74	4	edb2f59789c295838d2030b80c792cbea25eaa3d
ToppCell	E16.5-samps-Mesenchymal-Myofibroblast-Migrating_MyoFibroblast\|E16.5-samps / Age Group, Lineage, Cell class and subclass	ENDOD1 NPB LAMA2 LEF1	1.29e-04	155	74	4	1882fa5fd25f77d6e3ac47b613f6fb3c67d8e50c
ToppCell	facs-SCAT-Fat-3m-Lymphocytic-CD4-positive,_alpha-beta_T_cell\|SCAT / Fat_BAT_GAT_MAT_SCAT - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EOMES NPB TBX21 BSN	1.29e-04	155	74	4	93513bab53b40e9c3c91ab8e3316ea00a4f66cd2
ToppCell	PND01-Mesenchymal-Mesenchymal_structural-Fibroblastic-AF1-AF1_prolif\|PND01 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	SEMA3D NFATC4 TRO B3GAT2	1.32e-04	156	74	4	895927228c93cd090303984c5be6ebfb59ed6f3a
ToppCell	droplet-Liver-Hepatocytes-18m-Myeloid\|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HOXA4 MAGI2 HOXB6 ATP11A	1.39e-04	158	74	4	d3446fc98eff09c3626b47a2c90d07cd985378b5
ToppCell	droplet-Liver-Hepatocytes-18m-Myeloid-Kupffer_cell\|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HOXA4 MAGI2 HOXB6 ATP11A	1.39e-04	158	74	4	df614450e10629dc9115d7365397663e82f9e48f
ToppCell	facs-Marrow-Granulocytes-3m-Lymphocytic\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EOMES RBFOX3 TBX21 LAMA2	1.46e-04	160	74	4	8590281165eab6514a9f6a022b900d4c222c1044
ToppCell	facs-Marrow-T-cells-24m-Lymphocytic-mature_alpha-beta_T_cell\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EOMES TBX21 LRRC7 LEF1	1.53e-04	162	74	4	b5b2cdbcc5bbfab52cc7d8a5504d34bb2e73771a
ToppCell	facs-Marrow-T-cells-24m-Lymphocytic-BM_CD8_+_CD4_T_cell\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EOMES TBX21 LRRC7 LEF1	1.53e-04	162	74	4	4f9cf67b4b00b1cf78eeb9be1c701d535021a61d
ToppCell	facs-Skin-nan-24m-Epithelial-bulge_keratinocyte\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HOXB6 COL12A1 NFATC1 SCX	1.61e-04	164	74	4	7a65c7a6dbe5fb9067f83efafbb7ec8206d79325
ToppCell	renal_cortex_nuclei-CKD+DKD_normotensive-Mesenchymal-glomerular_mesenchymal_cell\|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group	CACNA1A COL12A1 LAMA2 KIAA1549	1.64e-04	165	74	4	e2aebb2fe197151e019371b8960f76f0c2386f08
ToppCell	renal_cortex_nuclei-CKD+DKD_normotensive-Mesenchymal-glomerular_mesenchymal_cell-Mesangial_Cell\|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group	CACNA1A COL12A1 LAMA2 KIAA1549	1.64e-04	165	74	4	b087771499aeb31cc4a338d2d0a9392a4ec1ac45
ToppCell	renal_cortex_nuclei-CKD+DKD_normotensive-Mesenchymal-glomerular_mesenchymal_cell-Mesangial_Cell-mesangial_typical-aged\|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group	CACNA1A COL12A1 LAMA2 KIAA1549	1.64e-04	165	74	4	d8f8b088fd28a6b9dbd6b51bcaee42000e963321
ToppCell	TCGA-Ovary-Primary_Tumor-Ovarian_Carcinoma-Serous_Cystadenocarcinoma-5\|TCGA-Ovary / Sample_Type by Project: Shred V9	RNF123 ARID1B MTR HNRNPU	1.68e-04	166	74	4	32d2eaf8a5d03881bf74d680825af2d5110b082d
ToppCell	moderate-Myeloid-Mast_cell\|Myeloid / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls	HOXB6 PIK3C2B TRO KIAA1549	1.68e-04	166	74	4	c3835b424c63bf11a4e2c47635dc3787fc4a637a
ToppCell	Healthy_donor-HSPC\|World / disease group, cell group and cell class (v2)	HOXA4 LDLRAD2 TRO KDF1	1.72e-04	167	74	4	70630ebdfee8171d625811844f8a7c94736d101e
ToppCell	facs-Skin-Anagen-24m-Epithelial-bulge_keratinocyte\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HOXB6 PTPRS PABPC4 SCX	1.72e-04	167	74	4	78909f685ccd1321064eb0887caf9263e0e54879
ToppCell	facs-Lung-24m-Hematologic-lymphocytic-CD8-positive,_alpha-beta_T_cell\|24m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	EOMES TBX21 BSN LEF1	1.84e-04	170	74	4	282afbbea5c88d973cf44727c473a3615f0f02a3
ToppCell	droplet-Heart-HEART_(ALL_4:4:4:1:1)-30m-Mesenchymal-atrial_cardiomyocyte\|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	GYS1 PABPC4 MTR SCX	1.84e-04	170	74	4	d99f61aa85ea3f775165cb433421e6f1cda4f96b
ToppCell	droplet-Heart-HEART_(ALL_4:4:4:1:1)-30m-Mesenchymal-cardiomyocyte\|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	GYS1 PABPC4 MTR SCX	1.84e-04	170	74	4	615cf9639c66b3fbd984ebe3f345280005d3c38a
ToppCell	renal_medulla_nuclei-Adult_normal_reference-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	COL12A1 LAMA2 LRRC7 FOXD4L5	1.88e-04	171	74	4	5d31fc9b60329d4ae3c77e4ca679359d9314397d
ToppCell	3'-Airway_Nasal-Epithelial-Epithelial_transtional-secretory-club_cell-Club_(non-nasal)\|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	RNF123 TRO WBP2NL PARD3B	1.88e-04	171	74	4	eddc5e05003382603ee49f74b9e2242a43021096
ToppCell	renal_medulla_nuclei-Hypertensive_with+without-CKD-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast-Adaptive_/_Maladaptive_/_Repairing_Fibroblast\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	COL12A1 PTPRS LAMA2 LRRC7	2.06e-04	175	74	4	795a6564d5a75ffd35d39f5274b9e8d28708bbc8
ToppCell	renal_cortex_nuclei-CKD+DKD_normotensive-Mesenchymal-Myocytic_interstitial_cell-Myofibroblast-\|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group	SEMA3C COL12A1 NFATC1 LAMA2	2.10e-04	176	74	4	9bc87cd5cda2372e1bce94c9dfd408eb1dfd8d0c
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Endothelial-lymphatic_endothelial_cell-lymphatic_endothelial_cell_of_renal_cortex-lymphatic_endothelial_cell_of_renal_cortex_prolif\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	SEMA3A SEMA3D CANT1 NPB	2.10e-04	176	74	4	8eb91dcf55d4e3e28a72d447181bf6d2ad891fc6
ToppCell	renal_cortex_nuclei-CKD+DKD_normotensive-Mesenchymal-Myocytic_interstitial_cell-Myofibroblast\|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group	SEMA3C COL12A1 NFATC1 LAMA2	2.10e-04	176	74	4	3f8274a7ab67f9f8a8923193763a5543cfe4defa
ToppCell	3'_v3-blood-Mast-Mast_cell_granulo-myelo\|blood / Manually curated celltypes from each tissue	HOXA4 MAGI2 SEMA3C KIAA1549	2.10e-04	176	74	4	d421b6b8e13894dbcf29548c0a6516c3dee8f9b1
ToppCell	renal_papilla_nuclei-Adult_normal_reference-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast-Adaptive_/_Maladaptive_/_Repairing_Fibroblast\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	SEMA3A BMP5 LAMA2 LRRC7	2.15e-04	177	74	4	9ec7f1e64312d26d434b3312b58386715dbad644
ToppCell	renal_papilla_nuclei-Adult_normal_reference-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	SEMA3A BMP5 LAMA2 LRRC7	2.15e-04	177	74	4	016277dfd59b1793fddaaadc2b3f41622d76ce3a
ToppCell	severe_COVID-19-HSPC\|World / disease group, cell group and cell class (v2)	HOXB6 TRO PARD3B PRR25	2.15e-04	177	74	4	289f6aed6f054b04b01659434d8c8b467d1bf5dd
ToppCell	wk_20-22-Hematologic-Myeloid-aDC_1\|wk_20-22 / Celltypes from embryonic and fetal-stage human lung	FOXD4L4 FOXD4L1 FOXD4L3 FOXD4L6	2.20e-04	178	74	4	fd2bdb4796e86c8cff2d25f0c730ffea21db8787
ToppCell	renal_cortex_nuclei-Hypertensive_with+without-CKD-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast-kidney_interstitial_fibroblast_5\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	BMP5 COL12A1 NFATC4 LAMA2	2.20e-04	178	74	4	78a0c6340001a77f5b2d890b6263f574af2e72da
ToppCell	COVID-19-kidney-REN+Pericyte\|kidney / Disease (COVID-19 only), tissue and cell type	COL12A1 NFATC4 CNTNAP1 LAMA2	2.24e-04	179	74	4	342c1cc4444f51b8dcb30d3adc98285a25669c6e
ToppCell	LPS-IL1RA-Stromal_mesenchymal-Lung_smooth_muscle-MatrixFB_->_Myofibroblast\|LPS-IL1RA / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	MAGI2 SEMA3C PTPRS CNTNAP1	2.24e-04	179	74	4	02c90d8306016365ed811f0c63cfb3ac7b85464c
ToppCell	Thalamus-Neuronal-Excitatory-eN2(Slc17a7_Slc17a6)-Slc17a6\|Thalamus / BrainAtlas - Mouse McCarroll V32	SEMA3A TREH LHX3	2.25e-04	71	74	3	7623b110bc3db0f5b99803c8fbb881ae8846b817
ToppCell	Control-Stromal_mesenchymal-Matrix_Fibroblast-MatrixFB\|Control / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	MAGI2 BMP5 SEMA3D LRRC7	2.29e-04	180	74	4	08ae0f5d95c45feba68ad99788f7af7ff4c979af
ToppCell	kidney_cells-Hypertensive_with+without-CKD-Mesenchymal-glomerular_mesenchymal_cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	CACNA1A COL12A1 NFATC4 LAMA2	2.34e-04	181	74	4	a2058d658f07ab6f0a28d2622f3090b4cde6f763
ToppCell	facs-Brain_Non-Myeloid-Hippocampus-3m-Epithelial-neuronal_stem_cell\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	SEMA3D NPB PTPRS KIAA1549	2.34e-04	181	74	4	4e81ec1580e9acb22c32c465eb46f83d1e9e424e
ToppCell	facs-Brain_Non-Myeloid-Hippocampus-3m-Epithelial\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	SEMA3D NPB PTPRS KIAA1549	2.34e-04	181	74	4	ad30c01290fb98adbd0caed301a584761212c977
ToppCell	Fetal_29-31_weeks-Mesenchymal-myofibroblast_cell-D062\|Fetal_29-31_weeks / Lineage, Cell type, age group and donor	SEMA3C COL12A1 LAMA2 SCX	2.34e-04	181	74	4	d7e04e0ca549eac6d9b1192b6578f9b54943d54f
ToppCell	kidney_cells-Hypertensive_with+without-CKD-Mesenchymal-glomerular_mesenchymal_cell-Mesangial_Cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	CACNA1A COL12A1 NFATC4 LAMA2	2.34e-04	181	74	4	526e858a848470b6d2d5248788004d9735ed3add
ToppCell	facs-Brain_Non-Myeloid-Hippocampus-3m-Epithelial-nan\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	SEMA3D NPB PTPRS KIAA1549	2.34e-04	181	74	4	3a3268a4dff8ffcb79e09f46490e138c96f8d916
ToppCell	lymphoid-NK_cell-TNFRSF18+IL7R+_NK_cell\|World / Lineage, cell class and subclass	EOMES JUNB RBFOX3 TBX21	2.34e-04	181	74	4	0d096d7d557fd2e71b35e41816e11d7e83cd9210
ToppCell	E18.5-samps\|World / Age Group, Lineage, Cell class and subclass	SEMA3A PITPNM2 GYS1 ATP11A	2.39e-04	182	74	4	9649f15858d1ede73e068afc59df3ac367b49687
ToppCell	Children_(3_yrs)-Immune-enucleated_erythrocyte-D032\|Children_(3_yrs) / Lineage, Cell type, age group and donor	MORN1 TRO KIAA1549 CUBN	2.39e-04	182	74	4	3fddadb2ff75013ec6eeb415872667a6bae1da2d
ToppCell	5'-GW_trimst-2-LargeIntestine-Mesenchymal-mesothelial_cell-Mesothelium\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	SEMA3D SEMA3C RBFOX3 CTAGE1	2.44e-04	183	74	4	9d5a363fbe6f0a1668c9d584df65ee1c283349c7
ToppCell	5'-GW_trimst-2-LargeIntestine-Mesenchymal-mesothelial_cell\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	SEMA3D SEMA3C RBFOX3 CTAGE1	2.44e-04	183	74	4	c5caac6ed6c8d67f5c336281d9fd903976509445
ToppCell	PCW_05-06-Mesenchymal-Mesenchymal_myocytic-mes_immature_ASM2_(12)\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	SEMA3C LAMA2 LRRC7 LEF1	2.44e-04	183	74	4	e84539978ab4de42e19186aed00f24bb50cbc21f
ToppCell	LPS_only-Stromal_mesenchymal-Lung_smooth_muscle-MatrixFB_->_Myofibroblast\|LPS_only / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	MAGI2 SEMA3C PTPRS LAMA2	2.44e-04	183	74	4	12daaea821e49bc94a01e2496331e92a80d27339
ToppCell	facs-Liver-Non-hepatocytes-24m-Endothelial-nan\|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	BMP5 SEMA3C LAMA2 LRRC7	2.44e-04	183	74	4	ebe369dc80c4fbf8f4dbe947147f8c47507ffb60
ToppCell	nucseq-Epithelial-Epithelial_Alveolar-AT1-AT1\|nucseq / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	COL12A1 PARD3B ATP11A OTUD7B	2.49e-04	184	74	4	57c792e6e2fedba25d3350ffe649fd74750b579d
ToppCell	renal_medulla_nuclei-Hypertensive_with+without-CKD-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	BMP5 COL12A1 LAMA2 LRRC7	2.49e-04	184	74	4	e061e85c4bb19f49f6451ddd7a9077d7378ee365
ToppCell	facs-Brain_Non-Myeloid-Cerebellum_-18m-Neuronal\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	EOMES CACNA1A RBFOX3 BSN	2.49e-04	184	74	4	7d9bcdaff8cbea4c50ab7db0f8e01f6bbd0ef593
ToppCell	nucseq-Epithelial-Epithelial_Alveolar-AT1\|nucseq / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	COL12A1 PARD3B ATP11A OTUD7B	2.49e-04	184	74	4	d7bd0f0c607bade67c99e9fb3578a570298bf926
ToppCell	5'-Adult-Distal_Rectal-Mesenchymal-fibroblastic-mLN_Stroma_(FMO2+)\|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL12A1 NFATC4 PTPRS LAMA2	2.54e-04	185	74	4	9faa35ceb89ccd2979072286f063687c9f846ce3
ToppCell	COVID-19-Fibroblasts-Adventitial_FB\|COVID-19 / group, cell type (main and fine annotations)	MAGI2 PTPRS LAMA2 PARD3B	2.54e-04	185	74	4	a5aebf2b9b05b550d021272731d68af9a6b1229d
ToppCell	wk_15-18-Epithelial-Distal_epithelial_progenitor-epi-tip_intermediate\|wk_15-18 / Celltypes from embryonic and fetal-stage human lung	PITPNM2 MTR KIAA1549 ATP11A	2.54e-04	185	74	4	636505a3d96f75d951ab42bcf8af6ae07abc732d
ToppCell	facs-Brain_Non-Myeloid-Cerebellum-24m-Neuronal-interneuron\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CACNA1A RBFOX3 CNTNAP1 BSN	2.60e-04	186	74	4	d1d01ce46e62944aa9864eda47e8401b5f0d2bdc
ToppCell	E16.5-samps-Mesenchymal-Myofibroblast\|E16.5-samps / Age Group, Lineage, Cell class and subclass	MAGI2 ENDOD1 LAMA2 LEF1	2.60e-04	186	74	4	e044b3428b7eacfdc72d0f57cdabaa1de04c74cd
ToppCell	facs-Brain_Non-Myeloid-Cortex-24m\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CACNA1A PITPNM2 RBFOX3 BSN	2.60e-04	186	74	4	7278a1a1bf9bb27aeb03852134defb31b62f30d6
ToppCell	kidney_cells-Adult_normal_reference-Mesenchymal-glomerular_mesenchymal_cell-Mesangial_Cell-mesangial_typical\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	CACNA1A COL12A1 NFATC4 LAMA2	2.65e-04	187	74	4	d591a3c216997663ab77710fed0d230ffc37e41a
ToppCell	facs-Brain_Non-Myeloid-Striatum_-18m-Neuronal-nan\|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation	RBFOX3 CNTNAP1 BSN SCX	2.65e-04	187	74	4	ef3c85c01bc3da408ae288b6e3096ad888a12e63
ToppCell	COVID-19-Fibroblasts-Airway_smooth_muscle\|COVID-19 / group, cell type (main and fine annotations)	MAGI2 COL12A1 LAMA2 PARD3B	2.65e-04	187	74	4	464a0c3b92b778911b5f9cd73642e09e3472063a
ToppCell	PCW_07-8.5-Mesenchymal-Mesenchymal_fibroblastic-mes_immature3_(17)\|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung	SEMA3A MAGI2 BMP5 LAMA2	2.65e-04	187	74	4	a9316e2818217ec5feae9cf8816f7249803caee6
ToppCell	kidney_cells-Adult_normal_reference-Mesenchymal-glomerular_mesenchymal_cell-Mesangial_Cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	CACNA1A COL12A1 NFATC4 LAMA2	2.65e-04	187	74	4	d1dc8c9a2c2cd10c640257161a75e7730ec5bb41
ToppCell	kidney_cells-Adult_normal_reference-Mesenchymal-glomerular_mesenchymal_cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	CACNA1A COL12A1 NFATC4 LAMA2	2.65e-04	187	74	4	ac8e092b37e042975e2ee057d3f7c6821e58e8b5
ToppCell	renal_cortex_nuclei-Adult_normal_reference-Mesenchymal-glomerular_mesenchymal_cell-Mesangial_Cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	CACNA1A COL12A1 LAMA2 KIAA1549	2.65e-04	187	74	4	15d6e158562d7d85af3ceaf955439b379c8fce81
ToppCell	renal_cortex_nuclei-Adult_normal_reference-Mesenchymal-glomerular_mesenchymal_cell\|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group	CACNA1A COL12A1 LAMA2 KIAA1549	2.65e-04	187	74	4	f62074b631fd45ad299c69d71b09267b04d656ee
Drug	quebrachitol	ZMIZ2 TBX21 LEF1 HNRNPU	2.17e-06	29	73	4	CID000151108
Disease	cortical surface area measurement	CACNA1A PITPNM2 SEMA3D SEMA3C ARID1B SF3B1 CPSF6 TREH MYT1 HAPLN4 LAMA2 PARD3B ARHGAP27 IDUA PRRC2A	2.11e-07	1345	66	15	EFO_0010736
Disease	Malignant neoplasm of breast	EOMES HOXA4 SEMA3A ARID1B YBX1 HAPLN4 MTR LAMA2 LRRC7 CUBN LEF1 PRRC2A	4.08e-06	1074	66	12	C0006142
Disease	Epileptic encephalopathy	CACNA1A MAGI2 HNRNPU	4.16e-05	30	66	3	C0543888
Disease	Hirschsprung Disease	SEMA3D SEMA3C ARID1B	4.59e-05	31	66	3	C0019569
Disease	tumor necrosis factor ligand superfamily member 6, soluble form measurement	RNF123 BSN	1.03e-04	7	66	2	EFO_0020797
Disease	testosterone measurement	SEMA3A DXO BMP5 SEMA3D ARID1B NFATC1 PLA2G12A GYS1 PABPC4 SEC23IP LEF1	1.13e-04	1275	66	11	EFO_0004908
Disease	cortex volume change measurement	MAGI2 PARD3B	5.08e-04	15	66	2	EFO_0021500
Disease	vision disorder	MAGI2 RBFOX3	5.79e-04	16	66	2	MONDO_0021084
Disease	rheumatoid arthritis	EOMES MORN1 NFATC1 MYT1 HAPLN4 LEF1	5.86e-04	462	66	6	EFO_0000685
Disease	household income	PITPNM2 RNF123 PIK3C2B ZMIZ2 BSN	6.01e-04	304	66	5	EFO_0009695
Disease	Congenital Intestinal Aganglionosis	SEMA3D SEMA3C	6.56e-04	17	66	2	C3661523
Disease	Eczema	DXO PITPNM2 TBX21 ARHGAP27 OTUD7B	6.56e-04	310	66	5	HP_0000964
Disease	HMG CoA reductase inhibitor use measurement	MORN1 HAPLN4 WBP2NL KDF1	8.62e-04	189	66	4	EFO_0009932
Disease	CCL24 measurement	MAGI2 SEMA3C	1.11e-03	22	66	2	EFO_0009418
Disease	Neurodevelopmental Disorders	ARID1B PARD3B HNRNPU	1.20e-03	93	66	3	C1535926
Disease	sphingomyelin 22:1 measurement	CACNA1A PARD3B	1.21e-03	23	66	2	EFO_0010396
Disease	aspartate aminotransferase measurement, serum alanine aminotransferase measurement	B3GAT2 OTUD7B	1.92e-03	29	66	2	EFO_0004735, EFO_0004736
Disease	cholesteryl esters:total lipids ratio, high density lipoprotein cholesterol measurement	DXO CTAGE1 PABPC4 KDF1	2.17e-03	243	66	4	EFO_0004612, EFO_0020944

Protein segments in the cluster

Peptide	Gene	Start	Entry
YYPAHGLARPRGPGS	CACNA1A	2476	O00555
APHGPVYPAPNGARY	EOMES	171	O95936
GYHGPGYRLPDYPRP	CNTNAP1	1051	P78357
DYPRPGRPVPGYRGP	CNTNAP1	1061	P78357
GRPVPGYRGPVYNVT	CNTNAP1	1066	P78357
NVYLPRGFLPYRPPR	CTAGE1	721	Q96RT6
GSYGPPGPQRYPIGI	ARID1B	631	Q8NFD5
RRSGYRLPPPSDPQY	ECD	281	O95905
GRAVYNTFRAAPPPP	RBFOX3	231	A6NFN3
GRYPALPFPASQYIP	KIAA1549	1661	Q9HCM3
QPVYPITGGFRQPYP	LEF1	216	Q9UJU2
RDPPRRPPRNGYGVY	MORN1	16	Q5T089
PYATFPRQCPPGRPY	OTUD7B	726	Q6GQQ9
PAVPQAQGRPPYYTP	PABPC4	411	Q13310
GRPGPRGGSPDQYPY	PARD3B	1176	Q8TEW8
RYGYKPSPPNGCGSP	PLA2G12A	76	Q9BZM1
SYLQFYEGPPGAPRP	LDLRAD2	111	Q5SZI1
YRQPPLDYRQPPGGD	MAGI2	1091	Q86UL8
ELPPTDRYGRPPYRG	LRRC7	1136	Q96NW7
VPGAYPNTAPGRRPY	FOXD4L4	246	Q8WXT5
VPGAYPNTAPGRRPY	FOXD4L3	246	Q6VB84
VPLGPTGLYRYPAPS	BSN	2251	Q9UPA5
YPLSPPQRTPAGIRY	CANT1	91	Q8WVQ1
PVYSAFRAPRPAPGG	ENDOD1	76	O94919
SGGIGYPYPRAPVFP	HNRNPU	746	Q00839
YPYPRAPVFPGRGSY	HNRNPU	751	Q00839
GPVSQGLSPLPRPYY	NFATC1	716	O95644
AGPEQYRELRPGSPY	LHX3	301	Q9UBR4
YRELRPGSPYGVPPS	LHX3	306	Q9UBR4
GFFRPKGVSPNYPRP	LAMA2	396	P24043
PPPAASRYGQTPGRE	PRR25	161	Q96S07
PPFSVPRYQRYPLGD	PITPNM2	781	Q9BZ72
ALRYYSPPPTNGPGP	DXO	66	O77932
RGPGPFSPPVRYRTF	PTPRS	1016	Q13332
PPQVPPRTYASRYGN	PIK3C2B	281	O00750
LRHYPAPYGPGPGQD	HOXB6	36	P17509
IKSPGYPGNYPPGRD	CUBN	601	O60494
TDPYGRPPPYDRGDY	CPSF6	381	Q16630
PAPGPVLQYRVVYSP	COL12A1	1956	Q99715
PRPYFSPYAVGRGGA	B3GAT2	36	Q9NPZ5
GARKGYPASPNGYPR	BMP5	111	P22003
RGVPPGPGLVYVTRY	IDUA	461	P35475
RPNGLYPNYLNPRTG	MAN1A2	371	O60476
PGAYPNTAPGRRPYA	FOXD4L1	246	Q9NU39
VYCYRAPGAPDPAPG	HAPLN4	361	Q86UW8
GPQPGYPARPSARNK	EMILIN2	31	Q9BXX0
AQGYRYPRPASVPPS	GYS1	631	P13807
PYGYRGGASPGRPPQ	HOXA4	101	Q00056
YQGRIPYPRPGTCPG	SEMA3C	366	Q99985
PAPGPTNKVPRGYNY	LRRC56	201	Q8IYG6
SFLPRPFPSDPYGGR	NFATC4	781	Q14934
VPGAYPNTAPGRCPY	FOXD4L5	246	Q5VV16
VPGAYPNTAPGRRPY	FOXD4L6	246	Q3SYB3
LRYKGIRPAPGYPSQ	MTR	1166	Q99707
EPGGRPFYLPAQYVR	ARHGAP27	51	Q6ZUM4
YRYPTPDGPSRFPRV	PRRC2A	271	P48634
VGPGYRDRSYDPPCP	NOL3	96	O60936
PQPGYNPYRHTPGSS	SEC23IP	176	Q9Y6Y8
WVPYQGRVPYPRPGT	SEMA3A	366	Q14563
IARKLRPYGAPGYPA	KDF1	361	Q8NAX2
PYARRSQPYRGAEPP	NPB	51	Q8NG41
YDGRIPYPRPGTCPS	SEMA3D	386	O95025
REPPPGAEAYIPQRY	ATP11A	31	P98196
QGTYRLRYAPPLPPS	ZCCHC2	1156	Q9C0B9
PYGRRPQYSNPPVQG	YBX1	201	P67809
RPPPRQGYPEGYYSS	SEC16A	1231	O15027
DYGYRVPLFQGPLPP	TRO	6	Q12816
SGPNPYARNRPPFGQ	TFG	376	Q92734
GYKVLPPPAGYVPIR	SF3B1	411	O75533
YPVAGYRPLQDPPSA	RNF123	256	Q5XPI4
SYPRLPRGQGAYRPG	RNF25	431	Q96BH1
PPVGYRASPVRYGAP	WBP2NL	206	Q6ICG8
RASPVRYGAPPLGYG	WBP2NL	211	Q6ICG8
PNGGRVYYLQRSQPP	TREH	211	O43280
YYLGLARRPPATRPG	nan	116	Q7L0L9
YAGQRLPQHGYPGPP	ZMIZ2	241	Q8NF64
LRPAPPGRYLYPEVS	SCX	6	Q7RTU7
APPSRFLGAYAYPPR	TBX21	66	Q9UL17
PDPRAGLYPGPREDY	TBX21	111	Q9UL17
TTPTPPGQYFYPRGG	JUNB	101	P17275
PYGSYRPNVAPATPR	MYT1	556	Q01538