Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctiontau protein binding

STUB1 MAP1A BRSK2 BRSK1

1.09e-0546604GO:0048156
GeneOntologyBiologicalProcesschromatin organization

SOX1 CENPW PIK3CA EPC1 CBX7 KDM2B CHD3 LSM11 CHD4 RERE TEX15 ZNF518A

8.56e-068966012GO:0006325
GeneOntologyBiologicalProcessbranching involved in prostate gland morphogenesis

HOXA13 SFRP1 HOXD13

1.04e-0515603GO:0060442
GeneOntologyBiologicalProcessmicrotubule cytoskeleton organization involved in establishment of planar polarity

BRSK2 BRSK1

2.49e-053602GO:0090176
GeneOntologyBiologicalProcessprotein-DNA complex organization

SOX1 CENPW PIK3CA EPC1 CBX7 KDM2B CHD3 LSM11 CHD4 RERE TEX15 ZNF518A

2.53e-059996012GO:0071824
GeneOntologyBiologicalProcessnegative regulation of DNA-templated transcription

SOX1 SOX3 LIMS1 SFRP1 SOX21 ANKRD1 EPC1 CBX7 KDM2B CHD3 SOX14 CHD4 RERE SCML4

3.69e-0513996014GO:0045892
GeneOntologyBiologicalProcessnegative regulation of RNA biosynthetic process

SOX1 SOX3 LIMS1 SFRP1 SOX21 ANKRD1 EPC1 CBX7 KDM2B CHD3 SOX14 CHD4 RERE SCML4

4.12e-0514136014GO:1902679
GeneOntologyBiologicalProcessmale genitalia development

HOXA13 HOXD13 TEX15

5.80e-0526603GO:0030539
GeneOntologyBiologicalProcessembryonic hindgut morphogenesis

HOXA13 HOXD13

8.27e-055602GO:0048619
GeneOntologyBiologicalProcessprostate gland epithelium morphogenesis

HOXA13 SFRP1 HOXD13

1.20e-0433603GO:0060740
GeneOntologyBiologicalProcessregulation of branching involved in prostate gland morphogenesis

SFRP1 HOXD13

1.24e-046602GO:0060687
GeneOntologyBiologicalProcessprostate gland morphogenesis

HOXA13 SFRP1 HOXD13

1.31e-0434603GO:0060512
GeneOntologyBiologicalProcessgland morphogenesis

HOXA13 LIMS1 SFRP1 PDGFA HOXD13

1.68e-04178605GO:0022612
GeneOntologyBiologicalProcessprostate glandular acinus morphogenesis

SFRP1 HOXD13

1.73e-047602GO:0060526
GeneOntologyBiologicalProcessprostate epithelial cord arborization involved in prostate glandular acinus morphogenesis

SFRP1 HOXD13

1.73e-047602GO:0060527
GeneOntologyBiologicalProcessgland development

SOX3 HOXA13 LIMS1 SFRP1 PDGFA HOXD13 PIK3CA CBX7

2.03e-04558608GO:0048732
GeneOntologyBiologicalProcessestablishment of planar polarity

SFRP1 BRSK2 BRSK1

2.85e-0444603GO:0001736
GeneOntologyBiologicalProcesshindgut morphogenesis

HOXA13 HOXD13

2.96e-049602GO:0007442
GeneOntologyBiologicalProcessestablishment of tissue polarity

SFRP1 BRSK2 BRSK1

3.04e-0445603GO:0007164
GeneOntologyBiologicalProcesshindgut development

HOXA13 HOXD13

3.69e-0410602GO:0061525
GeneOntologyBiologicalProcessnegative regulation of fibroblast apoptotic process

SFRP1 PIK3CA

3.69e-0410602GO:2000270
GeneOntologyBiologicalProcesscell fate specification

SOX1 HOXA13 CHD3 CHD4

4.54e-04123604GO:0001708
GeneOntologyBiologicalProcessgenitalia development

HOXA13 HOXD13 TEX15

5.22e-0454603GO:0048806
GeneOntologyBiologicalProcessprostate glandular acinus development

SFRP1 HOXD13

5.39e-0412602GO:0060525
GeneOntologyBiologicalProcessregulation of synaptic vesicle clustering

BRSK2 BRSK1

5.39e-0412602GO:2000807
GeneOntologyBiologicalProcessdigestive tract morphogenesis

HOXA13 SFRP1 HOXD13

6.78e-0459603GO:0048546
MousePhenoectrodactyly

HOXA13 HOXD13 MBD4

1.32e-067483MP:0005230
MousePhenoembryonic lethality before implantation, complete penetrance

LIMS1 POLR2B EIF5B EXOC1 CHD4 TAF1D

6.43e-05203486MP:0011094
MousePhenoabnormal hallux morphology

HOXA13 HOXD13

1.15e-045482MP:0009049
MousePhenoembryonic lethality before implantation

LIMS1 POLR2B EIF5B EXOC1 CHD4 TAF1D

1.69e-04242486MP:0006204
DomainSOXp

SOX1 SOX3 SOX21 SOX14

4.80e-105604PF12336
DomainSOX_fam

SOX1 SOX3 SOX21 SOX14

4.80e-105604IPR022097
DomainHMG_box_dom

SOX1 SOX3 SOX21 CHD3 SOX14 CHD4

6.06e-0865606IPR009071
Domain-

SOX1 SOX3 SOX21 CHD3 SOX14

8.88e-07556051.10.30.10
DomainHMG_box

SOX1 SOX3 SOX21 SOX14

2.50e-0553604PF00505
DomainHMG_BOX_2

SOX1 SOX3 SOX21 SOX14

2.70e-0554604PS50118
DomainHMG

SOX1 SOX3 SOX21 SOX14

2.70e-0554604SM00398
DomainCHDCT2

CHD3 CHD4

3.04e-053602PF08074
DomainCHDNT

CHD3 CHD4

3.04e-053602PF08073
DomainDUF1086

CHD3 CHD4

3.04e-053602IPR009462
DomainDUF1087

CHD3 CHD4

3.04e-053602IPR009463
DomainCHD_N

CHD3 CHD4

3.04e-053602IPR012958
DomainCHD_C2

CHD3 CHD4

3.04e-053602IPR012957
DomainDUF1087

CHD3 CHD4

3.04e-053602PF06465
DomainDUF1086

CHD3 CHD4

3.04e-053602PF06461
DomainDUF1087

CHD3 CHD4

3.04e-053602SM01147
DomainDUF1086

CHD3 CHD4

3.04e-053602SM01146
DomainHoxA13_N

HOXA13 HOXD13

6.06e-054602PF12284
DomainMLK1/MLK2/MLK4

MAP3K9 MAP3K21

6.06e-054602IPR016231
DomainHoxA13_N

HOXA13 HOXD13

6.06e-054602IPR022067
DomainMAP3K10

MAP3K9 MAP3K21

6.06e-054602IPR015785
DomainChromo_domain

CBX7 CHD3 CHD4

6.08e-0524603IPR023780
DomainChromo

CBX7 CHD3 CHD4

7.77e-0526603PF00385
DomainCHROMO_1

CBX7 CHD3 CHD4

9.75e-0528603PS00598
DomainCHROMO_2

CBX7 CHD3 CHD4

9.75e-0528603PS50013
DomainChromodomain-like

CBX7 CHD3 CHD4

1.46e-0432603IPR016197
DomainChromo/shadow_dom

CBX7 CHD3 CHD4

1.61e-0433603IPR000953
DomainCHROMO

CBX7 CHD3 CHD4

1.61e-0433603SM00298
DomainChromodomain_CS

CBX7 CHD3

1.50e-0318602IPR023779
DomainPI3/4_kinase_cat_dom

PI4K2B PIK3CA

1.50e-0318602IPR000403
DomainPI3_PI4_kinase

PI4K2B PIK3CA

1.50e-0318602PF00454
DomainPI3_4_KINASE_3

PI4K2B PIK3CA

1.50e-0318602PS50290
DomainPI3_4_KINASE_1

PI4K2B PIK3CA

1.50e-0318602PS00915
DomainPI3_4_KINASE_2

PI4K2B PIK3CA

1.50e-0318602PS00916
DomainZnf_PHD-finger

KDM2B CHD3 CHD4

2.10e-0379603IPR019787
DomainGABAA/Glycine_rcpt

GABRD GABRR2

2.46e-0323602IPR006028
DomainPHD

KDM2B CHD3 CHD4

2.94e-0389603SM00249
DomainZnf_PHD

KDM2B CHD3 CHD4

3.13e-0391603IPR001965
DomainZF_PHD_2

KDM2B CHD3 CHD4

3.54e-0395603PS50016
DomainZF_PHD_1

KDM2B CHD3 CHD4

3.64e-0396603PS01359
DomainSNF2_N

CHD3 CHD4

4.73e-0332602IPR000330
DomainSNF2_N

CHD3 CHD4

4.73e-0332602PF00176
DomainDNA/RNA_helicase_DEAH_CS

CHD3 CHD4

5.64e-0335602IPR002464
Pubmed

Twenty pairs of sox: extent, homology, and nomenclature of the mouse and human sox transcription factor gene families.

SOX1 SOX3 SOX21 SOX14

5.65e-091360412194848
Pubmed

Spatio-temporal expression of Sox genes in murine palatogenesis.

SOX1 SOX3 SOX21 SOX14

1.87e-081760427241892
Pubmed

Expression of Sox genes in tooth development.

SOX1 SOX3 SOX21 SOX14

2.40e-081860426864488
Pubmed

Jade-1S phosphorylation induced by CK1α contributes to cell cycle progression.

MAP1A POLR2B EIF5B CHD3 CHD4

4.60e-085660526919559
Pubmed

Perivascular neurons instruct 3D vascular lattice formation via neurovascular contact.

CARTPT PIEZO2 NTS

1.70e-07760338733989
Pubmed

Roles of tau protein in health and disease.

STUB1 MAP1A BRSK2 BRSK1

6.98e-074060428386764
Pubmed

Phylogeny of the SOX family of developmental transcription factors based on sequence and structural indicators.

SOX1 SOX3 SOX14

1.06e-061260311071752
Pubmed

Seven new members of the Sox gene family expressed during mouse development.

SOX1 SOX3 SOX14

1.38e-06136038441686
Pubmed

Molecular analysis of a major antigenic region of the 240-kD protein of Mi-2 autoantigen.

CHD3 CHD4

2.93e-0626027560064
Pubmed

Distinct reward processing by subregions of the nucleus accumbens.

CARTPT NTS

2.93e-06260236753418
Pubmed

Appendage expression driven by the Hoxd Global Control Region is an ancient gnathostome feature.

HOXA13 HOXD13

2.93e-06260221765002
Pubmed

Gene dosage-dependent effects of the Hoxa-13 and Hoxd-13 mutations on morphogenesis of the terminal parts of the digestive and urogenital tracts.

HOXA13 HOXD13

2.93e-0626029428414
Pubmed

Hoxa-13 and Hoxd-13 play a crucial role in the patterning of the limb autopod.

HOXA13 HOXD13

2.93e-0626028898214
Pubmed

The isolation and high-resolution chromosomal mapping of human SOX14 and SOX21; two members of the SOX gene family related to SOX1, SOX2, and SOX3.

SOX21 SOX14

2.93e-06260210441749
Pubmed

Of fingers, toes and penises.

HOXA13 HOXD13

2.93e-0626029363887
Pubmed

Severe digital abnormalities in a patient heterozygous for both a novel missense mutation in HOXD13 and a polyalanine tract expansion in HOXA13.

HOXA13 HOXD13

2.93e-06260212414828
Pubmed

The major dermatomyositis-specific Mi-2 autoantigen is a presumed helicase involved in transcriptional activation.

CHD3 CHD4

2.93e-0626027575689
Pubmed

SAD: a presynaptic kinase associated with synaptic vesicles and the active zone cytomatrix that regulates neurotransmitter release.

BRSK2 BRSK1

2.93e-06260216630837
Pubmed

Mouse Chd4-NURD is required for neonatal spermatogonia survival and normal gonad development.

CHD3 CHD4

2.93e-06260235568926
Pubmed

Two forms of the major antigenic protein of the dermatomyositis-specific Mi-2 autoantigen.

CHD3 CHD4

2.93e-0626028843877
Pubmed

Investigating the regulation of brain-specific kinases 1 and 2 by phosphorylation.

BRSK2 BRSK1

2.93e-06260218339622
Pubmed

SOX3 is an X-linked gene related to SRY.

SOX3 SOX21

2.93e-0626028111369
Pubmed

Isozyme-Specific Role of SAD-A in Neuronal Migration During Development of Cerebral Cortex.

BRSK2 BRSK1

2.93e-06260230307479
Pubmed

Geminin is required for Hox gene regulation to pattern the developing limb.

SOX1 HOXA13 HOXD13

3.26e-061760332450229
Pubmed

Competitive binding of E3 ligases TRIM26 and WWP2 controls SOX2 in glioblastoma.

SOX1 GALE SOX21 MAP1A EIF5B CHD3 SOX14 BRSK1 RPL6

4.37e-0673260934732716
Pubmed

Proteolysis of methylated SOX2 protein is regulated by L3MBTL3 and CRL4DCAF5 ubiquitin ligase.

SOX1 SOX3 SOX21

4.64e-061960330442713
Pubmed

Identification and functional characterization of transcriptional activators in human cells.

SOX21 HOXD13 EPC1 KDM2B RBM20 RPL6 ZNF518A

5.59e-0639860735016035
Pubmed

The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6→ Tbr2→ Tbr1.

EPC1 KDM2B CHD3 CHD4 MBD4

7.86e-0615760530186101
Pubmed

Genetic and Proteomic Interrogation of Lower Confidence Candidate Genes Reveals Signaling Networks in β-Catenin-Active Cancers.

HOXA13 USP10 GALE STUB1 PIK3CA POLR2B EIF5B KDM2B CHD4 RPL35 RPL6

8.23e-061247601127684187
Pubmed

The chemokine Cxcl14 regulates interneuron differentiation in layer I of the somatosensory cortex.

NDNF CXCL14

8.77e-06360239058591
Pubmed

Distinct SoxB1 networks are required for naïve and primed pluripotency.

SOX1 SOX3

8.77e-06360229256862
Pubmed

Spectrum of KIT/PDGFRA/BRAF mutations and Phosphatidylinositol-3-Kinase pathway gene alterations in gastrointestinal stromal tumors (GIST).

PDGFA PIK3CA

8.77e-06360221906875
Pubmed

Synapses of amphids defective (SAD-A) kinase promotes glucose-stimulated insulin secretion through activation of p21-activated kinase (PAK1) in pancreatic β-Cells.

BRSK2 BRSK1

8.77e-06360222669945
Pubmed

Persistence of the cell-cycle checkpoint kinase Wee1 in SadA- and SadB-deficient neurons disrupts neuronal polarity.

BRSK2 BRSK1

8.77e-06360220026642
Pubmed

Replication of loci influencing ages at menarche and menopause in Hispanic women: the Women's Health Initiative SHARe Study.

CENPW BRSK1

8.77e-06360222131368
Pubmed

Hoxd13 and Hoxa13 directly control the expression of the EphA7 Ephrin tyrosine kinase receptor in developing limbs.

HOXA13 HOXD13

8.77e-06360216314414
Pubmed

Microtubule stabilization specifies initial neuronal polarization.

BRSK2 BRSK1

8.77e-06360218268107
Pubmed

The chromatin-remodeling enzyme CHD3 plays a role in embryonic viability but is dispensable for early vascular development.

CHD3 CHD4

8.77e-06360232658897
Pubmed

Removal of immunoglobulin-like domains from titin's spring segment alters titin splicing in mouse skeletal muscle and causes myopathy.

ANKRD1 RBM20

8.77e-06360224470489
Pubmed

FBXO42 facilitates Notch signaling activation and global chromatin relaxation by promoting K63-linked polyubiquitination of RBPJ.

HOXA13 STUB1 CHD3 CHD4 RPL6

1.65e-0518360536129980
Pubmed

Characterization of the CHD family of proteins.

CHD3 CHD4

1.75e-0546029326634
Pubmed

Developmental expression of the mouse Evx-2 gene: relationship with the evolution of the HOM/Hox complex.

HOXA13 HOXD13

1.75e-0546027579515
Pubmed

Tuberous sclerosis complex proteins control axon formation.

BRSK2 BRSK1

1.75e-05460218794346
Pubmed

Comparative expression of the mouse Sox1, Sox2 and Sox3 genes from pre-gastrulation to early somite stages.

SOX1 SOX3

1.75e-05460210446282
Pubmed

Frequent concomitant epigenetic silencing of SOX1 and secreted frizzled-related proteins (SFRPs) in human hepatocellular carcinoma.

SOX1 SFRP1

1.75e-05460223215838
Pubmed

Hoxa-13 gene mutation results in abnormal seminal vesicle and prostate development.

HOXA13 HOXD13

1.75e-05460210210434
Pubmed

PINCH in the cellular stress response to tau-hyperphosphorylation.

LIMS1 STUB1

1.75e-05460223554879
Pubmed

NAB2 represses transcription by interacting with the CHD4 subunit of the nucleosome remodeling and deacetylase (NuRD) complex.

CHD3 CHD4

1.75e-05460216574654
Pubmed

Further complexity of the human SOX gene family revealed by the combined use of highly degenerate primers and nested PCR.

SOX21 SOX14

1.75e-0546029827568
Pubmed

SOX21-AS1 activated by STAT6 promotes pancreatic cancer progression via up-regulation of SOX21.

USP10 SOX21

1.75e-05460236335356
Pubmed

SOX1 links the function of neural patterning and Notch signalling in the ventral spinal cord during the neuron-glial fate switch.

SOX1 SOX3 SOX21

2.12e-053160319723505
Pubmed

A High-Density Map for Navigating the Human Polycomb Complexome.

MYCBP2 CBX7 KDM2B CHD3 CHD4 RERE ZNF518A

2.28e-0549560727705803
Pubmed

Multiplexed kinase interactome profiling quantifies cellular network activity and plasticity.

LIMS1 BRSK2 MAP3K9 EIF5B CHD4 BRSK1 MAP3K21 FKBP11 MRPL1

2.47e-0591060936736316
Pubmed

Human SAD1 kinase is involved in UV-induced DNA damage checkpoint function.

BRSK2 BRSK1

2.92e-05560215150265
Pubmed

Fbxl10/Kdm2b recruits polycomb repressive complex 1 to CpG islands and regulates H2A ubiquitylation.

CBX7 KDM2B

2.92e-05560223395003
Pubmed

C-terminal phosphorylation of LKB1 is not required for regulation of AMP-activated protein kinase, BRSK1, BRSK2, or cell cycle arrest.

BRSK2 BRSK1

2.92e-05560218854318
Pubmed

Fork stalling and template switching as a mechanism for polyalanine tract expansion affecting the DYC mutant of HOXD13, a new murine model of synpolydactyly.

HOXA13 HOXD13

2.92e-05560219546318
Pubmed

Regulation of number and size of digits by posterior Hox genes: a dose-dependent mechanism with potential evolutionary implications.

HOXA13 HOXD13

2.92e-0556029391088
Pubmed

Altered Hox expression and increased cell death distinguish Hypodactyly from Hoxa13 null mice.

HOXA13 HOXD13

2.92e-05560210470645
Pubmed

A group 13 homeodomain is neither necessary nor sufficient for posterior prevalence in the mouse limb.

HOXA13 HOXD13

2.92e-05560216806154
Pubmed

A gene mapping to the sex-determining region of the mouse Y chromosome is a member of a novel family of embryonically expressed genes.

SOX1 SOX3

2.92e-0556022374589
Pubmed

The mouse Hoxd13(spdh) mutation, a polyalanine expansion similar to human type II synpolydactyly (SPD), disrupts the function but not the expression of other Hoxd genes.

HOXA13 HOXD13

2.92e-05560211543619
Pubmed

SAD kinases control the maturation of nerve terminals in the mammalian peripheral and central nervous systems.

BRSK2 BRSK1

4.37e-05660224395778
Pubmed

Chromatin remodeling proteins interact with pericentrin to regulate centrosome integrity.

CHD3 CHD4

4.37e-05660217626165
Pubmed

LKB1 and AMPK regulate synaptic remodeling in old age.

BRSK2 BRSK1

4.37e-05660225086610
Pubmed

Evolution of Hoxa11 regulation in vertebrates is linked to the pentadactyl state.

HOXA13 HOXD13

4.37e-05660227706137
Pubmed

P42 Ebp1 regulates the proteasomal degradation of the p85 regulatory subunit of PI3K by recruiting a chaperone-E3 ligase complex HSP70/CHIP.

STUB1 PIK3CA

4.37e-05660224651434
Pubmed

Mammalian SAD kinases are required for neuronal polarization.

BRSK2 BRSK1

4.37e-05660215705853
Pubmed

Temporal and spatial dissection of Shh signaling in genital tubercle development.

HOXA13 HOXD13

4.37e-05660219906863
Pubmed

Context-dependent enhancer function revealed by targeted inter-TAD relocation.

HOXA13 HOXD13

4.37e-05660235715427
Pubmed

Phosphorylation of microtubule-associated protein tau by AMPK-related kinases.

BRSK2 BRSK1

4.37e-05660221985311
Pubmed

Proteomic analysis of HIV-1 Gag interacting partners using proximity-dependent biotinylation.

EIF5B CHD3 RPL35

5.34e-054260326362536
Pubmed

Large-scale characterization of HeLa cell nuclear phosphoproteins.

USP10 STUB1 MYCBP2 EIF5B KDM2B CHD3 CHD4 RERE

5.35e-0577460815302935
Pubmed

Identification of Novel Proteins Co-Purifying with Cockayne Syndrome Group B (CSB) Reveals Potential Roles for CSB in RNA Metabolism and Chromatin Dynamics.

VPS13C POLR2B CHD4

5.73e-054360326030138
Pubmed

Interplay of SOX and POU factors in regulation of the Nestin gene in neural primordial cells.

SOX1 SOX3

6.11e-05760215456859
Pubmed

Selective Recognition of H3.1K36 Dimethylation/H4K16 Acetylation Facilitates the Regulation of All-trans-retinoic Acid (ATRA)-responsive Genes by Putative Chromatin Reader ZMYND8.

POLR2B CHD4

6.11e-05760226655721
Pubmed

Hox genes regulate digit patterning by controlling the wavelength of a Turing-type mechanism.

HOXA13 HOXD13

6.11e-05760223239739
Pubmed

Conservation and divergence of regulatory strategies at Hox Loci and the origin of tetrapod digits.

HOXA13 HOXD13

6.11e-05760224465181
Pubmed

Pairing SOX off: with partners in the regulation of embryonic development.

SOX1 SOX3

6.11e-05760210729834
Pubmed

Analysis of Cyp26b1/Rarg compound-null mice reveals two genetically separable effects of retinoic acid on limb outgrowth.

HOXA13 HOXD13

6.11e-05760220043900
Pubmed

Evidence that the SRY protein is encoded by a single exon on the human Y chromosome.

SOX1 SOX3

6.11e-0576028244390
Pubmed

iNOS-Derived Nitric Oxide Induces Integrin-Linked Kinase Endocytic Lysosome-Mediated Degradation in the Vascular Endothelium.

LIMS1 STUB1

6.11e-05760228546219
Pubmed

Dbx2 regulation in limbs suggests interTAD sharing of enhancers.

HOXA13 HOXD13

8.14e-05860233497014
Pubmed

Similarities and differences in the regulation of HoxD genes during chick and mouse limb development.

HOXA13 HOXD13

8.14e-05860230475793
Pubmed

Stabilization of integrin-linked kinase by the Hsp90-CHIP axis impacts cellular force generation, migration and the fibrotic response.

LIMS1 STUB1

8.14e-05860223612611
Pubmed

A conserved family of genes related to the testis determining gene, SRY.

SOX3 SOX21

8.14e-0586021614875
Pubmed

Mammalian chromodomain proteins: their role in genome organisation and expression.

CHD3 CHD4

8.14e-05860210655032
Pubmed

Proliferation of murine midbrain neural stem cells depends upon an endogenous sonic hedgehog (Shh) source.

SOX1 SOX3

8.14e-05860223776550
Pubmed

Spatio-temporal expression pattern of the NatB complex, Nat5/Mdm20 in the developing mouse brain: implications for co-operative versus non-co-operative actions of Mdm20 and Nat5.

SOX1 SOX3

8.14e-05860222101279
Pubmed

A role for HOX13 proteins in the regulatory switch between TADs at the HoxD locus.

HOXA13 HOXD13

8.14e-05860227198226
Pubmed

Functional Equivalence of the SOX2 and SOX3 Transcription Factors in the Developing Mouse Brain and Testes.

SOX1 SOX3

8.14e-05860228515211
Pubmed

Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1-CoREST interactome during embryonic stem cell differentiation.

MYCBP2 KDM2B CHD3 CHD4 RERE RBM20

8.42e-0541860634709266
Pubmed

Cell cycle-dependent phosphorylation regulates RECQL4 pathway choice and ubiquitination in DNA double-strand break repair.

STUB1 MAP1A ICE2 POLR2B EIF5B CHD3 CHD4 RPL35 MRPL1 RPL6

8.81e-051335601029229926
Pubmed

Proximity-dependent Mapping of the Androgen Receptor Identifies Kruppel-like Factor 4 as a Functional Partner.

EPC1 KDM2B CHD3 CHD4 RERE

1.01e-0426860533640491
Pubmed

"Self-regulation," a new facet of Hox genes' function.

HOXA13 HOXD13

1.05e-04960223913823
Pubmed

Mesenchymal stem cells produce Wnt isoforms and TGF-beta1 that mediate proliferation and procollagen expression by lung fibroblasts.

SFRP1 PDGFA

1.05e-04960219734317
Pubmed

Matching SOX: partner proteins and co-factors of the SOX family of transcriptional regulators.

SOX1 SOX14

1.05e-04960212100890
Pubmed

Congenital hydrocephalus and abnormal subcommissural organ development in Sox3 transgenic mice.

SOX3 SOX14

1.05e-04960222291885
Pubmed

Group 13 HOX proteins interact with the MH2 domain of R-Smads and modulate Smad transcriptional activation functions independent of HOX DNA-binding capability.

HOXA13 HOXD13

1.05e-04960216087734
Pubmed

Sox2 requirement in sonic hedgehog-associated medulloblastoma.

SOX1 SOX3

1.05e-04960223596255
InteractionSOX7 interactions

SOX21 HOXD13 KDM2B RBM20 ZNF518A

4.52e-0682605int:SOX7
GeneFamilySRY-boxes

SOX1 SOX3 SOX21 SOX14

8.61e-0819414757
GeneFamilyPHD finger proteins|NuRD complex

CHD3 CHD4

3.26e-04124121305
GeneFamilyGamma-aminobutyric acid type A receptor subunits

GABRD GABRR2

8.37e-0419412563
GeneFamilyPHD finger proteins

KDM2B CHD3 CHD4

1.11e-039041388
GeneFamilyMitogen-activated protein kinase kinase kinases|RAF family

MAP3K9 MAP3K21

1.34e-0324412654
GeneFamilyL ribosomal proteins

RPL35 RPL6

5.96e-0351412729
GeneFamilyHOXL subclass homeoboxes

HOXA13 HOXD13

6.19e-0352412518
CoexpressionHAMAI_APOPTOSIS_VIA_TRAIL_UP

PI4K2B PIEZO2 MYCBP2 PIK3CA VPS13C ICE2 EIF5B EXOC1 MBD4

1.73e-05656609M18979
CoexpressionMEISSNER_BRAIN_HCP_WITH_H3K4ME3_AND_H3K27ME3

SOX1 SOX3 CARTPT NDNF PDE3A SFRP1 SOX21 CXCL14 MARVELD3 MAP3K21 BFSP1

2.82e-0510746011M1941
CoexpressionGOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN

NDNF CENPW SOX21 MAP1A PDGFA CBX7 FMN2 CHD3 LSM11 CHD4 BRSK1

3.56e-0511026011M2369
CoexpressionGOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN

NDNF CENPW SOX21 MAP1A PDGFA CBX7 FMN2 CHD3 LSM11 CHD4 BRSK1

4.27e-0511246011MM1070
CoexpressionTABULA_MURIS_SENIS_LUNG_INTERMEDIATE_MONOCYTE_AGEING

MYCBP2 EIF5B CHD4 RPL35 RERE FCHO2 RPL6

4.72e-05419607MM3768
CoexpressionAtlasDevelopingLowerUrinaryTract_P1_bladder_B_emap-30374_k-means-cluster#5_top-relative-expression-ranked_1000

CARTPT HOXA13 HOXD13 CXCL14

5.87e-0724604gudmap_developingLowerUrinaryTract_P1_bladder_B_1000_k5
CoexpressionAtlasDevelopingLowerUrinaryTract_e13.5_bladder neck-urethr epithel_emap-30875_top-relative-expression-ranked_500

HOXA13 SOX21 PDGFA HOXD13 FAM161A MAP3K9 CXCL14 MARVELD3

1.64e-05401608gudmap_developingLowerUrinaryTract_e13.5_bladder neck-urethr epithel_500
CoexpressionAtlasfacebase_RNAseq_e8.5_NeuroEpith_hindBrain_2500_K1

NDNF SFRP1 CENPW ICE2 POLR2B BRSK2 EIF5B KDM2B FKBP11 MRPL1 RPL6 ZNF518A TAF1D

1.75e-0511646013facebase_RNAseq_e8.5_NeuroEpith_hindBrain_2500_K1
CoexpressionAtlasfacebase_RNAseq_e8.5_NeuroEpith_hindBrain_2500

NDNF SFRP1 CENPW ICE2 POLR2B BRSK2 MAP3K9 EIF5B KDM2B FKBP11 MRPL1 RPL6 ZNF518A TAF1D

1.76e-0513476014facebase_RNAseq_e8.5_NeuroEpith_hindBrain_2500
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-5517_k-means-cluster#4_top-relative-expression-ranked_500

HOXA13 HOXD13 FMN2 CXCL14

3.22e-0564604gudmap_developingLowerUrinaryTract_e14.5_ urogenital sinus_500_k4
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_k-means-cluster#4_top-relative-expression-ranked_1000

NDNF HOXD13 FMN2 CXCL14 RBM20

5.97e-05147605DevelopingLowerUrinaryTract_e14.5_ urethra_emap-30902_k4_1000
CoexpressionAtlasDevelopingLowerUrinaryTract_P1_bladder_J_emap-30374_k-means-cluster#4_top-relative-expression-ranked_1000

CARTPT HOXA13 HOXD13 CXCL14

1.23e-0490604gudmap_developingLowerUrinaryTract_P1_bladder_J_1000_k4
ToppCellfacs-Brain_Non-Myeloid-Striatum-3m-Neuronal-neuron|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

CARTPT ANKRD1 MARVELD3 TEX15 RBM20

2.98e-06166605548d0d6c0ffd564036ddba78620734220ebb73d7
ToppCellfacs-Brain_Non-Myeloid-Striatum-3m-Neuronal-nan|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

CARTPT ANKRD1 MARVELD3 TEX15 RBM20

2.98e-0616660580e164a89d22098cabe4a99a78283ba69ea0561e
ToppCellChildren_(3_yrs)-Immune-enucleated_erythrocyte-D046|Children_(3_yrs) / Lineage, Cell type, age group and donor

SFRP1 ANKRD1 NTS MARVELD3 RPL35

4.55e-06181605c029cecbd7182c70b9893d8c86f334c16291a0db
ToppCell5'-Adult-Appendix-Endothelial-lymphatic_endothelial-LEC6_(ADAMTS4+)|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract

NDNF PIEZO2 ANKRD1 NTS CDC42EP2

4.68e-06182605fd786c88826ad3d5cc5c3d80f8e392d6be1b5267
ToppCellPericytes-Myositis-ILD_01|World / lung cells shred on cell class, cell subclass, sample id

PDE3A SFRP1 MAP1A LSM11 RBM20

4.80e-061836054617b18da8d699a44e4c47980197b1e7eb951470
ToppCell5'-Adult-Appendix-Endothelial-lymphatic_endothelial|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract

NDNF PIEZO2 ANKRD1 NTS CDC42EP2

4.93e-06184605453295362888c9a59d0e73c7a5b15914c50ff591
ToppCelldroplet-Bladder-nan|Bladder / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MYCBP2 EIF5B CHD3 CHD4 TAF1D

5.33e-06187605663991a8afe652e92363b64bcbd68c14d0307f0e
ToppCellControl-Fibroblasts-Pathological_FB|Control / group, cell type (main and fine annotations)

SFRP1 MAP1A CXCL14 RPL35 RPL6

5.33e-06187605b7280b8baa0fba9c2b4bff660c240ed96f6ff9b7
ToppCelldroplet-Lung-18m-Mesenchymal-myofibroblast-tracheobronchial_smooth_muscle_cell-smooth_muscle_cell_of_trachea_l39|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

NDNF MAP1A ANKRD1 BRSK2 RBM20

5.33e-06187605218c9b4f28499389c43005d9626af2ac01066027
ToppCellControl-Lymphocyte-T_NK-CD4_TCM|Control / Disease, Lineage and Cell Type

USP10 RPL35 FKBP11 RPL6 SCML4

5.33e-061876051de80f40f753b31aed1fac9f3ff8a2ee6c755eec
ToppCelldroplet-Lung-18m-Mesenchymal-myofibroblast-tracheobronchial_smooth_muscle_cell|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

NDNF MAP1A ANKRD1 BRSK2 RBM20

5.33e-06187605c7ac4b328efc2ebb72f71154661914193ff402ca
ToppCelldroplet-Lung-nan-18m-Mesenchymal-Airway_Smooth_Muscle|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

NDNF MAP1A ANKRD1 BRSK2 RBM20

5.47e-0618860561f010c165826b434ca3d27553d4c9e13d2c0c51
ToppCelldroplet-Lung-nan-18m-Mesenchymal-bronchial_smooth_muscle_cell|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

NDNF MAP1A ANKRD1 BRSK2 RBM20

5.47e-061886057553ef7de3575af4cf34704b405b551c1af8eb83
ToppCelldroplet-Limb_Muscle-nan-3m-Mesenchymal-skeletal_muscle_satellite_cell|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

PI4K2B ANKRD1 RPL35 RBM20 RPL6

5.91e-061916054fcbc214853e115608b3be7b35639247ae41c9dc
ToppCellAnterior_Cingulate_gyrus_(CgG)-Neuronal-Inh_GABAergic-i_Gaba_1-GABA_L1_LAMP5-Inh_L1-4_LAMP5_DUSP4_(Lamp5_Rosehip)|Anterior_Cingulate_gyrus_(CgG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 GABRD PDE3A SFRP1 CXCL14

6.06e-0619260563d1b3efe93e5ff939278ebe40bacb38218ea09b
ToppCellLAM-Endothelial-LymEndo|LAM / Condition, Lineage and Cell class

GABRD SFRP1 PIEZO2 NTS CDC42EP2

6.22e-0619360568eadc91c2d89edd2412e86dfe134dd7c0ef6ee9
ToppCellAnterior_Cingulate_gyrus_(CgG)-Neuronal-Inh_GABAergic-i_Gaba_1|Anterior_Cingulate_gyrus_(CgG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 GABRD NDNF SFRP1 CXCL14

6.38e-0619460552aebb0b563e2c2058e7f0554ae870e47692b163
ToppCellAnterior_Cingulate_gyrus_(CgG)-Neuronal-Inh_GABAergic-i_Gaba_1-GABA_L1_LAMP5|Anterior_Cingulate_gyrus_(CgG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 GABRD NDNF SFRP1 CXCL14

6.38e-06194605bd06e2b8d8c06cddf2e4f58849b86e09013acae1
ToppCelldroplet-Pancreas-PANCREAS-30m-Epithelial-pancreatic_B_cell|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MYCBP2 VPS13C FMN2 CHD4 RERE

6.54e-061956053e519cffa6144a62b06124642a14c9ff39b76554
ToppCelldroplet-Pancreas-PANCREAS-30m-Epithelial-pancreatic_B_cell|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MYCBP2 VPS13C FMN2 CHD4 RERE

6.54e-061956057796ea9247f4c63762f0de8490fed08b9717fa23
ToppCellASK440-Endothelial-Lymphatic|Endothelial / Donor, Lineage and Cell class of Lung cells from Dropseq

LIMS1 PIEZO2 NTS RPL35 RPL6

6.70e-06196605833723c8753922374cd7730907f1596899dd5734
ToppCell15-Distal|15 / Age, Tissue, Lineage and Cell class

NDNF PIEZO2 CXCL14 RPL35 RPL6

6.70e-0619660506389b8fb0cd744326ba0523483f742215b6e57b
ToppCellLPS_IL1RA-Epithelial_alveolar-AT_1-2_Progenitor-AT1_Progenitor|LPS_IL1RA / Treatment groups by lineage, cell group, cell type

NDNF PDGFA ANKRD1 RPL35 RPL6

7.04e-06198605c30a517ca5f803273f1517e27995082ec4e07c76
ToppCellFetal_brain-organoid_Tanaka_cellReport-GW10-Macroglial-Astrocyte|GW10 / Sample Type, Dataset, Time_group, and Cell type.

SOX1 SOX3 SFRP1 SOX21 CDC42EP2

7.39e-0620060598a994692440cb4f505b050276f0c8022c814a21
ToppCellFetal_brain-organoid_Tanaka_cellReport-GW10-Macroglial|GW10 / Sample Type, Dataset, Time_group, and Cell type.

SOX1 SOX3 SFRP1 SOX21 CDC42EP2

7.39e-06200605ef222dc4a205d670172dae74990bdb952ac92e5b
ToppCellfacs-Brain_Non-Myeloid-Hippocampus-24m-Macroglial|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

HOXA13 MAP1A PDGFA CDC42EP2

3.62e-05138604c1a46fbf1beffa12c3d1b78361e0613e2e9e2d13
ToppCellfacs-Brain_Non-Myeloid-Hippocampus-24m-Macroglial-nan|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

HOXA13 MAP1A PDGFA CDC42EP2

4.04e-0514260467d4ff3483ae34f77c3325aa0fbd3462ca19ade4
ToppCellEpithelial-B_(AT1-AT2-progenitors)|World / shred on cell class and cell subclass (v4)

PI4K2B NDNF PDGFA TEX15

4.51e-051466044511916904c1fac252cb68e871b782207f8137b3
ToppCell(0)_Normal/No_Treatment-(4)_COL2.3+_osteoblasts|World / Stress and Cell class

PI4K2B GALE PDGFA FKBP11

4.63e-0514760487c24843cb0e87ad42e725d08423131a5d2d25a3
ToppCellfacs-Brain_Non-Myeloid-Hippocampus-24m-Macroglial-oligodendrocyte|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

HOXA13 MAP1A PDGFA CDC42EP2

5.01e-05150604afd651c654e715414eff64cf3a37378d057a56a2
ToppCell10x5'-GI_large-bowel-Lymphocytic_T_CD4-T_CD4/CD8|GI_large-bowel / Manually curated celltypes from each tissue

MAP1A BRSK2 CXCL14 BFSP1

5.27e-0515260495944864ce7539ff8de028f5700694931338f3ff
ToppCellPrimary_Motor_Cortex_(M1)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_2-Inh_L3-6_VIP_KCTD13|Primary_Motor_Cortex_(M1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 PDE3A NTS CXCL14

6.75e-05162604fd9c443a04445811f921f1b3ecd9b49febcda675
ToppCellChildren_(3_yrs)-Mesenchymal-vascular_smooth_muscle_cell-D032|Children_(3_yrs) / Lineage, Cell type, age group and donor

PDE3A BRSK2 BRSK1 RBM20

6.91e-051636048f24cef152f5965727bbeee116bd26c75cbba82a
ToppCellfacs-Lung-nan-3m-Epithelial-type_I_pneumocyte|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

GABRD NDNF ANKRD1 FKBP11

7.42e-0516660411b0ae82b3068ef91715dbdd49fe8e9791b4a480
ToppCellfacs-Lung-nan-3m-Epithelial-Alveolar_Epithelial_Type_1|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

GABRD NDNF ANKRD1 FKBP11

7.42e-05166604fcc1aec31ebd39432d4cb284dc8fadf34e3c566a
ToppCellprimary_visual_cortex-Neuronal-GABAergic_neuron-Vip-Vip_Arhgap36_Hmcn1|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SOX1 SOX3 PDE3A SCML4

7.59e-051676041c1b4722c6c0eff85a9b32ca7b4e281caebf63b0
ToppCellmetastatic_Lymph_Node-Myeloid_cells-Activated_DCs|Myeloid_cells / Location, Cell class and cell subclass

SFRP1 PIEZO2 KDM2B CHD3

8.32e-05171604ce290930385cac35dbd21a5e91cf0f93cf3e99f8
ToppCellEndothelial-B-IPF_04|World / lung cells shred on cell class, cell subclass, sample id

GABRD PIEZO2 ANKRD1 NTS

8.51e-05172604d4e98ff9c7cbc95457e1d71fa60f151a2f178dae
ToppCellNS-critical-d_16-33-Epithelial-Basal|d_16-33 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

NTS RPL35 RPL6 BFSP1

8.70e-051736043d3afc9ab234eaabf5b9bff455406231cd54ded6
ToppCellPrimary_Motor_Cortex_(M1)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_1-Inh_L1_SST_CXCL14|Primary_Motor_Cortex_(M1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

NDNF PDE3A CXCL14 SCML4

8.70e-05173604af85fb9f6e26a044ca4d23e5872039b1a7b73b1b
ToppCellsaliva-Severe-critical_progression_d12-22_with-steroid-Myeloid-Macrophage-macrophage,_alveolar-Macro_c3-EREG|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)

GABRD CENPW STUB1 VPS13C

8.90e-05174604feed99acd868db61f045e666dbfdcaed91ca1488
ToppCellControl-Lymphoid-Tregs|Lymphoid / Condition, Lineage and Cell class

LIMS1 CDC42EP2 CBX7 CREBL2

8.90e-05174604522a6d5d9809271c63b85f62ac6ec52a6e3c355e
ToppCelldroplet-Heart-nan-3m|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

PDE3A VPS13C FCHO2 RBM20

9.30e-05176604749b47eac5436fa34e0d243ffbc6f1897f4e431e
ToppCellPrimary_Motor_Cortex_(M1)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_2-Inh_L2-5_VIP_TOX2|Primary_Motor_Cortex_(M1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 PDE3A SFRP1 CXCL14

9.51e-0517760485e270b4a0b0da77ffe5987a099e827c02a4adf3
ToppCelldroplet-Lung-21m-Hematologic-lymphocytic-CD4-positive,_alpha-beta_T_cell-CD4-positive,_alpha-beta_T_cell_l5|21m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

GABRR2 CHD3 RPL35 RPL6

9.51e-05177604f069197d39aacf7ad63be13133a6f3fd35d429ac
ToppCellfacs-Limb_Muscle-ForelimbandHindlimb-24m-Mesenchymal-nan|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SFRP1 ANKRD1 CXCL14 RPL6

9.51e-05177604ea2c2d2d7ffd34780882299229ff8614fdd7c79c
ToppCellfacs-Limb_Muscle-ForelimbandHindlimb-24m-Mesenchymal|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SFRP1 ANKRD1 CXCL14 RPL6

9.51e-0517760463b5ebbe505f22091bc7b0db818e01fae5d92bb7
ToppCellPBMC-Convalescent-Hematopoietic-Platelet|Convalescent / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)

PDE3A LIMS1 MAP1A PDGFA

9.72e-05178604f5d83ad082e31d5601890d245b9fb4f9ef6a062b
ToppCellPBMC-Convalescent-Hematopoietic-Platelet-Platelet|Convalescent / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)

PDE3A LIMS1 MAP1A PDGFA

9.72e-05178604a2a8fc14f492a4695e6991a357b6626145f1bf7f
ToppCellPBMC-Convalescent-Hematopoietic-Platelet-Platelet-plt_3|Convalescent / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)

PDE3A LIMS1 MAP1A PDGFA

9.72e-05178604a16857da9f2907c176213a326112a1b4cbd0e628
ToppCellPBMC-Convalescent-Hematopoietic-Platelet-Platelet|Convalescent / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

PDE3A LIMS1 MAP1A PDGFA

9.93e-05179604510927794bbd21814eba75286e0801eb1fd2e8a6
ToppCellPBMC-Convalescent-Hematopoietic|Convalescent / Location, Disease Group, Cell group, Cell class (2021.03.09)

PDE3A LIMS1 MAP1A PDGFA

9.93e-051796043b1616e974ea7792ff5c37da3b0281f28edfbb56
ToppCellPBMC-Convalescent-Hematopoietic|Convalescent / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

PDE3A LIMS1 MAP1A PDGFA

9.93e-0517960435271a4396a533f6d960ce55d171a32d9d2fd1a4
ToppCellPBMC-Convalescent-Hematopoietic-Platelet|Convalescent / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

PDE3A LIMS1 MAP1A PDGFA

9.93e-05179604906a5ebbbac660b6fd498ced09d0ada40a3e64af
ToppCellCOVID-19_Convalescent-Hematopoietic_Mega-Platelet|COVID-19_Convalescent / Disease group, lineage and cell class

PDE3A LIMS1 MAP1A PDGFA

1.01e-04180604deed53167504c91220b35a63366ed7d8f02a5254
ToppCellCOVID-19_Convalescent-Hematopoietic_Mega|COVID-19_Convalescent / Disease group, lineage and cell class

PDE3A LIMS1 MAP1A PDGFA

1.01e-0418060417323d382ae322e388e230fdad13e3464ea73e8e
ToppCellMid-temporal_gyrus_(MTG)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_1-Inh_L1_SST_CXCL14|Mid-temporal_gyrus_(MTG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

NDNF PDE3A CXCL14 SCML4

1.01e-04180604b6efdb4d319ef6f87f559acd974e5a71b06a2322
ToppCelldroplet-Lung-3m-Hematologic-lymphocytic-CD4-positive,_alpha-beta_T_cell-CD4-positive,_alpha-beta_T_cell_l5|3m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

CHD3 RPL35 RPL6 SCML4

1.04e-04181604941b1a9460c7bc87a1ab0aea21286318a1593e7a
ToppCellSomatosensory_Cortex_(S1)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_2-Inh_L1-3_VIP_ZNF322P1|Somatosensory_Cortex_(S1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

PDE3A HOXD13 NTS CXCL14

1.04e-04181604062f00736eed96e4f4327615d093558dd7d82b20
ToppCellMid-temporal_gyrus_(MTG)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_2-Inh_L2-5_VIP_TOX2|Mid-temporal_gyrus_(MTG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 PDE3A SFRP1 CXCL14

1.04e-0418160435bcdcd2651149692e5b150e887c0f450c81d2d4
ToppCellBLOOD-unannotated|BLOOD / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)

USP10 CXCL14 RPL35 FKBP11

1.04e-041816043a5c0c701fc2c078e1504bbf88ae708546cc74a3
ToppCellSomatosensory_Cortex_(S1)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_2-Inh_L2-5_VIP_TOX2|Somatosensory_Cortex_(S1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 PDE3A SFRP1 CXCL14

1.04e-04181604154d5e586cab25155c6d06dfe6ae01203b88e0fb
ToppCellprimary_auditory_cortex_(A1C)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_2-Inh_L2-5_VIP_TOX2|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 PDE3A SFRP1 CXCL14

1.06e-041826043d7a8d2ee2137b098248597058974ef5ae09c19e
ToppCellremission-Platelet|remission / disease stage, cell group and cell class

PDE3A LIMS1 MAP1A PDGFA

1.06e-0418260465e2798aacd670cbc3a8c8e9d1a2f7768513bb70
ToppCellCOPD-Epithelial-ATI|World / Disease state, Lineage and Cell class

NDNF ZCWPW2 PDGFA ANKRD1

1.06e-04182604e95d946a43b1579af199900bb0e3eacbb9d65300
ToppCelldroplet-Lung-3m-Hematologic-lymphocytic-CD4-positive,_alpha-beta_T_cell|3m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

CHD3 RPL35 RPL6 SCML4

1.08e-0418360427219ad7ecdeeb9e55e39772992e14f6c497d020
ToppCelldroplet-Lung-18m-Hematologic-lymphocytic-CD8-positive,_alpha-beta_T_cell-CD8-positive,_alpha-beta_T_cell_l5|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

CHD3 RPL35 RPL6 SCML4

1.08e-04183604159d9ca6a2b4512f28064d9227c83e343503ac14
ToppCelldroplet-Lung-3m-Epithelial-airway_epithelial-neuroendocrine_cell|3m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

CARTPT PIEZO2 SOX21 MARVELD3

1.10e-04184604e0e5a553fb8c0947679634396d20c2ca8455b932
ToppCellcontrol-Others|control / Cohort 2 (Rhapsody WB + PBMC) with disease condition, lineage and cell classs

PDE3A LIMS1 MAP1A PDGFA

1.10e-04184604a63b39fcc570b554cf10e8e47c2c1e079034768f
ToppCelldroplet-Marrow-nan-3m|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MYCBP2 VPS13C CHD4 FCHO2

1.10e-041846041154a5ad7b8512272b7476f949ddac350910bfb7
ToppCelldroplet-Lung-3m-Epithelial-airway_epithelial-neuroendocrine_cell-neuroendocrine|3m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

CARTPT PIEZO2 SOX21 MARVELD3

1.10e-04184604c3b848e1438a84b3fac8a4e40f3db478cc84d970
ToppCelldroplet-Limb_Muscle-Pre-Sort-18m-Mesenchymal-skeletal_muscle_satellite_cell|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

PI4K2B ANKRD1 RPL35 RPL6

1.13e-041856045414a66169c39d09a67b1050aad5e61f46b3749a
ToppCellPrimary_Motor_Cortex_(M1)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_1|Primary_Motor_Cortex_(M1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

NDNF PDE3A CXCL14 SCML4

1.13e-04185604027020754dbf71b0034791f9a34ae795e3b85f81
ToppCellAnterior_Cingulate_gyrus_(CgG)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_2-Inh_L2-5_VIP_TOX2|Anterior_Cingulate_gyrus_(CgG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 PDE3A SFRP1 CXCL14

1.13e-04185604caf4f57f2db9ff72a652c8573e16e7ab180ffc05
ToppCellMid-temporal_gyrus_(MTG)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_1|Mid-temporal_gyrus_(MTG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

NDNF PDE3A CXCL14 SCML4

1.13e-0418560408fad1e3c3cc5f1c3eb6629a49c094b628e75a92
ToppCellPND01-03-samps-Epithelial|PND01-03-samps / Age Group, Lineage, Cell class and subclass

PI4K2B NDNF PDGFA TEX15

1.13e-041856042b854df79cfe2cb4d2f9c2938a066e0aa3649325
ToppCelldroplet-Marrow-nan-3m-Myeloid|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MYCBP2 VPS13C CHD4 FCHO2

1.13e-041856047adfa929930cfa795cbfbd9f1a0b439e08aa765d
ToppCellcritical-Myeloid-pDC|Myeloid / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

MAP1A RPL35 FKBP11 RPL6

1.13e-041856044a5d1d0a757f1f4fdb911be96ed90b52182c25f0
ToppCellEndothelial-B-Donor_07|World / lung cells shred on cell class, cell subclass, sample id

SFRP1 PIEZO2 NTS CDC42EP2

1.13e-04185604133c9dc64d564dae4aeeeca22f386aa3f13fa980
ToppCelldroplet-Lung-1m-Hematologic-lymphocytic-CD4-positive,_alpha-beta_T_cell-CD4-positive,_alpha-beta_T_cell_l5|1m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

CHD3 RPL35 RPL6 SCML4

1.13e-041856046e08e329dfe78818f3df255476492c8b4b0b16e6
ToppCelldroplet-Lung-1m-Hematologic-lymphocytic-CD4-positive,_alpha-beta_T_cell|1m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

CHD3 RPL35 RPL6 SCML4

1.15e-04186604b999b9bed8357083997cacf5dc64530ddedc056e
ToppCelldroplet-Limb_Muscle-nan-21m-Mesenchymal-skeletal_muscle_satellite_cell|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

PI4K2B ANKRD1 RPL35 RPL6

1.15e-041866041cbb1a1c4f0f6078e9c7b4e0dc93d6b6de7e57db
ToppCellPCW_10-12-Epithelial-Epithelial_proliferating-epi_proliferating1_(8)|PCW_10-12 / Celltypes from embryonic and fetal-stage human lung

PDGFA MAP3K9 MARVELD3 MAP3K21

1.17e-04187604c2940aec30b3c2c113f6a65126dc6f1969cf301e
ToppCellfacs-Trachea-3m-Mesenchymal-myofibroblast-tracheobronchial_smooth_muscle_cell-smooth_muscle_cell_of_trachea_l20-23|3m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

ANKRD1 RPL35 RBM20 SCML4

1.17e-0418760469b47f00598d647e2a99427ebddf42c339428e47
ToppCellPND01-03-samps-Epithelial-Alveolar_epithelial|PND01-03-samps / Age Group, Lineage, Cell class and subclass

PI4K2B NDNF PDGFA TEX15

1.17e-0418760423fe3cdd6cc9b067086a8392d104186d300298ea
ToppCellremission-Platelet|World / disease stage, cell group and cell class

PDE3A LIMS1 MAP1A PDGFA

1.20e-04188604fa69f20ef6b8ce620ba342f0984d40ddf259bc3f
ToppCelldroplet-Tongue-nan|Tongue / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

EIF5B CHD4 RPL35 TAF1D

1.20e-04188604d62cc37e86b7b186e53aeb7f421c4e5ee28f23bd
ToppCellCOPD-Stromal-SMC|Stromal / Disease state, Lineage and Cell class

PDE3A PDGFA BRSK2 RBM20

1.20e-041886049ffef4b01d0ddd6913c9ed6be79aeaaabd5e41ed
ToppCelldroplet-Heart-HEART-1m-Neuronal-cardiac_neuron|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

CARTPT SFRP1 PDGFA BRSK2

1.20e-04188604921a2c9212a0f2a00fd72c594d80924f27e8b9b7
ToppCellFetal_brain-organoid_Tanaka_cellReport-GW09-Neuronal-Neuron|GW09 / Sample Type, Dataset, Time_group, and Cell type.

MYCBP2 KDM2B MARVELD3 BRSK1

1.22e-041896043717d1148e26ac78a26aea0ca1dbfbb9d3668877
ToppCellprimary_auditory_cortex_(A1C)-Neuronal-Inh_GABAergic-i_Gaba_1-GABA_L1_LAMP5-Inh_L1-4_LAMP5_DUSP4_(Lamp5_Rosehip)|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 GABRD SFRP1 CXCL14

1.22e-04189604979b7fa947538aa7ca4a219263da2575869a2caa
ToppCellfacs-Mammary_Gland-Mammary_Gland-18m-Epithelial|Mammary_Gland / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SFRP1 CBX7 CXCL14 FCHO2

1.25e-0419060492456f6f7eced6e4c4371f495254a65d061c8d0b
ToppCellLeuk-UTI-Lymphocyte-T_NK-CD4_TCM|Leuk-UTI / Disease, Lineage and Cell Type

RPL35 FKBP11 RPL6 SCML4

1.25e-041906045f8d606d2f465ddeae7451835f84b3f25a151d2a
ToppCellMegakaryocytic-erythropoietic-Megakaryo-cells|World / Lineage, cell class and subclass

PDE3A LIMS1 MAP1A PDGFA

1.25e-0419060472b61a12ccea506272ce9cef9051aa2612e6ce57
ToppCellPND10-Epithelial-Epithelial_Alveolar|PND10 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

PI4K2B NDNF PDGFA TEX15

1.25e-04190604dc20d323cee2741e39fba597263d6418ae0eadaf
ToppCellPND10-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar|PND10 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

PI4K2B NDNF PDGFA TEX15

1.25e-04190604ec1bd4929dc82bec2c983a31ece4e3aa82f3a2ab
ToppCelldroplet-Limb_Muscle-MUSCLE-30m-Mesenchymal-nan|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SFRP1 VPS13C ANKRD1 CXCL14

1.27e-041916047d1595e616f6f111fc2f5bc1b179c5d67d624cc9
ToppCellprimary_auditory_cortex_(A1C)-Neuronal-Inh_GABAergic-i_Gaba_1-GABA_L1_LAMP5|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 NDNF SFRP1 CXCL14

1.30e-04192604f6ec683b2133b3095a1fcc06ca8605cf38f774b5
ToppCell367C-Endothelial_cells-Endothelial-F_(Lymphatics)|Endothelial_cells / Donor, Lineage, Cell class and subclass (all cells)

LIMS1 SFRP1 PIEZO2 NTS

1.30e-041926045e709c0714e8eba27e03a6def0544256bedb3ced
ToppCelldroplet-Limb_Muscle-MUSCLE-30m-Mesenchymal-mesenchymal_stem_cell|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SFRP1 MYCBP2 VPS13C CXCL14

1.30e-0419260411088878043a6ff95ba1970361256a82e434b80a
Diseaseserine/threonine-protein kinase BRSK2 measurement

BRSK2 BRSK1

1.22e-053602EFO_0803063
DiseaseChromosome 1p36 Deletion Syndrome

GABRD RERE

4.05e-055602C1842870
Diseasehypospadias (biomarker_via_orthology)

HOXA13 HOXD13

6.07e-056602DOID:10892 (biomarker_via_orthology)
Diseasemiddle temporal gyrus volume measurement, Alzheimer's disease biomarker measurement

MYCBP2 MAP3K21

3.13e-0413602EFO_0006514, EFO_0010316
DiseaseLiver carcinoma

GABRD HOXA13 SFRP1 CENPW PIK3CA CXCL14

5.70e-04507606C2239176
Diseasecolorectal carcinoma (is_implicated_in)

PIK3CA MBD4

9.15e-0422602DOID:0080199 (is_implicated_in)
Diseasecolon adenocarcinoma (is_implicated_in)

PIK3CA CHD4

1.28e-0326602DOID:234 (is_implicated_in)
Diseaseleiomyoma (is_marker_for)

SFRP1 PDGFA

1.49e-0328602DOID:127 (is_marker_for)
DiseasePolydactyly

HOXA13 HOXD13 PIK3CA

1.76e-03117603C0152427

Protein segments in the cluster

PeptideGeneStartEntry
LIRPKRKYEKKPKVL

EPC1

331

Q9H2F5
IQLKKRKKYRKTKVP

ANKRD1

91

Q15327
RKKYRKTKVPVVKEP

ANKRD1

96

Q15327
KRKTFALPGIIKKEK

FCHO2

286

Q0JRZ9
KAPRGFLKRVFKRKK

CENPW

16

Q5EE01
SKRYKELQLKKPGKA

RBM20

591

Q5T481
RGQSRKKKRKPKVDY

LSM11

321

P83369
VRKTLYKAKVPGRVK

MAP1A

471

P78559
YLVKKGRLTPKEARK

BRSK2

106

Q8IWQ3
PKKKTFKRRKIYCQI

PDE3A

1061

Q14432
GKPKAKYLVRLKGNK

NDNF

411

Q8TB73
DYRKKQKAKVKVSRP

GABRD

336

O14764
RKGPKIRYSDVKKLE

CXCL14

41

O95715
KKKKFGYKRERVPFV

PIK3CA

941

P42336
KSRGKKYALEKVPKV

PI4K2B

226

Q8TCG2
KEEVIKRKIPYILKR

NTS

136

P30990
KASGKKIPYKVVARR

GALE

286

Q14376
LYRKANRPKVSKKKL

FKBP11

176

Q9NYL4
LKKPIKRVYKKFDPV

ICE2

631

Q659A1
RKKRKYEKPQELSGR

KDM2B

801

Q8NHM5
PIYLKRGSRKGKKEK

CDC42EP2

6

O14613
KLKRGRPGRKKKKVL

CHD3

346

Q12873
KRKKRDIPDYLCGKI

STUB1

221

Q9UNE7
FGKLYRKVKEKVRSP

BFSP1

441

Q12934
KRGRKPAKIDLKAKL

CREBL2

16

O60519
GRKKRVPYTKLQLKE

HOXD13

276

P35453
IRKKRVRKGKVEYLV

CBX7

16

O95931
KPRKAHKYLRLSRKK

CBX7

141

O95931
YLVKKGRLTPKEARK

BRSK1

121

Q8TDC3
RKVRKPKGKVTILKG

MBD4

226

O95243
AIKGYRKVRKLKEKP

MARVELD3

381

Q96A59
LKKLKSKRVPIYEKK

CARTPT

61

Q16568
KVIKEYPGKEVKKGL

EXOC1

811

Q9NV70
LKYKKKTNRFKARPI

FAM161A

346

Q3B820
GKKLKKVKLRKLERP

CHD4

686

Q14839
RQKKGKSLYKIKPRH

FMN2

1696

Q9NZ56
LCQEKPRVKKRKGKF

MAP3K9

491

P80192
YKKNLDVTKIRKGKP

GABRR2

41

P28476
YKYRPRRKTKTLLKK

SOX3

206

P41225
KKYKPLDLRPKKTRA

RPL35

76

P42766
KYRPRRKPKTLLKKD

SOX21

76

Q9Y651
PKVKKRKGKFKRSRL

MAP3K21

491

Q5TCX8
YKKKKKRRYQPTGRP

TAF1D

91

Q9H5J8
KKRPIYEDKKRKKIP

EIF5B

441

O60841
AKPGVTKEKRIKYAK

POLR2B

326

P30876
RRQSKPYKPKKIIKM

MYCBP2

621

O75592
KKKPPKKKSRYERTD

RERE

76

Q9P2R6
KKCYEKFPLELKKRL

LIMS1

301

P48059
RPRRKTKTLLKKDKY

SOX1

121

O00570
GPIKKKDLKKLVLYL

SFRP1

236

Q8N474
RGRKKRVPYTKVQLK

HOXA13

321

P31271
ELNRLRKKLNKKYPK

MRPL1

206

Q9BYD6
KVAKVEYVRKKPKLK

PDGFA

151

P04085
YFKKKKLRKPRHQEG

RPL6

216

Q02878
KRYPQPRGQKKKKVV

PIEZO2

2386

Q9H5I5
NFVYKDIKPGRKRKK

VPS13C

141

Q709C8
LKLILKRYKIGASRK

ZNF518A

311

Q6AHZ1
QRERKKKKKRPPGYY

USP10

146

Q14694
KPKFRKRKRKAILKC

ZCWPW2

231

Q504Y3
KRKYDKRRKKRAPKA

TEX15

1066

Q9BXT5
IPKKRGRKPGYKIKS

SCML4

41

Q8N228
KYRPRRKPKNLLKKD

SOX14

76

O95416
DLKKPSKKRVKREPY

nan

11

Q8N402