Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctionhelicase activity

DDX27 CHD3 CHD5

3.63e-04158183GO:0004386
GeneOntologyMolecularFunctionATP-dependent chromatin remodeler activity

CHD3 CHD5

5.02e-0437182GO:0140658
GeneOntologyCellularComponentCHD-type complex

CHD3 CHD5

1.17e-0417202GO:0090545
GeneOntologyCellularComponentNuRD complex

CHD3 CHD5

1.17e-0417202GO:0016581
DomainCHDCT2

CHD3 CHD5

3.27e-063202PF08074
DomainCHDNT

CHD3 CHD5

3.27e-063202PF08073
DomainDUF1086

CHD3 CHD5

3.27e-063202IPR009462
DomainDUF1087

CHD3 CHD5

3.27e-063202IPR009463
DomainDUF1087

CHD3 CHD5

3.27e-063202PF06465
DomainDUF1086

CHD3 CHD5

3.27e-063202PF06461
DomainDUF1087

CHD3 CHD5

3.27e-063202SM01147
DomainDUF1086

CHD3 CHD5

3.27e-063202SM01146
DomainCHD_N

CHD3 CHD5

3.27e-063202IPR012958
DomainCHD_C2

CHD3 CHD5

3.27e-063202IPR012957
DomainHelicase_C

DDX27 CHD3 CHD5

1.94e-04107203PF00271
DomainHELICc

DDX27 CHD3 CHD5

1.94e-04107203SM00490
DomainHelicase_C

DDX27 CHD3 CHD5

2.00e-04108203IPR001650
DomainHELICASE_CTER

DDX27 CHD3 CHD5

2.05e-04109203PS51194
DomainHELICASE_ATP_BIND_1

DDX27 CHD3 CHD5

2.05e-04109203PS51192
DomainDEXDc

DDX27 CHD3 CHD5

2.05e-04109203SM00487
DomainHelicase_ATP-bd

DDX27 CHD3 CHD5

2.11e-04110203IPR014001
DomainChromo_domain

CHD3 CHD5

2.96e-0424202IPR023780
DomainChromo

CHD3 CHD5

3.49e-0426202PF00385
DomainCHROMO_2

CHD3 CHD5

4.05e-0428202PS50013
DomainCHROMO_1

CHD3 CHD5

4.05e-0428202PS00598
DomainSNF2_N

CHD3 CHD5

5.30e-0432202PF00176
DomainSNF2_N

CHD3 CHD5

5.30e-0432202IPR000330
DomainChromodomain-like

CHD3 CHD5

5.30e-0432202IPR016197
DomainCHROMO

CHD3 CHD5

5.64e-0433202SM00298
DomainChromo/shadow_dom

CHD3 CHD5

5.64e-0433202IPR000953
DomainDNA/RNA_helicase_DEAH_CS

CHD3 CHD5

6.35e-0435202IPR002464
DomainDEAH_ATP_HELICASE

CHD3 CHD5

7.48e-0438202PS00690
Domain-

CHD3 CHD5

1.56e-03552021.10.30.10
DomainZinc_finger_PHD-type_CS

CHD3 CHD5

2.18e-0365202IPR019786
DomainHMG_box_dom

CHD3 CHD5

2.18e-0365202IPR009071
DomainPHD

CHD3 CHD5

2.88e-0375202PF00628
DomainZnf_PHD-finger

CHD3 CHD5

3.19e-0379202IPR019787
DomainPHD

CHD3 CHD5

4.03e-0389202SM00249
DomainZnf_PHD

CHD3 CHD5

4.21e-0391202IPR001965
DomainZF_PHD_2

CHD3 CHD5

4.58e-0395202PS50016
DomainZF_PHD_1

CHD3 CHD5

4.68e-0396202PS01359
DomainC2

RASA3 RAB11FIP2

8.54e-03131202PF00168
DomainC2

RASA3 RAB11FIP2

9.31e-03137202SM00239
DomainC2

RASA3 RAB11FIP2

9.97e-03142202PS50004
DomainZnf_FYVE_PHD

CHD3 CHD5

1.07e-02147202IPR011011
Domain-

RASA3 RAB11FIP2

1.08e-021482022.60.40.150
DomainC2_dom

RASA3 RAB11FIP2

1.31e-02164202IPR000008
Pubmed

Jade-1S phosphorylation induced by CK1α contributes to cell cycle progression.

DDX27 CHD3 DNTTIP2 FTSJ3

2.86e-085620426919559
Pubmed

Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains.

DDX27 CHD3 DNTTIP2 ZFX PWWP2B FTSJ3

4.07e-0753320630554943
Pubmed

Epilepsy- and intellectual disability-associated CYFIP2 interacts with both actin regulators and RNA-binding proteins in the neonatal mouse forebrain.

PRXL2A ARHGEF1 CHD5 KAZN

1.26e-0614320432560809
Pubmed

The cell proliferation antigen Ki-67 organises heterochromatin.

DDX27 ARHGEF1 CHD3 DNTTIP2 FTSJ3

2.98e-0641020526949251
Pubmed

An expanded Oct4 interaction network: implications for stem cell biology, development, and disease.

UBN2 CHD3 CHD5

1.91e-059120320362542
Pubmed

DLX1 and the NuRD complex cooperate in enhancer decommissioning and transcriptional repression.

CHD3 CHD5

3.28e-051520235695185
Pubmed

A Functional Switch of NuRD Chromatin Remodeling Complex Subunits Regulates Mouse Cortical Development.

CHD3 CHD5

4.25e-051720227806305
Pubmed

The functional interactome of PYHIN immune regulators reveals IFIX is a sensor of viral DNA.

UBN2 DDX27 DNTTIP2 FTSJ3

4.25e-0534920425665578
Pubmed

Combinatorial targeting of a chromatin complex comprising Dot1L, menin and the tyrosine kinase BAZ1B reveals a new therapeutic vulnerability of endocrine therapy-resistant breast cancer.

DDX27 CHD3 DNTTIP2 KAZN FTSJ3

9.68e-0584720535850772
Pubmed

Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing.

UBN2 RASA3 PARD3B CHD3 ANKAR PWWP2B

1.41e-04148920628611215
Pubmed

Identification of the BRD1 interaction network and its impact on mental disorder risk.

CHD3 CHD5

1.85e-043520227142060
Pubmed

Cross-linking mass spectrometry reveals the structural topology of peripheral NuRD subunits relative to the core complex.

CHD3 CHD5

2.18e-043820233283408
Pubmed

Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.

CHD3 DNTTIP2 CHD5 PWWP2B FTSJ3

3.50e-04111620531753913
Pubmed

CHD3 and CHD4 form distinct NuRD complexes with different yet overlapping functionality.

DDX27 CHD3 CHD5 FTSJ3

3.52e-0460520428977666
Pubmed

The in vivo Interaction Landscape of Histones H3.1 and H3.3.

UBN2 CHD3 DNTTIP2 CHD5

3.59e-0460820436089195
Pubmed

BioID-based proteomic analysis of the Bid interactome identifies novel proteins involved in cell-cycle-dependent apoptotic priming.

CHD3 CHD5

4.58e-045520233067418
Pubmed

Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing.

CHD3 CHD5 FTSJ3

4.84e-0427120332433965
InteractionNUP43 interactions

UBN2 DDX27 CHD3 DNTTIP2 ZFX FTSJ3

2.32e-05625206int:NUP43
InteractionRPL31 interactions

DDX27 CHD3 DNTTIP2 ZFX ANKAR FTSJ3

3.73e-05680206int:RPL31
InteractionZNF330 interactions

PBX4 DDX27 CHD3 DNTTIP2 FTSJ3

6.11e-05446205int:ZNF330
InteractionNHLH1 interactions

UBN2 DDX27 FTSJ3

8.69e-0588203int:NHLH1
InteractionADARB1 interactions

DDX27 CHD3 DNTTIP2 CHD5 FTSJ3

9.45e-05489205int:ADARB1
InteractionDNAJC9 interactions

DDX27 ARHGEF1 DNTTIP2 FTSJ3

1.84e-04296204int:DNAJC9
InteractionPNMA8A interactions

DDX27 PWWP2B FTSJ3

2.29e-04122203int:PNMA8A
InteractionCYFIP2 interactions

PRXL2A ARHGEF1 CHD5 KAZN

2.56e-04323204int:CYFIP2
InteractionH2AB3 interactions

DDX27 ZFX FTSJ3

3.15e-04136203int:H2AB3
InteractionSNRNP40 interactions

UBN2 DDX27 CHD3 DNTTIP2 FTSJ3

3.24e-04637205int:SNRNP40
InteractionMAGEB2 interactions

DDX27 CHD3 DNTTIP2 FTSJ3

3.44e-04349204int:MAGEB2
InteractionMKI67 interactions

DDX27 ARHGEF1 CHD3 DNTTIP2 FTSJ3

3.51e-04648205int:MKI67
InteractionANOS1 interactions

DDX27 DNTTIP2 FTSJ3

3.65e-04143203int:ANOS1
CytobandEnsembl 112 genes in cytogenetic band chr10q26

PWWP2B RAB11FIP2

3.64e-03207202chr10q26
CytobandEnsembl 112 genes in cytogenetic band chrXp22

CDKL5 ZFX

5.26e-03250202chrXp22
GeneFamilyPHD finger proteins|NuRD complex

CHD3 CHD5

4.82e-05121621305
GeneFamilyPHD finger proteins

CHD3 CHD5

2.81e-039016288
CoexpressionGSE17974_1.5H_VS_72H_IL4_AND_ANTI_IL12_ACT_CD4_TCELL_UP

RASA3 DDX27 ZFX RAB11FIP2

1.39e-05198204M4247
ToppCellrenal_medulla_nuclei-Hypertensive_with+without-CKD-Epithelial-Intermediate_tubule_epithelial_cell|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group

ADAMTS9 PARD3B KAZN

7.77e-0518820363a4b25a0a6e05f80f1a6dd91b817f3cf49e6b68
ToppCellrenal_cortex_nuclei-Adult_normal_reference-Immune-Lymphocytic_T/NK|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

RASA3 PBX4 ARHGEF1

8.02e-05190203b772a5d281fe016f259ddda80d6f33d949dcac2b
ToppCellrenal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Collecting_tubule_epithelial_cell-kidney_connecting_tubule_epithelial_cell-Connecting_Tubule_Cell|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

ADAMTS9 KAZN RAB11FIP2

8.02e-051902034836ea19308d2a96694f12ab0653b7ce7b101d2f
ToppCellrenal_cortex_nuclei-Adult_normal_reference-Immune-Lymphocytic_T/NK-T_Cell|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

RASA3 PBX4 ARHGEF1

8.14e-05191203326b4541069efedc8ab409f85bb11f77346dda90
ToppCellrenal_cortex_nuclei-Adult_normal_reference-Immune-Lymphocytic_T/NK-T_Cell-|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

RASA3 PBX4 ARHGEF1

8.14e-051912031a2d5fec2bea96da2154b0aed252f1bb35102f6e
ToppCellHSPCs-Ery_prog.|World / Lineage and Cell class

PBX4 DDX27 FTSJ3

8.40e-05193203484c2e0daedc6cb0d50d164add8c1658123a60f9
ToppCell10x_3'_v3-thymus_(10x_3'_v3)-lymphocytic-T_lymphocytic|thymus_(10x_3'_v3) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type

RASA3 PBX4 ARHGEF1

9.06e-05198203db107a5511571384f26e26c6301aef9a9f2423c4
ToppCell356C-Endothelial_cells-Endothelial-A_(Artery)-|Endothelial_cells / Donor, Lineage, Cell class and subclass (all cells)

ADAMTS9 DNTTIP2 FTSJ3

9.33e-05200203fa99901388eec28004bef85d84f0d7d5bd4df4a8
ToppCell356C-Endothelial_cells-Endothelial-A_(Artery)|Endothelial_cells / Donor, Lineage, Cell class and subclass (all cells)

ADAMTS9 DNTTIP2 FTSJ3

9.33e-0520020389eae23195d57f1b23a337ff19c9b8a367e22c96
DiseaseColorectal Carcinoma

CDKL5 PBX4 ARHGEF1 CHD5

9.26e-04702194C0009402
DiseaseNeurodevelopmental Disorders

CDKL5 PARD3B

1.62e-0393192C1535926
Diseasesunburn

PRXL2A RAB11FIP2

1.73e-0396192EFO_0003958
Diseasemacula measurement

ADAMTS9 CHD3

6.50e-03189192EFO_0008375
Diseasetriglyceride measurement, very low density lipoprotein cholesterol measurement

RASA3 PBX4

9.01e-03224192EFO_0004530, EFO_0008317

Protein segments in the cluster

PeptideGeneStartEntry
GDKKSGRNFFRKKVM

ARHGEF1

236

Q92888
EGKKEDKKGKFKFMF

CHD5

1691

Q8TDI0
FDLALRGKKKRKKFM

DDX27

671

Q96GQ7
RAQGRKRFGMKNFKK

RASA3

586

Q14644
EQFKKKLGFKRAMKC

ANKAR

481

Q7Z5J8
KIKKKGFGAMLRFGK

PARD3B

866

Q8TEW8
RKKKKEKMGFGSISR

KAZN

376

Q674X7
FGNKRIRYKKNMGKF

PBX4

261

Q9BYU1
KNGGKYCVGRRMKFK

ADAMTS9

621

Q9P2N4
GKKKRRKNFEAMFKG

CASP5

6

P51878
NAIKGGKKAFKMKRE

CHD3

836

Q12873
GKKAFKMKREAQVKF

CHD3

841

Q12873
LKEKEKQGFFRSMKK

CDKL5

771

O76039
FKLRFNRKKKGMYRK

PWWP2B

551

Q6NUJ5
MGKKGKVGKSRRDKF

FTSJ3

1

Q8IY81
EKKKFYGPQRRKMMF

PRXL2A

136

Q9BRX8
ANAAGKKFRKKKKFR

DNTTIP2

741

Q5QJE6
KKFEMKYGGKPRKHR

UBN2

181

Q6ZU65
RSPFAKLKDKMKGRK

RAB11FIP2

161

Q7L804
KLKDKMKGRKNDGTF

RAB11FIP2

166

Q7L804
ERKQKFLRLMGAGKK

SMAP

36

O00193
GKKFKSRGFLKRHMK

ZFX

431

P17010
KIMKRGKKSYEGKNF

ZNF329

166

Q86UD4