Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctionsingle-stranded DNA binding

YBX1 YBX3

5.04e-03134162GO:0003697
GeneOntologyBiologicalProcesspositive regulation of cytoplasmic translation

YBX1 YBX3

7.62e-0517162GO:2000767
GeneOntologyBiologicalProcessregulation of cytoplasmic translation

YBX1 YBX3

3.70e-0437162GO:2000765
DomainCOLD_SHOCK

YBX1 YBX3

1.31e-056182PS00352
DomainCold-shock_CS

YBX1 YBX3

1.31e-056182IPR019844
DomainCSP

YBX1 YBX3

2.45e-058182SM00357
DomainCold_shock_prot

YBX1 YBX3

2.45e-058182IPR011129
DomainCSD

YBX1 YBX3

2.45e-058182PF00313
DomainCSP_DNA-bd

YBX1 YBX3

2.45e-058182IPR002059
DomainNA-bd_OB-fold

YBX1 YBX3

2.85e-0383182IPR012340
PathwayWP_ADIPOGENESIS

EGR2 BMP3 STAT2

2.65e-04131143M39505
PathwayWP_ADIPOGENESIS_GENES

EGR2 BMP3 STAT2

3.02e-04137143MM15970
Pubmed

Differential distribution of Y-box-binding protein 1 and cold shock domain protein A in developing and adult human brain.

YBX1 YBX3

3.47e-07221224817634
Pubmed

YB-3 substitutes YB-1 in global mRNA binding.

YBX1 YBX3

3.47e-07221231944153
Pubmed

Two human genes isolated by a novel method encode DNA-binding proteins containing a common region of homology.

YBX1 YBX3

1.04e-0632122977358
Pubmed

The Y-box motif mediates redox-dependent transcriptional activation in mouse cells.

YBX1 YBX3

1.04e-0632128530481
Pubmed

Cold shock domain family members YB-1 and MSY4 share essential functions during murine embryogenesis.

YBX1 YBX3

1.04e-06321216954378
Pubmed

Characterization of the gene for dbpA, a family member of the nucleic-acid-binding proteins containing a cold-shock domain.

YBX1 YBX3

2.08e-0642127628487
Pubmed

Phosphorylation of cold shock domain/Y-box proteins by ERK2 and GSK3beta and repression of the human VEGF promoter.

YBX1 YBX3

3.47e-06521216198352
Pubmed

Identification of cooperating oncogenes in E mu-myc transgenic mice by provirus tagging.

BMI1 BMP3

5.20e-0662121904008
Pubmed

Characterization of pal-1, a common proviral insertion site in murine leukemia virus-induced lymphomas of c-myc and Pim-1 transgenic mice.

BMI1 BMP3

7.28e-0672128985317
Pubmed

The linkage map of sheep Chromosome 6 compared with orthologous regions in other species.

CSN1S1 BMP3

9.70e-0682128661727
Pubmed

The mouse poly(C)-binding protein exists in multiple isoforms and interacts with several RNA-binding proteins.

YBX1 YBX3

1.25e-0592128871564
Pubmed

Interaction proteomics analysis of polycomb proteins defines distinct PRC1 complexes in mammalian cells.

YBX1 BMI1 YBX3

4.60e-0511621321282530
Pubmed

Deep sequencing and proteomic analysis of the microRNA-induced silencing complex in human red blood cells.

YBX1 YBX3

1.40e-042921225681748
Pubmed

Characterization of the DOT1L network: implications of diverse roles for DOT1L.

YBX1 YBX3

2.81e-044121220431927
Pubmed

Roquin promotes constitutive mRNA decay via a conserved class of stem-loop recognition motifs.

YBX1 YBX3

3.38e-044521223663784
Pubmed

Interactome analyses revealed that the U1 snRNP machinery overlaps extensively with the RNAP II machinery and contains multiple ALS/SMA-causative proteins.

CSN1S1 YBX1 YBX3

4.13e-0424421329884807
Pubmed

The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation.

YBX1 YBX3

5.06e-045521231640799
Pubmed

IFIT1 is an antiviral protein that recognizes 5'-triphosphate RNA.

YBX1 YBX3

5.62e-045821221642987
InteractionDANCR interactions

YBX1 YBX3

1.90e-0426162int:DANCR
InteractionAGO1 interactions

YBX1 BMI1 YBX3

3.78e-04183163int:AGO1
InteractionCUL1 interactions

CSN1S1 YBX1 SAP130 YBX3 STAT2

4.49e-04876165int:CUL1
InteractionPRKRIP1 interactions

YBX1 BMI1

5.24e-0443162int:PRKRIP1
InteractionNFIC interactions

EGR2 BMI1 SAP130

5.65e-04210163int:NFIC
InteractionH1-1 interactions

YBX1 BMI1 SAP130 YBX3

5.66e-04507164int:H1-1
InteractionTET1 interactions

EGR2 SAP130

5.74e-0445162int:TET1
InteractionLMF1 interactions

CSN1S1 SEZ6

7.37e-0451162int:LMF1
InteractionPABPC4L interactions

YBX1 BMI1

8.26e-0454162int:PABPC4L
InteractionLARP4B interactions

YBX1 BMI1 FASTK

8.33e-04240163int:LARP4B
InteractionCBX8 interactions

YBX1 BMI1 YBX3

9.26e-04249163int:CBX8
InteractionH2AX interactions

YBX1 BMI1 SAP130 YBX3

1.02e-03593164int:H2AX
InteractionMTREX interactions

YBX1 BMI1 YBX3

1.07e-03262163int:MTREX
InteractionMAGOH interactions

YBX1 BMI1 YBX3

1.10e-03264163int:MAGOH
InteractionIFIT2 interactions

YBX1 YBX3

1.16e-0364162int:IFIT2
InteractionNFYB interactions

YBX1 YBX3

1.19e-0365162int:NFYB
InteractionCSRP1 interactions

BMI1 YBX3

1.19e-0365162int:CSRP1
InteractionVEGFA interactions

YBX1 YBX3

1.23e-0366162int:VEGFA
InteractionAPOBEC3F interactions

YBX1 BMI1

1.23e-0366162int:APOBEC3F
InteractionZNF462 interactions

EGR2 XAGE2

1.31e-0368162int:ZNF462
InteractionMIR138-1 interactions

YBX1 YBX3

1.31e-0368162int:MIR138-1
InteractionCBX6 interactions

YBX1 BMI1 YBX3

1.34e-03283163int:CBX6
InteractionMIR9-3 interactions

YBX1 YBX3

1.38e-0370162int:MIR9-3
InteractionMIR29B2 interactions

YBX1 YBX3

1.42e-0371162int:MIR29B2
InteractionBHLHA15 interactions

YBX1 YBX3

1.42e-0371162int:BHLHA15
InteractionMIR140 interactions

YBX1 YBX3

1.42e-0371162int:MIR140
InteractionMIR122 interactions

YBX1 YBX3

1.42e-0371162int:MIR122
InteractionMIR29B1 interactions

YBX1 YBX3

1.50e-0373162int:MIR29B1
InteractionMIR18A interactions

YBX1 YBX3

1.50e-0373162int:MIR18A
InteractionSART3 interactions

YBX1 BMI1 YBX3

1.52e-03296163int:SART3
InteractionMIR20A interactions

YBX1 YBX3

1.54e-0374162int:MIR20A
InteractionBCL11B interactions

EGR2 SAP130

1.54e-0374162int:BCL11B
InteractionMIR15A interactions

YBX1 YBX3

1.59e-0375162int:MIR15A
InteractionTHAP3 interactions

YBX1 YBX3

1.59e-0375162int:THAP3
InteractionBCOR interactions

CSN1S1 EGR2 BMI1

1.61e-03302163int:BCOR
InteractionMIR16-1 interactions

YBX1 YBX3

1.63e-0376162int:MIR16-1
InteractionMIR199A2 interactions

YBX1 YBX3

1.63e-0376162int:MIR199A2
InteractionMIR429 interactions

YBX1 YBX3

1.63e-0376162int:MIR429
InteractionMIR7-3 interactions

YBX1 YBX3

1.63e-0376162int:MIR7-3
InteractionMIR9-2 interactions

YBX1 YBX3

1.67e-0377162int:MIR9-2
InteractionMIR200A interactions

YBX1 YBX3

1.67e-0377162int:MIR200A
InteractionMIR92A1 interactions

YBX1 YBX3

1.71e-0378162int:MIR92A1
InteractionMIR451A interactions

YBX1 YBX3

1.71e-0378162int:MIR451A
InteractionMIR98 interactions

YBX1 YBX3

1.71e-0378162int:MIR98
InteractionMIR222 interactions

YBX1 YBX3

1.76e-0379162int:MIR222
InteractionMIR206 interactions

YBX1 YBX3

1.76e-0379162int:MIR206
InteractionMIR1-2 interactions

YBX1 YBX3

1.76e-0379162int:MIR1-2
InteractionMIR34C interactions

YBX1 YBX3

1.76e-0379162int:MIR34C
InteractionMIR143 interactions

YBX1 YBX3

1.80e-0380162int:MIR143
InteractionIFIT3 interactions

YBX1 YBX3

1.80e-0380162int:IFIT3
InteractionMIR145 interactions

YBX1 YBX3

1.85e-0381162int:MIR145
InteractionMIR10B interactions

YBX1 YBX3

1.89e-0382162int:MIR10B
InteractionH2AC20 interactions

YBX1 BMI1 YBX3

1.91e-03320163int:H2AC20
InteractionSRA1 interactions

EGR2 YBX1

1.94e-0383162int:SRA1
InteractionKLHL8 interactions

BMI1 XAGE2

1.94e-0383162int:KLHL8
InteractionMIR106A interactions

YBX1 YBX3

1.94e-0383162int:MIR106A
InteractionMIR31 interactions

YBX1 YBX3

1.98e-0384162int:MIR31
InteractionMIR199A1 interactions

YBX1 YBX3

1.98e-0384162int:MIR199A1
InteractionMIR200B interactions

YBX1 YBX3

1.98e-0384162int:MIR200B
InteractionMIR7-2 interactions

YBX1 YBX3

1.98e-0384162int:MIR7-2
InteractionMIR16-2 interactions

YBX1 YBX3

2.03e-0385162int:MIR16-2
InteractionMIR107 interactions

YBX1 YBX3

2.03e-0385162int:MIR107
InteractionMIR17 interactions

YBX1 YBX3

2.03e-0385162int:MIR17
InteractionMIR18B interactions

YBX1 YBX3

2.03e-0385162int:MIR18B
InteractionBCORL1 interactions

EGR2 BMI1

2.03e-0385162int:BCORL1
InteractionMIR93 interactions

YBX1 YBX3

2.03e-0385162int:MIR93
InteractionMIR9-1 interactions

YBX1 YBX3

2.03e-0385162int:MIR9-1
InteractionMIR20B interactions

YBX1 YBX3

2.08e-0386162int:MIR20B
InteractionMIR29A interactions

YBX1 YBX3

2.13e-0387162int:MIR29A
InteractionMIR141 interactions

YBX1 YBX3

2.17e-0388162int:MIR141
InteractionMIR138-2 interactions

YBX1 YBX3

2.17e-0388162int:MIR138-2
InteractionMIR29C interactions

YBX1 YBX3

2.22e-0389162int:MIR29C
InteractionMIR221 interactions

YBX1 YBX3

2.27e-0390162int:MIR221
InteractionMIR92A2 interactions

YBX1 YBX3

2.27e-0390162int:MIR92A2
InteractionMIR1-1 interactions

YBX1 YBX3

2.27e-0390162int:MIR1-1
InteractionPCGF3 interactions

EGR2 BMI1

2.27e-0390162int:PCGF3
InteractionNOP10 interactions

YBX1 BMI1

2.32e-0391162int:NOP10
InteractionMIR200C interactions

YBX1 YBX3

2.32e-0391162int:MIR200C
InteractionMIR155 interactions

YBX1 YBX3

2.37e-0392162int:MIR155
InteractionMIR128-1 interactions

YBX1 YBX3

2.37e-0392162int:MIR128-1
InteractionPTCD3 interactions

YBX1 BMI1 YBX3

2.38e-03346163int:PTCD3
InteractionMIR214 interactions

YBX1 YBX3

2.42e-0393162int:MIR214
InteractionMIR205 interactions

YBX1 YBX3

2.42e-0393162int:MIR205
InteractionMIR19B2 interactions

YBX1 YBX3

2.48e-0394162int:MIR19B2
InteractionMIRLET7F1 interactions

YBX1 YBX3

2.48e-0394162int:MIRLET7F1
InteractionNCBP1 interactions

YBX1 BMI1 FASTK

2.52e-03353163int:NCBP1
InteractionMIRLET7A2 interactions

YBX1 YBX3

2.58e-0396162int:MIRLET7A2
InteractionMIRLET7C interactions

YBX1 YBX3

2.63e-0397162int:MIRLET7C
InteractionMIR21 interactions

YBX1 YBX3

2.63e-0397162int:MIR21
InteractionSTMN2 interactions

YBX1 YBX3

2.63e-0397162int:STMN2
InteractionNEIL3 interactions

YBX1 YBX3

2.63e-0397162int:NEIL3
InteractionMIRLET7F2 interactions

YBX1 YBX3

2.63e-0397162int:MIRLET7F2
InteractionMIR363 interactions

YBX1 YBX3

2.63e-0397162int:MIR363
InteractionPAXIP1 interactions

EGR2 YBX1 YBX3

2.64e-03359163int:PAXIP1
InteractionFOXP4 interactions

EGR2 XAGE2

2.69e-0398162int:FOXP4
InteractionMIR106B interactions

YBX1 YBX3

2.69e-0398162int:MIR106B
InteractionSS18L1 interactions

EGR2 BMI1

2.69e-0398162int:SS18L1
InteractionMIR128-2 interactions

YBX1 YBX3

2.74e-0399162int:MIR128-2
GeneFamilyY box binding proteins

YBX1 YBX3

1.21e-063122106
CoexpressionAtlasdev gonad_e12.5_M_InterstitTestis_Sma_k-means-cluster#4_top-relative-expression-ranked_100

HS3ST3A1 EGR2

2.72e-059192gudmap_dev gonad_e12.5_M_InterstitTestis_Sma_k4_100
ComputationalGenes in the cancer module 98.

EGR2 YBX1 BMI1 YBX3

4.73e-04393114MODULE_98
ComputationalGenes in the cancer module 197.

EGR2 YBX1 BMI1

6.25e-04174113MODULE_197
DiseaseColonic Neoplasms

YBX1 ALOX12B

3.02e-03152162C0009375
DiseaseMalignant tumor of colon

YBX1 ALOX12B

3.29e-03159162C0007102
DiseaseAdenocarcinoma of lung (disorder)

FASTK ALOX12B

5.46e-03206162C0152013
Diseasecardiac troponin T measurement

HS3ST3A1 EGR2

6.14e-03219162EFO_0005043
Diseasediet measurement

EGR2 POM121L2 DENND4B

1.77e-021049163EFO_0008111

Protein segments in the cluster

PeptideGeneStartEntry
PRRAYSFQPRPLRLP

C2orf16

1441

Q68DN1
RQLPKRRLPFPEPYI

BMP3

226

P12645
PLRPILRPRKYPNRP

EGR2

316

P11161
RLPRRQQVPIFPQPL

FASTK

376

Q14296
RRNGPLPLKYRVRPT

BMI1

216

P35226
RPKLPLRYPERLQNP

CSN1S1

16

P47710
LQLPQWRRRRPPAPR

HS3ST3A1

91

Q9Y663
LTQRPPASLPRRPRF

LINC00304

101

Q8N9R0
RQRLLRDLRPFPAPP

CYP4X1

36

Q8N118
SYRPPVRRHRNPNRP

ALOX12B

161

O75342
PYLERPSPTRPLQRQ

DENND4B

926

O75064
IPENPLRFLYPRIPR

STAT2

656

P52630
PRYRPQQHLLLPLGR

PRORY

111

Q9H606
PRYRPVRRRPNLDPA

POM121L2

51

Q96KW2
RPYNYRRRPRPPNAP

YBX3

331

P16989
RSTYRPRPRRSLQPP

XAGE2

6

Q96GT9
YRPRFRRGPPRQRQP

YBX1

241

P67809
RPLPPRLLQPALQRY

WDR97

1596

A6NE52
PPTQKPQPLILRRRR

SERINC4

491

A6NH21
VRPRPPITLLRHYRN

SAP130

891

Q9H0E3
SLQLPRPRPRPYNRI

SEZ6

956

Q53EL9
QPALPQLPRRPRTLD

PRRT1B

41

A0A1B0GWB2