Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctioncis-regulatory region sequence-specific DNA binding

HOXA3 SOX1 SOX2 LHX1 HOXB3 FOXD3 SALL2 MTF1 HELT GLI2 GLI3 GATA6 SMARCA4 POU3F4 DLX2 ONECUT1 TET3 GLIS1 ZIC2 FOXJ1

2.50e-0912716620GO:0000987
GeneOntologyMolecularFunctionRNA polymerase II cis-regulatory region sequence-specific DNA binding

HOXA3 SOX1 SOX2 HOXB3 FOXD3 SALL2 MTF1 HELT GLI2 GLI3 GATA6 SMARCA4 POU3F4 DLX2 ONECUT1 TET3 GLIS1 ZIC2 FOXJ1

1.13e-0812446619GO:0000978
GeneOntologyMolecularFunctionRNA polymerase II transcription regulatory region sequence-specific DNA binding

HOXA3 SOX1 SOX2 LHX1 HOXB3 FOXD3 SALL2 MTF1 HELT GLI2 GLI3 GATA6 SMARCA4 POU3F4 DLX2 ONECUT1 TET3 GLIS1 ZIC2 FOXJ1

2.59e-0814596620GO:0000977
GeneOntologyMolecularFunctionDNA-binding transcription factor activity, RNA polymerase II-specific

HOXA3 SOX1 SOX2 LHX1 HOXB3 FOXD3 SALL2 MTF1 HELT GLI2 GLI3 GATA6 POU3F4 DLX2 ONECUT1 GLIS1 ZIC2 FOXJ1

4.58e-0714126618GO:0000981
GeneOntologyMolecularFunctionDNA-binding transcription activator activity, RNA polymerase II-specific

SOX1 SOX2 HOXB3 SALL2 MTF1 GLI2 DLX2 ONECUT1 GLIS1 ZIC2 FOXJ1

2.03e-065606611GO:0001228
GeneOntologyMolecularFunctionDNA-binding transcription activator activity

SOX1 SOX2 HOXB3 SALL2 MTF1 GLI2 DLX2 ONECUT1 GLIS1 ZIC2 FOXJ1

2.25e-065666611GO:0001216
GeneOntologyMolecularFunctionchromatin binding

SOX2 TNRC18 GLI2 GLI3 GATA6 SMARCA4 DLX2 ARID1A ONECUT1 JMJD1C ZIC2

2.78e-057396611GO:0003682
GeneOntologyMolecularFunctionchromatin DNA binding

SOX2 GLI2 SMARCA4 JMJD1C ZIC2

2.28e-04167665GO:0031490
GeneOntologyBiologicalProcesschordate embryonic development

HOXA3 SOX2 RGMA LHX1 HOXB3 FOXD3 SULF2 SALL2 AMOT GLI2 GLI3 DCHS1 GATA6 SMARCA4 DLX2 CUBN ARID1A ZIC2

1.67e-109066418GO:0043009
GeneOntologyBiologicalProcessembryo development ending in birth or egg hatching

HOXA3 SOX2 RGMA LHX1 HOXB3 FOXD3 SULF2 SALL2 AMOT GLI2 GLI3 DCHS1 GATA6 SMARCA4 DLX2 CUBN ARID1A ZIC2

2.51e-109296418GO:0009792
GeneOntologyBiologicalProcesspositive regulation of transcription by RNA polymerase II

SOX1 SOX2 RGMA HOXB3 FOXD3 SALL2 MTF1 VGLL2 HELT GLI2 GLI3 GATA6 SMARCA4 CRTC1 DLX2 ONECUT1 TET3 GLIS1 ZIC2 FOXJ1

3.65e-0913906420GO:0045944
GeneOntologyBiologicalProcessembryonic morphogenesis

HOXA3 SOX2 RGMA LHX1 HOXB3 AMOT GLI2 GLI3 GATA6 SMARCA4 POU3F4 DLX2 ARID1A ZIC2

2.96e-087136414GO:0048598
GeneOntologyBiologicalProcessembryo development

HOXA3 SOX2 RGMA LHX1 HOXB3 FOXD3 SULF2 SALL2 AMOT GLI2 GLI3 DCHS1 GATA6 SMARCA4 POU3F4 DLX2 CUBN ARID1A ZIC2

3.92e-0814376419GO:0009790
GeneOntologyBiologicalProcessembryonic organ morphogenesis

HOXA3 SOX2 LHX1 HOXB3 GLI2 GLI3 SMARCA4 POU3F4 DLX2 ARID1A

1.20e-073516410GO:0048562
GeneOntologyBiologicalProcessnegative regulation of transcription by RNA polymerase II

SOX1 SOX2 HDAC9 HOXB3 FOXD3 SALL2 HELT GLI2 GLI3 GATA6 SMARCA4 DLX2 ARID1A GLIS1 FOXJ1

5.71e-0710536415GO:0000122
GeneOntologyBiologicalProcesspattern specification process

HOXA3 SOX1 LHX1 HOXB3 HELT GLI2 GLI3 DCHS1 DLX2 ZIC2 FOXJ1

5.86e-075266411GO:0007389
GeneOntologyBiologicalProcessnegative regulation of DNA-templated transcription

SOX1 SOX2 HDAC9 LHX1 HOXB3 FOXD3 SALL2 HELT GLI2 GLI3 GATA6 SMARCA4 DLX2 ARID1A GLIS1 ZIC2 FOXJ1

8.02e-0713996417GO:0045892
GeneOntologyBiologicalProcessnegative regulation of RNA biosynthetic process

SOX1 SOX2 HDAC9 LHX1 HOXB3 FOXD3 SALL2 HELT GLI2 GLI3 GATA6 SMARCA4 DLX2 ARID1A GLIS1 ZIC2 FOXJ1

9.22e-0714136417GO:1902679
GeneOntologyBiologicalProcesscell fate commitment

SOX1 SOX2 GLI2 GLI3 GATA6 SMARCA4 DLX2 ONECUT1 GLIS1

9.55e-07338649GO:0045165
GeneOntologyBiologicalProcessembryonic organ development

HOXA3 SOX2 LHX1 HOXB3 FOXD3 GLI2 GLI3 SMARCA4 POU3F4 DLX2 ARID1A

1.10e-065616411GO:0048568
GeneOntologyBiologicalProcesscell fate specification involved in pattern specification

SOX1 GLI2 GLI3

1.58e-068643GO:0060573
GeneOntologyBiologicalProcessventral spinal cord interneuron specification

SOX1 GLI2 GLI3

1.58e-068643GO:0021521
GeneOntologyBiologicalProcessforebrain generation of neurons

SOX1 SOX2 GLI3 POU3F4 DLX2

1.76e-0665645GO:0021872
GeneOntologyBiologicalProcessregionalization

HOXA3 SOX1 LHX1 HOXB3 HELT GLI2 GLI3 DLX2 ZIC2 FOXJ1

2.01e-064786410GO:0003002
GeneOntologyBiologicalProcessneural tube development

RGMA SALL2 GLI2 GLI3 DCHS1 ARID1A ZIC2

3.02e-06202647GO:0021915
GeneOntologyBiologicalProcesstube development

SOX2 RGMA HDAC9 LHX1 SALL2 ABCA12 AMOT GLI2 GLI3 DCHS1 GATA6 SMARCA4 ARID1A JMJD1C ZIC2 FOXJ1

4.13e-0614026416GO:0035295
GeneOntologyBiologicalProcesscentral nervous system neuron differentiation

SOX1 SOX2 LHX1 GLI2 GLI3 POU3F4 DLX2

4.84e-06217647GO:0021953
GeneOntologyBiologicalProcessanimal organ morphogenesis

HOXA3 SOX1 SOX2 LHX1 HOXB3 SULF2 ABCA12 GLI2 GLI3 DCHS1 GATA6 SMARCA4 POU3F4 DLX2 ARID1A

5.78e-0612696415GO:0009887
GeneOntologyBiologicalProcessventral spinal cord interneuron fate commitment

SOX1 GLI2 GLI3

6.14e-0612643GO:0060579
GeneOntologyBiologicalProcesscell fate commitment involved in pattern specification

SOX1 GLI2 GLI3

6.14e-0612643GO:0060581
GeneOntologyBiologicalProcessembryonic skeletal system development

HOXA3 LHX1 HOXB3 SULF2 GLI3 DLX2

6.56e-06148646GO:0048706
GeneOntologyBiologicalProcessepithelium development

SOX2 RGMA LHX1 SALL2 ABCA12 GLI2 GLI3 DCHS1 GATA6 SMARCA4 PIP5K1A ARID1A ONECUT1 JMJD1C ZIC2 FOXJ1

7.49e-0614696416GO:0060429
GeneOntologyBiologicalProcessanatomical structure formation involved in morphogenesis

HOXA3 SOX2 RGMA HDAC9 LHX1 FOXD3 ANK2 AMOT GLI2 GLI3 DCHS1 GATA6 SMARCA4 ARID1A ZIC2 FOXJ1

8.44e-0614836416GO:0048646
GeneOntologyBiologicalProcessneuron fate commitment

SOX1 SOX2 GLI2 GLI3 DLX2

9.29e-0691645GO:0048663
GeneOntologyBiologicalProcessventral spinal cord interneuron differentiation

SOX1 GLI2 GLI3

1.01e-0514643GO:0021514
GeneOntologyBiologicalProcessendocrine system development

HOXA3 SOX2 HOXB3 GLI2 GATA6 ONECUT1

1.06e-05161646GO:0035270
GeneOntologyBiologicalProcessbrain development

SOX1 SOX2 LHX1 HOXB3 GLI2 GLI3 SMARCA4 POU3F4 DLX2 ARID1A ZIC2 FOXJ1

1.12e-058596412GO:0007420
GeneOntologyBiologicalProcesssensory organ development

SOX1 SOX2 LHX1 SALL2 GLI2 GLI3 DCHS1 SMARCA4 POU3F4 DLX2 ARID1A

1.36e-057306411GO:0007423
GeneOntologyBiologicalProcesscentral nervous system development

SOX1 SOX2 LHX1 HOXB3 MTF1 HELT GLI2 GLI3 SMARCA4 POU3F4 DLX2 ARID1A ZIC2 FOXJ1

1.42e-0511976414GO:0007417
GeneOntologyBiologicalProcessforebrain development

SOX1 SOX2 LHX1 GLI2 GLI3 SMARCA4 POU3F4 DLX2 ARID1A

1.90e-05489649GO:0030900
GeneOntologyBiologicalProcesshead development

SOX1 SOX2 LHX1 HOXB3 GLI2 GLI3 SMARCA4 POU3F4 DLX2 ARID1A ZIC2 FOXJ1

2.20e-059196412GO:0060322
GeneOntologyBiologicalProcessforebrain neuron differentiation

SOX1 SOX2 POU3F4 DLX2

2.20e-0553644GO:0021879
GeneOntologyBiologicalProcessembryonic skeletal system morphogenesis

HOXA3 LHX1 HOXB3 GLI3 DLX2

2.24e-05109645GO:0048704
GeneOntologyBiologicalProcesssmoothened signaling pathway involved in ventral spinal cord interneuron specification

GLI2 GLI3

2.84e-053642GO:0021775
GeneOntologyBiologicalProcesssmoothened signaling pathway involved in spinal cord motor neuron cell fate specification

GLI2 GLI3

2.84e-053642GO:0021776
GeneOntologyBiologicalProcesssmoothened signaling pathway involved in ventral spinal cord patterning

GLI2 GLI3

2.84e-053642GO:0021910
GeneOntologyBiologicalProcessventral spinal cord development

SOX1 LHX1 GLI2 GLI3

2.94e-0557644GO:0021517
GeneOntologyBiologicalProcessspinal cord dorsal/ventral patterning

SOX1 GLI2 GLI3

3.13e-0520643GO:0021513
GeneOntologyBiologicalProcessspinal cord patterning

SOX1 GLI2 GLI3

4.21e-0522643GO:0021511
GeneOntologyBiologicalProcesscell differentiation in spinal cord

SOX1 LHX1 GLI2 GLI3

4.38e-0563644GO:0021515
GeneOntologyBiologicalProcessepithelial tube morphogenesis

SOX2 RGMA LHX1 GLI2 GLI3 DCHS1 ARID1A ZIC2

4.59e-05421648GO:0060562
GeneOntologyBiologicalProcessgland development

HOXA3 SOX2 HOXB3 SULF2 GLI2 GLI3 GATA6 SMARCA4 ONECUT1

5.33e-05558649GO:0048732
GeneOntologyBiologicalProcessglossopharyngeal nerve morphogenesis

HOXA3 HOXB3

5.66e-054642GO:0021615
GeneOntologyBiologicalProcesssensory organ morphogenesis

SOX1 SOX2 LHX1 GLI2 GLI3 POU3F4 ARID1A

9.11e-05343647GO:0090596
GeneOntologyBiologicalProcessglossopharyngeal nerve development

HOXA3 HOXB3

9.42e-055642GO:0021563
GeneOntologyBiologicalProcessanimal organ formation

HOXA3 GLI2 GLI3 GATA6

1.01e-0478644GO:0048645
GeneOntologyBiologicalProcessheart development

HDAC9 ANK2 GLI2 GLI3 DCHS1 DYRK1A GATA6 SMARCA4 ARID1A FOXJ1

1.05e-047576410GO:0007507
GeneOntologyBiologicalProcesscartilage development

HOXA3 HOXB3 SULF2 GLI2 GLI3 DLX2

1.06e-04243646GO:0051216
GeneOntologyBiologicalProcesseye development

SOX1 SOX2 LHX1 SALL2 GLI3 SMARCA4 DLX2 ARID1A

1.15e-04480648GO:0001654
GeneOntologyBiologicalProcessanterior/posterior pattern specification

HOXA3 LHX1 HOXB3 HELT GLI2 GLI3

1.16e-04247646GO:0009952
GeneOntologyBiologicalProcessmorphogenesis of an epithelium

SOX2 RGMA LHX1 GLI2 GLI3 DCHS1 SMARCA4 ARID1A ZIC2

1.18e-04619649GO:0002009
GeneOntologyBiologicalProcessregulation of cell development

SOX2 NEDD9 RGMA HDAC9 HOXB3 HELT GLI2 GLI3 SMARCA4 DLX2 ARID1A FOXJ1

1.20e-0410956412GO:0060284
GeneOntologyBiologicalProcessvisual system development

SOX1 SOX2 LHX1 SALL2 GLI3 SMARCA4 DLX2 ARID1A

1.20e-04483648GO:0150063
GeneOntologyBiologicalProcesscranial nerve morphogenesis

HOXA3 HOXB3 GLI3

1.33e-0432643GO:0021602
GeneOntologyBiologicalProcesssensory system development

SOX1 SOX2 LHX1 SALL2 GLI3 SMARCA4 DLX2 ARID1A

1.34e-04491648GO:0048880
GeneOntologyBiologicalProcessmorphogenesis of a branching structure

SOX2 LHX1 GLI2 GLI3 DCHS1 DLX2

1.48e-04258646GO:0001763
GeneOntologyBiologicalProcesstube morphogenesis

SOX2 RGMA HDAC9 LHX1 AMOT GLI2 GLI3 DCHS1 GATA6 SMARCA4 ARID1A ZIC2

1.54e-0411256412GO:0035239
GeneOntologyBiologicalProcessendoderm development

SOX2 LHX1 GATA6 ONECUT1

1.62e-0488644GO:0007492
GeneOntologyBiologicalProcesslung development

SOX2 ABCA12 GLI2 GLI3 GATA6 FOXJ1

1.85e-04269646GO:0030324
GeneOntologyBiologicalProcesscamera-type eye morphogenesis

SOX1 SOX2 LHX1 GLI3 ARID1A

1.90e-04171645GO:0048593
GeneOntologyBiologicalProcesssmoothened signaling pathway involved in dorsal/ventral neural tube patterning

GLI2 GLI3

1.97e-047642GO:0060831
GeneOntologyBiologicalProcessrespiratory tube development

SOX2 ABCA12 GLI2 GLI3 GATA6 FOXJ1

2.01e-04273646GO:0030323
GeneOntologyBiologicalProcessproximal/distal pattern formation

GLI2 GLI3 DLX2

2.05e-0437643GO:0009954
GeneOntologyBiologicalProcessneuron fate specification

SOX1 GLI2 GLI3

3.00e-0442643GO:0048665
GeneOntologyBiologicalProcessepithelial cell differentiation

SOX2 LHX1 ABCA12 GLI2 GATA6 SMARCA4 PIP5K1A ONECUT1 JMJD1C FOXJ1

3.24e-048706410GO:0030855
GeneOntologyBiologicalProcesshindgut morphogenesis

GLI2 GLI3

3.36e-049642GO:0007442
GeneOntologyBiologicalProcessdorsal/ventral pattern formation

SOX1 LHX1 GLI2 GLI3

3.42e-04107644GO:0009953
GeneOntologyBiologicalProcessodontogenesis of dentin-containing tooth

GLI2 GLI3 GATA6 DLX2

3.42e-04107644GO:0042475
GeneOntologyBiologicalProcesscamera-type eye development

SOX1 SOX2 LHX1 GLI3 SMARCA4 DLX2 ARID1A

3.44e-04426647GO:0043010
GeneOntologyBiologicalProcessrespiratory system development

SOX2 ABCA12 GLI2 GLI3 GATA6 FOXJ1

3.63e-04305646GO:0060541
GeneOntologyBiologicalProcessnerve development

HOXA3 HOXB3 SULF2 GLI3

3.67e-04109644GO:0021675
GeneOntologyBiologicalProcessbranching morphogenesis of an epithelial tube

SOX2 LHX1 GLI2 GLI3 DCHS1

3.73e-04198645GO:0048754
GeneOntologyBiologicalProcesshindgut development

GLI2 GLI3

4.20e-0410642GO:0061525
GeneOntologyBiologicalProcesseye morphogenesis

SOX1 SOX2 LHX1 GLI3 ARID1A

4.28e-04204645GO:0048592
GeneOntologyBiologicalProcessdevelopmental growth

SOX2 RGMA LHX1 HELT GLI2 GLI3 DYRK1A GATA6 SMARCA4 TNKS2

4.66e-049116410GO:0048589
GeneOntologyBiologicalProcessendoderm formation

SOX2 LHX1 GATA6

4.74e-0449643GO:0001706
GeneOntologyBiologicalProcesstissue morphogenesis

SOX2 RGMA LHX1 GLI2 GLI3 DCHS1 SMARCA4 ARID1A ZIC2

4.87e-04750649GO:0048729
GeneOntologyBiologicalProcessin utero embryonic development

SOX2 FOXD3 AMOT GLI2 GLI3 GATA6 SMARCA4 CUBN

4.94e-04596648GO:0001701
GeneOntologyBiologicalProcessgastrulation

SOX2 LHX1 AMOT GATA6 ARID1A

5.10e-04212645GO:0007369
GeneOntologyBiologicalProcessspinal cord motor neuron cell fate specification

GLI2 GLI3

5.12e-0411642GO:0021520
GeneOntologyBiologicalProcessspinal cord development

SOX1 LHX1 GLI2 GLI3

5.12e-04119644GO:0021510
GeneOntologyBiologicalProcessembryonic cranial skeleton morphogenesis

LHX1 GLI3 DLX2

5.65e-0452643GO:0048701
GeneOntologyBiologicalProcesscell fate specification

SOX1 SOX2 GLI2 GLI3

5.80e-04123644GO:0001708
GeneOntologyBiologicalProcessformation of primary germ layer

SOX2 LHX1 GATA6 ARID1A

5.98e-04124644GO:0001704
GeneOntologyBiologicalProcessskeletal system development

HOXA3 LHX1 HOXB3 SULF2 GLI2 GLI3 DCHS1 DLX2

6.07e-04615648GO:0001501
GeneOntologyBiologicalProcessconnective tissue development

HOXA3 HOXB3 SULF2 GLI2 GLI3 DLX2

6.74e-04343646GO:0061448
GeneOntologyBiologicalProcessregulation of T cell differentiation

GLI2 GLI3 SMARCA4 ARID1A FOXJ1

6.81e-04226645GO:0045580
GeneOntologyBiologicalProcessmorphogenesis of a branching epithelium

SOX2 LHX1 GLI2 GLI3 DCHS1

8.27e-04236645GO:0061138
GeneOntologyBiologicalProcesspancreatic A cell differentiation

GATA6 ONECUT1

8.42e-0414642GO:0003310
GeneOntologyBiologicalProcessstem cell population maintenance

SOX2 TRIM8 SMARCA4 ARID1A JMJD1C

8.43e-04237645GO:0019827
GeneOntologyBiologicalProcesscochlea development

GLI2 DCHS1 POU3F4

9.02e-0461643GO:0090102
GeneOntologyBiologicalProcesspositive regulation of leukocyte differentiation

NEDD9 GLI2 GLI3 SMARCA4 ARID1A

9.26e-04242645GO:1902107
GeneOntologyBiologicalProcessmaintenance of cell number

SOX2 TRIM8 SMARCA4 ARID1A JMJD1C

9.26e-04242645GO:0098727
GeneOntologyBiologicalProcesspositive regulation of hemopoiesis

NEDD9 GLI2 GLI3 SMARCA4 ARID1A

9.26e-04242645GO:1903708
GeneOntologyBiologicalProcessphospholipid efflux

ABCA1 ABCA12

9.70e-0415642GO:0033700
GeneOntologyBiologicalProcessregulation of Wnt signaling pathway

SOX2 SULF2 ZNRF3 GLI3 SMARCA4 TNKS2

9.71e-04368646GO:0030111
GeneOntologyBiologicalProcesspositive regulation of T cell differentiation

GLI2 GLI3 SMARCA4 ARID1A

1.05e-03144644GO:0045582
GeneOntologyBiologicalProcesstranscription initiation-coupled chromatin remodeling

SMARCA4 ARID1A TET3

1.08e-0365643GO:0045815
GeneOntologyCellularComponentchromatin

HOXA3 SOX1 SOX2 LHX1 HOXB3 FOXD3 HELT GATA6 SMARCA4 POU3F4 DLX2 ARID1A ONECUT1 JMJD1C FOXJ1

4.51e-0514806615GO:0000785
GeneOntologyCellularComponentGLI-SUFU complex

GLI2 GLI3

5.87e-054662GO:1990788
GeneOntologyCellularComponentbBAF complex

SMARCA4 ARID1A

4.35e-0410662GO:0140092
GeneOntologyCellularComponentciliary tip

DYNC2I2 GLI2 GLI3

4.70e-0448663GO:0097542
GeneOntologyCellularComponentnpBAF complex

SMARCA4 ARID1A

8.72e-0414662GO:0071564
GeneOntologyCellularComponentnBAF complex

SMARCA4 ARID1A

1.14e-0316662GO:0071565
HumanPhenoAnterior pituitary dysgenesis

SOX2 GLI2 GATA6 POU3F4 HID1

7.36e-0639375HP:0010625
HumanPhenoAnterior hypopituitarism

IARS2 ZNRF3 GLI2 GLI3 DYRK1A POU3F4 HID1 ZIC2

3.61e-05182378HP:0000830
HumanPhenoHypopituitarism

IARS2 ZNRF3 GLI2 GLI3 DYRK1A POU3F4 HID1 ZIC2

5.11e-05191378HP:0040075
HumanPhenoGrowth hormone and pituitary abnormality

SOX2 IARS2 ZNRF3 GLI2 GLI3 DYRK1A GATA6 POU3F4 HID1 ZIC2

6.14e-053193710HP:0000844
HumanPhenoAbnormality of the pituitary gland

SOX2 IARS2 ZNRF3 GLI2 GLI3 DYRK1A GATA6 POU3F4 HID1 ZIC2

6.14e-053193710HP:0000838
MousePhenoabnormal throat morphology

HOXA3 SOX2 GLI3

2.60e-067603MP:0010370
MousePhenoabnormal epiglottis morphology

HOXA3 SOX2 GLI3

2.60e-067603MP:0010371
MousePhenoperinatal lethality

HOXA3 SOX2 LHX1 HOXB3 ABCA1 SULF2 SALL2 ANK2 ZNRF3 ABCA12 GLI2 GLI3 DCHS1 NBEA DLX2 ARID1A ZIC2

3.27e-0611306017MP:0002081
MousePhenolethality during fetal growth through weaning, complete penetrance

HOXA3 SOX2 LHX1 SULF2 ANK2 DYNC2I2 ZNRF3 MTF1 ABCA12 COQ4 GLI2 GLI3 DCHS1 NBEA DLX2 ARID1A ZIC2 FOXJ1

3.56e-0612696018MP:0011111
MousePhenoperinatal lethality, complete penetrance

HOXA3 SOX2 LHX1 SULF2 ZNRF3 ABCA12 GLI2 GLI3 DCHS1 NBEA DLX2 ARID1A ZIC2

7.80e-067126013MP:0011089
MousePhenoabnormal prenatal growth/weight/body size

SOX2 LHX1 ATXN2L ABCA1 SULF2 DYNC2I2 MTF1 ABCA12 AMOT GLI2 GLI3 DYRK1A GATA6 NBEA CUBN ARID1A ONECUT1 PGM1 FOXJ1

8.65e-0614936019MP:0004196
MousePhenoabnormal embryonic tissue morphology

HOXA3 SOX2 RGMA LHX1 FOXD3 SALL2 DYNC2I2 ZNRF3 GLI2 GLI3 DCHS1 GATA6 CUBN ARID1A ZIC2 FOXJ1

1.27e-0511166016MP:0002085
MousePhenoabnormal prenatal body size

LHX1 ATXN2L ABCA1 SULF2 MTF1 ABCA12 AMOT GLI2 GLI3 DYRK1A GATA6 NBEA CUBN ARID1A PGM1 FOXJ1

1.27e-0511166016MP:0010866
MousePhenoabnormal forebrain morphology

SOX1 SOX2 NEDD9 LHX1 ATXN2L ANK2 DYNC2I2 MTF1 GLI3 DYRK1A NBEA DLX2 ARID1A ZIC2 FOXJ1

3.37e-0510726015MP:0000783
MousePhenoexencephaly

RGMA SALL2 DYNC2I2 GLI2 GLI3 SMARCA4 ZIC2

5.48e-05230607MP:0000914
MousePhenoprenatal lethality, incomplete penetrance

SOX2 RGMA LHX1 ATXN2L TNRC18 SULF2 DYNC2I2 AMOT GLI3 DYRK1A GATA6 PGM1

6.49e-057476012MP:0011101
MousePhenoembryonic lethality during organogenesis, incomplete penetrance

LHX1 ATXN2L SULF2 DYNC2I2 AMOT GLI3 DYRK1A

1.43e-04268607MP:0011108
MousePhenoabnormal embryo development

SOX2 RGMA LHX1 FOXD3 ABCA1 DYNC2I2 MTF1 AMOT GLI2 GLI3 DYRK1A GATA6 CUBN ARID1A ZIC2 FOXJ1

1.53e-0413706016MP:0001672
MousePhenopostnatal lethality

SOX2 ABCA1 SULF2 ANK2 HELT GLI2 GLI3 DCHS1 DYRK1A SMARCA4 TNKS2 ONECUT1 ZIC2 FOXJ1

1.54e-0410846014MP:0002082
MousePhenoabnormal developmental patterning

SOX2 LHX1 FOXD3 AMOT GLI2 GATA6 CUBN ARID1A ZIC2 FOXJ1

1.55e-045776010MP:0002084
MousePhenoabnormal embryo size

LHX1 ABCA1 SULF2 MTF1 AMOT GLI2 GLI3 DYRK1A GATA6 NBEA CUBN ARID1A PGM1

1.67e-049566013MP:0001697
MousePhenoabnormal right lung accessory lobe morphology

GLI2 GLI3

1.80e-045602MP:0009571
MousePhenoabnormal neural tube morphology

RGMA LHX1 SALL2 DYNC2I2 ZNRF3 GLI2 GLI3 DCHS1 ARID1A ZIC2

1.89e-045916010MP:0002151
MousePhenoabnormal intervertebral disk morphology

HOXA3 SOX2 GLI2 GLI3

1.92e-0467604MP:0004173
MousePhenoabnormal neural tube closure

RGMA SALL2 DYNC2I2 ZNRF3 GLI2 GLI3 ARID1A ZIC2

1.99e-04378608MP:0003720
MousePhenoabnormal nervous system development

SOX2 RGMA LHX1 SALL2 DYNC2I2 ZNRF3 GLI2 GLI3 DCHS1 DYRK1A SMARCA4 DLX2 ARID1A ZIC2 FOXJ1

2.05e-0412576015MP:0003861
MousePhenoabnormal left lung morphology

GLI3 ZIC2 FOXJ1

2.28e-0428603MP:0009569
MousePhenoabnormal palatine bone horizontal plate morphology

GLI2 GLI3 DLX2

2.28e-0428603MP:0004537
MousePhenoabnormal symphysis morphology

HOXA3 SOX2 GLI2 GLI3

2.40e-0471604MP:0030877
MousePhenoshort sternum

GLI2 GLI3 DCHS1

2.54e-0429603MP:0004321
MousePhenoabnormal laryngeal cartilage morphology

HOXA3 SOX2 GLI3

2.54e-0429603MP:0002256
MousePhenosmall trachea

HOXA3 GLI2

2.69e-046602MP:0004549
MousePhenoabnormal joint morphology

HOXA3 SOX2 HOXB3 SULF2 GLI2 GLI3 DLX2 ZIC2

2.77e-04397608MP:0002932
MousePhenoabnormal embryonic growth/weight/body size

SOX2 LHX1 ABCA1 SULF2 DYNC2I2 MTF1 AMOT GLI2 GLI3 DYRK1A GATA6 NBEA CUBN ARID1A PGM1

2.85e-0412956015MP:0002088
MousePhenoembryonic lethality during organogenesis

LHX1 ATXN2L SULF2 DYNC2I2 AMOT GLI3 DYRK1A GATA6 SMARCA4 CUBN ARID1A ZIC2

2.91e-048766012MP:0006207
MousePhenoembryonic lethality, incomplete penetrance

LHX1 ATXN2L SULF2 DYNC2I2 AMOT GLI3 DYRK1A PGM1

3.44e-04410608MP:0011102
MousePhenoprenatal lethality prior to heart atrial septation, incomplete penetrance

LHX1 ATXN2L SULF2 DYNC2I2 AMOT GLI3 DYRK1A PGM1

3.44e-04410608MP:0031660
MousePhenoabnormal olfactory lobe morphology

SOX1 GLI3 DLX2 ZIC2 FOXJ1

4.38e-04149605MP:0009944
MousePhenoabnormal cartilaginous joint morphology

HOXA3 SOX2 GLI2 GLI3

4.79e-0485604MP:0030875
MousePhenopostnatal lethality, incomplete penetrance

SOX2 ABCA1 SULF2 HELT GLI2 DYRK1A SMARCA4 TNKS2 ONECUT1 FOXJ1

5.07e-046696010MP:0011086
MousePhenoabnormal secondary palate morphology

HOXA3 SOX2 GLI2 GLI3 DLX2

5.90e-04159605MP:0013550
MousePhenoabnormal telencephalon morphology

SOX1 SOX2 NEDD9 ATXN2L ANK2 DYNC2I2 GLI3 DYRK1A DLX2 ZIC2 FOXJ1

5.93e-048126011MP:0000787
MousePhenoabnormal germ layer morphology

LHX1 FOXD3 DYNC2I2 GLI3 ARID1A

6.24e-04161605MP:0014138
MousePhenoanophthalmia

SOX2 MALRD1 MTF1 GLI3 SMARCA4 ZIC2

6.32e-04246606MP:0001293
MousePhenoaorta hypoplasia

HOXA3 FOXJ1

6.40e-049602MP:0010541
MousePhenodecreased cholesterol efflux

ABCA1 ABCA12

6.40e-049602MP:0003193
MousePhenoabnormal anterior visceral endoderm cell migration

FOXD3 AMOT

6.40e-049602MP:0011255
MousePhenofused tarsal bones

GLI3 ZIC2

6.40e-049602MP:0008919
MousePhenoabnormal larynx morphology

HOXA3 SOX2 GLI3

6.63e-0440603MP:0002249
MousePhenoabnormal lateral ventricle morphology

SOX2 ANK2 GLI3 ZIC2 FOXJ1

6.78e-04164605MP:0000823
MousePhenoabnormal pluripotent precursor cell morphology

GLI3 ARID1A ZIC2

7.66e-0442603MP:0002399
MousePhenomicrocephaly

GLI2 DYRK1A SMARCA4 ZIC2

7.89e-0497604MP:0000433
MousePhenoabsent maxillary shelf

GLI2 DLX2

7.97e-0410602MP:0000430
MousePhenoabnormal soft palate morphology

HOXA3 SOX2

7.97e-0410602MP:0003154
MousePhenolethality during fetal growth through weaning, incomplete penetrance

SOX2 HOXB3 ABCA1 SULF2 SALL2 ANK2 HELT GLI2 DYRK1A SMARCA4 TNKS2 ONECUT1 FOXJ1

8.00e-0411246013MP:0011112
MousePhenoabnormal ear morphology

SOX2 USP53 ABCA12 GLI2 GLI3 DCHS1 POU3F4 DLX2

8.48e-04470608MP:0002102
MousePhenoabnormal visceral endoderm physiology

FOXD3 AMOT

9.72e-0411602MP:0012028
MousePhenofusion of glossopharyngeal and vagus nerve

HOXA3 HOXB3

9.72e-0411602MP:0004568
MousePhenoabnormal palatine bone morphology

GLI2 GLI3 DLX2

1.00e-0346603MP:0005249
MousePhenoprenatal growth retardation

SOX2 ATXN2L ABCA1 DYNC2I2 MTF1 AMOT GLI3 DYRK1A GATA6 ONECUT1 FOXJ1

1.04e-038696011MP:0010865
MousePhenodecreased corpus callosum size

SOX2 ANK2 ZIC2

1.07e-0347603MP:0000781
MousePhenoabnormal palate bone morphology

GLI2 GLI3 DLX2

1.35e-0351603MP:0009891
MousePhenosacral vertebral fusion

SULF2 GLI3

1.37e-0313602MP:0004622
MousePhenoabnormal corpus callosum size

SOX2 ANK2 ZIC2

1.43e-0352603MP:0020573
DomainDUF4074

HOXA3 HOXB3

3.35e-053632IPR025281
DomainDUF4074

HOXA3 HOXB3

3.35e-053632PF13293
DomainHTH_motif

HOXA3 LHX1 HOXB3 DLX2

8.62e-0569634IPR000047
DomainSOXp

SOX1 SOX2

1.11e-045632PF12336
DomainSOX_fam

SOX1 SOX2

1.11e-045632IPR022097
DomainHomeobox

HOXA3 LHX1 HOXB3 POU3F4 DLX2 ONECUT1

1.36e-04234636PF00046
DomainHOMEOBOX_1

HOXA3 LHX1 HOXB3 POU3F4 DLX2 ONECUT1

1.42e-04236636PS00027
DomainHOX

HOXA3 LHX1 HOXB3 POU3F4 DLX2 ONECUT1

1.46e-04237636SM00389
DomainHOMEOBOX_2

HOXA3 LHX1 HOXB3 POU3F4 DLX2 ONECUT1

1.52e-04239636PS50071
DomainHomeobox_dom

HOXA3 LHX1 HOXB3 POU3F4 DLX2 ONECUT1

1.52e-04239636IPR001356
Domain-

HOXA3 LHX1 HOXB3 POU3F4 DLX2 ONECUT1

3.78e-042836361.10.10.60
DomainHomeobox_CS

HOXA3 LHX1 HOXB3 POU3F4 DLX2

4.09e-04186635IPR017970
DomainABC_A

ABCA1 ABCA12

7.23e-0412632IPR026082
DomainHomeodomain-like

HOXA3 LHX1 HOXB3 POU3F4 DLX2 ONECUT1

8.74e-04332636IPR009057
DomainHomeobox_Antennapedia_CS

HOXA3 HOXB3

2.26e-0321632IPR001827
DomainANTENNAPEDIA

HOXA3 HOXB3

2.95e-0324632PS00032
DomainHomeobox_metazoa

HOXA3 HOXB3 DLX2

3.49e-0390633IPR020479
Domain-

POU3F4 ONECUT1

3.72e-03276321.10.260.40
DomainLambda_DNA-bd_dom

POU3F4 ONECUT1

4.29e-0329632IPR010982
DomainABC_transporter_CS

ABCA1 ABCA12

8.84e-0342632IPR017871
PathwayWP_TUMOR_SUPPRESSOR_ACTIVITY_OF_SMARCB1

GLI2 GLI3 SMARCA4 ARID1A

2.93e-0631464M39522
PathwayREACTOME_FORMATION_OF_THE_ANTERIOR_NEURAL_PLATE

SOX1 SOX2 ZIC2

5.27e-0611463M48031
PathwayWP_ECTODERM_DIFFERENTIATION

SOX2 RGMA LHX1 GLI3 GATA6 PGM1

6.32e-06142466M39575
PathwayWP_ENDODERM_DIFFERENTIATION

SOX2 LHX1 GLI2 GATA6 CRTC1 ONECUT1

6.58e-06143466M39591
PathwayBIOCARTA_SHH_PATHWAY

GLI2 GLI3 DYRK1A

1.44e-0515463MM1498
PathwayBIOCARTA_SHH_PATHWAY

GLI2 GLI3 DYRK1A

1.77e-0516463M11792
PathwayREACTOME_DEVELOPMENTAL_BIOLOGY

HOXA3 SOX1 SOX2 RGMA LHX1 HOXB3 FOXD3 ANK2 GATA6 SMARCA4 UNG ARID1A ONECUT1 TET3 ZIC2

2.86e-0514324615M509
PathwayWP_HEDGEHOG_SIGNALING_PATHWAY

GLI2 GLI3 DYRK1A

4.79e-0522463MM15924
PathwayREACTOME_GASTRULATION

SOX1 SOX2 LHX1 GATA6 ZIC2

6.02e-05129465M46433
PathwayREACTOME_TRANSCRIPTIONAL_REGULATION_OF_PLURIPOTENT_STEM_CELLS

SOX2 FOXD3 GATA6

1.37e-0431463M27393
PathwayWP_BARDETBIEDL_SYNDROME

DYNC2I2 GLI2 GLI3 ZIC2

1.89e-0488464M45557
PathwayREACTOME_GLI_PROTEINS_BIND_PROMOTERS_OF_HH_RESPONSIVE_GENES_TO_PROMOTE_TRANSCRIPTION

GLI2 GLI3

2.16e-047462M27501
PathwayWP_MECHANISMS_ASSOCIATED_WITH_PLURIPOTENCY

SOX2 FOXD3 GATA6 SMARCA4 CUBN ZIC2

4.12e-04301466MM15983
PathwayBIOCARTA_HSWI_SNF_PATHWAY

SMARCA4 ARID1A

4.61e-0410462MM1532
PathwayREACTOME_FORMATION_OF_THE_POSTERIOR_NEURAL_PLATE

SOX1 SOX2

4.61e-0410462M48036
PathwayREACTOME_POU5F1_OCT4_SOX2_NANOG_REPRESS_GENES_RELATED_TO_DIFFERENTIATION

SOX2 GATA6

4.61e-0410462M27208
PathwayBIOCARTA_HSWI_SNF_PATHWAY

SMARCA4 ARID1A

6.73e-0412462M22006
PathwayREACTOME_POU5F1_OCT4_SOX2_NANOG_ACTIVATE_GENES_RELATED_TO_PROLIFERATION

SOX2 FOXD3

7.94e-0413462M27209
PathwayKEGG_HEDGEHOG_SIGNALING_PATHWAY

GLI2 GLI3 ZIC2

7.99e-0456463M1053
PathwayWP_CELL_LINEAGE_MAP_FOR_NEURONAL_DIFFERENTIATION

SOX2 LHX1 FOXD3 GATA6

8.84e-04132464M48110
PathwayKEGG_MEDICUS_REFERENCE_HEDGEHOG_SIGNALING_PATHWAY

GLI2 GLI3

9.25e-0414462M47414
PathwayWP_PREIMPLANTATION_EMBRYO

SOX2 SMARCA4 DLX2

9.30e-0459463M39579
PathwayWP_DEVELOPMENT_OF_URETERIC_COLLECTION_SYSTEM

LHX1 GLI2 GLI3

9.77e-0460463M40048
PathwayREACTOME_MITF_M_REGULATED_MELANOCYTE_DEVELOPMENT

SOX2 FOXD3 SMARCA4 ARID1A

1.02e-03137464M48232
PathwayWP_HEDGEHOG_SIGNALING_WP47

GLI2 GLI3

1.21e-0316462M39675
PathwayWP_MESODERMAL_COMMITMENT_PATHWAY

SOX2 GATA6 CRTC1 ZIC2

1.53e-03153464M39546
PathwayREACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION

IARS2 DARS2

2.10e-0321462M15096
PathwayWP_GDNFRET_SIGNALING_AXIS

LHX1 GLI3

2.31e-0322462MM15887
PathwayBIOCARTA_VDR_PATHWAY

SMARCA4 ARID1A

2.31e-0322462MM1370
PathwayWP_GDNFRET_SIGNALING_AXIS

LHX1 GLI3

2.52e-0323462M39814
PathwayBIOCARTA_VDR_PATHWAY

SMARCA4 ARID1A

2.75e-0324462M13404
PathwayWP_CILIOPATHIES

DYNC2I2 GLI2 GLI3 ZIC2

2.99e-03184464M39880
Pubmed

A census of human transcription factors: function, expression and evolution.

HOXA3 SOX1 SOX2 HOXB3 FOXD3 SALL2 MTF1 HELT GLI2 GLI3 GATA6 POU3F4 DLX2 ONECUT1 GLIS1 ZIC2 FOXJ1

7.97e-13908661719274049
Pubmed

Sox2 and Pax6 maintain the proliferative and developmental potential of gliogenic neural stem cells In vitro.

SOX1 SOX2 GLI3 POU3F4 DLX2

4.17e-111466521766338
Pubmed

A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract.

SOX2 LHX1 FOXD3 SALL2 MTF1 GLI2 GLI3 TRIM8 GATA6 SMARCA4 POU3F4 ARID1A ONECUT1

7.14e-10709661322988430
Pubmed

Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning.

SOX1 SOX2 GLI2 GLI3

1.48e-09966423249739
Pubmed

The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo.

LHX1 GLI2 GLI3 GATA6 SMARCA4 POU3F4 DLX2 ONECUT1

3.12e-0919166824146773
Pubmed

Proper ciliary assembly is critical for restricting Hedgehog signaling during early eye development in mice.

SOX1 SOX2 GLI2 GLI3

2.76e-081766428778798
Pubmed

Sox2 is required for embryonic development of the ventral telencephalon through the activation of the ventral determinants Nkx2.1 and Shh.

SOX1 SOX2 GLI3 DLX2

2.76e-081766423444355
Pubmed

Cell cycle-related kinase regulates mammalian eye development through positive and negative regulation of the Hedgehog pathway.

SOX1 SOX2 GLI2 GLI3

4.49e-081966429166577
Pubmed

Impact of cytosine methylation on DNA binding specificities of human transcription factors.

LHX1 FOXD3 MTF1 GLI2 GLI3 GATA6 POU3F4 DLX2 ONECUT1 GLIS1

7.77e-08544661028473536
Pubmed

Deterministic and stochastic allele specific gene expression in single mouse blastomeres.

SOX1 SOX2 HDAC9 LHX1 FOXD3 GLI2 GLI3 GATA6 ONECUT1

1.10e-0742466921731673
Pubmed

RNF220-mediated ubiquitination promotes aggresomal accumulation and autophagic degradation of cytoplasmic Gli via HDAC6.

GLI2 GLI3 GLIS1

1.30e-07666333895473
Pubmed

A novel gene, GliH1, with homology to the Gli zinc finger domain not required for mouse development.

GLI2 GLI3 GLIS1

1.30e-07666312385751
Pubmed

Physical and functional interactions between Zic and Gli proteins.

GLI2 GLI3 ZIC2

1.30e-07666311238441
Pubmed

Vsx1 Transiently Defines an Early Intermediate V2 Interneuron Precursor Compartment in the Mouse Developing Spinal Cord.

SOX1 LHX1 FOXD3 ONECUT1

1.71e-072666428082864
Pubmed

Transcriptional regulatory networks in epiblast cells and during anterior neural plate development as modeled in epiblast stem cells.

SOX1 SOX2 POU3F4 ZIC2

1.71e-072666422992956
Pubmed

Basal Suppression of the Sonic Hedgehog Pathway by the G-Protein-Coupled Receptor Gpr161 Restricts Medulloblastoma Pathogenesis.

SOX2 GLI2 GLI3 ZIC2

2.01e-072766429386106
Pubmed

Interplay of SOX and POU factors in regulation of the Nestin gene in neural primordial cells.

SOX1 SOX2 POU3F4

2.27e-07766315456859
Pubmed

A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification.

SOX2 GLI2 GLI3 GATA6

2.71e-072966427320915
Pubmed

Suppressor of fused controls cerebellar neuronal differentiation in a manner modulated by GLI3 repressor and Fgf15.

SOX1 SOX2 GLI2 GLI3

3.12e-073066428560839
Pubmed

Prospective separation and transcriptome analyses of cortical projection neurons and interneurons based on lineage tracing by Tbr2 (Eomes)-GFP/Dcx-mRFP reporters.

SOX1 SOX2 DLX2

3.63e-07866326248544
Pubmed

The Eyes Absent family members EYA4 and EYA1 promote PLK1 activation and successful mitosis through tyrosine dephosphorylation.

PRR12 ATXN2L AMOT TRIM8 UNG JMJD1C

4.62e-0715266638360978
Pubmed

Derepression of sonic hedgehog signaling upon Gpr161 deletion unravels forebrain and ventricular abnormalities.

SOX2 GLI2 GLI3 FOXJ1

4.64e-073366430914320
Pubmed

The BAF chromatin complex component SMARCC1 does not mediate GLI transcriptional repression of Hedgehog target genes in limb buds.

GLI3 SMARCA4 ARID1A

5.44e-07966337805104
Pubmed

Identification of the SOX2 Interactome by BioID Reveals EP300 as a Mediator of SOX2-dependent Squamous Differentiation and Lung Squamous Cell Carcinoma Growth.

SOX2 PRR12 SMARCA4 ARID1A JMJD1C

5.46e-078366528794006
Pubmed

Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus.

HOXA3 SOX2 LHX1 HOXB3 FOXD3 POU3F4 ONECUT1

6.95e-0726366720932939
Pubmed

An atlas of combinatorial transcriptional regulation in mouse and man.

HOXA3 SOX2 HDAC9 LHX1 MTF1 GLI3 GATA6 POU3F4 DLX2 ZIC2 FOXJ1

7.47e-07877661120211142
Pubmed

CD spectra show the relational style between Zic-, Gli-, Glis-zinc finger protein and DNA.

GLI2 GLI3 ZIC2

7.76e-071066318298960
Pubmed

Sufu- and Spop-mediated regulation of Gli2 is essential for the control of mammalian cochlear hair cell differentiation.

SOX2 GLI2 GLI3

1.07e-061166336252002
Pubmed

Analysis of early ventral telencephalic defects in mice lacking functional Gli3 protein.

LHX1 GLI3 DLX2

1.42e-061266319048639
Pubmed

Neuronal migration and ventral subtype identity in the telencephalon depend on SOX1.

SOX1 SOX2 POU3F4

1.42e-061266315882093
Pubmed

Onecut transcription factors are required for the second phase of development of the A13 dopaminergic nucleus in the mouse.

LHX1 DLX2 ONECUT1

1.84e-061366322102297
Pubmed

Hedgehog signaling regulates sensory cell formation and auditory function in mice and humans.

SOX2 GLI2 GLI3

1.84e-061366318632939
Pubmed

The emergent landscape of the mouse gut endoderm at single-cell resolution.

HOXA3 SOX2 LHX1 GATA6

2.16e-064866430959515
Pubmed

Tet proteins influence the balance between neuroectodermal and mesodermal fate choice by inhibiting Wnt signaling.

SOX1 SOX2 TET3

2.92e-061566327930333
Pubmed

Teeth. Where and how to make them.

GLI2 GLI3 DLX2

2.92e-061566310098408
Pubmed

Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes.

SOX2 SALL2 SMARCA4 ARID1A

3.23e-065366421532573
Pubmed

Coupling bimolecular PARylation biosensors with genetic screens to identify PARylation targets.

CTIF TNKS2

3.55e-06266229789535
Pubmed

Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage.

SOX2 FOXD3

3.55e-06266220621055
Pubmed

Sox2 gene regulation via the D1 enhancer in embryonic neural tube and neural crest by the combined action of SOX2 and ZIC2.

SOX2 ZIC2

3.55e-06266231997540
Pubmed

A novel protein-processing domain in Gli2 and Gli3 differentially blocks complete protein degradation by the proteasome.

GLI2 GLI3

3.55e-06266217283082
Pubmed

New mouse models of congenital anorectal malformations.

GLI2 GLI3

3.55e-06266210693670
Pubmed

SOX 1, contrary to SOX 2, suppresses proliferation, migration, and invasion in human laryngeal squamous cell carcinoma by inhibiting the Wnt/β-catenin pathway.

SOX1 SOX2

3.55e-06266226040764
Pubmed

Differential effects of GLI2 and GLI3 in regulating cervical cancer malignancy in vitro and in vivo.

GLI2 GLI3

3.55e-06266229967343
Pubmed

Kinetics of hedgehog-dependent full-length Gli3 accumulation in primary cilia and subsequent degradation.

GLI2 GLI3

3.55e-06266220154143
Pubmed

Tumor progression by epithelial-mesenchymal transition in ARID1A- and SMARCA4-aberrant solid-type poorly differentiated gastric adenocarcinoma.

SMARCA4 ARID1A

3.55e-06266234997313
Pubmed

Independent regulation of initiation and maintenance phases of Hoxa3 expression in the vertebrate hindbrain involve auto- and cross-regulatory mechanisms.

HOXA3 HOXB3

3.55e-06266211566863
Pubmed

Normal exon copy number of the GLI2 and GLI3 genes in patients with esophageal atresia.

GLI2 GLI3

3.55e-06266223442119
Pubmed

SOX2 promotes hypoxia-induced breast cancer cell migration by inducing NEDD9 expression and subsequent activation of Rac1/HIF-1α signaling.

SOX2 NEDD9

3.55e-06266231462898
Pubmed

Gli2 is a novel regulator of sox2 expression in telencephalic neuroepithelial cells.

SOX2 GLI2

3.55e-06266218927476
Pubmed

Adult Gli2+/-;Gli3Δ699/+ Male and Female Mice Display a Spectrum of Genital Malformation.

GLI2 GLI3

3.55e-06266227814383
Pubmed

Mass spectrometric analysis of the phosphorylation levels of the SWI/SNF chromatin remodeling/tumor suppressor proteins ARID1A and Brg1 in ovarian clear cell adenocarcinoma cell lines.

SMARCA4 ARID1A

3.55e-06266225083560
Pubmed

Coffin-Siris syndrome in two chinese patients with novel pathogenic variants of ARID1A and SMARCA4.

SMARCA4 ARID1A

3.55e-06266235353340
Pubmed

A study on etiology of incontinence in double knockout mouse model.

GLI2 GLI3

3.55e-06266236272934
Pubmed

GLI3 repressor but not GLI3 activator is essential for mouse eye patterning and morphogenesis.

SOX1 SOX2 GLI3

3.59e-061666330953627
Pubmed

The Onecut Transcription Factors Regulate Differentiation and Distribution of Dorsal Interneurons during Spinal Cord Development.

LHX1 FOXD3 ONECUT1

3.59e-061666328603487
Pubmed

Prediction of the coding sequences of mouse homologues of KIAA gene: IV. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries.

PRUNE2 HDAC9 PRR12 TNRC18 CTIF DHTKD1 JMJD1C CCDC85A

4.30e-0649366815368895
Pubmed

Expression of the dominant negative retinoid receptor, RAR403, alters telencephalic progenitor proliferation, survival, and cell fate specification.

LHX1 GLI3 DLX2

4.35e-061766318329011
Pubmed

Contribution of Hox genes to the diversity of the hindbrain sensory system.

HOXA3 LHX1 HOXB3

4.35e-061766314960494
Pubmed

The p75 neurotrophin receptor is required for the survival of neuronal progenitors and normal formation of the basal forebrain, striatum, thalamus and neocortex.

LHX1 HELT DLX2

5.22e-061866331488566
Pubmed

Murine inner cell mass-derived lineages depend on Sall4 function.

SOX2 SALL2 GATA6

5.22e-061866317060609
Pubmed

Gli3 is required for the specification and differentiation of preplate neurons.

SOX2 GLI3 DLX2

6.19e-061966316168404
Pubmed

Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog.

GLI2 GLI3 DLX2

6.19e-061966332234482
Pubmed

ASPP2 maintains the integrity of mechanically stressed pseudostratified epithelia during morphogenesis.

SOX2 AMOT GATA6

6.19e-061966335177595
Pubmed

Post-gastrulation synthetic embryos generated ex utero from mouse naive ESCs.

SOX1 SOX2 GATA6

6.19e-061966335988542
Pubmed

Patterning of ventral telencephalon requires positive function of Gli transcription factors.

GLI2 GLI3 DLX2

7.27e-062066319632216
Pubmed

Loss of dynein-2 intermediate chain Wdr34 results in defects in retrograde ciliary protein trafficking and Hedgehog signaling in the mouse.

DYNC2I2 GLI2 GLI3

7.27e-062066328379358
Pubmed

An epigenetic circuit controls neurogenic programs during neocortex development.

SOX2 SMARCA4 ARID1A

7.27e-062066335020876
Pubmed

Cyp26b1 is an essential regulator of distal airway epithelial differentiation during lung development.

SOX2 GLI2 GLI3 FOXJ1

7.34e-066566432001436
Pubmed

Tcf7l1 protects the anterior neural fold from adopting the neural crest fate.

SOX1 SOX2 FOXD3

8.47e-062166327302397
Pubmed

Distinct requirements for Ascl1 in subpopulations of midbrain GABAergic neurons.

SOX2 LHX1 HELT

8.47e-062166320417196
Pubmed

Ascl1 and Helt act combinatorially to specify thalamic neuronal identity by repressing Dlxs activation.

SOX2 HELT DLX2

8.47e-062166325512300
Pubmed

Temporal and spatial requirements of Smoothened in ventral midbrain neuronal development.

SOX2 GLI2 GLI3

8.47e-062166323618354
Pubmed

Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis.

SOX2 GLI2 GLI3

8.47e-062166332855417
Pubmed

ATMIN is a transcriptional regulator of both lung morphogenesis and ciliogenesis.

DYNC2I2 GLI3 FOXJ1

9.80e-062266325294941
Pubmed

Requirement for Foxd3 in maintaining pluripotent cells of the early mouse embryo.

SOX2 LHX1 FOXD3

9.80e-062266312381664
Pubmed

Embryo model completes gastrulation to neurulation and organogenesis.

SOX1 SOX2 GATA6

9.80e-062266336007540
Pubmed

Lhx2 regulates the development of the forebrain hem system.

LHX1 DLX2 ZIC2

9.80e-062266323307637
Pubmed

The microenvironment patterns the pluripotent mouse epiblast through paracrine Furin and Pace4 proteolytic activities.

SOX1 LHX1 FOXD3

9.80e-062266321896659
Pubmed

Identification and functional characterization of transcriptional activators in human cells.

PRR12 TNRC18 DYRK1A SMARCA4 TNKS2 ARID1A JMJD1C

1.06e-0539866735016035
Pubmed

Murine models of VACTERL syndrome: Role of sonic hedgehog signaling pathway.

GLI2 GLI3

1.06e-05366211172440
Pubmed

Involvement of Sox1, 2 and 3 in the early and subsequent molecular events of lens induction.

SOX1 SOX2

1.06e-0536629609835
Pubmed

Fuzzy modeling reveals a dynamic self-sustaining network of the GLI transcription factors controlling important metabolic regulators in adult mouse hepatocytes.

GLI2 GLI3

1.06e-05366226010061
Pubmed

The role of GLI-SOX2 signaling axis for gemcitabine resistance in pancreatic cancer.

SOX2 GLI2

1.06e-05366230382189
Pubmed

Active demethylation in mouse zygotes involves cytosine deamination and base excision repair.

UNG TET3

1.06e-05366224279473
Pubmed

Mice with targeted disruptions in the paralogous genes hoxa-3 and hoxd-3 reveal synergistic interactions.

HOXA3 HOXB3

1.06e-0536627913519
Pubmed

Ground-state transcriptional requirements for skin-derived precursors.

SOX2 FOXD3

1.06e-05366223316968
Pubmed

The CRTC1-NEDD9 signaling axis mediates lung cancer progression caused by LKB1 loss.

NEDD9 CRTC1

1.06e-05366223074285
Pubmed

Conserved and distinct roles of kreisler in regulation of the paralogous Hoxa3 and Hoxb3 genes.

HOXA3 HOXB3

1.06e-0536629895323
Pubmed

ARID1A, BRG1, and INI1 deficiency in undifferentiated and dedifferentiated endometrial carcinoma: a clinicopathologic, immunohistochemical, and next-generation sequencing analysis of a case series from a single institution.

SMARCA4 ARID1A

1.06e-05366236252860
Pubmed

Expression of Sox1, Sox2 and Sox9 is maintained in adult human cerebellar cortex.

SOX1 SOX2

1.06e-05366219061938
Pubmed

Pou3f4-expressing otic mesenchyme cells promote spiral ganglion neuron survival in the postnatal mouse cochlea.

SOX2 POU3F4

1.06e-05366231994726
Pubmed

Dual role of Brg chromatin remodeling factor in Sonic hedgehog signaling during neural development.

GLI3 SMARCA4

1.06e-05366221768360
Pubmed

DYRK1A Negatively Regulates CDK5-SOX2 Pathway and Self-Renewal of Glioblastoma Stem Cells.

SOX2 DYRK1A

1.06e-05366233924599
Pubmed

Gli family members are differentially expressed during the mitotic phase of spermatogenesis.

GLI2 GLI3

1.06e-0536629178901
Pubmed

Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers.

GLI2 GLI3

1.06e-0536628378770
Pubmed

ARID1A, a factor that promotes formation of SWI/SNF-mediated chromatin remodeling, is a tumor suppressor in gynecologic cancers.

SMARCA4 ARID1A

1.06e-05366221900401
Pubmed

Sox2-Deficient Müller Glia Disrupt the Structural and Functional Maturation of the Mammalian Retina.

SOX1 SOX2

1.06e-05366227031842
Pubmed

Distinct SoxB1 networks are required for naïve and primed pluripotency.

SOX1 SOX2

1.06e-05366229256862
Pubmed

OCT4 cooperates with distinct ATP-dependent chromatin remodelers in naïve and primed pluripotent states in human.

SOX2 SMARCA4

1.06e-05366234446700
Pubmed

Clinicopathological and prognostic significance of SWI/SNF complex subunits in undifferentiated gastric carcinoma.

SMARCA4 ARID1A

1.06e-05366236464671
InteractionGLI3 interactions

SOX2 THSD4 GLI2 GLI3 SMARCA4 ZIC2

8.13e-0798666int:GLI3
InteractionSOX7 interactions

PRR12 TNRC18 SMARCA4 ARID1A JMJD1C

7.25e-0682665int:SOX7
InteractionALX4 interactions

HOXA3 SOX2 POU3F4 DLX2

1.83e-0548664int:ALX4
InteractionING1 interactions

SOX2 TNRC18 SALL2 SMARCA4 ARID1A

2.21e-05103665int:ING1
InteractionRNF138 interactions

ATXN2L TRIM8 SMARCA4 ARID1A CCDC85A

5.59e-05125665int:RNF138
InteractionCNOT3 interactions

SOX2 ATXN2L GLI2 GLI3 DYRK1A NBEA

5.94e-05207666int:CNOT3
InteractionRSPO2 interactions

SOX2 CATSPER1 ZNRF3

6.46e-0524663int:RSPO2
Cytoband10p12.31

MALRD1 CUBN

4.62e-042266210p12.31
Cytoband15q23

THSD4 KIF23

1.85e-034466215q23
Cytoband9q34.11

DYNC2I2 COQ4

2.68e-03536629q34.11
GeneFamilyATP binding cassette subfamily A

ABCA1 ABCA12

5.41e-0414452805
GeneFamilySRY-boxes

SOX1 SOX2

1.01e-0319452757
GeneFamilyForkhead boxes

FOXD3 FOXJ1

5.13e-0343452508
GeneFamilyHOXL subclass homeoboxes

HOXA3 HOXB3

7.42e-0352452518
GeneFamilyUbiquitin specific peptidases

USP53 USP9Y

8.57e-0356452366
CoexpressionBENPORATH_EED_TARGETS

HOXA3 SOX1 HOXB3 FOXD3 VGLL2 AMOT GATA6 POU3F4 DLX2 ARID1A ONECUT1 JMJD1C DARS2 ZIC2 FOXJ1

4.39e-0810596615M7617
CoexpressionMEISSNER_BRAIN_HCP_WITH_H3K4ME3_AND_H3K27ME3

SOX1 SOX2 KIF23 SULF2 GLI2 GLI3 GATA6 DLX2 ARHGEF17 ONECUT1 GLIS1 ZIC2 FOXJ1

2.32e-0610746613M1941
CoexpressionATF2_S_UP.V1_UP

KIF23 COQ4 UNG CUBN USP9Y FOXJ1

9.28e-06193666M2682
CoexpressionGROSS_HIF1A_TARGETS_DN

SOX2 HELT PGM1

3.80e-0526663M1307
CoexpressionLI_ESTROGENE_LATE_E2_RESPONSE_DN

HDAC9 ABCA1 NBEA DLX2

5.02e-0580664M48218
ToppCellFetal_brain-organoid_Tanaka_cellReport-GW10-Macroglial-Astrocyte|GW10 / Sample Type, Dataset, Time_group, and Cell type.

SOX1 SOX2 NEDD9 ZNRF3 GLI3 TNKS2

5.21e-0720066698a994692440cb4f505b050276f0c8022c814a21
ToppCellFetal_brain-organoid_Tanaka_cellReport-GW10-Macroglial|GW10 / Sample Type, Dataset, Time_group, and Cell type.

SOX1 SOX2 NEDD9 ZNRF3 GLI3 TNKS2

5.21e-07200666ef222dc4a205d670172dae74990bdb952ac92e5b
ToppCellfacs-Lung-18m-Endothelial-arterial_endothelial-pulmonary_artery_endothelial_cell-pulmonary_artery_endothelial_cell_l27|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

PRUNE2 ABCA1 GATA6 HID1 CUBN

6.55e-06177665d68132e145bd413404fdbe215b5dbe520e756e50
ToppCellrenal_cortex_nuclei-Adult_normal_reference-Epithelial-Proximal_tubule_epithelial_cell-kidney_proximal_tubule_epithelial_cell-Proximal_Tubule_Epithelial_Cell_Segment_1_/_Segment_2|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

PRUNE2 ANK2 CUBN DHTKD1 GLIS1

7.11e-06180665f8bdfd7bf7b3d52c659a29d8f5f80858e79da83e
ToppCellAdult-Mesenchymal-matrix_fibroblast_2_cell|Adult / Lineage, Cell type, age group and donor

RGMA HOXB3 ANK2 GLI2 GLI3

9.72e-06192665d21f0f577156f17c899b08871046a26b88aea011
ToppCellChildren_(3_yrs)-Mesenchymal-matrix_fibroblast_2_cell-D032|Children_(3_yrs) / Lineage, Cell type, age group and donor

HOXA3 ANK2 GLI2 GLI3 GATA6

1.05e-05195665ff0aa455e9844a6d7ae57ff59fb6cea825cf1fc2
ToppCell3'-GW_trimst-1-SmallIntestine-Neuronal-neuron_precursor|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 HOXB3 FOXD3 NBEA DLX2

1.10e-051976651378bf90a4b80b8166ef352c282ce51b114ba693
ToppCell3'-GW_trimst-1-SmallIntestine-Neuronal|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 FOXD3 ANK2 NBEA DLX2

1.16e-0519966586739a6f5e0fa7448389b97b3c4de41f2a7d7ebd
ToppCellwk_08-11-Epithelial-Airway_epithelial_progenitor|wk_08-11 / Celltypes from embryonic and fetal-stage human lung

SOX2 NEDD9 MISP HID1 FOXJ1

1.16e-05199665af664e0d41a889a75dbf6cf0d50acd26f5ab3a3a
ToppCell3'-GW_trimst-1-LargeIntestine-Neuronal|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 FOXD3 ANK2 NBEA DLX2

1.18e-05200665553e9612874480f4d2a45671462e266cd0a09321
ToppCellBrain_organoid-organoid_Tanaka_cellReport-1m-Neuronal-Interneuron|1m / Sample Type, Dataset, Time_group, and Cell type.

HOXA3 LHX1 HOXB3 DLX2 ONECUT1

1.18e-05200665fc839e9c33ea1d4ee0f42f21fd32a54e7cbe1f5a
ToppCell343B-Epithelial_cells-Epithelial-E_(AT2)-|343B / Donor, Lineage, Cell class and subclass (all cells)

MISP TNRC18 MALRD1 GLI2

6.39e-0514566480684ec249fa445c1b35f94608a4a6824d53f2d9
ToppCell343B-Epithelial_cells-Epithelial-E_(AT2)|343B / Donor, Lineage, Cell class and subclass (all cells)

MISP TNRC18 MALRD1 GLI2

6.39e-05145664cb534333fba44b241b14fb0d7b74e843f4e7f9f8
ToppCellCerebellum-Macroglia-ASTROCYTE|Cerebellum / BrainAtlas - Mouse McCarroll V32

SOX1 SOX2 GLI2 POU3F4

7.47e-0515166471841d2001200d1595c85c2b007ee20791a72927
ToppCellCerebellum-Macroglia-ASTROCYTE-Gja1|Cerebellum / BrainAtlas - Mouse McCarroll V32

SOX1 SOX2 GLI2 POU3F4

7.47e-0515166460aced0c1cc6b509b73308d03d58a3c44d712ef4
ToppCell10x5'-bone_marrow-Lymphocytic_Invariant-Inducer-like-ILC3|bone_marrow / Manually curated celltypes from each tissue

HOXA3 KIF23 GLI3 TTLL10

8.27e-0515566483430a64c2cb5ad29caa3dacba76c28dd204ac40
ToppCellcellseq2-Epithelial-Epithelial_Neuro-Secretory-Ionocyte|cellseq2 / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2

MISP SALL2 ANK2 GLI3

9.35e-051606649049707a4487f2337a17976ceb5fbd8815ab9e1d
ToppCellcellseq2-Epithelial-Epithelial_Neuro-Secretory-Ionocyte-Ionocyte|cellseq2 / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2

MISP SALL2 ANK2 GLI3

9.35e-05160664f2cfec54cf48a655f473b830be7d141c54b521ff
ToppCellBL-critical-LOC-Epithelial-FOXN4+|LOC / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

RGMA AMOT GATA6 FOXJ1

9.35e-051606643f737451d5713deed20061aa72a9ef77a9a2bc06
ToppCellcellseq2-Epithelial-Epithelial_Neuro-Secretory|cellseq2 / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2

MISP SALL2 ANK2 GLI3

9.35e-051606640eb50b3c494e1b65d40104b3b5411b57bb72b959
ToppCell3'-GW_trimst-1.5-LargeIntestine-Neuronal-neuron_precursor|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 HOXB3 FOXD3 DLX2

1.00e-0416366499cf60dc87f7ce288553091bffcd85109a02bd8f
ToppCell3'-GW_trimst-1.5-LargeIntestine-Neuronal-neuron_precursor-Neuroblast|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 HOXB3 FOXD3 DLX2

1.00e-04163664510c0af66e82c5a8cf8edd0547dae4018a87dbbf
ToppCell367C-Myeloid-Macrophage-FABP4+_Macrophage_3|Macrophage / Donor, Lineage, Cell class and subclass (all cells)

HOXA3 SALL2 GLI3 CCDC85A

1.10e-041676645c82d801e3b7d7c6c967a73b94b2ee2a8da1fd6e
ToppCell5'-Parenchyma_lung-Epithelial-Epithelial_transtional-secretory-nasal_mucosa_goblet_cell-Goblet_(nasal)-Goblet_(nasal)_L.0.2.0.0|5' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

THSD4 HOXB3 MISP HID1

1.10e-04167664d1a13d6ada572d8ddb2da95e6e122d2b705fad7f
ToppCell3'-GW_trimst-1.5-SmallIntestine-Neuronal-Glial_immature-Glia_2_(ELN+)|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 USP53 FOXD3 DLX2

1.13e-04168664af82e07d1eec51fc6530155f37addbce6221885d
ToppCellTCGA-Thryoid-Primary_Tumor-Thyroid_Papillary_Carcinoma-Classical-8|TCGA-Thryoid / Sample_Type by Project: Shred V9

ABCA1 CRTC1 ARHGEF17 TET3

1.13e-0416866400646601548b0fee42ae16bfa5e93603bc7c5129
ToppCellwk_15-18-Mesenchymal-Fibroblast-Mesenchymal_3|wk_15-18 / Celltypes from embryonic and fetal-stage human lung

THSD4 SULF2 AMOT NBEA

1.26e-04173664b43817a6b1ed8d6b5366702343be4311c0d52d83
ToppCell390C-Myeloid-Macrophage-M2-like_Macrophage_(MARCO_negative)|Myeloid / Donor, Lineage, Cell class and subclass (all cells)

PRUNE2 LHX1 MISP SALL2

1.26e-041736641f725ff16e28636b20ef26f3fa9be8b47c89378d
ToppCellCOVID-19-kidney-REN+Pericyte|COVID-19 / Disease (COVID-19 only), tissue and cell type

HOXA3 HDAC9 NBEA ARHGEF17

1.29e-041746648393f0b43c767839c1630bcb952d62b42efc788d
ToppCellILEUM-inflamed-(9)_Enteric_neurons|inflamed / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)

SOX2 FOXD3 ANK2 DCHS1

1.41e-04178664d9142151819afb0dc22bfb32a9c9dba5f553067d
ToppCellrenal_cortex_nuclei-Adult_normal_reference-Epithelial-Distal_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell-Medullary_Thick_Ascending_Limb_Cell|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

USP53 KIF23 MALRD1 ANK2

1.41e-041786644df6218b20c2f076c22346d23260964cc0d73e65
ToppCellILEUM-inflamed-(9)_Neuro_cell|inflamed / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)

SOX2 FOXD3 ANK2 DCHS1

1.41e-04178664611504b0a9e6318b18fba83787b03f9245c82252
ToppCellSomatosensory_Cortex_(S1)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_2-Inh_L1-6_VIP_RGS16|Somatosensory_Cortex_(S1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX1 SULF2 POU3F4 DLX2

1.44e-041796645bf191bdc0c32bce83ab5c38f0616e209e420e55
ToppCell3'-GW_trimst-2-SmallIntestine-Neuronal-Glial_immature-Glia_1_(DHH+)|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

USP53 FOXD3 DLX2 PGM1

1.47e-0418066438490017dd590e3fcfa7e88d8d15235d55f90cf1
ToppCell5'-GW_trimst-1.5-LargeIntestine-Neuronal-Glial_immature-cycling_ENCC/glia|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX1 SOX2 FOXD3 DLX2

1.50e-04181664f2ebeb4941510c4b6e50f2379c574d1778d6ced1
ToppCelldroplet-Lung-21m-Endothelial-arterial_endothelial-pulmonary_artery_endothelial_cell|21m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

HOXA3 PRUNE2 DCHS1 GATA6

1.54e-04182664c7f2d24697affa530b748ab32b1d40bdc1bdc20a
ToppCelldroplet-Lung-21m-Endothelial-arterial_endothelial|21m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

HOXA3 PRUNE2 DCHS1 GATA6

1.54e-04182664d95635b74e8cd8bc00bfe40340806b59fb9bee43
ToppCellPCW_05-06-Epithelial-Epithelial_neuroendo-epi_neuroendocrine2[NE2]_(12)|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung

SOX1 SOX2 HID1 TTLL10

1.54e-04182664dc29e8735c3562ce32322351d28f7d9709208ebf
ToppCellCOVID-19-kidney-Distal_Epi_Doublet_(PCT)|COVID-19 / Disease (COVID-19 only), tissue and cell type

PRUNE2 LHX1 CUBN GLIS1

1.54e-041826649d67717a6e13bcb54c1297a3e4e3abf4e51628a3
ToppCellGlobus_pallidus-Neuronal-Excitatory-eN3(Slc17a7_Gad1Gad2)-Slc17a6|Globus_pallidus / BrainAtlas - Mouse McCarroll V32

LHX1 HOXB3 ONECUT1

1.54e-0470663677deb7c7c100756a4cdc788d61feb45039a9a97
ToppCellfacs-Brain_Non-Myeloid-Cerebellum_-18m-Epithelial-Bergmann_glial_cell|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SOX1 RGMA GLI2 GLI3

1.57e-0418366499bb4ceb92f6467f2359a42ab2cff6df18825a30
ToppCelldroplet-Lung-immune-endo-depleted-3m-Myeloid-Proliferating_Alveolar_Macrophage|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

PRUNE2 KIF23 SULF2 UNG

1.57e-0418366442dc31d587fbb9724b2f0be5ee8ed77233f67b86
ToppCelldroplet-Heart-4Chambers-18m-Neuronal-cardiac_neuron|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

FOXD3 DLX2 ONECUT1 FOXJ1

1.60e-041846646388c47b7f1d8203e3069eba0e74107256dcae51
ToppCelldroplet-Lung-21m-Endothelial-arterial_endothelial-pulmonary_artery_endothelial_cell-pulmonary_artery_endothelial_cell_l25|21m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

HOXA3 PRUNE2 GATA6 CUBN

1.60e-04184664087666ba949b129c53d7ace40f9e543e3875a7de
ToppCellwk_15-18-Epithelial-Proximal_epithelial-intermediate_neuroendocrine|wk_15-18 / Celltypes from embryonic and fetal-stage human lung

SOX1 SOX2 ANK2 ZIC2

1.60e-041846649e5f98f9113e5e38bdadba6d9d2c346177fb35fe
ToppCell3'-GW_trimst-2-LargeIntestine-Neuronal-Glial_immature|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 USP53 FOXD3 DLX2

1.60e-04184664226ccac00ac1c3a0ad7283785fd14312320e0ca6
ToppCelldroplet-Marrow-nan-3m-Lymphocytic-late_pro-B_cell|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

ZNRF3 DLX2 HID1 CUBN

1.60e-0418466442cadfdb5d29a50bd7e901ddd14d42b39e8474f0
ToppCell5'-GW_trimst-1.5-LargeIntestine-Neuronal-neuron_precursor|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX1 SOX2 FOXD3 DLX2

1.60e-041846647712f2e1fae5cdde2d4e355b860dc8536b28e4f6
ToppCelldroplet-Heart-4Chambers-18m-Neuronal|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

FOXD3 DLX2 ONECUT1 FOXJ1

1.60e-04184664d83ae1dc64aa1b27d3b524c137567418cc0ff8c6
ToppCell3'-Distal_airway-Mesenchymal-Mesenchymal_Myocytic-myocytic_fibroblast-Myofibroblasts-Myofibroblasts_L.2.3.2.0|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

PRUNE2 ANK2 VGLL2 POU3F4

1.63e-041856647b1c5d99bd7a6e148524029758cee244a17f5d09
ToppCell5'-GW_trimst-2-LargeIntestine-Neuronal-Glial_immature-cycling_ENCC/glia|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX1 SOX2 KIF23 DLX2

1.63e-04185664282b3de8850f3c21704339e8d8737b432a43441a
ToppCelldroplet-Lung-3m-Hematologic-myeloid-alveolar_macrophage-proliferating_alveolar_macrophage|3m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

PRUNE2 KIF23 SULF2 UNG

1.63e-0418566457c1eb50a4456d20953e48d5dc3b0ea3d0d81b6d
ToppCell3'-Distal_airway-Mesenchymal-Mesenchymal_Myocytic-myocytic_fibroblast-Myofibroblasts|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

PRUNE2 ANK2 VGLL2 POU3F4

1.63e-04185664e9033a03d574956cf3ae228740b3166e40a6397f
ToppCelldroplet-Liver-Hepatocytes-21m-Endothelial-endothelial_cell_of_hepatic_sinusoid|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

HOXA3 HOXB3 NBEA HID1

1.63e-0418566460206c7322b4ddb2010040aac70561df842c9843
ToppCell5'-GW_trimst-1-SmallIntestine-Neuronal-neuron_precursor-cycling_neuroblast|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 FOXD3 ANK2 DLX2

1.63e-041856640149981d3818a6250f32c08456c28e7037c39d91
ToppCell3'-Distal_airway-Mesenchymal-Mesenchymal_Myocytic-myocytic_fibroblast|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

PRUNE2 ANK2 VGLL2 POU3F4

1.63e-04185664578f12c6b2e33d09598dc8e022a20c8555d1325c
ToppCellPrimary_Visual_cortex_(V1C)-Non-neuronal-Macroglial-Astro-Astrocyte-Astro_L1-6_FGFR3_ETNPPL|Primary_Visual_cortex_(V1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX2 GLI2 GLI3 ZIC2

1.67e-0418666473cf266aeecd3cc15e8cb6094588a393bca8fbe6
ToppCellPCW_07-8.5-Epithelial-Epithelial_neuroendo-epi_neuroendocrine2[NE2]_(12)|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung

SOX1 SOX2 PRUNE2 ZIC2

1.67e-04186664c7983281a290201567b398e9ea6baddb96c692bb
ToppCellrenal_cortex_nuclei-CKD+DKD_normotensive-Epithelial-Proximal_tubule_epithelial_cell-kidney_proximal_tubule_epithelial_cell-Proximal_Tubule_Epithelial_Cell_Segment_1_/_Segment_2|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

PRUNE2 ZNRF3 CUBN GLIS1

1.67e-041866645784d255e9ca449d375d81938d0fbbd8a7eb44f6
ToppCellEntopeduncular-Neuronal-Inhibitory-iN1(Gad1Gad2_Th)-Pvalb|Entopeduncular / BrainAtlas - Mouse McCarroll V32

LHX1 DLX2 ONECUT1

1.67e-04726637877184d5c9dd6d96476d71e7504e58c0b4d0f26
ToppCell3'-GW_trimst-1-LargeIntestine-Neuronal-neuron_precursor-Neuroblast|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 FOXD3 NBEA DLX2

1.70e-04187664dfc2b95d70daf533bc0cc4ce78af9f65dd75a25b
ToppCellAnterior_Cingulate_gyrus_(CgG)-Non-neuronal-Macroglial-Astro-Astrocyte|Anterior_Cingulate_gyrus_(CgG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX2 RGMA GLI2 GLI3

1.70e-04187664dd1d91f101b837bba513f77defa6e6902b2c0570
ToppCellfacs-Brain_Non-Myeloid-Striatum-3m-Epithelial|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

KIF23 HELT POU3F4 DLX2

1.70e-041876644d12c70c8ed922fbc8f7b139145611203735cab4
ToppCellAT1_cells-SSc-ILD_01|World / lung cells shred on cell class, cell subclass, sample id

NEDD9 MISP ANK2 CCDC85A

1.70e-04187664f1dda349335e08dbfc8395d373924037f5ad2fd6
ToppCellrenal_cortex_nuclei-CKD+DKD_normotensive-Epithelial-Proximal_tubule_epithelial_cell-kidney_proximal_tubule_epithelial_cell-Degenerative_Proximal_Tubule_Epithelial_Cell|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

PRUNE2 CUBN DHTKD1 GLIS1

1.70e-041876643ae3b8de1a195d4d5057cf3c64fcdb5f48681ce5
ToppCellAnterior_Cingulate_gyrus_(CgG)-Non-neuronal-Macroglial-Astro|Anterior_Cingulate_gyrus_(CgG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX2 RGMA GLI2 GLI3

1.70e-04187664ae90c263f80c36a410150d499e268d198944a3d9
ToppCellfacs-Brain_Non-Myeloid-Striatum-3m-Epithelial-neuronal_stem_cell|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

KIF23 HELT POU3F4 DLX2

1.70e-04187664e46b49b4053d2d0f3e1d2bcdc380f7f8733cbe07
ToppCellCOVID-19-kidney|COVID-19 / Disease (COVID-19 only), tissue and cell type

PRUNE2 LHX1 CUBN GLIS1

1.70e-04187664d23aae9419d460b78b1d4092d7acd9108a47cfbe
ToppCellfacs-Brain_Non-Myeloid-Striatum-3m-Epithelial-nan|Brain_Non-Myeloid / Brain_Non-Myeloid_Brain_Myeloid - method, tissue, subtissue, age, lineage, cell ontology and free annotation

KIF23 HELT POU3F4 DLX2

1.70e-04187664e851ee46a6b4068a7bd7602ee183c0ace50ee4dd
ToppCell368C-Epithelial_cells-Epithelial-I_(AT1)-|368C / Donor, Lineage, Cell class and subclass (all cells)

MISP DYNC2I2 C19orf18 CCDC85A

1.74e-04188664c74771584b3ba9561a99a54bf55a9203ddf8eff8
ToppCellrenal_papilla_nuclei-Hypertensive_with+without-CKD-Epithelial-Intermediate_tubule_epithelial_cell|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group

PRUNE2 KIF23 SULF2 ZNRF3

1.74e-04188664af740fa78542438fdff627ea1f74f4eee43316be
ToppCell368C-Epithelial_cells-Epithelial-I_(AT1)|368C / Donor, Lineage, Cell class and subclass (all cells)

MISP DYNC2I2 C19orf18 CCDC85A

1.74e-041886649155b9a92496e75646778c025b02947e9e9ec73a
ToppCell5'-GW_trimst-1.5-LargeIntestine-Neuronal-neuron_precursor-cycling_neuroblast|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX1 SOX2 FOXD3 DLX2

1.74e-0418866433afe31b1093d317dc38c324197c6e91bf6c39d3
ToppCell3'-GW_trimst-2-LargeIntestine-Neuronal|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 USP53 FOXD3 DLX2

1.74e-04188664ccd2541892112a7a303f766adf9a7afeb754498c
ToppCellrenal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Mesenchymal-Fibroblast-high_collagen-matrisome_fibroblast|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

THSD4 GLI2 GLI3 GATA6

1.77e-0418966471397e993a77d70b2eeede240bdfc7660b558987
ToppCell3'-GW_trimst-1-LargeIntestine-Neuronal-neuron_precursor-cycling_neuroblast|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 KIF23 NBEA DLX2

1.77e-04189664815afad947ed77a8b03724bf78014799fed34f54
ToppCellrenal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Mesenchymal-Fibroblast-high_collagen-matrisome_fibroblast-|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

THSD4 GLI2 GLI3 GATA6

1.77e-041896644eea4759520c312bd17a681034d8074e47093d2b
ToppCellrenal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Proximal_tubule_epithelial_cell-kidney_proximal_tubule_epithelial_cell|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

PRUNE2 ANK2 CUBN GLIS1

1.77e-04189664204ab61ae606b2d9be0cb6bf6a83a011740693a8
ToppCellrenal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Proximal_tubule_epithelial_cell|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

PRUNE2 ANK2 CUBN GLIS1

1.77e-0418966413fd07cc408a9486f61a7b2c3a132c52d14b438d
ToppCellPrimary_Visual_cortex_(V1C)-Non-neuronal-Macroglial-Astro|Primary_Visual_cortex_(V1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX2 GLI2 GLI3 ZIC2

1.81e-0419066478cc6c28b31de041c24175a98f47da256ecc15a2
ToppCellprimary_auditory_cortex_(A1C)-Non-neuronal-Macroglial-Astro-Astrocyte-Astro_L1-6_FGFR3_ETNPPL|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX2 RGMA GLI2 GLI3

1.81e-041906645c64b727669b23d2a23c8ad1d5d6caab7af37d56
ToppCellAdult-Mesenchymal-matrix_fibroblast_2_cell-D175|Adult / Lineage, Cell type, age group and donor

RGMA ANK2 GLI2 GLI3

1.81e-041906647dcca3469f3a3b70db0420cb94f7765f39492f06
ToppCell3'-Parenchyma_lung-Epithelial-Alveolar_epithelium-type_I_pneumocyte-AT1-AT1_L.0.5.1.1|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

NEDD9 MISP ABCA1 HELT

1.81e-041906648ceb327dc995f4b83b05d5d6630e1294f0cb49bd
ToppCellrenal_medulla_nuclei-Adult_normal_reference|renal_medulla_nuclei / Celltypes from Cells and Nuclei per compartment and clinical group

NEDD9 USP53 ANK2 JMJD1C

1.81e-04190664f1363f7806cfc4f14fbc1b0e8dac2de813a88eee
ToppCellPrimary_Visual_cortex_(V1C)-Non-neuronal-Macroglial-Astro-Astrocyte|Primary_Visual_cortex_(V1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX2 GLI2 GLI3 ZIC2

1.81e-04190664e67d9400467b438592690b23d681e6c2fb8f09fd
ToppCellBrain_organoid-organoid_Paulsen_bioRxiv-3.5_mon-Neuronal-Immature_INs|3.5_mon / Sample Type, Dataset, Time_group, and Cell type.

SOX1 SOX2 POU3F4 DLX2

1.81e-04190664842760bfe0a52e67bad800efa7d99448a4a23ebb
ToppCellrenal_medulla_nuclei-Hypertensive_with+without-CKD-Mesenchymal-Fibroblast-Collagen+matrisome-high_fibroblast|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group

THSD4 GLI2 GLI3 GATA6

1.85e-04191664a6c57627077fa980b7ec1d3894b5f31bfb11b738
ToppCell3'-GW_trimst-1-LargeIntestine-Neuronal-neuron_precursor|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 FOXD3 NBEA DLX2

1.85e-04191664a53616c84178eb6c29b48662358765b082df3f97
ToppCell343B-Endothelial_cells-Endothelial-B_(Artery)|343B / Donor, Lineage, Cell class and subclass (all cells)

SULF2 DCHS1 CUBN CCDC85A

1.85e-0419166427a532a35d9e8822014f581fd56c4ca62e39f8fe
ToppCellwk_08-11-Epithelial-Proximal_epithelial-GHRL+_NE_precursor|wk_08-11 / Celltypes from embryonic and fetal-stage human lung

SOX2 HELT HID1 FOXJ1

1.85e-04191664f0a81f621e63e87ff62224b33cf0c71dfac1d6e2
ToppCellrenal_medulla_nuclei-Hypertensive_with+without-CKD-Mesenchymal-Fibroblast-Collagen+matrisome-high_fibroblast-|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group

THSD4 GLI2 GLI3 GATA6

1.85e-041916648f6d592edc32fdb901af30501d4360512334e8c2
ToppCell343B-Endothelial_cells-Endothelial-B_(Artery)-|343B / Donor, Lineage, Cell class and subclass (all cells)

SULF2 DCHS1 CUBN CCDC85A

1.85e-041916641dfcff08e01e6a695953334342bcfde04ba005ad
ToppCell5'-GW_trimst-1-SmallIntestine-Neuronal-neuron_precursor|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 FOXD3 ANK2 DLX2

1.88e-041926643fc7a661ef39286abfd82ed8ab580011f01cb8fd
ToppCellrenal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Mesenchymal-Fibroblast|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

THSD4 GLI2 GLI3 GATA6

1.88e-041926645105e4b577408b4e1a62d0a44c23c2b830ccad88
ToppCellprimary_auditory_cortex_(A1C)-Non-neuronal-Macroglial-Astro-Astrocyte|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX2 RGMA GLI2 GLI3

1.88e-04192664f7e4509003d71f805b9d4587098e90d2897b6739
ToppCellChildren_(3_yrs)-Mesenchymal-matrix_fibroblast_2_cell-D046|Children_(3_yrs) / Lineage, Cell type, age group and donor

RGMA ANK2 GLI2 GLI3

1.88e-04192664e0f4e4470a71bfa81d9dcd8594e5f82aafc24f81
ToppCellprimary_auditory_cortex_(A1C)-Non-neuronal-Macroglial-Astro|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

SOX2 RGMA GLI2 GLI3

1.88e-04192664705ce805cb00a53793b57bcf466d0fbec590a83c
ToppCell5'-GW_trimst-1.5-SmallIntestine-Neuronal-Glial_immature-Glia_1_(DHH+)|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 USP53 FOXD3 DLX2

1.92e-041936643ea6b103e35bbb276e95301999618558fa3e38b1
ToppCell5'-GW_trimst-1-SmallIntestine-Neuronal-Glial_immature-cycling_ENCC/glia|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SOX2 FOXD3 ANK2 DLX2

1.92e-041936644f4f430d7e1b65e19ca829f55ca93edeb6c1c85d
ToppCell21-Trachea-Epithelial-Epithelial|Trachea / Age, Tissue, Lineage and Cell class

SOX1 ANK2 DLX2 ZIC2

1.92e-041936649a8bb44a37f3202e3123a6680bd5545dc91a6d40
DiseaseColorectal Carcinoma

ABCA1 ANK2 ABCA12 GLI3 DCHS1 UNG CUBN TTLL10 ARID1A PGM1

3.00e-067026510C0009402
DiseaseThoracic Neoplasms

SOX2 SMARCA4

4.78e-062652C0039981
Diseasewaist-hip ratio

THSD4 NEDD9 PRUNE2 ABCA1 ZNRF3 VGLL2 GLI3 TRIM8 CRTC1 ONECUT1 JMJD1C LACTBL1

1.32e-0512266512EFO_0004343
DiseaseMENTAL RETARDATION, AUTOSOMAL DOMINANT 12

SMARCA4 ARID1A

4.76e-055652C3281201
DiseaseKlatskin's tumor (is_implicated_in)

GATA6 ARID1A

4.76e-055652DOID:4927 (is_implicated_in)
Diseaseprimary bacterial infectious disease (implicated_via_orthology)

GLI2 GLI3

1.70e-049652DOID:0050338 (implicated_via_orthology)
Diseasefree cholesterol in large LDL measurement

ABCA1 SMARCA4 JMJD1C

1.97e-0451653EFO_0022176
DiseaseHoloprosencephaly sequence

GLI2 ZIC2

2.13e-0410652cv:C0079541
Diseasepremature ejaculation

SULF2 LACTBL1

2.13e-0410652EFO_0803321
DiseaseGlobal developmental delay

PRR12 TRIM8 NBEA TET3

2.16e-04133654C0557874
DiseaseIschemic stroke, fibrinogen measurement

HDAC9 ATXN2L JMJD1C

2.47e-0455653EFO_0004623, HP_0002140
Diseasevery low density lipoprotein cholesterol measurement

ABCA1 SMARCA4 TNKS2 ARID1A JMJD1C

2.74e-04260655EFO_0008317
Diseasestroke

HDAC9 ANK2 DYRK1A SMARCA4

2.92e-04144654EFO_0000712
Diseaseforced expiratory volume

HOXA3 THSD4 HDAC9 ATXN2L HOXB3 ARHGEF17 ONECUT1 JMJD1C

3.32e-04789658EFO_0004314
DiseaseColorectal Neoplasms

ABCA1 ABCA12 UNG ARID1A PGM1

3.67e-04277655C0009404
DiseaseCoffin-Siris syndrome

SMARCA4 ARID1A

3.67e-0413652C0265338
DiseaseAdenocarcinoma Of Esophagus

CRTC1 ARID1A

4.27e-0414652C0279628
DiseaseSarcoma, Spindle Cell

SOX2 SMARCA4

4.27e-0414652C0205945
DiseaseSarcoma, Epithelioid

SOX2 SMARCA4

4.27e-0414652C0205944
Diseasevery low density lipoprotein cholesterol measurement, phospholipids:total lipids ratio

ABCA1 SULF2 SMARCA4 ARID1A JMJD1C

4.59e-04291655EFO_0008317, EFO_0020946
DiseaseAlobar Holoprosencephaly

GLI2 ZIC2

4.93e-0415652C0431363
DiseaseBurkitt Leukemia

SMARCA4 ARID1A

4.93e-0415652C4721444
DiseaseAfrican Burkitt's lymphoma

SMARCA4 ARID1A

4.93e-0415652C0343640
Diseaseliver volume

ARID1A JMJD1C

4.93e-0415652EFO_0600048
Diseaseneuroimaging measurement

THSD4 HDAC9 ATXN2L SULF2 ZNRF3 GLI3 JMJD1C PGM1 FOXJ1

5.37e-041069659EFO_0004346
DiseaseLobar Holoprosencephaly

GLI2 ZIC2

5.62e-0416652C0431362
DiseaseSemilobar Holoprosencephaly

GLI2 ZIC2

5.62e-0416652C0751617
Diseasedigit length ratio

GLI3 GLIS1

5.62e-0416652EFO_0004841
Diseasephospholipids in large HDL measurement

ABCA1 SULF2 ARID1A

5.68e-0473653EFO_0022190
Diseasephospholipids:total lipids ratio, high density lipoprotein cholesterol measurement

ABCA1 SULF2 GATA6 SMARCA4 JMJD1C

5.85e-04307655EFO_0004612, EFO_0020946
DiseaseDNA methylation

RGMA HDAC9 ABCA1 GLI3 DCHS1 CCDC85A GLIS1

5.92e-04656657GO_0006306
DiseaseHoloprosencephaly

GLI2 ZIC2

6.36e-0417652C0079541
Diseasediastolic blood pressure, systolic blood pressure

RGMA HDAC9 HOXB3 MALRD1 ANK2 VGLL2 CTIF

6.71e-04670657EFO_0006335, EFO_0006336
Diseasesexual dimorphism measurement

ATXN2L ABCA1 CATSPER1 VGLL2 GLI2 SMARCA4 ARID1A JMJD1C LACTBL1

6.85e-041106659EFO_0021796
Diseaseanti-Mullerian hormone measurement

RGMA ZNRF3

8.85e-0420652EFO_0004769
DiseaseSarcoma

SOX2 SMARCA4

9.77e-0421652C1261473
Diseasemetabolic syndrome

ABCA1 SMARCA4 ARID1A JMJD1C

1.00e-03200654EFO_0000195
Diseasemiddle cerebral artery infarction (biomarker_via_orthology)

RGMA HDAC9 CRTC1

1.15e-0393653DOID:3525 (biomarker_via_orthology)
Diseasecholesteryl ester measurement, intermediate density lipoprotein measurement

ABCA1 SMARCA4 JMJD1C

1.19e-0394653EFO_0008595, EFO_0010351
Diseaselipid measurement, intermediate density lipoprotein measurement

ABCA1 SMARCA4 JMJD1C

1.26e-0396653EFO_0004529, EFO_0008595
DiseaseHIV-1 infection

DYRK1A NBEA CCDC85A

1.34e-0398653EFO_0000180
Diseasetotal cholesterol measurement, intermediate density lipoprotein measurement

ABCA1 SMARCA4 JMJD1C

1.38e-0399653EFO_0004574, EFO_0008595
Diseasephospholipid measurement, intermediate density lipoprotein measurement

ABCA1 SMARCA4 JMJD1C

1.38e-0399653EFO_0004639, EFO_0008595
Diseaselow density lipoprotein cholesterol measurement, alcohol consumption measurement

ABCA1 SMARCA4 ARID1A

1.38e-0399653EFO_0004611, EFO_0007878
Diseaselarge artery stroke, coronary artery disease

HDAC9 SMARCA4

1.39e-0325652EFO_0001645, EFO_0005524
Diseaselow density lipoprotein cholesterol measurement, alcohol drinking

ABCA1 SMARCA4 ARID1A

1.50e-03102653EFO_0004329, EFO_0004611
Diseasevisuospatial function measurement

RGMA DYRK1A

1.50e-0326652EFO_0803533
Diseasetriglyceride measurement, very low density lipoprotein cholesterol measurement

ABCA1 SMARCA4 TNKS2 ARID1A

1.52e-03224654EFO_0004530, EFO_0008317
Diseasecholesteryl esters:total lipids ratio, intermediate density lipoprotein measurement

SMARCA4 ARID1A JMJD1C

1.54e-03103653EFO_0008595, EFO_0020944
Diseasefree cholesterol measurement, intermediate density lipoprotein measurement

ABCA1 SMARCA4 JMJD1C

1.59e-03104653EFO_0008591, EFO_0008595
Diseasephospholipids:total lipids ratio

ABCA1 SMARCA4 ARID1A JMJD1C

1.60e-03227654EFO_0020946
DiseaseSezary Syndrome

SMARCA4 ARID1A

1.62e-0327652C0036920
Diseaselipoprotein measurement

ABCA1 SULF2 ARID1A

1.63e-03105653EFO_0004732
DiseaseIniencephaly

GLI3 ZIC2

1.74e-0328652C0152234
DiseaseTethered Cord Syndrome

GLI3 ZIC2

1.74e-0328652C0080218
DiseaseSpinal Cord Myelodysplasia

GLI3 ZIC2

1.74e-0328652C0344479
DiseaseExencephaly

GLI3 ZIC2

1.74e-0328652C0266453
DiseaseNeurenteric Cyst

GLI3 ZIC2

1.74e-0328652C0027806
DiseaseAcrania

GLI3 ZIC2

1.74e-0328652C0702169
DiseaseDiastematomyelia

GLI3 ZIC2

1.74e-0328652C0011999
Diseasebalding measurement

HDAC9 SULF2 ZNRF3 GLI2 CRTC1 CTIF GLIS1

1.76e-03792657EFO_0007825
DiseaseCraniorachischisis

GLI3 ZIC2

1.87e-0329652C0152426
Diseasemammographic density percentage

NBEA TET3

1.87e-0329652EFO_0006502
Diseasetriglyceride measurement, intermediate density lipoprotein measurement

ABCA1 SMARCA4 TNKS2

1.91e-03111653EFO_0004530, EFO_0008595
DiseaseNeural Tube Defects

GLI3 ZIC2

2.00e-0330652C0027794
Diseasecholesteryl esters:total lipids ratio, high density lipoprotein cholesterol measurement

ABCA1 GATA6 SMARCA4 JMJD1C

2.05e-03243654EFO_0004612, EFO_0020944
Diseasephysical activity measurement, body mass index

ATXN2L TRIM8 CRTC1

2.06e-03114653EFO_0004340, EFO_0008002
Diseaseantihyperlipidemic drug use measurement

ABCA1 SMARCA4 ARID1A

2.11e-03115653EFO_0803367
Diseasecholesteryl esters to total lipids in large LDL percentage

ABCA1 JMJD1C

2.13e-0331652EFO_0022249
Diseaseupper aerodigestive tract neoplasm

THSD4 PRUNE2 ZNRF3 CCDC85A

2.14e-03246654EFO_0004284

Protein segments in the cluster

PeptideGeneStartEntry
LGQDPYHGPNQAHGL

UNG

151

P13051
AHQGDHYRLSQPGLS

AMOT

361

Q4VCS5
GSHHGRPQYLGENLS

CATSPER1

146

Q8NEC5
EASHHGGSYLPHGPN

CATSPER1

171

Q8NEC5
RDHQKSYQGGSAPHP

CTIF

221

O43310
STEYPHGGSQGQLLH

NEDD9

576

Q14511
GPHNSPSHNQIYGRA

ABCA12

1006

Q86UK0
GENPSHYGITAFNHP

ABCA1

1621

O95477
HLCLPYADGLHPTGN

C19orf18

21

Q8NEA5
GHPTYQFSANTGPAH

DYRK1A

716

Q13627
LLPHGYDGAGPDHSS

DHTKD1

696

Q96HY7
STYHQHQQPPSGGGA

DLX2

21

Q07687
APHLGSGQPQQNLYH

ATXN2L

901

Q8WWM7
DFGGHHPDPNLTYAA

PGM1

256

P36871
LPGAQSPAYHGGHSS

ARHGEF17

261

Q96PE2
GLEPYAGPQQNSHDH

ARID1A

191

O14497
AHPDAATTNGYTPLH

ANK2

521

Q01484
HAYTGQPSPRGLHSE

MISP

71

Q8IVT2
GANGHISYHLASPAD

DCHS1

2406

Q96JQ0
APGLPDSHAGQQFHA

GLI3

1131

P10071
SYQLHPAGPEFAGHS

HELT

146

A6NFD8
AGGTPDYDPHAHGLQ

HOXA3

336

O43365
SPHLLGQAHPSASYN

JMJD1C

841

Q15652
HPTQPSHVAGGLYSG

DYNC2I2

226

Q96EX3
HNSQQGLPHYAHPGA

ONECUT1

191

Q9UBC0
GGASYGNHLSHPPEM

LHX1

386

P48742
QSGGAASAPHLHDYL

GLI2

196

P10070
FPSEGSNLTPAHHYN

PIP5K1A

121

Q99755
DYLQGVPSNGHPLGH

POU3F4

41

P49335
LSPPFYDHNGDVSAH

MALRD1

101

Q5VYJ5
ADSAGYVTSPNHPHN

CUBN

2226

O60494
LPYHLQGSGSGPANH

GATA6

201

Q92908
NFYPLDHHGLSPGFD

LACTBL1

466

A8MY62
HGSLPDSQQLGYASH

CRTC1

541

Q6UUV9
FYHSSLAPTPQLGGH

MT-CO3

101

P00414
AGPSLYGLNHLSHHP

HOXB3

366

P14651
YGLNHLSHHPSGNLD

HOXB3

371

P14651
LSHHPSGNLDYNGAP

HOXB3

376

P14651
SDGAGPLYSHHLPTS

COQ4

31

Q9Y3A0
GTDPHGYHQVPGSAA

FOXJ1

56

Q92949
GTSPEHLKQHYGGSP

CCDC85A

356

Q96PX6
GQYGGSIPASSSHPH

HDAC9

366

Q9UKV0
EHHSLLYGTNPLDGQ

HDAC9

696

Q9UKV0
ETHGFNPLRPNGYHS

GLIS1

546

Q8NBF1
HLYHPLGSQHPFSAG

SALL2

276

Q9Y467
GLHPAAAAGAYSHPA

FOXD3

276

Q9UJU5
AGSQLGPGYQHHAQP

KIF23

941

Q02241
HLLQALDYGAPPHGG

DARS2

566

Q6PI48
DQLGYPQHPGLNAHG

SOX2

176

P48431
AGPHHTLLPGLDSYS

PRUNE2

456

Q8WUY3
KGHSYNALPQHNGSE

MTF1

316

Q14872
RGAPGYSLDQAHHLP

NBEA

2636

Q8NFP9
AGVGFAHSPQPNYIH

HID1

186

Q8IV36
HSQGYPSPLGGSEHA

SMARCA4

116

P51532
PYANGDPHVGHALNK

IARS2

116

Q9NSE4
LQSYATNHHPAGLSG

PRR12

56

Q9ULL5
SRLHSLPQHYQGAGA

SOX1

366

O00570
ATPNYTHCGLFGDPH

RGMA

156

Q96B86
PNGFKQHGNPHLYHS

USP53

496

Q70EK8
YSHLQGHLGHFPGPE

PRR22

211

Q8IZ63
YLPTAGAPGSLHSHA

TNRC18

166

O15417
PYSPAALHGHLHQGA

VGLL2

176

Q8N8G2
ASPGNHRNHYNDGPN

USP9Y

986

O00507
GQPYTGPAAHHLNNP

USP9Y

2516

O00507
LHALHNSLSPAYGGA

TET3

1321

O43151
QGRHSTPLHLAAGYN

TNKS2

676

Q9H2K2
QSGSSQGLYGLHPDH

ZNRF3

751

Q9ULT6
HQVPQHGPLYQSDSG

THSD4

216

Q6ZMP0
SSVANHGGHQPYPRS

TRIM8

476

Q9BZR9
YDPHSSDLGGHLTNQ

TTLL10

406

Q6ZVT0
SHAAPHGPEDSAPQY

SULF2

221

Q8IWU5
HAAHVGSYSGPPFNS

ZIC2

101

O95409