Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyBiologicalProcesslipoprotein metabolic process

ATM LCAT PIGV ZDHHC6 HHATL

1.48e-06147285GO:0042157
GeneOntologyBiologicalProcesslipoprotein biosynthetic process

LCAT PIGV ZDHHC6 HHATL

1.23e-05106284GO:0042158
Domain-

C1QTNF1 EDA

2.54e-03502822.60.120.40
DomainTumour_necrosis_fac-like_dom

C1QTNF1 EDA

3.40e-0358282IPR008983
DomainCollagen

C1QTNF1 EDA

7.17e-0385282PF01391
DomainCollagen

C1QTNF1 EDA

7.17e-0385282IPR008160
DomainARM-type_fold

STK36 ATM HUWE1

1.39e-02339283IPR016024
Pubmed

ATM and SIRT6/SNF2H Mediate Transient H2AX Stabilization When DSBs Form by Blocking HUWE1 to Allow Efficient γH2AX Foci Formation.

ATM HUWE1

3.75e-06428226711340
Pubmed

Regulation of mitochondrial morphology and function by stearoylation of TFR1.

HUWE1 ZDHHC6

3.75e-06428226214738
Pubmed

The E3 ubiquitin ligase Mule acts through the ATM-p53 axis to maintain B lymphocyte homeostasis.

ATM HUWE1

3.75e-06428222213803
Pubmed

A proteomic analysis of ataxia telangiectasia-mutated (ATM)/ATM-Rad3-related (ATR) substrates identifies the ubiquitin-proteasome system as a regulator for DNA damage checkpoints.

ATM HUWE1

2.80e-051028217478428
Cytoband2q35

STK36 SLC23A3

1.07e-03792822q35
CytobandEnsembl 112 genes in cytogenetic band chr2q35

STK36 SLC23A3

2.82e-03129282chr2q35
ToppCellfacs-Trachea-24m-Mesenchymal-fibroblast-fibroblast_of_trachea-|24m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

TMEM221 PDGFA KCNV2 SLC23A3

4.21e-06175284bb898796662b97f7459b7dda7cecf6a9bde8b055
ToppCellsevere_COVID-19-CD4+_T_naive|severe_COVID-19 / disease group, cell group and cell class (v2)

SARAF ATM TMEM45B EDA

6.33e-061942844b86f3cc173ea779399d5b3598b45b25f60a4395
ToppCellHippocampus-Macroglia-CSF_related-EPENDYMAL-Ependymal.Ccdc153_(Ccdc153)--|Hippocampus / BrainAtlas - Mouse McCarroll V32

TMEM45B KCNV2 C1orf87

5.35e-05117283454efceabe739cdf293f81c8a938811f12321a47
ToppCellHippocampus-Macroglia-CSF_related-EPENDYMAL-Ependymal.Ccdc153_(Ccdc153)|Hippocampus / BrainAtlas - Mouse McCarroll V32

TMEM45B KCNV2 C1orf87

5.35e-0511728391936a3ffbfa29024ced9d01df962b4ccfaf8966
ToppCellHippocampus-Macroglia-CSF_related-EPENDYMAL|Hippocampus / BrainAtlas - Mouse McCarroll V32

TMEM45B KCNV2 C1orf87

5.35e-05117283409b3ab16786bced8c9bc9c0e89b0078402f365a
ToppCellHippocampus-Macroglia-CSF_related-EPENDYMAL-Ependymal.Ccdc153_(Ccdc153)-|Hippocampus / BrainAtlas - Mouse McCarroll V32

TMEM45B KCNV2 C1orf87

5.35e-05117283e33ec9044541d2ef53f6633891238559b01b7957
ToppCellPBMC_fresh-frozen-Severe-critical_progression_d12-22-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c01-LEF1|Severe-critical_progression_d12-22 / Compartment, severity and other cell annotations on 10x 3' data (130k)

STK36 SARAF EDA

1.33e-04159283b9d34b9ed8db798f5ea93c44b469cae499403cb8
ToppCellPrimary_Motor_Cortex_(M1)-Neuronal-Glutamatergic_Excit-Glut_E_(THEMIS)-Glut_IT_L5/L6_Car3_THEMIS-Exc_L5-6_THEMIS_IL7R|Primary_Motor_Cortex_(M1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

HPSE2 ASB12 EDA

1.62e-041702836af7dee9b8298d4499e05a82cf9cdfe3bd81d384
ToppCellkidney_cells-Adult_normal_reference-Mesenchymal-Myocytic_interstitial_cell-Vascular_Smooth_Muscle_Cell|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

LVRN HPSE2 C1QTNF1

1.71e-04173283901b8e6909c1f3849906fad9cee17b8f0bab050d
ToppCellkidney_cells-Adult_normal_reference-Mesenchymal-Myocytic_interstitial_cell-Vascular_Smooth_Muscle_Cell-|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

LVRN HPSE2 C1QTNF1

1.71e-04173283fc2602b2ce051cd4c33957d7e3d041ff8a529883
ToppCell3'_v3-GI_small-bowel-Lymphocytic_T_CD4-Tnaive/CM_CD4|GI_small-bowel / Manually curated celltypes from each tissue

TMEM45B EDA EIF3L

1.76e-041752834b77e9cf712c9e3b4fb68462a96aea47be124e8d
ToppCellE18.5-Mesenchymal-Mesenchymal_myocytic-Myofibroblast_vascular-VSMC-VSMC_prolif|E18.5 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

NRM HPSE2 PDGFA

1.82e-041772834553ee8cd9c24db6511b09fe49ed11a89e7cde9e
ToppCellsystemic_lupus_erythematosus-flare-Lymphocytic_T-T4_naive-male|systemic_lupus_erythematosus / PBMC cell types (v2) per disease, treatment status, and sex

SARAF ATM TMEM221

1.82e-04177283db6de487ef7976b444afadbf3ac60b3259925566
ToppCellCOVID-19-kidney-vSMC/Pericyte|COVID-19 / Disease (COVID-19 only), tissue and cell type

HPSE2 C1QTNF1 PDGFA

1.89e-04179283111b1084f73306bdeffaaf240e7dbb4f5bf33de1
ToppCellPBMC_fresh-frozen-Severe-critical_progression_d03-09-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c01-LEF1|Severe-critical_progression_d03-09 / Compartment, severity and other cell annotations on 10x 3' data (130k)

SARAF ATM EDA

2.04e-041842835350b58aa9979631228835d11eb45ddf81d08bff
ToppCellfacs-Lung-18m-Mesenchymal-fibroblast-adventitial_fibroblast-adventitial_fibroblast_l25-31|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

LVRN C1QTNF1 MRGPRG

2.14e-04187283fa8f221b4c2df61eadaa9c77e4cf45848b00330b
ToppCellPBMC_fresh-frozen-Severe-critical_convalescent_d14-21-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c01-LEF1|Severe-critical_convalescent_d14-21 / Compartment, severity and other cell annotations on 10x 3' data (130k)

SARAF PDGFA EDA

2.18e-041882832b630b0609d4ac61338d6533cb7893cfe1241e44
ToppCell(1)_T_CD4_naive|World / Spleen cell shreds - cell class (v1) and cell subclass (v1)

SARAF ATM EDA

2.18e-04188283b8f67ac2faadd5b848955e43ab5d6cf5e49b3681
ToppCellSmart-seq2-tissue-resident_(Smart-seq2)-lymphocytic-T_lymphocytic-CD4-positive_helper_T_cell|tissue-resident_(Smart-seq2) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type

SARAF ATM EIF3L

2.18e-04188283f7dd01084ad14d2a2d8adf552e811b84eebf5514
ToppCellfacs-Lung-nan-3m-Epithelial-Ciliated_cell|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

STK36 C1orf87 HHATL

2.25e-04190283e243b5fbb17b9ec3cc90bbe970c1d30b0fd1c2e1
ToppCellfacs-Lung-nan-3m-Epithelial-ciliated_columnar_cell_of_tracheobronchial_tree|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

STK36 C1orf87 HHATL

2.25e-04190283fe844559b95832845d2e8d3ab4b57e3d558bc372
ToppCellsevere_COVID-19-CD4+_T_naive|World / disease group, cell group and cell class (v2)

SARAF TMEM45B EDA

2.28e-0419128355a282478488efd1561ea57a6f0218f55f711bb0
ToppCellPBMC_fresh-frozen-Severe-critical_convalescent_d14-21-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell|Severe-critical_convalescent_d14-21 / Compartment, severity and other cell annotations on 10x 3' data (130k)

SARAF PDGFA EDA

2.32e-0419228332927ef3b93e0497e9bbe63c2754da03cf178202
ToppCellmild_COVID-19-CD4+_T_naive|World / disease group, cell group and cell class (v2)

SARAF TMEM45B EDA

2.35e-0419328342ddacc55658ea6ba4248ac19c9c3709f342b4f5
ToppCellmild_COVID-19-CD4+_T_naive|mild_COVID-19 / disease group, cell group and cell class (v2)

SARAF TMEM45B EDA

2.35e-0419328340fc4a519c883c6c269a9c05be36ae906f75426a
ToppCellPCW_07-8.5-Mesenchymal-Mesenchymal_fibroblastic-mes_adventitial_fibro_(10)|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung

LVRN HPSE2 EDA

2.35e-04193283cd45118ced91b10baed3b1068d4673ec99824b86
ToppCellHealthy/Control-CD4+_T_naive|Healthy/Control / Disease group and Cell class

SARAF ATM EDA

2.35e-04193283f5face746df3517c86d72e31ba8f1b78c4c6b481
ToppCellHealthy/Control-CD4+_T_naive|World / Disease group and Cell class

SARAF ATM EDA

2.35e-041932836218e6cbe44d92bb98d42ef2f5e18ab7a683b100
ToppCellHealthy_donor-CD4+_T_naive|World / disease group, cell group and cell class (v2)

SARAF ATM EDA

2.39e-04194283bcaaa6b6ce5b3552f11311d8ee91c35b8ec065f8
ToppCellSevere-CD4+_T|World / Disease group and Cell class

SARAF TMEM45B EDA

2.39e-041942832ad888f78765ecfb8d1ea978c75c90fa3030509a
ToppCellHealthy_donor-CD4+_T_naive|Healthy_donor / disease group, cell group and cell class (v2)

SARAF ATM EDA

2.39e-04194283a8a0368a4e0eb5654fdffc8a779b08ad402aa2eb
ToppCellPBMC_fresh-frozen-Severe-critical_progression_d12-22_with-steroid-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c01-LEF1|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)

SARAF ATM EIF3L

2.39e-04194283a7bfc535546d3c1a4e0cbcfeb7da816b34303350
ToppCellPBMC-Mild-Lymphocyte-T/NK-CD4+_T-CD4+_T_naive-|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)

SARAF ATM EDA

2.42e-04195283d056c806c7ad38ca425bdaa44385424a7f43f915
ToppCellCOVID-19_Mild-Lymphoid_T/NK-CD4+_T_naive|COVID-19_Mild / Disease group, lineage and cell class

SARAF ATM EDA

2.42e-041952838aec807b24bcebf1a8011d676d2143b6fc570f1d
ToppCellPBMC-Mild-Lymphocyte-T/NK-CD4+_T-CD4+_T_naive|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

SARAF ATM EDA

2.42e-041952831d3c51a3be5ad1fbc465c5f684565ec4c6f35f54
ToppCellPBMC-Mild-Lymphocyte-T/NK-CD4+_T-CD4+_T_naive|Mild / Location, Disease Group, Cell group, Cell class (2021.03.09)

SARAF ATM EDA

2.42e-041952836421d949bfebcd985bea7efc5731a1ca79350b61
ToppCellPBMC-Mild-Lymphocyte-T/NK-CD4+_T-CD4+_T_naive-|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

SARAF ATM EDA

2.42e-04195283d9965223430aba1ec0b1b77b5bd40d3a01e42e95
ToppCellILEUM-inflamed-(1)_T_cell-(1)_Naive_T_cells|(1)_T_cell / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)

SARAF ATM EIF3L

2.42e-04195283c82d312ddc3231b0f3c58b2fb74af5dad24948e4
ToppCellCOVID-19_Severe-CD4+_T_naive|World / disease group, cell group and cell class

SARAF TMEM45B EDA

2.46e-04196283b47c89eca6053c309fd328251c4fa33a76d16889
ToppCellILEUM-non-inflamed-(1)_Naive_T_cells|non-inflamed / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)

SARAF ATM EIF3L

2.46e-041962830370eabc66dc8dcff73ca58b48b0d1858877ce3e
ToppCellPBMC_fresh-frozen-Severe-critical_progression_d12-22_with-steroid-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c05-FOS|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)

SARAF EDA EIF3L

2.46e-04196283f1cb3bc88f2f430af1eaf75269fc0c7458f105c4
ToppCellSevere-CD4+_T|Severe / Disease group and Cell class

SARAF TMEM45B EDA

2.46e-04196283576e0aa2ae146a86201dea21097ffe1c867956e7
ToppCellCOVID-19-Lymphoid-CD4_T_cells|Lymphoid / Condition, Lineage and Cell class

SARAF TMEM45B EDA

2.46e-0419628328515d8e2f02366fa0ac1bea251a7a3f659c98c7
ToppCellPBMC_fresh-frozen-Severe-critical_progression_d12-22_with-steroid-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)

SARAF EDA EIF3L

2.50e-04197283479841809554a9d0b1e4f23da6e657392b0f4971
ToppCellCOVID-19_Severe-CD4+_T_naive|COVID-19_Severe / disease group, cell group and cell class

SARAF TMEM45B EDA

2.50e-04197283575494abe82de4924ac18cef4355c305e9a6481f
ToppCell(2)_NK/T-(22)_CD8+_T_cell-(221)_CD8+_Naive_T_cell|(22)_CD8+_T_cell / immune cells in Peripheral Blood (logTPM normalization)

SARAF ATM EIF3L

2.50e-04197283ac77bcd7548db40147bf55dbf0ce86ed0b6a86da
ToppCellmild-low-quality_cells|mild / Cohort 1 (10x PBMC) with disease condition, cell group and cell class

TBC1D32 ATM SLC23A3

2.50e-04197283e4331969bd911d1ebb5453f40a7057297b5389b4
ToppCell10x5'-blood-Lymphocytic_T_CD4-Tnaive/CM_CD4|blood / Manually curated celltypes from each tissue

SARAF EDA EIF3L

2.50e-0419728333a7f3358393eeeb8f8c1098fd4de54f74d68c59
ToppCellnormal|World / PBMC cell types (v2) per disease, treatment status, and sex

SARAF ATM EIF3L

2.50e-04197283232e48864aeb5ad6688352383427fb1771986ddc
ToppCelllymphoid-T_cell|World / Lineage, cell class and subclass

SARAF ATM EIF3L

2.54e-04198283c427a52bc5098894c55b62d9b8545a2bbf9923fd
ToppCell(1)_T_cell-(14)_Tcm|(1)_T_cell / shred on Cell_type and subtype

ATM EDA EIF3L

2.54e-0419828340d9adb32247ab18db21a0f215b99a29b9a839b7
ToppCell10x5'-blood-Lymphocytic_T_CD4|blood / Manually curated celltypes from each tissue

SARAF EDA EIF3L

2.54e-04198283a7e39a045e035beaf19f0f0aeb4248d0762da630
ToppCellPBMC_fresh-frozen|World / Compartment, severity and other cell annotations on 10x 3' data (130k)

SARAF ATM EIF3L

2.54e-04198283dcc223a0396b8b673e4ed8c6733ec6cd74e9a03a
ToppCelllymphoid|World / Lineage, cell class and subclass

SARAF ATM EIF3L

2.57e-04199283bf599721e7109cf9f361e9381544c291920c28be
ToppCelllymphoid-T_cell-CD8+_Naive_T_cell|World / Lineage, cell class and subclass

SARAF ATM EIF3L

2.57e-041992834de81f29c4d79868fd6254ceb81b4ddad22ae7d0
ToppCelllymphoid-T_cell-CD8+_Naive_T_cell|lymphoid / Lineage, cell class and subclass

SARAF ATM EIF3L

2.57e-0419928322926327c93ede9f3408c99a0d56e373a33240ef
ToppCellLPS_only-Mesenchymal_myocytic|LPS_only / Treatment groups by lineage, cell group, cell type

HPSE2 C1QTNF1 PDGFA

2.61e-042002838bc9923f82bfb836e2f524204c92050edeae8ca5
ToppCellLPS_IL1RA-Mesenchymal_myocytic|LPS_IL1RA / Treatment groups by lineage, cell group, cell type

HPSE2 C1QTNF1 PDGFA

2.61e-0420028377631c471cc5d453a749784f838cfa6408caf09b
ToppCellThalamus-Neuronal-Excitatory-eN3(Slc17a7_Gad1Gad2)-Slc17a6-Rora-Excitatory_Neuron.Slc17a6.Rora.Nptxr_(Reuniens_thalamic_nucleus?)|Thalamus / BrainAtlas - Mouse McCarroll V32

TMEM45B ASB12

4.67e-0451282a1ee951bc909502b64fa9a7361eaccf05dabbcc7
Diseasemigraine disorder

HPSE2 ZDHHC6 C1orf87

4.14e-03357273MONDO_0005277

Protein segments in the cluster

PeptideGeneStartEntry
LGTLALCGAALLYLA

B3GALT6

16

Q96L58
HSLCLLGRLLIYKQG

TBC1D32

431

Q96NH3
LLLALAVLAALYGHC

LVRN

26

Q6Q4G3
AICGKHGLYLTLSLL

C1orf87

346

Q8N0U7
CLATYAGLHVLLFGL

NOX5

241

Q96PH1
LLLGHCVGLYVASLL

HHATL

121

Q9HCP6
YFSLVGLLRLHSLLG

EIF3L

271

Q9Y262
VYGHLDCFRLLLLHG

ASB12

181

Q8WXK4
AFLLTLYLGLAHGLD

NRM

221

Q8IXM6
CLAPGALYLALLLHL

HPSE2

21

Q8WWQ2
KLLLNGARHLGYTLC

HUWE1

3621

Q7Z6Z7
LYGIVLGALLLLFFC

MRGPRG

196

Q86SM5
LLFLGFFGLSLALHL

EDA

41

Q92838
LGLCHILSVYLKGLD

ATM

2071

Q13315
QGLLLAYCLLLAFAS

C1QTNF1

6

Q9BXJ1
LIGHSLGCLHLLYFL

LCAT

201

P04180
VAGASGLLALYCLLL

TMEM179B

66

Q7Z7N9
LLLYTGLSLALCALG

TMEM178B

6

H3BS89
GYCLLLGLHLFLLTA

SARAF

11

Q96BY9
LLTYGCGLLRFQHLQ

NPHP3

811

Q7Z494
LYLQLLLECFTGEGH

KCNV2

346

Q8TDN2
SLGCYALCGRLLHLP

SLC23A3

331

Q6PIS1
CGFYDGLLILLLQLL

STK36

846

Q9NRP7
LTYWLLGLLLHCNFL

PIGV

476

Q9NUD9
IHSLLLYALFGGCVS

TMEM45B

146

Q96B21
LFLLLAPLGCIHAAF

ZDHHC6

146

Q9H6R6
CLLLLGCGYLAHVLA

PDGFA

6

P04085
LGFTCLLLAALCGHL

TMEM221

81

A6NGB7