Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyMolecularFunction	DNA-binding transcription factor activity, RNA polymerase II-specific	ALX3 FOXN1 TCF3 RARA HOXD9 NFATC2 HOXD11 KLF1 SAMD11 GATA2 SP6 WT1 NKX1-1 EVX1 LHX5 POU5F1B RXRG HAND2 TLX2 KLF2 FOXJ1 TBX6 NKX1-2	7.18e-10	1412	74	23	GO:0000981
GeneOntologyMolecularFunction	RNA polymerase II transcription regulatory region sequence-specific DNA binding	ALX3 TCF3 RARA HOXD9 NFATC2 HOXD11 KLF1 GATA2 SP6 WT1 NKX1-1 EVX1 LHX5 POU5F1B RXRG IKZF4 HAND2 TLX2 KLF2 FOXJ1 TBX6 NKX1-2	7.80e-09	1459	74	22	GO:0000977
GeneOntologyMolecularFunction	RNA polymerase II cis-regulatory region sequence-specific DNA binding	TCF3 RARA HOXD9 NFATC2 HOXD11 KLF1 GATA2 SP6 WT1 NKX1-1 EVX1 POU5F1B RXRG IKZF4 HAND2 TLX2 KLF2 FOXJ1 TBX6 NKX1-2	1.55e-08	1244	74	20	GO:0000978
GeneOntologyMolecularFunction	cis-regulatory region sequence-specific DNA binding	TCF3 RARA HOXD9 NFATC2 HOXD11 KLF1 GATA2 SP6 WT1 NKX1-1 EVX1 POU5F1B RXRG IKZF4 HAND2 TLX2 KLF2 FOXJ1 TBX6 NKX1-2	2.21e-08	1271	74	20	GO:0000987
GeneOntologyMolecularFunction	transcription factor binding	TCF3 RARA NFATC2 KLF1 GATA2 POU5F1B ZFPM1 SPEN MED13 IKZF4 HAND2 TBX6	1.94e-05	753	74	12	GO:0008134
GeneOntologyMolecularFunction	DNA-binding transcription activator activity, RNA polymerase II-specific	FOXN1 TCF3 NFATC2 KLF1 GATA2 WT1 POU5F1B HAND2 TLX2 FOXJ1	3.98e-05	560	74	10	GO:0001228
GeneOntologyMolecularFunction	DNA-binding transcription activator activity	FOXN1 TCF3 NFATC2 KLF1 GATA2 WT1 POU5F1B HAND2 TLX2 FOXJ1	4.35e-05	566	74	10	GO:0001216
GeneOntologyMolecularFunction	DNA-binding transcription factor binding	TCF3 KLF1 GATA2 POU5F1B ZFPM1 SPEN MED13 IKZF4 HAND2 TBX6	5.50e-05	582	74	10	GO:0140297
GeneOntologyMolecularFunction	zinc ion binding	ZSWIM8 CDIP1 RARA ZFR2 ZMIZ2 GATA2 WT1 LHX5 MMP3 SHANK3 RXRG IKZF4	9.90e-05	891	74	12	GO:0008270
GeneOntologyMolecularFunction	RNA polymerase II-specific DNA-binding transcription factor binding	TCF3 GATA2 POU5F1B ZFPM1 SPEN MED13 HAND2 TBX6	1.53e-04	417	74	8	GO:0061629
GeneOntologyMolecularFunction	retinoic acid-responsive element binding	RARA RXRG	2.81e-04	7	74	2	GO:0044323
GeneOntologyMolecularFunction	transcription coactivator binding	RARA GATA2 HAND2	1.06e-03	54	74	3	GO:0001223
GeneOntologyMolecularFunction	DNA-binding transcription repressor activity	TCF3 RARA HOXD9 NFATC2 SAMD11 POU5F1B	1.32e-03	326	74	6	GO:0001217
GeneOntologyMolecularFunction	transition metal ion binding	ZSWIM8 CDIP1 RARA ZFR2 ZMIZ2 GATA2 WT1 LHX5 MMP3 SHANK3 RXRG IKZF4	1.34e-03	1189	74	12	GO:0046914
GeneOntologyMolecularFunction	protein domain specific binding	TCF3 RARA KLF1 SAMD11 PKD1 GATA2 WT1 POU5F1B SHANK3 IKZF4	1.40e-03	875	74	10	GO:0019904
GeneOntologyMolecularFunction	C2H2 zinc finger domain binding	GATA2 WT1	1.78e-03	17	74	2	GO:0070742
GeneOntologyBiologicalProcess	positive regulation of transcription by RNA polymerase II	FOXN1 TCF3 RARA HOXD9 NFATC2 KLF1 SUPT5H ZMIZ2 PKD1 GATA2 WT1 EVX1 POU5F1B ZFPM1 MED13 RXRG IKZF4 HAND2 TLX2 KLF2 FOXJ1 TBX6	1.76e-09	1390	74	22	GO:0045944
GeneOntologyBiologicalProcess	embryo development	COL3A1 ALX3 JAG2 TCF3 RARA HOXD9 HOXD11 KLF1 PKD1 GATA2 WT1 DCHS1 EVX1 POU5F1B ZFPM1 SHANK3 HAND2 TLX2 KLF2 TBX6	9.87e-08	1437	74	20	GO:0009790
GeneOntologyBiologicalProcess	limb development	COL3A1 ALX3 FOXN1 RARA COMP HOXD9 ZNRF3 HOXD11 HAND2	1.07e-07	224	74	9	GO:0060173
GeneOntologyBiologicalProcess	appendage development	COL3A1 ALX3 FOXN1 RARA COMP HOXD9 ZNRF3 HOXD11 HAND2	1.07e-07	224	74	9	GO:0048736
GeneOntologyBiologicalProcess	tissue morphogenesis	COL3A1 JAG2 FOXN1 RARA HOXD11 PKD1 WT1 DCHS1 POU5F1B ZFPM1 SHANK3 HAND2 TLX2 TBX6	3.77e-07	750	74	14	GO:0048729
GeneOntologyBiologicalProcess	animal organ morphogenesis	COL3A1 ALX3 JAG2 FOXN1 RARA COMP HOXD9 HOXD11 SAMD11 PKD1 GATA2 SP6 WT1 DCHS1 ZFPM1 SHANK3 HAND2 TBX6	3.80e-07	1269	74	18	GO:0009887
GeneOntologyBiologicalProcess	embryo development ending in birth or egg hatching	COL3A1 ALX3 JAG2 RARA HOXD9 HOXD11 KLF1 PKD1 GATA2 DCHS1 EVX1 POU5F1B HAND2 KLF2 TBX6	8.60e-07	929	74	15	GO:0009792
GeneOntologyBiologicalProcess	cell fate commitment	JAG2 FOXN1 TCF3 RARA GATA2 WT1 POU5F1B ZFPM1 TBX6	3.32e-06	338	74	9	GO:0045165
GeneOntologyBiologicalProcess	chordate embryonic development	COL3A1 ALX3 JAG2 RARA HOXD9 HOXD11 KLF1 PKD1 GATA2 DCHS1 POU5F1B HAND2 KLF2 TBX6	3.52e-06	906	74	14	GO:0043009
GeneOntologyBiologicalProcess	anatomical structure formation involved in morphogenesis	COL3A1 RARA NFATC2 HOXD11 PKD1 GATA2 WT1 DCHS1 LHX5 POU5F1B ZFPM1 EMILIN1 SHANK3 HAND2 TLX2 KLF2 FOXJ1 TBX6	3.58e-06	1483	74	18	GO:0048646
GeneOntologyBiologicalProcess	negative regulation of transcription by RNA polymerase II	RIF1 TCF3 RARA HOXD9 NFATC2 SAMD11 SUPT5H GATA2 WT1 POU5F1B ZFPM1 SPEN KLF2 FOXJ1 TBX6	4.05e-06	1053	74	15	GO:0000122
GeneOntologyBiologicalProcess	negative regulation of DNA-templated transcription	RIF1 TCF3 RARA HOXD9 NFATC2 SAMD11 SUPT5H RECQL5 GATA2 WT1 POU5F1B ZFPM1 SPEN IKZF4 KLF2 FOXJ1 TBX6	6.99e-06	1399	74	17	GO:0045892
GeneOntologyBiologicalProcess	negative regulation of RNA biosynthetic process	RIF1 TCF3 RARA HOXD9 NFATC2 SAMD11 SUPT5H RECQL5 GATA2 WT1 POU5F1B ZFPM1 SPEN IKZF4 KLF2 FOXJ1 TBX6	7.97e-06	1413	74	17	GO:1902679
GeneOntologyBiologicalProcess	embryonic morphogenesis	ALX3 JAG2 TCF3 RARA HOXD9 HOXD11 GATA2 POU5F1B SHANK3 HAND2 TLX2 TBX6	8.17e-06	713	74	12	GO:0048598
GeneOntologyBiologicalProcess	skeletal system development	COL3A1 ALX3 JAG2 RARA COMP HOXD9 NFATC2 HOXD11 PKD1 DCHS1 HAND2	1.15e-05	615	74	11	GO:0001501
GeneOntologyBiologicalProcess	cartilage development	COL3A1 RARA COMP NFATC2 HOXD11 PKD1 HAND2	2.66e-05	243	74	7	GO:0051216
GeneOntologyBiologicalProcess	embryonic organ development	ALX3 RARA HOXD9 HOXD11 KLF1 PKD1 GATA2 ZFPM1 HAND2 TBX6	3.08e-05	561	74	10	GO:0048568
GeneOntologyBiologicalProcess	connective tissue development	COL3A1 RARA COMP NFATC2 HOXD11 PKD1 WT1 HAND2	3.13e-05	343	74	8	GO:0061448
GeneOntologyBiologicalProcess	tube morphogenesis	COL3A1 FOXN1 RARA COMP HOXD11 PKD1 GATA2 WT1 DCHS1 EMILIN1 SHANK3 HAND2 KLF2 TBX6	4.02e-05	1125	74	14	GO:0035239
GeneOntologyBiologicalProcess	circulatory system development	COL3A1 FOXN1 RARA COMP NFATC2 PKD1 EIF4G2 GATA2 WT1 DCHS1 ZFPM1 EMILIN1 HAND2 KLF2 FOXJ1 TBX6	4.19e-05	1442	74	16	GO:0072359
GeneOntologyBiologicalProcess	skeletal system morphogenesis	COL3A1 ALX3 RARA COMP HOXD9 HOXD11 PKD1	6.10e-05	277	74	7	GO:0048705
GeneOntologyBiologicalProcess	morphogenesis of an epithelium	JAG2 FOXN1 RARA HOXD11 PKD1 WT1 DCHS1 SHANK3 HAND2 TBX6	7.03e-05	619	74	10	GO:0002009
GeneOntologyBiologicalProcess	heart development	COL3A1 RARA PKD1 EIF4G2 WT1 DCHS1 ZFPM1 EMILIN1 HAND2 FOXJ1 TBX6	7.68e-05	757	74	11	GO:0007507
GeneOntologyBiologicalProcess	tube development	COL3A1 FOXN1 RARA COMP HOXD11 PKD1 GATA2 WT1 DCHS1 EMILIN1 SHANK3 HAND2 KLF2 FOXJ1 TBX6	1.15e-04	1402	74	15	GO:0035295
GeneOntologyBiologicalProcess	mitral valve formation	DCHS1 ZFPM1	1.26e-04	5	74	2	GO:0003192
GeneOntologyBiologicalProcess	epithelial tube morphogenesis	RARA HOXD11 PKD1 WT1 DCHS1 SHANK3 HAND2 TBX6	1.31e-04	421	74	8	GO:0060562
GeneOntologyBiologicalProcess	endochondral bone morphogenesis	COL3A1 RARA COMP HOXD11	1.87e-04	79	74	4	GO:0060350
GeneOntologyBiologicalProcess	embryonic hemopoiesis	KLF1 GATA2 ZFPM1	2.04e-04	32	74	3	GO:0035162
GeneOntologyBiologicalProcess	cell activation	COL3A1 JAG2 FOXN1 RIF1 TCF3 RARA COMP NFATC2 GATA2 PI4K2A ZFPM1 EMILIN1 DCAF12 FOXJ1	2.90e-04	1356	74	14	GO:0001775
GeneOntologyBiologicalProcess	embryonic forelimb morphogenesis	ALX3 HOXD9 HOXD11	3.16e-04	37	74	3	GO:0035115
GeneOntologyBiologicalProcess	retinoic acid receptor signaling pathway	RARA RXRG KLF2	3.42e-04	38	74	3	GO:0048384
GeneOntologyBiologicalProcess	primitive erythrocyte differentiation	GATA2 ZFPM1	3.51e-04	8	74	2	GO:0060319
GeneOntologyBiologicalProcess	erythrocyte differentiation	TCF3 KLF1 GATA2 ZFPM1 KLF2	4.28e-04	176	74	5	GO:0030218
GeneOntologyBiologicalProcess	atrioventricular valve formation	DCHS1 ZFPM1	4.50e-04	9	74	2	GO:0003190
GeneOntologyBiologicalProcess	visceral serous pericardium development	WT1 HAND2	4.50e-04	9	74	2	GO:0061032
GeneOntologyBiologicalProcess	regulation of cell development	FOXN1 RARA HOXD11 RPTOR EIF4G2 GATA2 ZFPM1 SPEN SHANK3 TLX2 FOXJ1 TBX6	4.90e-04	1095	74	12	GO:0060284
GeneOntologyBiologicalProcess	regulation of miRNA metabolic process	ZSWIM8 RARA GATA2 WT1	5.16e-04	103	74	4	GO:2000628
GeneOntologyBiologicalProcess	appendage morphogenesis	COL3A1 ALX3 HOXD9 HOXD11 HAND2	5.37e-04	185	74	5	GO:0035107
GeneOntologyBiologicalProcess	limb morphogenesis	COL3A1 ALX3 HOXD9 HOXD11 HAND2	5.37e-04	185	74	5	GO:0035108
GeneOntologyBiologicalProcess	positive regulation of gene expression	ZSWIM8 RIF1 TCF3 CHIA RARA NFATC2 KLF1 EIF4G2 GATA2 WT1 POU5F1B ZFPM1 EMILIN1 HAND2	5.55e-04	1446	74	14	GO:0010628
GeneOntologyBiologicalProcess	pattern specification process	ALX3 HOXD9 HOXD11 WT1 DCHS1 HAND2 FOXJ1 TBX6	5.84e-04	526	74	8	GO:0007389
GeneOntologyBiologicalProcess	ureteric bud development	RARA HOXD11 WT1 DCHS1	5.96e-04	107	74	4	GO:0001657
GeneOntologyBiologicalProcess	erythrocyte homeostasis	TCF3 KLF1 GATA2 ZFPM1 KLF2	6.06e-04	190	74	5	GO:0034101
GeneOntologyBiologicalProcess	cartilage development involved in endochondral bone morphogenesis	RARA COMP HOXD11	6.42e-04	47	74	3	GO:0060351
GeneOntologyBiologicalProcess	apoptotic process involved in development	JAG2 WT1 HAND2	6.42e-04	47	74	3	GO:1902742
GeneOntologyBiologicalProcess	vasculature development	COL3A1 FOXN1 COMP NFATC2 PKD1 GATA2 WT1 EMILIN1 HAND2 KLF2 TBX6	6.44e-04	969	74	11	GO:0001944
GeneOntologyBiologicalProcess	epithelium development	JAG2 FOXN1 RARA HOXD11 RPTOR PKD1 GATA2 WT1 DCHS1 SHANK3 HAND2 KLF2 FOXJ1 TBX6	6.49e-04	1469	74	14	GO:0060429
GeneOntologyBiologicalProcess	mesonephric tubule development	RARA HOXD11 WT1 DCHS1	6.61e-04	110	74	4	GO:0072164
GeneOntologyBiologicalProcess	mesonephric epithelium development	RARA HOXD11 WT1 DCHS1	6.61e-04	110	74	4	GO:0072163
GeneOntologyBiologicalProcess	forelimb morphogenesis	ALX3 HOXD9 HOXD11	6.83e-04	48	74	3	GO:0035136
GeneOntologyBiologicalProcess	elastic fiber assembly	COL3A1 EMILIN1	6.84e-04	11	74	2	GO:0048251
GeneOntologyBiologicalProcess	mesonephros development	RARA HOXD11 WT1 DCHS1	7.32e-04	113	74	4	GO:0001823
GeneOntologyBiologicalProcess	T cell differentiation in thymus	JAG2 FOXN1 TCF3 FOXJ1	7.56e-04	114	74	4	GO:0033077
GeneOntologyBiologicalProcess	primitive hemopoiesis	GATA2 ZFPM1	8.19e-04	12	74	2	GO:0060215
GeneOntologyBiologicalProcess	gland development	FOXN1 RARA HOXD9 KLF1 PKD1 GATA2 WT1 HAND2	8.58e-04	558	74	8	GO:0048732
GeneOntologyBiologicalProcess	miRNA metabolic process	ZSWIM8 RARA GATA2 WT1	8.88e-04	119	74	4	GO:0010586
GeneOntologyBiologicalProcess	forebrain neuron differentiation	GATA2 LHX5 SHANK3	9.13e-04	53	74	3	GO:0021879
GeneOntologyBiologicalProcess	bone morphogenesis	COL3A1 RARA COMP HOXD11	1.03e-03	124	74	4	GO:0060349
GeneOntologyBiologicalProcess	negative regulation of developmental process	RARA NFATC2 GATA2 WT1 POU5F1B ZFPM1 EMILIN1 HAND2 TLX2 KLF2 FOXJ1 TBX6	1.26e-03	1220	74	12	GO:0051093
GeneOntologyBiologicalProcess	response to retinoic acid	RARA POU5F1B RXRG HAND2	1.27e-03	131	74	4	GO:0032526
GeneOntologyBiologicalProcess	mitral valve morphogenesis	DCHS1 ZFPM1	1.29e-03	15	74	2	GO:0003183
GeneOntologyBiologicalProcess	cellular response to peptide	KLF1 KLF2	1.29e-03	15	74	2	GO:1901653
GeneOntologyBiologicalProcess	in utero embryonic development	COL3A1 JAG2 KLF1 PKD1 GATA2 POU5F1B HAND2 KLF2	1.31e-03	596	74	8	GO:0001701
GeneOntologyBiologicalProcess	granulocyte differentiation	RARA GATA2 ZFPM1	1.31e-03	60	74	3	GO:0030851
GeneOntologyBiologicalProcess	mitral valve development	DCHS1 ZFPM1	1.47e-03	16	74	2	GO:0003174
GeneOntologyBiologicalProcess	peripheral nervous system neuron development	HOXD9 HAND2	1.47e-03	16	74	2	GO:0048935
GeneOntologyBiologicalProcess	peripheral nervous system neuron differentiation	HOXD9 HAND2	1.47e-03	16	74	2	GO:0048934
GeneOntologyBiologicalProcess	heart valve morphogenesis	DCHS1 ZFPM1 EMILIN1	1.51e-03	63	74	3	GO:0003179
GeneOntologyCellularComponent	chromatin	ALX3 FOXN1 RIF1 TCF3 RARA HOXD9 NFATC2 HOXD11 KLF1 ZMIZ2 SP6 NKX1-1 EVX1 LHX5 POU5F1B ZFPM1 RXRG HAND2 TLX2 KLF2 FOXJ1 TBX6 NKX1-2	5.45e-10	1480	73	23	GO:0000785
GeneOntologyCellularComponent	transcription regulator complex	TCF3 RARA NFATC2 GATA2 POU5F1B ZFPM1 SPEN RXRG HAND2	2.24e-04	596	73	9	GO:0005667
GeneOntologyCellularComponent	Cul4-RING E3 ubiquitin ligase complex	DCAF12L1 DCAF12L2 DCAF12	3.16e-04	38	73	3	GO:0080008
MousePheno	abnormal embryonic tissue morphology	ALX3 JAG2 PPP1R8 FOXN1 RBM12 ZNRF3 PKD1 EIF4G2 WT1 DCHS1 DIDO1 EVX1 HAND2 TLX2 KLF2 FOXJ1 TBX6	7.23e-06	1116	64	17	MP:0002085
Domain	Homeobox_CS	ALX3 HOXD9 HOXD11 NKX1-1 EVX1 LHX5 POU5F1B TLX2 NKX1-2	5.03e-08	186	74	9	IPR017970
Domain	Homeobox	ALX3 HOXD9 HOXD11 NKX1-1 EVX1 LHX5 POU5F1B TLX2 NKX1-2	3.55e-07	234	74	9	PF00046
Domain	HOMEOBOX_1	ALX3 HOXD9 HOXD11 NKX1-1 EVX1 LHX5 POU5F1B TLX2 NKX1-2	3.82e-07	236	74	9	PS00027
Domain	HOX	ALX3 HOXD9 HOXD11 NKX1-1 EVX1 LHX5 POU5F1B TLX2 NKX1-2	3.96e-07	237	74	9	SM00389
Domain	HOMEOBOX_2	ALX3 HOXD9 HOXD11 NKX1-1 EVX1 LHX5 POU5F1B TLX2 NKX1-2	4.24e-07	239	74	9	PS50071
Domain	Homeobox_dom	ALX3 HOXD9 HOXD11 NKX1-1 EVX1 LHX5 POU5F1B TLX2 NKX1-2	4.24e-07	239	74	9	IPR001356
Domain	Homeodomain-like	ALX3 TCF3 HOXD9 HOXD11 NKX1-1 EVX1 LHX5 POU5F1B TLX2 NKX1-2	7.22e-07	332	74	10	IPR009057
Domain	Homeobox_metazoa	HOXD9 HOXD11 NKX1-1 EVX1 TLX2 NKX1-2	1.51e-06	90	74	6	IPR020479
Domain	-	ALX3 HOXD9 HOXD11 EVX1 LHX5 POU5F1B TLX2 NKX1-2	1.60e-05	283	74	8	1.10.10.60
Domain	SPOC_C	DIDO1 SPEN	2.30e-04	6	74	2	IPR012921
Domain	SPOC	DIDO1 SPEN	2.30e-04	6	74	2	PF07744
Domain	WD40	DCAF12L1 RPTOR SEC31A WDFY3 DCAF12L2 DCAF12	5.65e-04	259	74	6	PF00400
Domain	WD40	DCAF12L1 RPTOR SEC31A WDFY3 DCAF12L2 DCAF12	6.76e-04	268	74	6	SM00320
Domain	WD40_repeat	DCAF12L1 RPTOR SEC31A WDFY3 DCAF12L2 DCAF12	7.30e-04	272	74	6	IPR001680
Domain	WD_REPEATS_1	DCAF12L1 RPTOR SEC31A WDFY3 DCAF12L2 DCAF12	8.18e-04	278	74	6	PS00678
Domain	WD_REPEATS_2	DCAF12L1 RPTOR SEC31A WDFY3 DCAF12L2 DCAF12	8.33e-04	279	74	6	PS50082
Domain	WD_REPEATS_REGION	DCAF12L1 RPTOR SEC31A WDFY3 DCAF12L2 DCAF12	8.33e-04	279	74	6	PS50294
Domain	WD40_repeat_dom	DCAF12L1 RPTOR SEC31A WDFY3 DCAF12L2 DCAF12	1.15e-03	297	74	6	IPR017986
Domain	-	RARA GATA2 RXRG	1.50e-03	57	74	3	3.30.50.10
Domain	Znf_NHR/GATA	RARA GATA2 RXRG	1.58e-03	58	74	3	IPR013088
Domain	-	DCAF12L1 RPTOR SEC31A WDFY3 DCAF12L2 DCAF12	2.06e-03	333	74	6	2.130.10.10
Domain	WD40/YVTN_repeat-like_dom	DCAF12L1 RPTOR SEC31A WDFY3 DCAF12L2 DCAF12	2.12e-03	335	74	6	IPR015943
Domain	HTH_motif	HOXD9 EVX1 LHX5	2.59e-03	69	74	3	IPR000047
Domain	ARM-like	RIF1 RPTOR AP3B2 WDFY3 MN1	4.35e-03	270	74	5	IPR011989
Pathway	WP_VITAMIN_A1_AND_A5X_PATHWAYS	RARA RXRG	2.14e-04	6	54	2	M48097
Pathway	WP_WHITE_FAT_CELL_DIFFERENTIATION	RARA GATA2 KLF2	2.44e-04	32	54	3	M39333
Pathway	WP_WHITE_FAT_CELL_DIFFERENTIATION	RARA GATA2 KLF2	2.67e-04	33	54	3	MM15869
Pathway	WP_DELTANOTCH_SIGNALING_PATHWAY	JAG2 TCF3 ZFPM1 SPEN	2.70e-04	82	54	4	MM15922
Pubmed	A census of human transcription factors: function, expression and evolution.	ALX3 FOXN1 TCF3 RARA HOXD9 NFATC2 HOXD11 KLF1 GATA2 SP6 WT1 EVX1 LHX5 POU5F1B ZFPM1 RXRG HAND2 TLX2 KLF2 FOXJ1 TBX6	2.50e-16	908	75	21	19274049
Pubmed	Impact of cytosine methylation on DNA binding specificities of human transcription factors.	ALX3 RARA HOXD9 NFATC2 HOXD11 GATA2 EVX1 LHX5 RXRG HAND2 TLX2 KLF2 TBX6	1.52e-10	544	75	13	28473536
Pubmed	A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract.	TCF3 RARA NFATC2 ZMIZ2 GATA2 SP6 WT1 DIDO1 LHX5 RXRG IKZF4 HAND2 KLF2 NKX1-2	3.36e-10	709	75	14	22988430
Pubmed	mTORC1 activity is essential for erythropoiesis and B cell lineage commitment.	KLF1 RPTOR GATA2 KLF2	6.51e-09	11	75	4	31729420
Pubmed	Oct4 Is a Key Regulator of Vertebrate Trunk Length Diversity.	HOXD11 POU5F1B HAND2 NKX1-2	7.54e-08	19	75	4	27453501
Pubmed	The Tlx-2 homeobox gene is a downstream target of BMP signalling and is required for mouse mesoderm development.	EVX1 TLX2 NKX1-2	9.60e-08	5	75	3	9550720
Pubmed	Signaling through retinoic acid receptors is essential for mammalian uterine receptivity and decidualization.	RARA GATA2 RTN1 RXRG HAND2	1.30e-07	55	75	5	34292881
Pubmed	Requirement for Pbx1 in skeletal patterning and programming chondrocyte proliferation and differentiation.	HOXD9 HOXD11 MMP3 HAND2	3.37e-07	27	75	4	11566859
Pubmed	Deterministic and stochastic allele specific gene expression in single mouse blastomeres.	JAG2 RIF1 HOXD9 KLF1 GATA2 LHX5 POU5F1B KLF2 TBX6	3.37e-07	424	75	9	21731673
Pubmed	An atlas of combinatorial transcriptional regulation in mouse and man.	ALX3 TCF3 RARA HOXD9 SUPT5H GATA2 WT1 LHX5 SPEN RXRG TLX2 FOXJ1	3.73e-07	877	75	12	20211142
Pubmed	Selective neuronal lineages derived from Dll4-expressing progenitors/precursors in the retina and spinal cord.	GATA2 EVX1 LHX5 RXRG	7.78e-07	33	75	4	25179941
Pubmed	A dynamic balance between ARP-1/COUP-TFII, EAR-3/COUP-TFI, and retinoic acid receptor:retinoid X receptor heterodimers regulates Oct-3/4 expression in embryonal carcinoma cells.	RARA POU5F1B RXRG	8.02e-07	9	75	3	7823919
Pubmed	The planar cell polarity gene Vangl2 is required for mammalian kidney-branching morphogenesis and glomerular maturation.	RARA HOXD11 PKD1 EIF4G2 WT1	2.03e-06	95	75	5	20843830
Pubmed	Axial Hox9 activity establishes the posterior field in the developing forelimb.	HOXD9 HOXD11 HAND2	2.09e-06	12	75	3	21383175
Pubmed	GATA-1 self-association controls erythroid development in vivo.	KLF1 GATA2 ZFPM1	2.09e-06	12	75	3	17374603
Pubmed	The notch pathway positively regulates programmed cell death during erythroid differentiation.	JAG2 KLF1 GATA2 KLF2	2.54e-06	44	75	4	17476283
Pubmed	POGZ Is Required for Silencing Mouse Embryonic β-like Hemoglobin and Human Fetal Hemoglobin Expression.	KLF1 ZFPM1 KLF2	2.71e-06	13	75	3	29898395
Pubmed	Hoxd and Gli3 interactions modulate digit number in the amniote limb.	HOXD9 HOXD11 HAND2	4.30e-06	15	75	3	17714700
Pubmed	Understanding abnormal retinoid signaling as a causative mechanism in congenital diaphragmatic hernia.	RARA WT1 RXRG	4.30e-06	15	75	3	19448158
Pubmed	Cartilage oligomeric protein, matrix metalloproteinase-3, and Coll2-1 as serum biomarkers in knee osteoarthritis: a cross-sectional study.	COMP MMP3	4.59e-06	2	75	2	29164307
Pubmed	The expression of Wilms' tumour-1 and Ca125 in invasive micropapillary carcinoma of the breast.	WT1 MUC16	4.59e-06	2	75	2	18042071
Pubmed	Association Between Plasma Level of Collagen Type III Alpha 1 Chain and Development of Strictures in Pediatric Patients With Crohn's Disease.	COL3A1 COMP	4.59e-06	2	75	2	30213581
Pubmed	Embryonic development and pattern formation.	RARA RXRG	4.59e-06	2	75	2	8801178
Pubmed	Pharmacological manipulation of the RAR/RXR signaling pathway maintains the repopulating capacity of hematopoietic stem cells in culture.	RARA RXRG	4.59e-06	2	75	2	19106195
Pubmed	Protein kinase D1 mediates synergistic MMP-3 expression induced by TNF-α and bradykinin in human colonic myofibroblasts.	PKD1 MMP3	4.59e-06	2	75	2	21867693
Pubmed	Abnormalities of extracellular matrices and transforming growth factor beta1 localization in the kidney of the hereditary nephrotic mice (ICGN strain).	COL3A1 TNS2	4.59e-06	2	75	2	10458099
Pubmed	NFAT1 promotes cell motility through MMP-3 in esophageal squamous cell carcinoma.	NFATC2 MMP3	4.59e-06	2	75	2	28024290
Pubmed	Isolation of a gene encoding a functional zinc finger protein homologous to erythroid Krüppel-like factor: identification of a new multigene family.	KLF1 KLF2	4.59e-06	2	75	2	7565748
Pubmed	Decreased production of collagen Type III in cultured smooth muscle cells from varicose vein patients is due to a degradation by MMPs: possible implication of MMP-3.	COL3A1 MMP3	4.59e-06	2	75	2	16088212
Pubmed	Nipbl and mediator cooperatively regulate gene expression to control limb development.	HOXD9 HOXD11 HAND2	5.29e-06	16	75	3	25255084
Pubmed	Calcium signaling induces partial EMT and renal fibrosis in a Wnt4mCherry knock-in mouse model.	COL3A1 PKD1 WT1 MMP3	5.39e-06	53	75	4	38653356
Pubmed	Neuron-specific inactivation of Wt1 alters locomotion in mice and changes interneuron composition in the spinal cord.	WT1 EVX1 LHX5	7.68e-06	18	75	3	30456369
Pubmed	Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins.	ZMIZ2 CSMD2 CSMD3 DCAF12	1.08e-05	63	75	4	11572484
Pubmed	Molecular cloning and characterization of the GATA1 cofactor human FOG1 and assessment of its binding to GATA1 proteins carrying D218 substitutions.	GATA2 ZFPM1	1.37e-05	3	75	2	12483298
Pubmed	Identification of two new members of the CSMD gene family.	CSMD2 CSMD3	1.37e-05	3	75	2	12906867
Pubmed	Retinoic acid-dependent activation of the polycystic kidney disease-1 (PKD1) promoter.	RARA PKD1	1.37e-05	3	75	2	18922886
Pubmed	PML::RARA and GATA2 proteins interact via DNA templates to induce aberrant self-renewal in mouse and human hematopoietic cells.	RARA GATA2	1.37e-05	3	75	2	38648485
Pubmed	mRNA expression pattern of retinoic acid and retinoid X nuclear receptor subtypes in human thyroid papillary carcinoma.	RARA RXRG	1.37e-05	3	75	2	23969901
Pubmed	Interaction of Hand2 and E2a is important for transcription of Phox2b in sympathetic nervous system neuron differentiation.	TCF3 HAND2	1.37e-05	3	75	2	21453680
Pubmed	Antagonism of FOG-1 and GATA factors in fate choice for the mast cell lineage.	GATA2 ZFPM1	1.37e-05	3	75	2	18299398
Pubmed	NONO enhances mRNA processing of super-enhancer-associated GATA2 and HAND2 genes in neuroblastoma.	GATA2 HAND2	1.37e-05	3	75	2	36416237
Pubmed	Suppression of ILC2 differentiation from committed T cell precursors by E protein transcription factors.	FOXN1 TCF3	1.37e-05	3	75	2	30898894
Pubmed	Human Pluripotent Stem Cell-Derived Multipotent Vascular Progenitors of the Mesothelium Lineage Have Utility in Tissue Engineering and Repair.	FOXN1 WT1	1.37e-05	3	75	2	30840882
Pubmed	Targeted deletion of Hand2 in cardiac neural crest-derived cells influences cardiac gene expression and outflow tract development.	TCF3 HAND2	1.37e-05	3	75	2	20144608
Pubmed	Specific Notch receptor-ligand interactions control human TCR-αβ/γδ development by inducing differential Notch signal strength.	JAG2 FOXN1	1.37e-05	3	75	2	23530123
Pubmed	GATA-1 and GATA-2 binding to 3' enhancer of WT1 gene is essential for its transcription in acute leukemia and solid tumor cell lines.	GATA2 WT1	1.37e-05	3	75	2	19212333
Pubmed	GATA-factor dependence of the multitype zinc-finger protein FOG-1 for its essential role in megakaryopoiesis.	GATA2 ZFPM1	1.37e-05	3	75	2	12077323
Pubmed	Misexpression of dHAND induces ectopic digits in the developing limb bud in the absence of direct DNA binding.	TCF3 HAND2	1.37e-05	3	75	2	12070084
Pubmed	A Preliminary Study of Combined Detection of COMP, TIMP-1, and MMP-3 in Synovial Fluid: Potential Indicators of Osteoarthritis Progression.	COMP MMP3	1.37e-05	3	75	2	32748631
Pubmed	Potentiation of GATA-2 activity through interactions with the promyelocytic leukemia protein (PML) and the t(15;17)-generated PML-retinoic acid receptor alpha oncoprotein.	RARA GATA2	1.37e-05	3	75	2	10938104
Pubmed	NFAT1 Directly Regulates IL8 and MMP3 to Promote Melanoma Tumor Growth and Metastasis.	NFATC2 MMP3	1.37e-05	3	75	2	27013197
Pubmed	MMP3 in Comparison to CA 125, HE4 and the ROMA Algorithm in Differentiation of Ovarian Tumors.	MUC16 MMP3	1.37e-05	3	75	2	27268637
Pubmed	Mutations within helix I of Twist1 result in distinct limb defects and variation of DNA binding affinities.	TCF3 HAND2	1.37e-05	3	75	2	17652084
Pubmed	Substance P enhances collagen remodeling and MMP-3 expression by human tenocytes.	COL3A1 MMP3	1.37e-05	3	75	2	22836729
Pubmed	The upregulation of Gata transcription factors family and FOG-1 in expanded and differentiated cord blood-derived CD34+ hematopoietic stem cells to megakaryocyte lineage during co-culture with cord blood mesenchymal stem cells.	GATA2 ZFPM1	1.37e-05	3	75	2	35690555
Pubmed	Cross talk between retinoic acid signaling and transcription factor GATA-2.	RARA GATA2	1.37e-05	3	75	2	15254248
Pubmed	mTORC1 in Thymic Epithelial Cells Is Critical for Thymopoiesis, T-Cell Generation, and Temporal Control of γδT17 Development and TCRγ/δ Recombination.	FOXN1 RPTOR	1.37e-05	3	75	2	26889835
Pubmed	Regulation of Hematopoiesis and Methionine Homeostasis by mTORC1 Inhibitor NPRL2.	KLF1 GATA2 ZFPM1	1.44e-05	22	75	3	26166573
Pubmed	Tcf/Lef repressors differentially regulate Shh-Gli target gene activation thresholds to generate progenitor patterning in the developing CNS.	TCF3 GATA2 EVX1	1.44e-05	22	75	3	21775418
Pubmed	A Wnt5a pathway underlies outgrowth of multiple structures in the vertebrate embryo.	HOXD11 EVX1 TBX6	1.44e-05	22	75	3	10021340
Pubmed	Pbx1/Pbx2 requirement for distal limb patterning is mediated by the hierarchical control of Hox gene spatial distribution and Shh expression.	HOXD9 HOXD11 HAND2	1.65e-05	23	75	3	16672333
Pubmed	Gata2, Nkx2-2 and Skor2 form a transcription factor network regulating development of a midbrain GABAergic neuron subtype with characteristics of REM-sleep regulatory neurons.	GATA2 LHX5 ZFPM1	1.65e-05	23	75	3	35815619
Pubmed	Mammalian SP/KLF transcription factors: bring in the family.	KLF1 SP6 KLF2	2.14e-05	25	75	3	15820306
Pubmed	Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus.	ALX3 RARA LHX5 RXRG IKZF4 NKX1-2	2.30e-05	263	75	6	20932939
Pubmed	GATA6 is a crucial regulator of Shh in the limb bud.	GATA2 ZFPM1 HAND2	2.42e-05	26	75	3	24415953
Pubmed	Arrest of WNT/β-catenin signaling enables the transition from pluripotent to differentiated germ cells in mouse ovaries.	ZNRF3 WT1 POU5F1B	2.42e-05	26	75	3	34301885
Pubmed	Distinct populations of GABAergic neurons in mouse rhombomere 1 express but do not require the homeodomain transcription factor PITX2.	GATA2 EVX1 LHX5	2.71e-05	27	75	3	21925604
Pubmed	Compartment-dependent activities of Wnt3a/β-catenin signaling during vertebrate axial extension.	HOXD11 HAND2 TBX6	2.71e-05	27	75	3	25152336
Pubmed	An innate immunity signaling process suppresses macrophage ABCA1 expression through IRAK-1-mediated downregulation of retinoic acid receptor alpha and NFATc2.	RARA NFATC2	2.75e-05	4	75	2	19752193
Pubmed	Expression of the novel murine homeobox gene Sax-1 in the developing nervous system.	EVX1 NKX1-2	2.75e-05	4	75	2	7669696
Pubmed	Loss of LKLF function results in embryonic lethality in mice.	KLF1 KLF2	2.75e-05	4	75	2	9859212
Pubmed	Identification and analysis of a conserved Tcfap2a intronic enhancer element required for expression in facial and limb bud mesenchyme.	HOXD9 HOXD11	2.75e-05	4	75	2	17984226
Pubmed	Murine genes related to the Drosophila AbdB homeotic genes are sequentially expressed during development of the posterior part of the body.	HOXD9 HOXD11	2.75e-05	4	75	2	1676674
Pubmed	Clinical significance of Gata-1, Gata-2, EKLF, and c-MPL expression in acute myeloid leukemia.	KLF1 GATA2	2.75e-05	4	75	2	19097174
Pubmed	A tight control of Rif1 by Oct4 and Smad3 is critical for mouse embryonic stem cell stability.	RIF1 POU5F1B	2.75e-05	4	75	2	25569105
Pubmed	Gene transpositions in the HoxD complex reveal a hierarchy of regulatory controls.	HOXD9 HOXD11	2.75e-05	4	75	2	8674109
Pubmed	Retinoid-dependent antagonism of serum response factor transactivation mediated by transcriptional coactivator proteins.	RARA RXRG	2.75e-05	4	75	2	11641790
Pubmed	Restraint of B cell activation by Foxj1-mediated antagonism of NF-kappa B and IL-6.	FOXN1 FOXJ1	2.75e-05	4	75	2	16002694
Pubmed	Insertion of a targeting construct in a Hoxd-10 allele can influence the control of Hoxd-9 expression.	HOXD9 HOXD11	2.75e-05	4	75	2	7894075
Pubmed	Gata2 maps to mouse chromosome 6.	GATA2 TLX2	2.75e-05	4	75	2	9021157
Pubmed	Wt1 functions in the development of germ cells in addition to somatic cell lineages of the testis.	WT1 POU5F1B	2.75e-05	4	75	2	15063178
Pubmed	Generation of mice with a conditional null allele of the Jagged2 gene.	ALX3 JAG2	2.75e-05	4	75	2	20533406
Pubmed	Disruption of local retinoid-mediated gene expression accompanies abnormal development in the mammalian olfactory pathway.	RARA RXRG	2.75e-05	4	75	2	9050783
Pubmed	Single cell evaluation of endocardial Hand2 gene regulatory networks reveals HAND2-dependent pathways that impact cardiac morphogenesis.	HAND2 KLF2	2.75e-05	4	75	2	36620995
Pubmed	Progesterone induced mesenchymal differentiation and rescued cystic dilation of renal tubules of Pkd1(-/-) mice.	PKD1 WT1	2.75e-05	4	75	2	22835934
Pubmed	Sexually dimorphic expression of Gata-2 during mouse gonad development.	GATA2 POU5F1B	2.75e-05	4	75	2	11804789
Pubmed	Rescue of cytochrome P450 oxidoreductase (Por) mouse mutants reveals functions in vasculogenesis, brain and limb patterning linked to retinoic acid homeostasis.	HOXD9 HOXD11 HAND2	3.04e-05	28	75	3	17126317
Pubmed	Single-cell transcriptomic analysis of mouse neocortical development.	COL3A1 GATA2 LHX5 RXRG FOXJ1	3.44e-05	170	75	5	30635555
Pubmed	Large-scale characterization of HeLa cell nuclear phosphoproteins.	RIF1 RPTOR EIF4G2 PI4K2A DIDO1 ZFPM1 SPEN MN1 MED13	4.33e-05	774	75	9	15302935
Pubmed	Lineage tracing of axial progenitors using Nkx1-2CreERT2 mice defines their trunk and tail contributions.	TBX6 NKX1-2	4.57e-05	5	75	2	30201686
Pubmed	GATA proteins work together with friend of GATA (FOG) and C-terminal binding protein (CTBP) co-regulators to control adipogenesis.	GATA2 ZFPM1	4.57e-05	5	75	2	20705609
Pubmed	Primary structure and embryonic expression pattern of the mouse Hox-4.3 homeobox gene.	HOXD9 HOXD11	4.57e-05	5	75	2	1982431
Pubmed	p48 subunit of mouse PTF1 binds to RBP-Jkappa/CBF-1, the intracellular mediator of Notch signalling, and is expressed in the neural tube of early stage embryos.	TCF3 SPEN	4.57e-05	5	75	2	11318877
Pubmed	Cell adhesion molecules and extracellular-matrix constituents in kidney development and disease.	PKD1 WT1	4.57e-05	5	75	2	10547347
Pubmed	Polycystin-1 and polycystin-2 regulate the cell cycle through the helix-loop-helix inhibitor Id2.	TCF3 PKD1	4.57e-05	5	75	2	16311606
Pubmed	Retinoic acid signaling is necessary for the development of the organ of Corti.	RARA RXRG	4.57e-05	5	75	2	10452855
Pubmed	Regulation of the Oct-4 gene by nuclear receptors.	RARA POU5F1B	4.57e-05	5	75	2	8152920
Pubmed	Association of erythroid transcription factors: complexes involving the LIM protein RBTN2 and the zinc-finger protein GATA1.	TCF3 GATA2	4.57e-05	5	75	2	7568177
Pubmed	Expression of murine HOXD9 during embryonic joint patterning and in human T lymphotropic virus type I tax transgenic mice with arthropathy resembling rheumatoid arthritis.	HOXD9 HOXD11	4.57e-05	5	75	2	10211882
Pubmed	Transcription Factor KLF2 in Dendritic Cells Downregulates Th2 Programming via the HIF-1α/Jagged2/Notch Axis.	JAG2 KLF2	4.57e-05	5	75	2	27302755
Cytoband	Ensembl 112 genes in cytogenetic band chr19p13	TCF3 COMP KLF1 ZFR2 MUC16 PRR22 KLF2	3.30e-04	797	75	7	chr19p13
GeneFamily	WD repeat domain containing	DCAF12L1 RPTOR SEC31A WDFY3 DCAF12L2 DCAF12	1.88e-04	262	58	6	362
GeneFamily	HOXL subclass homeoboxes	HOXD9 HOXD11 EVX1	6.19e-04	52	58	3	518
GeneFamily	NKL subclass homeoboxes and pseudogenes	NKX1-1 TLX2 NKX1-2	1.30e-03	67	58	3	519
GeneFamily	Zinc fingers C2H2-type\|Kruppel like factors	KLF1 KLF2	1.50e-03	18	58	2	624
Coexpression	BENPORATH_ES_WITH_H3K27ME3	ALX3 LRFN2 KLHL1 RARA COMP HOXD9 SAMD11 LINC02875 GATA2 WT1 EVX1 LHX5 ZFPM1 CSMD2 CSMD3 RXRG HAND2 TLX2 FOXJ1	2.27e-10	1115	75	19	M10371
Coexpression	MEISSNER_BRAIN_HCP_WITH_H3K27ME3	ALX3 HOXD9 HOXD11 WT1 EVX1 LHX5 HAND2 TLX2	1.12e-06	272	75	8	M1938
Coexpression	MEISSNER_BRAIN_HCP_WITH_H3K27ME3	ALX3 HOXD9 HOXD11 WT1 EVX1 LHX5 HAND2 TLX2	1.47e-06	282	75	8	MM822
Coexpression	BENPORATH_EED_TARGETS	ALX3 LRFN2 COMP HOXD9 HOXD11 LINC02875 GATA2 WT1 EVX1 LHX5 CSMD3 HAND2 TLX2 FOXJ1	1.59e-06	1059	75	14	M7617
Coexpression	NAKAYA_PLASMACYTOID_DENDRITIC_CELL_FLUMIST_AGE_18_50YO_7DY_DN	ALX3 JAG2 FOXN1 ZSWIM8 RIF1 CHIA RARA ZFR2 ZMIZ2 GATA2 WDFY3 RTN1 TLX2	1.67e-06	909	75	13	M41018
Coexpression	BENPORATH_PRC2_TARGETS	ALX3 COMP HOXD9 LINC02875 GATA2 WT1 LHX5 CSMD3 HAND2 TLX2 FOXJ1	2.33e-06	650	75	11	M8448
Coexpression	MIKKELSEN_NPC_HCP_WITH_H3K27ME3	ALX3 JAG2 HOXD9 NFATC2 HOXD11 EVX1 LHX5 RXRG	6.51e-06	345	75	8	M2009
Coexpression	MIKKELSEN_NPC_HCP_WITH_H3K27ME3	ALX3 JAG2 HOXD9 NFATC2 HOXD11 EVX1 LHX5 RXRG	6.79e-06	347	75	8	MM860
Coexpression	BENPORATH_SUZ12_TARGETS	ALX3 COMP HOXD9 HOXD11 LINC02875 GATA2 WT1 LHX5 CSMD3 RXRG HAND2 TLX2 FOXJ1	6.87e-06	1035	75	13	M9898
Coexpression	GSE43863_TH1_VS_LY6C_INT_CXCR5POS_EFFECTOR_CD4_TCELL_DN	JAG2 ZNRF3 PKD1 EIF4G2 IKZF4 KLF2	2.38e-05	200	75	6	M9765
ToppCell	wk_08-11-Mesenchymal-Fibroblast-Mesenchymal_3\|wk_08-11 / Celltypes from embryonic and fetal-stage human lung	COL3A1 ALX3 ZFR2 WT1 EVX1 MN1	8.80e-07	192	75	6	d88753b200d9c8da6716222d697ddf0a1548d6c8
ToppCell	5'-GW_trimst-2-LargeIntestine-Mesenchymal-fibroblastic-Stromal_1_(ADAMDEC1+)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL3A1 HOXD11 SAMD11 TNS2 CSMD3 EMILIN1	1.02e-06	197	75	6	236a40eb6c08e1d179cf0fb5450b032975c5f6b6
ToppCell	(1)_Osterolineage_cells-(11)_OLC-2\|(1)_Osterolineage_cells / Cell class and subclass of bone marrow stroma cells in homeostatis	COL3A1 COMP NFATC2 PKD1 MMP3 MN1	1.05e-06	198	75	6	9f9dcf23ffb333105263132d87b90095642294cf
ToppCell	Adult-Mesenchymal-myofibroblast_cell-D175\|Adult / Lineage, Cell type, age group and donor	COL3A1 SAMD11 PRR22 CSMD2 RXRG	7.77e-06	161	75	5	048b7dc00746987a24bf870d4d278c4183eb04a2
ToppCell	3'-GW_trimst-1.5-LargeIntestine-Mesenchymal-fibroblastic-Stromal_1_(ADAMDEC1+)\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL3A1 HOXD9 HOXD11 TNS2 CSMD3	1.01e-05	170	75	5	b5b47fe42617a4c2ebb49c8ed55db3926213a75a
ToppCell	Endothelial-B-SSc-ILD_02\|World / lung cells shred on cell class, cell subclass, sample id	HOXD9 GATA2 THEM5 DCHS1 SHANK3	1.20e-05	176	75	5	b288116a4588a1f9db9d49af92cea118937c9201
ToppCell	390C-Fibroblasts-Fibroblast-B_(Myofibroblast)\|390C / Donor, Lineage, Cell class and subclass (all cells)	COL3A1 COMP MMP3 CSMD2 EMILIN1	1.20e-05	176	75	5	852d3da0907fe87c0ef23d75a63ce07619cf0c54
ToppCell	390C-Fibroblasts-Fibroblast-B_(Myofibroblast)-\|390C / Donor, Lineage, Cell class and subclass (all cells)	COL3A1 COMP MMP3 CSMD2 EMILIN1	1.20e-05	176	75	5	d2df1e435996c51213e88270af9f928e9e09a6f5
ToppCell	10x5'-lymph-node_spleen-Hematopoietic_progenitors-Progenitor_Erythro-Mega\|lymph-node_spleen / Manually curated celltypes from each tissue	KLF1 GATA2 WT1 SHANK3 MTSS2	1.30e-05	179	75	5	957c08ad4b46eb4cc1717c45056fc3db50015fdc
ToppCell	3'-GW_trimst-2-SmallIntestine-Neuronal-neurons_B-Branch_B1_(eMN)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	ZFR2 AP3B2 RTN1 HAND2 TLX2	1.77e-05	191	75	5	73b15ffa60d592c43aaa575f1b1479d49a66dfe8
ToppCell	3'-GW_trimst-2-SmallIntestine-Neuronal-neurons_B\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	ZFR2 AP3B2 RTN1 HAND2 TLX2	1.82e-05	192	75	5	2f1c4ef693515ccc7231bd8c6641fad51d445d20
ToppCell	Children_(3_yrs)-Mesenchymal-matrix_fibroblast_2_cell-D046\|Children_(3_yrs) / Lineage, Cell type, age group and donor	COL3A1 SAMD11 WT1 MN1 EMILIN1	1.82e-05	192	75	5	e0f4e4470a71bfa81d9dcd8594e5f82aafc24f81
ToppCell	human_hepatoblastoma-Tumor_cells\|human_hepatoblastoma / Sample and Cell Type and Tumor Cluster (all cells)	ZNRF3 RPTOR DIDO1 MED13 MTSS2	1.87e-05	193	75	5	503a979328c68b096680b71359a26f02fafdff35
ToppCell	3'-GW_trimst-2-LargeIntestine-Mesenchymal-fibroblastic-Stromal_1_(ADAMDEC1+)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL3A1 HOXD9 HOXD11 TNS2 CSMD3	2.01e-05	196	75	5	a7adc0e0baef261d0937e4e8351321d41beca82f
ToppCell	Parenchymal-10x5prime-Stromal-Fibroblastic-Fibro_immune_recruiting\|10x5prime / Cell types per location group and 10X technology with lineage, and cell group designations	COL3A1 COMP SAMD11 EMILIN1 ADCY5	2.01e-05	196	75	5	614a07334707eafe238d5cb7b080a3ca796a1920
ToppCell	Tracheal-NucSeq-Stromal-Fibroblastic-Fibro_myofibroblast\|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations	COL3A1 SAMD11 CSMD2 MN1 EMILIN1	2.06e-05	197	75	5	0dd71e399f253787fa546a7e90c5373180b89ffd
ToppCell	(3)_Chondrocytes-(34)_Chondro-progen\|(3)_Chondrocytes / Cell class and subclass of bone marrow stroma cells in homeostatis	COL3A1 HOXD9 MMP3 MN1 HAND2	2.06e-05	197	75	5	012c49a57f9c2a3dfa988cd3882c8c6b7ef3a5ad
ToppCell	(2)_Fibroblasts-(23)_Fibro-4\|World / Cell class and subclass of bone marrow stroma cells in homeostatis	COL3A1 COMP HOXD9 MN1 HAND2	2.06e-05	197	75	5	a183919023a4aca90a06be0e5e89c817b38c5574
ToppCell	5'-GW_trimst-2-SmallIntestine-Neuronal-neurons_B-Branch_B1_(eMN)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	ZFR2 AP3B2 RTN1 HAND2 TLX2	2.06e-05	197	75	5	5593721407f61fc5bc3f2f8bf8fa2604c4e29565
ToppCell	3'-GW_trimst-1-LargeIntestine-Mesenchymal-immature_mesenchymal_cell-Mesoderm_2_(ZEB2+)\|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL3A1 HOXD9 HOXD11 TNS2 EMILIN1	2.06e-05	197	75	5	ad6c200a193a15360d17463e18a465ce1b90b8da
ToppCell	5'-GW_trimst-2-SmallIntestine-Mesenchymal-fibroblastic-Stromal_1_(ADAMDEC1+)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL3A1 SAMD11 TNS2 CSMD3 EMILIN1	2.11e-05	198	75	5	09be07ebfc3e49c3858e9b74605b69cf4fc28b56
ToppCell	10x5'v1-week_12-13-Endothelial-stroma\|week_12-13 / cell types per 3 fetal stages;per 3',per 5'	JAG2 HOXD9 DCHS1 TNS2 SHANK3	2.11e-05	198	75	5	122215d9288533ad03562cf777e846504863df9a
ToppCell	10x5'v1-week_12-13-Endothelial\|week_12-13 / cell types per 3 fetal stages;per 3',per 5'	JAG2 HOXD9 DCHS1 TNS2 SHANK3	2.11e-05	198	75	5	307dd09e6bc820a148f3000f18dae7aedba4be0b
ToppCell	Parenchymal-10x3prime_v2-Stromal-Mesofibroblastic\|10x3prime_v2 / Cell types per location group and 10X technology with lineage, and cell group designations	COL3A1 COMP WT1 CSMD2 EMILIN1	2.11e-05	198	75	5	0cd930e374c2c48d1991b51c025f9801b22ecee7
ToppCell	Parenchymal-10x3prime_v2-Stromal-Mesofibroblastic-Mesothelia\|10x3prime_v2 / Cell types per location group and 10X technology with lineage, and cell group designations	COL3A1 COMP WT1 CSMD2 EMILIN1	2.11e-05	198	75	5	e0df6d6ff2a9c41d813f84a2a5ee7cb5f6fc3e30
ToppCell	kidney_cells-Renal_AKI_(acute_kidney_injury)-Endothelial-blood_vessel_endothelial_cell_of_kidney-arteriolar_vasa-recta_endothelial\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	COL3A1 JAG2 DCHS1 TNS2 SHANK3	2.16e-05	199	75	5	f35e9c05d0a0339ff691b38564da7aad8e9218aa
ToppCell	distal-2-mesenchymal-Adventitial_Fibroblast\|2 / Location, Lineage, Cell class (ontology) and Donor from 10X sequencing (macrophage renamed)	COL3A1 COMP SAMD11 WT1 HAND2	2.16e-05	199	75	5	97b475f9110ef7bb29d9cf2109b7e43177830f05
ToppCell	Bronchial-10x5prime-Stromal-Fibroblastic-Fibro_peribronchial\|10x5prime / Cell types per location group and 10X technology with lineage, and cell group designations	COL3A1 COMP SAMD11 MMP3 EMILIN1	2.16e-05	199	75	5	e1f1950d6f840485e263b83dc81b98910be3ae7a
ToppCell	renal_papilla_nuclei-Hypertensive_with+without-CKD-Epithelial-Intermediate_tubule_epithelial_cell-kidney_loop_of_Henle_thin_ascending_limb_epithelial_cell-Ascending_Thin_Limb_Cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	CHIA ZNRF3 ADCY5 OPLAH	7.11e-05	131	75	4	72340ea139a6616a466b417949e273f473fba993
ToppCell	368C-Lymphocytic-CD8+_Cytotoxic_T-cell\|Lymphocytic / Donor, Lineage, Cell class and subclass (all cells)	ZSWIM8 LRFN2 KLF2 TBX6	1.14e-04	148	75	4	e7bbb5ddf44b11b8495e83863fbf1fd9f3f24472
ToppCell	mild_COVID-19_(asymptomatic)-CD8+_T_naive\|World / disease group, cell group and cell class (v2)	ZNRF3 DCHS1 MTSS2 TBX6	1.26e-04	152	75	4	f944743f40ff6ed3a7a096dd53e12d3526c67c4d
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Neural-neural_cell-Schwann_Cell_/_Neural-\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	KLHL1 SP6 RXRG HAND2	1.33e-04	154	75	4	30cb4bb297fa815adb829f3b5cafca56fcbcb810
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Neural-neural_cell-Schwann_Cell_/_Neural\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	KLHL1 SP6 RXRG HAND2	1.33e-04	154	75	4	ade094e2947761a0a34daa8fcff3e9ea8437e4a5
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Neural\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	KLHL1 SP6 RXRG HAND2	1.33e-04	154	75	4	42bd8f88fd075a2d4edde394785decad88a2660a
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Neural-neural_cell\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	KLHL1 SP6 RXRG HAND2	1.33e-04	154	75	4	6425d9861148586466febd6eceae1b1f9b9a14c1
ToppCell	10x5'-GI_small-bowel-Lymphocytic_T_CD4/8-lo-Tgd_CRTAM\|GI_small-bowel / Manually curated celltypes from each tissue	SP6 EMILIN1 IKZF4 KLF2	1.36e-04	155	75	4	1c67f58ed79331addbc012dab0cb09a7f350aedb
ToppCell	PND07-28-samps-Mesenchymal-Mesothelial\|PND07-28-samps / Age Group, Lineage, Cell class and subclass	WT1 MUC16 LCT DCAF12L2	1.40e-04	156	75	4	574f761962a7dd3308bd41fc529dd3ea1b8625f8
ToppCell	PND07-28-samps-Mesenchymal-Mesothelial-Mesothelial\|PND07-28-samps / Age Group, Lineage, Cell class and subclass	WT1 MUC16 LCT DCAF12L2	1.40e-04	156	75	4	605d95a900e1443d3f6aae163ef2e893d3293203
ToppCell	frontal_cortex-Non-neuronal-leptomeningeal_cell-VLMC-VLMC_Spp1_Col15a1\|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	COL3A1 ALX3 TNS2 EMILIN1	1.50e-04	159	75	4	34c90711c5857cf6ada7b3acff99f1d48c7caf29
ToppCell	390C-Fibroblasts-Fibroblast-B_(Myofibroblast)-\|Fibroblasts / Donor, Lineage, Cell class and subclass (all cells)	ZFPM1 MMP3 CSMD2 TBX6	1.54e-04	160	75	4	636127753e3a22831f39d4c8170df40901e4329d
ToppCell	droplet-Liver-Hepatocytes-24m-Lymphocytic-B_cell\|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	KLF1 SAMD11 GATA2 PRR22	1.54e-04	160	75	4	9f24ee4fe1ba4590dce5dd4d43707fb007dca82f
ToppCell	390C-Fibroblasts-Fibroblast-B_(Myofibroblast)\|Fibroblasts / Donor, Lineage, Cell class and subclass (all cells)	ZFPM1 MMP3 CSMD2 TBX6	1.54e-04	160	75	4	cb8d0dc1a6c69c7a85c5fdd8f0f6cca1b73dfc63
ToppCell	droplet-Liver-Hepatocytes-24m-Lymphocytic-B_cell\|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	KLF1 SAMD11 GATA2 PRR22	1.54e-04	160	75	4	3b3b99305558f5b49d050fb9b249007630ea9085
ToppCell	Striatum-Endothelial-MURAL-M1(Rgs5Acta2)-M1_3\|Striatum / BrainAtlas - Mouse McCarroll V32	COL3A1 ALX3 SP6 EMILIN1	1.69e-04	164	75	4	e24b06a14565f7798ac50c2fe3f34d4547b9000e
ToppCell	Children_(3_yrs)-Mesenchymal-airway_smooth_muscle_cell-D046\|Children_(3_yrs) / Lineage, Cell type, age group and donor	COL3A1 LINC02875 EMILIN1 ADCY5	1.69e-04	164	75	4	e3983f655cdba308fb192182829f17bef99ce0ba
ToppCell	3'-GW_trimst-1-LargeIntestine-Mesenchymal-fibroblastic-Stromal_3_(KCNN3+)\|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	RBM12 RPTOR DCAF12L2 MN1	1.69e-04	164	75	4	d167c7a987b9b35d1e7725c803df4f9cd5380e47
ToppCell	Globus_pallidus-Endothelial-ENDOTHELIAL_TIP-Dcn_1\|Globus_pallidus / BrainAtlas - Mouse McCarroll V32	COL3A1 ALX3 COMP EMILIN1	1.73e-04	165	75	4	570483b43ccb5831feec9337b4664814431d40b1
ToppCell	Globus_pallidus-Endothelial-ENDOTHELIAL_TIP\|Globus_pallidus / BrainAtlas - Mouse McCarroll V32	COL3A1 ALX3 COMP EMILIN1	1.73e-04	165	75	4	2026a9a07f4d314cc05c167e491312b373468e46
ToppCell	356C-Endothelial_cells-Endothelial-F_(Lymphatics)-\|356C / Donor, Lineage, Cell class and subclass (all cells)	HOXD9 GATA2 THEM5 SHANK3	1.77e-04	166	75	4	5ba45407a47207ff01e4a3f9f5d91d8247fe9b6f
ToppCell	356C-Endothelial_cells-Endothelial-F_(Lymphatics)\|356C / Donor, Lineage, Cell class and subclass (all cells)	HOXD9 GATA2 THEM5 SHANK3	1.77e-04	166	75	4	6bd5aa205b6e4b88ba9f8cd0999e2191d7d1d16c
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Mesenchymal-Myocytic_interstitial_cell-Degenerative_Vascular_Smooth_Muscle_Cell\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	COMP SAMD11 LINC02875 SP6	1.81e-04	167	75	4	4ae9f2c5df13463709ea880ab035965fd99e7626
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Mesenchymal-Myocytic_interstitial_cell-Degenerative_Vascular_Smooth_Muscle_Cell-\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	COMP SAMD11 LINC02875 SP6	1.81e-04	167	75	4	4e58f9bf1e9d47720c871776ec34513ded4de9b7
ToppCell	kidney_cells-Hypertensive_with+without-CKD-Epithelial-Collecting_tubule_epithelial_cell-kidney_collecting_duct_principal_cell-Outer_Medullary_Collecting_Duct_Principal_Cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	SAMD11 RECQL5 GATA2 CDH16	1.94e-04	170	75	4	928e42c51a7079c506f21c669c4e4c1a0df84d77
ToppCell	wk_08-11-Epithelial-Airway_epithelial_progenitor-epi-prox-progenitor-MUC5AC+ASCL1+_intermediate_\|wk_08-11 / Celltypes from embryonic and fetal-stage human lung	CHIA GGT6 SP6 FOXJ1	1.94e-04	170	75	4	d6e244725b21592c6056b9c443aac090f1eae836
ToppCell	5'-GW_trimst-1.5-LargeIntestine-Mesenchymal-fibroblastic-Stromal_1_(ADAMDEC1+)\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	HOXD9 HOXD11 CSMD3 KLF2	1.94e-04	170	75	4	a7184dc41f90caa753860ed0f65a18133f84bc5f
ToppCell	mild-Others-CD34+_GATA2+_cells\|mild / Cohort 2 (Rhapsody WB + PBMC) with disease condition, lineage and cell classs	KLF1 GATA2 MN1 SHANK3	2.03e-04	172	75	4	379f6f271e653d5e404851e51a189bd582bb0f43
ToppCell	Fetal_29-31_weeks-Endothelial-endothelial_cell_of_artery-D062\|Fetal_29-31_weeks / Lineage, Cell type, age group and donor	JAG2 GATA2 SHANK3 KLF2	2.03e-04	172	75	4	de9b11ab109d04937186c09772cec9105a935f95
ToppCell	Transplant_Alveoli_and_parenchyma-Epithelial-Basal_1\|Epithelial / Tissue, Lineage and Cell class of Lung Cells from 10X	CDIP1 GGT6 ZFPM1 EMILIN1	2.03e-04	172	75	4	b66dbfff5e4f53ca8ece91ff9c5dc66a71f07c63
ToppCell	5'-Adult-LargeIntestine-Epithelial-neuro-epithelial-L_cells_(PYY+)\|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract	LRFN2 KLHL1 AP3B2 RTN1	2.07e-04	173	75	4	9a3500b06d00d1d4ee42910a3a73327b21beab52
ToppCell	PND03-Mesenchymal-Mesenchymal_structural-Fibroblastic-Mesothelial\|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL3A1 WT1 MUC16 DCAF12L2	2.07e-04	173	75	4	30d67738633493d47f06ae452424382f069b6c0a
ToppCell	PND01-03-samps-Endothelial-Postnatal_endothelial-capillary_endothelial_Hpgd-CA4_high\|PND01-03-samps / Age Group, Lineage, Cell class and subclass	TCF3 AP3B2 GATA2 KLF2	2.12e-04	174	75	4	cb0109661e8c9ca04d67d33f2d926f0e649bf67d
ToppCell	3'_v3-lymph-node_spleen-Hematopoietic_progenitors\|lymph-node_spleen / Manually curated celltypes from each tissue	KLF1 GATA2 MN1 SHANK3	2.12e-04	174	75	4	6d9bdf4d28ff8ebb66ffd1ccdd6a4fe9440a83f3
ToppCell	5'-Adult-LargeIntestine-Epithelial-neuro-epithelial\|Adult / Celltypes from developing, pediatric, Crohn's, & adult GI tract	KLHL1 SAMD11 AP3B2 RTN1	2.12e-04	174	75	4	9f114e61458659005b6d0b4aa30a7a059e7aa5c6
ToppCell	PND03-Mesenchymal-Mesenchymal_structural-Fibroblastic-Mesothelial-Mesothelial_mature\|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL3A1 WT1 MUC16 DCAF12L2	2.12e-04	174	75	4	a9c6edf5c3fc119c24425f921c5566a8356c30fe
ToppCell	5'-GW_trimst-2-LargeIntestine-Neuronal-neurons_A\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	AP3B2 RTN1 HAND2 TLX2	2.21e-04	176	75	4	116741fef5895ca85057d2d31eca9eba5764ab44
ToppCell	PND01-Mesenchymal-Mesenchymal_structural-Fibroblastic-Mesothelial\|PND01 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL3A1 WT1 MUC16 DCAF12L2	2.21e-04	176	75	4	8e7f38de8bf68077e2138f4d06c1f55b0fd096cc
ToppCell	PND01-Mesenchymal-Mesenchymal_structural-Fibroblastic-Mesothelial-Mesothelial_mature\|PND01 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL3A1 WT1 MUC16 DCAF12L2	2.21e-04	176	75	4	ed575330a08a6748ea4b28433292c8cfd157d444
ToppCell	5'-GW_trimst-2-LargeIntestine-Neuronal-neurons_A-Branch_A1_(iMN)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	AP3B2 RTN1 HAND2 TLX2	2.21e-04	176	75	4	5b707f58d164ee7a6a527dd5d053472ce9a631c1
ToppCell	Fetal_29-31_weeks-Endothelial-endothelial_cell_of_artery\|Fetal_29-31_weeks / Lineage, Cell type, age group and donor	JAG2 GATA2 SHANK3 KLF2	2.26e-04	177	75	4	5ff8dcfb030312126695d53a026d2e104a401b83
ToppCell	343B-Fibroblasts-Fibroblast-B_(Myofibroblast)\|343B / Donor, Lineage, Cell class and subclass (all cells)	COL3A1 COMP SAMD11 MMP3	2.26e-04	177	75	4	e55d21d4d61a069b9bbe0e7595fbfb7cfbacfd87
ToppCell	343B-Fibroblasts-Fibroblast-B_(Myofibroblast)-\|343B / Donor, Lineage, Cell class and subclass (all cells)	COL3A1 COMP SAMD11 MMP3	2.26e-04	177	75	4	43ba6f12c2fb32698a420bf799d46ac1b558f146
ToppCell	severe_COVID-19-HSPC\|World / disease group, cell group and cell class (v2)	SAMD11 GATA2 LCT SHANK3	2.26e-04	177	75	4	289f6aed6f054b04b01659434d8c8b467d1bf5dd
ToppCell	TCGA-Ovary-Primary_Tumor-Ovarian_Carcinoma-Serous_Cystadenocarcinoma-6\|TCGA-Ovary / Sample_Type by Project: Shred V9	COL3A1 DCHS1 EMILIN1 HAND2	2.31e-04	178	75	4	142879e9393e721f9b05a6bb46995c9d6d713c95
ToppCell	E16.5-Mesenchymal-Mesenchymal_structural-Fibroblastic-Mesothelial-Mesothelial_mature\|E16.5 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL3A1 DCAF12L1 WT1 MUC16	2.31e-04	178	75	4	a107dd98a07086ed0429116095ecda60c9dbef1e
ToppCell	5'-GW_trimst-1.5-LargeIntestine-Endothelial-blood_vessel_EC-Mature_venous_EC\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	JAG2 GATA2 SHANK3 KLF2	2.31e-04	178	75	4	60263c0bb9de3a57ba2ba543262a2ace0066fd85
ToppCell	Posterior_cortex-Endothelial-ENDOTHELIAL_TIP\|Posterior_cortex / BrainAtlas - Mouse McCarroll V32	COL3A1 ALX3 COMP EMILIN1	2.31e-04	178	75	4	cda7695411655bd6d0ba69e5041ca7530a9dad3a
ToppCell	E16.5-Mesenchymal-Mesenchymal_structural-Fibroblastic-Mesothelial-Mesothelial_G2M\|E16.5 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL3A1 WT1 ADCY5 HAND2	2.36e-04	179	75	4	adf8b025032a03dbb58871a92025cd7efbeb22ff
ToppCell	TCGA-Adrenal-Primary_Tumor-Pheochromocytoma-Pheochromocytoma-1\|TCGA-Adrenal / Sample_Type by Project: Shred V9	SAMD11 AP3B2 THEM5 RXRG	2.36e-04	179	75	4	431e1b29015ec817f778499106d24b19cfc825ae
ToppCell	5'-GW_trimst-1-SmallIntestine-Endothelial-blood_vessel_EC\|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	JAG2 GATA2 SHANK3 KLF2	2.41e-04	180	75	4	af7c4b9f1a0ddd894085cf93c29a6d253a7d077c
ToppCell	kidney_cells-Renal_AKI_(acute_kidney_injury)-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	COL3A1 SAMD11 WT1 EMILIN1	2.41e-04	180	75	4	c2746092ef251e9d5910fe96461afdd0624a24c6
ToppCell	5'-GW_trimst-1-SmallIntestine-Endothelial\|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	JAG2 GATA2 SHANK3 KLF2	2.41e-04	180	75	4	e35e9159f5cd9ec905b3b6e27d938158aeb9c51c
ToppCell	kidney_cells-Renal_AKI_(acute_kidney_injury)-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast-Adaptive_/_Maladaptive_/_Repairing_Fibroblast\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	COL3A1 SAMD11 WT1 EMILIN1	2.41e-04	180	75	4	32c6a3886428d82fb4355d987c6d2645f333447b
ToppCell	15-Distal-Epithelial-Epithelial\|Distal / Age, Tissue, Lineage and Cell class	KLF1 MN1 RTN1 HAND2	2.41e-04	180	75	4	99e2db9ad8e09fedc3542233553acece69f579f1
ToppCell	facs-Heart-RA-24m-Endothelial\|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	COMP GATA2 WT1 KLF2	2.41e-04	180	75	4	174c643e046646e3b305dd7e5b120d2c9a46690f
ToppCell	3'_v3-bone_marrow-Hematopoietic_Erythro-Mega-Erythrocytic-Meg\|bone_marrow / Manually curated celltypes from each tissue	GATA2 WT1 EMILIN1 SHANK3	2.41e-04	180	75	4	44ba37bead1ac39bce4d3eef00961063c50ced0d
ToppCell	390C-Fibroblasts-Fibroblast-G\|390C / Donor, Lineage, Cell class and subclass (all cells)	COL3A1 COMP MMP3 EMILIN1	2.41e-04	180	75	4	137fc14859c89e1ecd98bee388bb58c04b835847
ToppCell	390C-Fibroblasts-Fibroblast-G-\|390C / Donor, Lineage, Cell class and subclass (all cells)	COL3A1 COMP MMP3 EMILIN1	2.41e-04	180	75	4	cd6790de050151fedfa2c5ea6ad58b72665414b2
ToppCell	5'-GW_trimst-1.5-LargeIntestine-Endothelial-blood_vessel_EC-Fetal_arterial_EC\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	JAG2 GATA2 SHANK3 KLF2	2.46e-04	181	75	4	9bfd93cf053beaee806cacdffd7abef02f94aec6
ToppCell	PND28-Mesenchymal-Mesenchymal_structural-Fibroblastic-Mesothelial-Mesothelial_mature\|PND28 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL3A1 SAMD11 WT1 MUC16	2.46e-04	181	75	4	330d4322f4c4373f706273c1f4e218b59051b7fd
ToppCell	-Myositis-ILD_01\|World / lung cells shred on cell class, cell subclass, sample id	COL3A1 NFATC2 GATA2 WT1	2.46e-04	181	75	4	ef579e958f334da0f9415aa7e3d5c02c807954a6
ToppCell	PND28-Mesenchymal-Mesenchymal_structural-Fibroblastic-Mesothelial\|PND28 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL3A1 SAMD11 WT1 MUC16	2.46e-04	181	75	4	3f4d5d79c1286614514b0e8134079d6128a2a23e
ToppCell	3'-GW_trimst-1.5-SmallIntestine-Neuronal-neurons_B-Branch_B1_(eMN)\|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	AP3B2 RTN1 HAND2 TLX2	2.46e-04	181	75	4	7f99002a6411117cc2361334c7c9228e20c574b4
ToppCell	Pericytes-Cryobiopsy_01\|World / lung cells shred on cell class, cell subclass, sample id	COL3A1 MN1 ADCY5 HAND2	2.52e-04	182	75	4	46c213597445b1f4f09dc367f27702d24b201daf
ToppCell	NS-moderate-d_16-33-Lymphoid-NK\|d_16-33 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)	COL3A1 DCHS1 MMP3 EMILIN1	2.52e-04	182	75	4	fb503f8ecd013f1f2161a5841572b57cfcddb6fa
ToppCell	E16.5-Mesenchymal-Mesenchymal_structural-Fibroblastic-Mesothelial\|E16.5 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	COL3A1 DCAF12L1 WT1 MUC16	2.52e-04	182	75	4	9966f42c338cbd471efa8ffc765a6ce93693aa75
ToppCell	3'-Distal_airway-Mesenchymal-Fibroblastic-fibroblastic_type_1-Adventitial_fibroblasts-Adventitial_fibroblasts_L.2.1.0.0\|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	COMP SAMD11 WT1 EMILIN1	2.57e-04	183	75	4	2beb5414958d38a5341870d55229f3b1707e76bf
ToppCell	PND14-Endothelial-Endothelial_blood-vessel-Microvascular_EC-CAP2-CAP2_prolif\|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	RARA PKD1 TNS2 MED13	2.57e-04	183	75	4	3ef9ac1ae13b6172f9121ab1c129ecaa0fef460f
ToppCell	3'-Child09-12-SmallIntestine-Mesenchymal-myocytic-myofibroblast\|Child09-12 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	COL3A1 SAMD11 DCAF12L2 EMILIN1	2.57e-04	183	75	4	6b5eef96b28911c752a8b6c0975918c4572cec38
ToppCell	3'_v3-bone_marrow-Hematopoietic_progenitors-Progenitor_MEMP\|bone_marrow / Manually curated celltypes from each tissue	KLF1 GATA2 WT1 SHANK3	2.62e-04	184	75	4	b81a2a95944cee8fec13d63dc0d95496e67aa937
ToppCell	facs-Lung-24m-Mesenchymal-fibroblast-adventitial_fibroblast-adventitial_fibroblast_l17\|24m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	COL3A1 COMP MMP3 MN1	2.62e-04	184	75	4	d754c3de621429b220ae4ac426cdfc619e848462
Disease	neutrophil percentage of leukocytes	ZNRF3 KLF1 GATA2 SEC31A LCT ADCY5 DCAF12 KLF2	1.45e-04	610	74	8	EFO_0007990
Disease	Familial thoracic aortic aneurysm and aortic dissection	COL3A1 PKD1 EMILIN1	3.24e-04	53	74	3	C4707243
Disease	Drugs used in diabetes use measurement	LRFN2 ZNRF3 NFATC2 SP6 ADCY5	4.59e-04	255	74	5	EFO_0009924
Disease	myeloid leukemia (is_implicated_in)	GATA2 MN1	4.75e-04	13	74	2	DOID:8692 (is_implicated_in)
Disease	body fat percentage, type 2 diabetes mellitus	SP6 ADCY5	8.24e-04	17	74	2	EFO_0007800, MONDO_0005148
Disease	creatinine measurement	JAG2 DCAF12L1 HOXD11 LINC02875 AP3B2 SP6 PRR22 OPLAH DCAF12	8.43e-04	995	74	9	EFO_0004518
Disease	Schizophrenia	RBM12 SHANK3	9.25e-04	18	74	2	cv:C0036341
Disease	waist-hip ratio	LRFN2 ZNRF3 LINC02875 PKD1 SP6 WT1 POU5F1B DCAF12L2 MN1 ADCY5	9.47e-04	1226	74	10	EFO_0004343
Disease	mean arterial pressure	ZNRF3 NFATC2 RPTOR LINC02875 TNS2 IKZF4	1.59e-03	499	74	6	EFO_0006340
Disease	monocyte count	TCF3 ZMIZ2 PKD1 THEM5 DIDO1 ZFPM1 LCT MN1 ADCY5 DCAF12	1.65e-03	1320	74	10	EFO_0005091
Disease	Sjogren's syndrome (is_marker_for)	MUC16 MMP3	1.65e-03	24	74	2	DOID:12894 (is_marker_for)
Disease	mean corpuscular hemoglobin concentration	RIF1 ZNRF3 KLF1 FAM222B ZFPM1 MN1 MED13 DCAF12 TBX6	1.75e-03	1105	74	9	EFO_0004528
Disease	response to venlafaxine	CSMD2 DCAF12	1.79e-03	25	74	2	EFO_0006328

Protein segments in the cluster

Peptide	Gene	Start	Entry
TPGPYPGPGGHTATV	CDIP1	101	Q9H305
HGPNGTVESPGFPYG	CSMD2	31	Q7Z408
GHPGSPIYGRTSGNG	CSMD3	2876	Q7Z407
GPGPALNGGHFYEGP	ALX3	76	O95076
PGYSGPTHQGVGLAF	COMP	156	P49747
LYPGPAHGLGASAGG	EVX1	331	P49640
IGAPTSGAGPAGPYA	CHIA	281	Q9BZP6
GYPHAPGGSARGSTK	ADCY5	41	O95622
GPGEPEYGHDPASGG	AP3B2	16	Q13367
GPIHIGGPPGFASSS	RBM12	836	Q9NTZ6
SSCPTPGGGHLNGYP	RARA	6	P10276
GPHFGTPGYGSPHFT	POU5F1B	316	Q06416
TGYPFSSPEPGSAGH	MUC16	261	Q8WXI7
QDHGSPAGYPPVAGS	NFATC2	286	Q13469
GGPYPRGGSLDPSHS	DCHS1	3016	Q96JQ0
GPCSYGHGATPVLGG	JAG2	86	Q9Y219
GPGNVLAHAYAPGPG	MMP3	176	P08254
AGGPLPSGLHGNYAG	DCAF12L2	446	Q5VW00
GSPSPEAAGYPGAGA	MTSS2	646	Q765P7
PGAHYRAGTGGGPVA	FAM222B	491	Q8WU58
PGSKGEIYSPGAGHP	ZFPM1	376	Q8IX07
YGTGQHPPGISDPGV	LCT	551	P09848
SPGPSGPANGRHYGI	HOXD9	146	P28356
GTSGYSGPLSHPNPE	LHX5	381	Q9H2C1
SSGGGGSRGAPQHYP	EIF4G2	16	P78344
DHSHYGGVPPGAGPP	HAND2	76	P61296
PSGSGAHFPQVPGGA	PI4K2A	21	Q9BTU6
HPGGFLGGPASSFTP	GATA2	266	P23769
PGPGAGSSGGYFPRT	KLF1	171	Q13351
AGGPLPSGLHGNYAG	DCAF12	436	Q5T6F0
VAPPPGGHSHGPGVY	GGT6	91	Q6P531
SSGSPGHPPGSAFGV	LINC02875	81	Q86X59
PGPPHGPAGAASNFY	HOXD11	151	P31277
FSGQHGPPPYGDSRG	DIDO1	1811	Q9BTC0
GYHQVPGSAAPGSPL	FOXJ1	61	Q92949
AGGPLPAGLHGNYAG	DCAF12L1	446	Q5VU92
GTSGHPGSPGSPGYQ	COL3A1	186	P02461
AGQGGHPPGYTSLAS	EMILIN1	391	Q9Y6C2
LGYCDGSGPEPHSPG	IKZF4	136	Q9H2S9
ASGHGPYSFTLGPNP	CDH16	696	O75309
YGGAPGPGCHFSIPE	PKD1	2796	P98161
PGGPPGHPYQGEAST	PLA2G4D	6	Q86XP0
SDYFPGGTAPGAPGP	MN1	876	Q10571
ALPSGYVSFGHVGGP	RTN1	426	Q16799
GGLYGGLPPTHSEAG	PPP1R8	261	Q12972
GPAGYPAHGPGGLVC	NKX1-1	401	Q15270
GSPGPPGTGALHFQT	NKX1-2	251	Q9UD57
VHKGASSPYGAPGTP	RIF1	396	Q5UIP0
HTPGGGGYGDPEDPA	OPLAH	1246	O14841
PGGGSYPIPYLGSSH	FOXN1	236	O15353
SPYGGGHALAGQTSP	SAMD11	646	Q96NU1
GAPSPGGYNPHTPGS	SUPT5H	956	O00267
SPGHPGALQAGLGGY	SP6	141	Q3SY56
SPGSHYPHGGDAGKG	MED13	2026	Q9UHV7
PGTTGPAGAQYTPHS	RPTOR	906	Q8N122
VPGGSAHYGGPSPEK	RECQL5	716	O94762
SGGPAGVPSAPGSYL	PRR22	101	Q8IZ63
PAAPAGYGGYQPHSG	ZFR2	51	Q9UPR6
YVHSTPGGSGSANPP	WDFY3	1226	Q8IZQ1
GGGPAYGPPPSLHAR	SPEN	111	Q96T58
SPGGPGGGASYSVRP	SHANK3	1551	Q9BYB0
APGATYGGVSSHTPP	TCF3	296	P15923
PGSYLEGPPGFAHGG	THEM5	146	Q8N1Q8
APPGASAYGSLGGPA	WT1	41	P19544
FPAGYGGSPGHTGST	RXRG	11	P48443
HGSGGSGYPAAPPAV	TBX6	391	O95947
PSDYPGQGSSFLGPG	ZMIZ2	741	Q8NF64
SVGSSLYPGPGLGHG	ZSWIM8	1486	A7E2V4
GPHLYEGSGPAGGEP	ZNRF3	736	Q9ULT6
PPSSGASFQHGGPGA	SEC31A	946	O94979
PHSCGSPGEGRGYPS	TNS2	806	Q63HR2
SPGEGRGYPSPGAHS	TNS2	811	Q63HR2
GASGYGPAGSLAPLP	TLX2	56	O43763
GFGAPGPGLHYAPPA	KLF2	201	Q9Y5W3
LFSHPSPSTGGPAGG	KLHL1	21	Q9NR64
AAAAGGVVPGGYSPP	LRFN2	731	Q9ULH4