Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyMolecularFunction	chromatin binding	TNRC18 MTA1 EPOP CENPF ASH1L PER1 CBX7 CHD1 CHD2 CHD3 ZFX SBNO2 DNMT3A CBX2	1.98e-06	739	83	14	GO:0003682
GeneOntologyMolecularFunction	DNA-binding transcription factor binding	SP100 SOST MTA1 CENPF BAZ2A NR4A2 PER1 NR4A3 NR4A1 TRIP12 MTDH DNMT3A	4.93e-06	582	83	12	GO:0140297
GeneOntologyMolecularFunction	histone binding	BAZ2A ZNF689 CBX7 CHD1 CHD2 CHD3 SBNO2 CBX2	1.45e-05	265	83	8	GO:0042393
GeneOntologyMolecularFunction	ATP-dependent chromatin remodeler activity	CECR2 CHD1 CHD2 CHD3	1.65e-05	37	83	4	GO:0140658
GeneOntologyMolecularFunction	RNA polymerase II-specific DNA-binding transcription factor binding	SP100 MTA1 BAZ2A NR4A2 NR4A3 NR4A1 TRIP12 MTDH DNMT3A	5.82e-05	417	83	9	GO:0061629
GeneOntologyMolecularFunction	transcription factor binding	SP100 SOST MTA1 CENPF BAZ2A NR4A2 PER1 NR4A3 NR4A1 TRIP12 MTDH DNMT3A	6.29e-05	753	83	12	GO:0008134
GeneOntologyMolecularFunction	nuclear glucocorticoid receptor binding	NR4A2 NR4A3 NR4A1	7.50e-05	20	83	3	GO:0035259
GeneOntologyMolecularFunction	RNA polymerase II cis-regulatory region sequence-specific DNA binding	ZNF384 MTA1 ZNF652 ZNF689 NR4A2 PER1 NR4A3 CHD2 NR4A1 ZNF324B ZNF524 MGA NEUROD6 ZFX DNMT3A	1.68e-04	1244	83	15	GO:0000978
GeneOntologyMolecularFunction	cis-regulatory region sequence-specific DNA binding	ZNF384 MTA1 ZNF652 ZNF689 NR4A2 PER1 NR4A3 CHD2 NR4A1 ZNF324B ZNF524 MGA NEUROD6 ZFX DNMT3A	2.12e-04	1271	83	15	GO:0000987
GeneOntologyMolecularFunction	ATP hydrolysis activity	DNAH3 HELZ2 CHD1 CHD2 CHD3 KIF3C ATP5F1A KIF3A	4.93e-04	441	83	8	GO:0016887
GeneOntologyMolecularFunction	catalytic activity, acting on DNA	NEIL1 CECR2 CHD1 CHD2 CHD3 DNMT3A	7.82e-04	262	83	6	GO:0140097
GeneOntologyMolecularFunction	RNA polymerase II transcription regulatory region sequence-specific DNA binding	ZNF384 MTA1 ZNF652 ZNF689 NR4A2 PER1 NR4A3 CHD2 NR4A1 ZNF324B ZNF524 MGA NEUROD6 ZFX DNMT3A	9.09e-04	1459	83	15	GO:0000977
GeneOntologyMolecularFunction	ATP-dependent activity	DNAH3 CECR2 HELZ2 CHD1 CHD2 CHD3 KIF3C ATP5F1A KIF3A	1.01e-03	614	83	9	GO:0140657
GeneOntologyMolecularFunction	nuclear receptor binding	BAZ2A NR4A2 NR4A3 NR4A1 TRIP12	1.10e-03	187	83	5	GO:0016922
GeneOntologyMolecularFunction	ATP-dependent activity, acting on DNA	CECR2 CHD1 CHD2 CHD3	1.95e-03	127	83	4	GO:0008094
GeneOntologyMolecularFunction	nuclear receptor activity	NR4A2 NR4A3 NR4A1	2.00e-03	60	83	3	GO:0004879
GeneOntologyMolecularFunction	ligand-activated transcription factor activity	NR4A2 NR4A3 NR4A1	2.09e-03	61	83	3	GO:0098531
GeneOntologyMolecularFunction	microtubule motor activity	DNAH3 KIF3C KIF3A	3.10e-03	70	83	3	GO:0003777
GeneOntologyBiologicalProcess	cellular response to corticotropin-releasing hormone stimulus	NR4A2 NR4A3 NR4A1	1.16e-06	6	81	3	GO:0071376
GeneOntologyBiologicalProcess	response to corticotropin-releasing hormone	NR4A2 NR4A3 NR4A1	1.16e-06	6	81	3	GO:0043435
GeneOntologyBiologicalProcess	protein-DNA complex organization	MTA1 EPOP CENPF BAZ2A CECR2 TAF7L ASH1L PER1 CBX7 CHD1 CHD2 CHD3 TRIP12 DNMT3A CBX2	6.90e-06	999	81	15	GO:0071824
GeneOntologyBiologicalProcess	chromatin organization	MTA1 EPOP BAZ2A CECR2 ASH1L PER1 CBX7 CHD1 CHD2 CHD3 TRIP12 DNMT3A CBX2	4.36e-05	896	81	13	GO:0006325
GeneOntologyBiologicalProcess	negative regulation of DNA-templated transcription	SP100 ZNF469 MTA1 CENPF BAZ2A NR4A2 PER1 CBX7 NR4A3 CHD3 ZC3H6 MTDH LARP7 SBNO2 DNMT3A CBX2	9.25e-05	1399	81	16	GO:0045892
GeneOntologyBiologicalProcess	negative regulation of RNA biosynthetic process	SP100 ZNF469 MTA1 CENPF BAZ2A NR4A2 PER1 CBX7 NR4A3 CHD3 ZC3H6 MTDH LARP7 SBNO2 DNMT3A CBX2	1.04e-04	1413	81	16	GO:1902679
GeneOntologyBiologicalProcess	chromatin remodeling	MTA1 EPOP BAZ2A CECR2 ASH1L PER1 CHD1 CHD2 CHD3 TRIP12 DNMT3A	1.47e-04	741	81	11	GO:0006338
GeneOntologyCellularComponent	chromatin	MTA1 CENPF BAZ2A CECR2 NR4A2 CBX7 NR4A3 CHD1 CHD2 CHD3 NR4A1 MGA NEUROD6 ZC3H6 SLX4 ZFX DNMT3A CBX2	1.61e-05	1480	83	18	GO:0000785
GeneOntologyCellularComponent	nuclear protein-containing complex	WDR74 SP100 MTA1 EPOP BAZ2A CECR2 GPATCH1 TAF7L CBX7 BOD1L1 CHD3 MGA SLX4 ATP5F1A LARP7 CBX2	8.91e-05	1377	83	16	GO:0140513
GeneOntologyCellularComponent	SWI/SNF superfamily-type complex	MTA1 BAZ2A CECR2 CHD3	5.82e-04	96	83	4	GO:0070603
GeneOntologyCellularComponent	heterochromatin	BAZ2A CBX7 DNMT3A CBX2	7.04e-04	101	83	4	GO:0000792
Domain	AT_hook	PRR12 BAZ2A ASH1L BOD1L1 FAM171B ZNF524 CBX2	1.83e-11	27	81	7	SM00384
Domain	AT_hook_DNA-bd_motif	PRR12 BAZ2A ASH1L BOD1L1 FAM171B ZNF524 CBX2	1.83e-11	27	81	7	IPR017956
Domain	HMGI/Y_DNA-bd_CS	PRR12 CCDC71 BAZ2A CECR2 ZNF524 CBX2	3.72e-09	31	81	6	IPR000637
Domain	AT_hook	PRR12 CCDC71 BAZ2A CECR2 ZNF524	5.70e-09	16	81	5	PF02178
Domain	Chromodomain_CS	CBX7 CHD1 CHD2 CHD3 CBX2	1.11e-08	18	81	5	IPR023779
Domain	Chromo_domain	CBX7 CHD1 CHD2 CHD3 CBX2	5.39e-08	24	81	5	IPR023780
Domain	Nuc_orph_rcpt	NR4A2 NR4A3 NR4A1	7.86e-08	3	81	3	IPR003070
Domain	Chromo	CBX7 CHD1 CHD2 CHD3 CBX2	8.29e-08	26	81	5	PF00385
Domain	CHROMO_1	CBX7 CHD1 CHD2 CHD3 CBX2	1.23e-07	28	81	5	PS00598
Domain	CHROMO_2	CBX7 CHD1 CHD2 CHD3 CBX2	1.23e-07	28	81	5	PS50013
Domain	Chromodomain-like	CBX7 CHD1 CHD2 CHD3 CBX2	2.49e-07	32	81	5	IPR016197
Domain	Chromo/shadow_dom	CBX7 CHD1 CHD2 CHD3 CBX2	2.92e-07	33	81	5	IPR000953
Domain	CHROMO	CBX7 CHD1 CHD2 CHD3 CBX2	2.92e-07	33	81	5	SM00298
Domain	BAH	TNRC18 MTA1 ASH1L	1.26e-05	11	81	3	SM00439
Domain	BAH	TNRC18 MTA1 ASH1L	1.26e-05	11	81	3	PF01426
Domain	BAH	TNRC18 MTA1 ASH1L	1.26e-05	11	81	3	PS51038
Domain	BAH_dom	TNRC18 MTA1 ASH1L	1.26e-05	11	81	3	IPR001025
Domain	DUF4208	CHD1 CHD2	5.56e-05	3	81	2	PF13907
Domain	DUF4208	CHD1 CHD2	5.56e-05	3	81	2	SM01176
Domain	DUF4208	CHD1 CHD2	5.56e-05	3	81	2	IPR025260
Domain	CBX7_C	CBX7 CBX2	1.84e-04	5	81	2	IPR033773
Domain	CBX7_C	CBX7 CBX2	1.84e-04	5	81	2	PF17218
Domain	SNF2_N	CHD1 CHD2 CHD3	3.56e-04	32	81	3	IPR000330
Domain	SNF2_N	CHD1 CHD2 CHD3	3.56e-04	32	81	3	PF00176
Domain	DNA/RNA_helicase_DEAH_CS	CHD1 CHD2 CHD3	4.65e-04	35	81	3	IPR002464
Domain	BROMODOMAIN_1	BAZ2A CECR2 ASH1L	5.49e-04	37	81	3	PS00633
Domain	DEAH_ATP_HELICASE	CHD1 CHD2 CHD3	5.94e-04	38	81	3	PS00690
Domain	Bromodomain	BAZ2A CECR2 ASH1L	5.94e-04	38	81	3	PF00439
Domain	BROMODOMAIN_2	BAZ2A CECR2 ASH1L	7.44e-04	41	81	3	PS50014
Domain	BROMO	BAZ2A CECR2 ASH1L	7.99e-04	42	81	3	SM00297
Domain	Bromodomain	BAZ2A CECR2 ASH1L	7.99e-04	42	81	3	IPR001487
Domain	-	BAZ2A CECR2 ASH1L	7.99e-04	42	81	3	1.20.920.10
Domain	zf-C4	NR4A2 NR4A3 NR4A1	1.04e-03	46	81	3	PF00105
Domain	Znf_hrmn_rcpt	NR4A2 NR4A3 NR4A1	1.04e-03	46	81	3	IPR001628
Domain	Nuclear_hrmn_rcpt	NR4A2 NR4A3 NR4A1	1.04e-03	46	81	3	IPR001723
Domain	NUCLEAR_REC_DBD_2	NR4A2 NR4A3 NR4A1	1.04e-03	46	81	3	PS51030
Domain	NUCLEAR_REC_DBD_1	NR4A2 NR4A3 NR4A1	1.04e-03	46	81	3	PS00031
Domain	ZnF_C4	NR4A2 NR4A3 NR4A1	1.04e-03	46	81	3	SM00399
Domain	-	NR4A2 NR4A3 NR4A1	1.11e-03	47	81	3	1.10.565.10
Domain	HOLI	NR4A2 NR4A3 NR4A1	1.18e-03	48	81	3	SM00430
Domain	Nucl_hrmn_rcpt_lig-bd	NR4A2 NR4A3 NR4A1	1.18e-03	48	81	3	IPR000536
Domain	Hormone_recep	NR4A2 NR4A3 NR4A1	1.18e-03	48	81	3	PF00104
Domain	-	NR4A2 NR4A3 NR4A1	1.94e-03	57	81	3	3.30.50.10
Domain	Znf_NHR/GATA	NR4A2 NR4A3 NR4A1	2.04e-03	58	81	3	IPR013088
Domain	SAM_1	USH1G CASKIN1 SHANK3	3.22e-03	68	81	3	PF00536
Domain	Znf_FYVE_PHD	BAZ2A ASH1L CHD3 DNMT3A	3.83e-03	147	81	4	IPR011011
Domain	PHD	BAZ2A ASH1L CHD3	4.24e-03	75	81	3	PF00628
Pubmed	The Nse5/6-like SIMC1-SLF2 complex localizes SMC5/6 to viral replication centers.	ZNF384 MTA1 BAZ2A GPATCH1 FNBP4 KRI1 CHD1 BOD1L1 SCAF11 CHD3 RPS10P5 MGA TRIP12 MTDH SLX4 ATP5F1A CBX2	1.65e-10	954	86	17	36373674
Pubmed	H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.	PRR12 SCAF1 PPIG MTA1 EPOP CENPF BAZ2A GPATCH1 FNBP4 SCAF11 CHD2 CHD3 NR4A1 MGA TRIP12 MTDH ATP5F1A ZFX ZNF687	3.12e-10	1294	86	19	30804502
Pubmed	The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6→ Tbr2→ Tbr1.	MTA1 EPOP BAZ2A ASH1L CHD2 CHD3 DNMT3A CBX2	5.67e-09	157	86	8	30186101
Pubmed	A dual-activity topoisomerase complex regulates mRNA translation and turnover.	PRR12 SCAF1 ZNF384 TNRC18 POMGNT2 DNAJC14 EPOP RALGPS1 CASKIN1 HELZ2 PER1 TNK2 ZNF324B ZNF687 SBNO2 CBX2	1.16e-08	1105	86	16	35748872
Pubmed	Nuclear receptors of the NR4a family are not required for the development and function of follicular T helper cells.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	25899083
Pubmed	NR4A nuclear receptors support memory enhancement by histone deacetylase inhibitors.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	22996661
Pubmed	Altered NR4A Subfamily Gene Expression Level in Peripheral Blood of Parkinson's and Alzheimer's Disease Patients.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	27159982
Pubmed	Inhibition of adipocyte differentiation by Nur77, Nurr1, and Nor1.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	18945812
Pubmed	The nuclear receptors NUR77, NURR1 and NOR1 in obesity and during fat loss.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	22143616
Pubmed	Nuclear receptors Nur77, Nurr1, and NOR-1 expressed in atherosclerotic lesion macrophages reduce lipid loading and inflammatory responses.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	16873729
Pubmed	The orphan nuclear receptor Nur77 is a determinant of myofiber size and muscle mass in mice.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	25605333
Pubmed	Induction of NR4A orphan nuclear receptor expression in macrophages in response to inflammatory stimuli.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	15964844
Pubmed	Relevance of the NR4A sub-family of nuclear orphan receptors in trophoblastic BeWo cell differentiation.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	28808448
Pubmed	The NR4A receptors Nurr1 and Nur77 are increased in human placenta from women with gestational diabetes.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	25199433
Pubmed	NR4A nuclear receptors in immunity and atherosclerosis.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	24005216
Pubmed	Minireview: What is Known about SUMOylation Among NR4A Family Members?	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	34437889
Pubmed	Stress and glucocorticoid regulation of NR4A genes in mice.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	24753204
Pubmed	Differential regulation of Nr4a subfamily nuclear receptors following mast cell activation.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	21621845
Pubmed	Heterodimerization between members of the Nur subfamily of orphan nuclear receptors as a novel mechanism for gene activation.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	10523643
Pubmed	Replicated association of the NR4A3 gene with smoking behaviour in schizophrenia and in bipolar disorder.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	20659174
Pubmed	Nuclear Receptor Subfamily 4A Signaling as a Key Disease Pathway of CD1c+ Dendritic Cell Dysregulation in Systemic Sclerosis.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	36482877
Pubmed	Nuclear receptor 4A (NR4A) family - orphans no more.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	25917081
Pubmed	FGF-8 stimulates the expression of NR4A orphan nuclear receptors in osteoblasts.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	18809462
Pubmed	NR4A transcription factors limit CAR T cell function in solid tumours.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	30814732
Pubmed	The NR4A orphan nuclear receptors: mediators in metabolism and diseases.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	25089663
Pubmed	Beta-adrenergic signaling regulates NR4A nuclear receptor and metabolic gene expression in multiple tissues.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	19465082
Pubmed	MSKs are required for the transcription of the nuclear orphan receptors Nur77, Nurr1 and Nor1 downstream of MAPK signalling.	NR4A2 NR4A3 NR4A1	1.46e-08	3	86	3	15910281
Pubmed	The in vivo Interaction Landscape of Histones H3.1 and H3.3.	ZNF384 MTA1 BAZ2A CHD1 BOD1L1 SCAF11 CHD2 CHD3 MGA TRIP12 DNMT3A CBX2	3.45e-08	608	86	12	36089195
Pubmed	Mapping the Ku Interactome Using Proximity-Dependent Biotin Identification in Human Cells.	BAZ2A GPATCH1 KRI1 BOD1L1 SCAF11 CHD3 MGA TRIP12 MTDH	3.66e-08	283	86	9	30585729
Pubmed	Characterization of the CHD family of proteins.	CHD1 CHD2 CHD3	5.83e-08	4	86	3	9326634
Pubmed	TOX and TOX2 transcription factors cooperate with NR4A transcription factors to impose CD8+ T cell exhaustion.	NR4A2 NR4A3 NR4A1	5.83e-08	4	86	3	31152140
Pubmed	Trained immunity induced by high-salt diet impedes stroke recovery.	NR4A2 NR4A3 NR4A1	5.83e-08	4	86	3	37965920
Pubmed	Nr4a receptors are essential for thymic regulatory T cell development and immune homeostasis.	NR4A2 NR4A3 NR4A1	5.83e-08	4	86	3	23334790
Pubmed	Evaluation of mRNA Expressions of TOX and NR4As in CD8+ T cells in Acute Leukemia.	NR4A2 NR4A3 NR4A1	5.83e-08	4	86	3	37961948
Pubmed	Dual function of Pin1 in NR4A nuclear receptor activation: enhanced activity of NR4As and increased Nur77 protein stability.	NR4A2 NR4A3 NR4A1	5.83e-08	4	86	3	22789442
Pubmed	Nr4a Receptors Regulate Development and Death of Labile Treg Precursors to Prevent Generation of Pathogenic Self-Reactive Cells.	NR4A2 NR4A3 NR4A1	5.83e-08	4	86	3	30089271
Pubmed	Parathyroid hormone induces the NR4A family of nuclear orphan receptors in vivo.	NR4A2 NR4A3 NR4A1	5.83e-08	4	86	3	15910753
Pubmed	Vascular endothelial growth factor-regulated gene expression in endothelial cells: KDR-mediated induction of Egr3 and the related nuclear receptors Nur77, Nurr1, and Nor1.	NR4A2 NR4A3 NR4A1	5.83e-08	4	86	3	14525795
Pubmed	Regulation of peripheral Th/Treg differentiation and suppression of airway inflammation by Nr4a transcription factors.	NR4A2 NR4A3 NR4A1	5.83e-08	4	86	3	33665581
Pubmed	Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method.	SOST MTA1 FMN1 ZNF652 ASH1L BOD1L1 CHD2 CHD3 FAM171B MGA TRIP12 MTDH SLX4 ATP5F1A SBNO2	6.37e-08	1084	86	15	11544199
Pubmed	The atypical orphan nuclear receptor DAX-1 interacts with orphan nuclear receptor Nur77 and represses its transactivation.	NR4A2 NR4A3 NR4A1	1.45e-07	5	86	3	15155786
Pubmed	Suppression of Th2 and Tfh immune reactions by Nr4a receptors in mature T reg cells.	NR4A2 NR4A3 NR4A1	1.45e-07	5	86	3	26304965
Pubmed	Retinoid X receptor heterodimerization and developmental expression distinguish the orphan nuclear receptors NGFI-B, Nurr1, and Nor1.	NR4A2 NR4A3 NR4A1	1.45e-07	5	86	3	8961274
Pubmed	Dynamic Protein Interactions of the Polycomb Repressive Complex 2 during Differentiation of Pluripotent Cells.	MTA1 EPOP CECR2 CHD1 BOD1L1 SCAF11 CHD2 CHD3 ZNF524 TRIP12	2.56e-07	469	86	10	27634302
Pubmed	NR4A receptors up-regulate the antiproteinase alpha-2 macroglobulin (A2M) and modulate MMP-2 and MMP-9 in vascular smooth muscle cells.	NR4A2 NR4A3 NR4A1	2.90e-07	6	86	3	25809189
Pubmed	Proteomics analysis of Ring1B/Rnf2 interactors identifies a novel complex with the Fbxl10/Jhdm1B histone demethylase and the Bcl6 interacting corepressor.	MTA1 CBX7 MGA ZNF687 CBX2	3.11e-07	57	86	5	17296600
Pubmed	TWIST1 and chromatin regulatory proteins interact to guide neural crest cell differentiation.	PRR12 CHD1 MGA TRIP12 ZFX CBX2	3.16e-07	109	86	6	33554859
Pubmed	Large-scale characterization of HeLa cell nuclear phosphoproteins.	SCAF1 PPIG MTA1 BAZ2A FNBP4 HELZ2 SCAF11 CHD3 TRIP12 ADARB1 ZFX ZNF687	4.60e-07	774	86	12	15302935
Pubmed	The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells.	ZNF384 TNRC18 MTA1 BOD1L1 CHD3 ATP5F1A ZNF687 CBX2	5.19e-07	282	86	8	23667531
Pubmed	Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.	SCAF1 SP100 ZNF469 MTA1 BAZ2A CECR2 TAF7L ASH1L PER1 CHD3 PCMTD1 MGA LARP7 ZNF687	5.98e-07	1116	86	14	31753913
Pubmed	Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing.	TNRC18 CAMK2N1 NEIL1 GALNT11 RALGPS1 ASH1L FNBP4 EVC RTN4RL1 TNK2 BOD1L1 SCAF11 CHD2 CHD3 ADARB1 SBNO2	6.69e-07	1489	86	16	28611215
Pubmed	Nur77 is phosphorylated in cells by RSK in response to mitogenic stimulation.	NR4A2 NR4A3 NR4A1	8.10e-07	8	86	3	16223362
Pubmed	The cell proliferation antigen Ki-67 organises heterochromatin.	WDR74 ZNF384 DNAH3 CENPF BAZ2A KRI1 SCAF11 CHD3 MGA	8.32e-07	410	86	9	26949251
Pubmed	Screen identifies bromodomain protein ZMYND8 in chromatin recognition of transcription-associated DNA damage that promotes homologous recombination.	SP100 MTA1 BAZ2A CECR2 ASH1L	1.24e-06	75	86	5	25593309
Pubmed	HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation.	WDR74 SCAF1 PPIG FNBP4 HELZ2 WDR55 KRI1 SCAF11 CHD2 CHD3 TRIP12 MTDH ATP5F1A LARP7 CBX2	1.26e-06	1371	86	15	36244648
Pubmed	ZBTB2 protein is a new partner of the Nucleosome Remodeling and Deacetylase (NuRD) complex.	SCAF1 PPIG MTA1 BAZ2A KRI1 CHD1 CHD3 ZNF687	1.68e-06	330	86	8	33301849
Pubmed	Human Antiviral Protein IFIX Suppresses Viral Gene Expression during Herpes Simplex Virus 1 (HSV-1) Infection and Is Counteracted by Virus-induced Proteasomal Degradation.	SCAF1 MTA1 BAZ2A KRI1 CHD1 LARP7 ZNF687	3.10e-06	251	86	7	28077445
Pubmed	A High-Density Map for Navigating the Human Polycomb Complexome.	MTA1 EPOP ZNF689 CBX7 BOD1L1 CHD3 MGA TRIP12 CBX2	3.88e-06	495	86	9	27705803
Pubmed	NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency.	MTA1 BAZ2A CHD3 TRIP12 ZNF687	5.95e-06	103	86	5	32744500
Pubmed	The mechanochemistry of the kinesin-2 KIF3AC heterodimer is related to strain-dependent kinetic properties of KIF3A and KIF3C.	KIF3C KIF3A	6.04e-06	2	86	2	32571914
Pubmed	Transcriptional Profiling of Monocytes Deficient in Nuclear Orphan Receptors NR4A2 and NR4A3 Reveals Distinct Signalling Roles Related to Antigen Presentation and Viral Response.	NR4A2 NR4A3	6.04e-06	2	86	2	34248958
Pubmed	Compensatory Expression of Nur77 and Nurr1 Regulates NF-κB-Dependent Inflammatory Signaling in Astrocytes.	NR4A2 NR4A1	6.04e-06	2	86	2	30111648
Pubmed	CHD1 and CHD2 are positive regulators of HIV-1 gene expression.	CHD1 CHD2	6.04e-06	2	86	2	25297984
Pubmed	Differential roles for Nr4a1 and Nr4a2 in object location vs. object recognition long-term memory.	NR4A2 NR4A1	6.04e-06	2	86	2	23161447
Pubmed	The orphan nuclear receptor Nor1/Nr4a3 is a negative regulator of β-cell mass.	NR4A3 NR4A1	6.04e-06	2	86	2	30696767
Pubmed	Fast or Slow, Either Head Can Start the Processive Run of Kinesin-2 KIF3AC.	KIF3C KIF3A	6.04e-06	2	86	2	26710851
Pubmed	Protein kinase C regulates mitochondrial targeting of Nur77 and its family member Nor-1 in thymocytes undergoing apoptosis.	NR4A3 NR4A1	6.04e-06	2	86	2	20411565
Pubmed	Nuclear receptors Nur77 and Nurr1 modulate mesenchymal stromal cell migration.	NR4A2 NR4A1	6.04e-06	2	86	2	21480782
Pubmed	NR4A3 Suppresses Lymphomagenesis through Induction of Proapoptotic Genes.	NR4A3 NR4A1	6.04e-06	2	86	2	28249906
Pubmed	Molecular signatures of thyroid follicular neoplasia.	NR4A3 NR4A1	6.04e-06	2	86	2	20668010
Pubmed	The orphan nuclear receptors NURR1 and NGFI-B modulate aromatase gene expression in ovarian granulosa cells: a possible mechanism for repression of aromatase expression upon luteinizing hormone surge.	NR4A2 NR4A1	6.04e-06	2	86	2	15486232
Pubmed	A minority of cases of acinic cell carcinoma of the salivary glands are driven by an NR4A2 rearrangement: the diagnostic utility of the assessment of NR4A2 and NR4A3 alterations in salivary gland tumors.	NR4A2 NR4A3	6.04e-06	2	86	2	36469101
Pubmed	The nuclear orphan receptor NR4A1 and NR4A3 as tumor suppressors in hematologic neoplasms.	NR4A3 NR4A1	6.04e-06	2	86	2	25410408
Pubmed	Subcellular expression pattern and clinical significance of CBX2 and CBX7 in breast cancer subtypes.	CBX7 CBX2	6.04e-06	2	86	2	37553450
Pubmed	Deficiency of the NR4A neuron-derived orphan receptor-1 attenuates neointima formation after vascular injury.	NR4A3 NR4A1	6.04e-06	2	86	2	19153266
Pubmed	Orphan Nuclear Receptor Family 4A (NR4A) Members NR4A2 and NR4A3 Selectively Modulate Elements of the Monocyte Response to Buffered Hypercapnia.	NR4A2 NR4A3	6.04e-06	2	86	2	38474099
Pubmed	HDAC inhibition by SNDX-275 (Entinostat) restores expression of silenced leukemia-associated transcription factors Nur77 and Nor1 and of key pro-apoptotic proteins in AML.	NR4A3 NR4A1	6.04e-06	2	86	2	23247046
Pubmed	Genetic evidence that formins function within the nucleus.	FMN1 FNBP4	6.04e-06	2	86	2	8798555
Pubmed	Brain region-specific disruption of Shank3 in mice reveals a dissociation for cortical and striatal circuits in autism-related behaviors.	NEUROD6 SHANK3	6.04e-06	2	86	2	29700290
Pubmed	Nur-related factor 1 and nerve growth factor-induced clone B in human adrenal cortex and its disorders.	NR4A2 NR4A1	6.04e-06	2	86	2	15292355
Pubmed	Abrogation of nuclear receptors Nr4a3 and Nr4a1 leads to development of acute myeloid leukemia.	NR4A3 NR4A1	6.04e-06	2	86	2	17515897
Pubmed	Reduced NR4A gene dosage leads to mixed myelodysplastic/myeloproliferative neoplasms in mice.	NR4A3 NR4A1	6.04e-06	2	86	2	21205929
Pubmed	Characterization of the KIF3C neural kinesin-like motor from mouse.	KIF3C KIF3A	6.04e-06	2	86	2	9450952
Pubmed	Nuclear NR4A2 (Nurr1) Immunostaining is a Novel Marker for Acinic Cell Carcinoma of the Salivary Glands Lacking the Classic NR4A3 (NOR-1) Upregulation.	NR4A2 NR4A3	6.04e-06	2	86	2	32341238
Pubmed	Multiomics integrative analysis reveals antagonistic roles of CBX2 and CBX7 in metabolic reprogramming of breast cancer.	CBX7 CBX2	6.04e-06	2	86	2	33400401
Pubmed	Identification of a new brain-specific transcription factor, NURR1.	NR4A2 NR4A1	6.04e-06	2	86	2	1491694
Pubmed	Backbone and nearly complete side-chain chemical shift assignments reveal the human uncharacterized protein CXorf51A as intrinsically disordered.	CXorf51A CXorf51B	6.04e-06	2	86	2	34415548
Pubmed	Spontaneous allelic variant in deafness-blindness gene Ush1g resulting in an expanded phenotype.	NEIL1 USH1G	6.04e-06	2	86	2	37328946
Pubmed	NR4A orphan nuclear receptor family members, NR4A2 and NR4A3, regulate neutrophil number and survival.	NR4A2 NR4A3	6.04e-06	2	86	2	28637666
Pubmed	The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis.	MTA1 CENPF CECR2 SCAF11 ZNF524 PCMTD1 ATP5F1A CBX2	6.44e-06	396	86	8	26687479
Pubmed	TIF1beta/KAP-1 is a coactivator of the orphan nuclear receptor NGFI-B/Nur77.	NR4A2 NR4A3 NR4A1	6.50e-06	15	86	3	19321449
Pubmed	Pro-prion, as a membrane adaptor protein for E3 ligase c-Cbl, facilitates the ubiquitination of IGF-1R, promoting melanoma metastasis.	WDR74 TNRC18 ASH1L NR4A2 MGA ZC3H6 SHANK3 DNMT3A TWF1 CBX2	7.98e-06	689	86	10	36543142
Pubmed	Nur77 deletion impairs muscle growth during developmental myogenesis and muscle regeneration in mice.	NR4A2 NR4A3 NR4A1	7.99e-06	16	86	3	28170423
Pubmed	Maternal bile acid transporter deficiency promotes neonatal demise.	NR4A2 NR4A3 NR4A1 GDF10	1.43e-05	59	86	4	26416771
Pubmed	The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei.	PRR12 SCAF1 MTA1 BAZ2A ZNF652 HELZ2 WDR55 CHD1 SCAF11 CHD2 ATP5F1A LARP7 ZNF687 TWF1	1.75e-05	1497	86	14	31527615
Pubmed	Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3.	NEUROD6 DNMT3A	1.81e-05	3	86	2	35604009
Pubmed	Genome-wide profiling reveals transcriptional repression of MYC as a core component of NR4A tumor suppression in acute myeloid leukemia.	NR4A3 NR4A1	1.81e-05	3	86	2	23552735
Pubmed	Essential role for DNA-PK-mediated phosphorylation of NR4A nuclear orphan receptors in DNA double-strand break repair.	NR4A2 NR4A1	1.81e-05	3	86	2	21979916
Pubmed	Angiotensin II triggers expression of the adrenal gland zona glomerulosa-specific 3β-hydroxysteroid dehydrogenase isoenzyme through de novo protein synthesis of the orphan nuclear receptors NGFIB and NURR1.	NR4A2 NR4A1	1.81e-05	3	86	2	25092869
Pubmed	Kinesin-2 KIF3AC and KIF3AB Can Drive Long-Range Transport along Microtubules.	KIF3C KIF3A	1.81e-05	3	86	2	26445448
Interaction	NUP43 interactions	SCAF1 MTA1 BAZ2A GPATCH1 ASH1L KRI1 CHD1 BOD1L1 CHD3 MGA TRIP12 SLX4 LARP7 ZFX ZNF687	4.82e-08	625	85	15	int:NUP43
Interaction	TERF2IP interactions	SP100 KBTBD6 BAZ2A CHD1 BOD1L1 SCAF11 CHD3 MGA TRIP12 SLX4 LARP7 ZNF687 DNMT3A CBX2	7.23e-08	552	85	14	int:TERF2IP
Interaction	H3-3A interactions	ZNF384 MTA1 CCDC71 BAZ2A ASH1L CBX7 CHD1 BOD1L1 SCAF11 CHD2 CHD3 MGA TRIP12 DNMT3A CBX2	4.95e-07	749	85	15	int:H3-3A
Interaction	SRSF5 interactions	WDR74 SCAF1 PPIG NEIL1 ZNF689 KRI1 TNK2 SCAF11 CHD3 ADARB1 MTDH LARP7	6.93e-07	474	85	12	int:SRSF5
Interaction	SMC5 interactions	ZNF384 MTA1 BAZ2A GPATCH1 FNBP4 KRI1 CHD1 BOD1L1 SCAF11 CHD3 RPS10P5 MGA TRIP12 MTDH SLX4 ATP5F1A CBX2	7.69e-07	1000	85	17	int:SMC5
Interaction	SNRNP40 interactions	SCAF1 ZNF384 MTA1 BAZ2A GPATCH1 KRI1 CHD1 SCAF11 CHD3 MGA MTDH LARP7 CBX2	2.54e-06	637	85	13	int:SNRNP40
Interaction	SSRP1 interactions	SCAF1 ZNF384 MTA1 CCDC71 CHD1 SCAF11 CHD2 CHD3 ADARB1 MTDH LARP7 ZNF687 CBX2	5.61e-06	685	85	13	int:SSRP1
Interaction	H3C3 interactions	ZNF384 MTA1 BAZ2A CHD1 BOD1L1 SCAF11 CHD3 MGA TRIP12 DNMT3A CBX2	7.28e-06	495	85	11	int:H3C3
Interaction	TWIST1 interactions	PRR12 CHD1 CHD3 MGA TRIP12 ZFX CBX2	7.63e-06	170	85	7	int:TWIST1
Interaction	CHD4 interactions	MTA1 BAZ2A FNBP4 KRI1 SCAF11 CHD3 NR4A1 ZNF524 TRIP12 ADARB1 MTDH SLX4 ATP5F1A LARP7 ZNF687	7.91e-06	938	85	15	int:CHD4
Interaction	KPNA1 interactions	MTA1 CENPF CECR2 BOD1L1 CHD3 NR4A1 TRIP12 SLX4 LARP7	1.71e-05	351	85	9	int:KPNA1
Interaction	ZNF330 interactions	ZNF384 KRI1 NR4A3 RSPO4 CHD1 CHD3 TRIP12 LARP7 DNMT3A CBX2	1.81e-05	446	85	10	int:ZNF330
Interaction	PYHIN1 interactions	SCAF1 ZNF384 MTA1 BAZ2A KRI1 CHD1 MGA LARP7 ZNF687	2.00e-05	358	85	9	int:PYHIN1
Interaction	H3C1 interactions	TNRC18 MTA1 BAZ2A ASH1L CBX7 WDR55 KRI1 CHD1 CHD3 MGA TRIP12 LARP7 DNMT3A CBX2	2.27e-05	901	85	14	int:H3C1
Interaction	H2BC8 interactions	ZNF384 KBTBD6 BAZ2A CHD1 SCAF11 CHD3 MGA TRIP12 ZNF687 DNMT3A CBX2	2.97e-05	576	85	11	int:H2BC8
Interaction	CENPA interactions	ZNF384 MTA1 BAZ2A KRI1 CHD1 CHD3 TRIP12 DNMT3A CBX2	3.00e-05	377	85	9	int:CENPA
Interaction	NANOG interactions	MTA1 CENPF CECR2 SCAF11 ZNF524 PCMTD1 MGA TRIP12 DNMT3A CBX2	3.45e-05	481	85	10	int:NANOG
Interaction	H2AX interactions	TNRC18 MTA1 BAZ2A NEIL1 ZNF689 KRI1 ADARB1 LARP7 ZNF687 DNMT3A CBX2	3.87e-05	593	85	11	int:H2AX
Interaction	RPL7 interactions	NEIL1 ZNF689 KRI1 CHD3 NR4A1 ADARB1 MTDH SLX4 LARP7 CBX2	4.10e-05	491	85	10	int:RPL7
Interaction	ZNF768 interactions	SP100 NEIL1 ZNF652 CECR2 ADARB1 LARP7	4.30e-05	151	85	6	int:ZNF768
Interaction	CSNK2A1 interactions	MTA1 NEIL1 FNBP4 CBX7 WDR55 CHD3 NR4A1 MGA MTDH SHANK3 ATP5F1A LARP7 ZNF687 CBX2	4.35e-05	956	85	14	int:CSNK2A1
Interaction	OASL interactions	SCAF1 NEIL1 ZNF689 ASH1L HELZ2 KRI1 LARP7	4.39e-05	223	85	7	int:OASL
Interaction	RPL3 interactions	WDR74 NEIL1 WDR55 KRI1 CHD3 ZNF324B TRIP12 ADARB1 MTDH SHANK3 SLX4 LARP7	4.89e-05	722	85	12	int:RPL3
Interaction	RPL19 interactions	WDR74 SCAF1 ZNF384 SP100 WDR55 KRI1 CHD3 ADARB1 MTDH SLX4 LARP7	7.48e-05	638	85	11	int:RPL19
Interaction	NIFK interactions	SCAF1 ZNF384 KBTBD6 NEIL1 ZNF689 KRI1 CHD3 ADARB1 LARP7	8.43e-05	431	85	9	int:NIFK
Interaction	MKI67 interactions	WDR74 ZNF384 DNAH3 CENPF BAZ2A KRI1 SCAF11 CHD3 MGA ADARB1 SLX4	8.59e-05	648	85	11	int:MKI67
Interaction	DHX57 interactions	NEIL1 ZNF689 RSPO4 ZNF324B ZNF524 LARP7 CBX2	9.47e-05	252	85	7	int:DHX57
Interaction	ZBTB2 interactions	SCAF1 PPIG MTA1 BAZ2A KRI1 CHD1 CHD3 LARP7 ZNF687	1.17e-04	450	85	9	int:ZBTB2
Interaction	TOP3B interactions	PRR12 SCAF1 ZNF384 TNRC18 POMGNT2 DNAJC14 EPOP CENPF RALGPS1 CASKIN1 HELZ2 PER1 TNK2 ZNF324B ZNF687 SBNO2 CBX2	1.17e-04	1470	85	17	int:TOP3B
Interaction	CBX5 interactions	SP100 CCDC71 ZNF689 ZNF324B MGA ADARB1 LARP7 DNMT3A	1.29e-04	356	85	8	int:CBX5
Interaction	XRCC6 interactions	TNRC18 MTA1 BAZ2A GPATCH1 KRI1 BOD1L1 SCAF11 CHD3 MGA TRIP12 ADARB1 MTDH LARP7	1.31e-04	928	85	13	int:XRCC6
Interaction	NPM1 interactions	WDR74 SCAF1 CENPF CASKIN1 WDR55 KRI1 CHD1 CHD3 ADARB1 MTDH SHANK3 SLX4 ATP5F1A LARP7 CBX2	1.36e-04	1201	85	15	int:NPM1
Interaction	H2BC21 interactions	PRR12 MTA1 CCDC71 CENPF FNBP4 SCAF11 TRIP12 ADARB1 LARP7 ZNF687 CBX2	1.61e-04	696	85	11	int:H2BC21
Interaction	RNF151 interactions	PPIG TNRC18 ZNF689 KRI1 LARP7	1.73e-04	123	85	5	int:RNF151
Interaction	UHRF2 interactions	ZNF384 CHD2 CHD3 MGA DNMT3A CBX2	2.02e-04	200	85	6	int:UHRF2
Interaction	USP36 interactions	WDR74 WDR55 KRI1 CHD1 CHD3 ADARB1 MTDH SLX4 ATP5F1A LARP7	2.11e-04	599	85	10	int:USP36
Interaction	CBX1 interactions	PRR12 SP100 CCDC71 NEXMIF CHD3 MGA DNMT3A	2.16e-04	288	85	7	int:CBX1
Interaction	POLR1G interactions	ZNF384 KRI1 CHD1 CHD2 MGA TRIP12 LARP7 DNMT3A CBX2	2.18e-04	489	85	9	int:POLR1G
Interaction	YTHDC2 interactions	NEIL1 NXPH1 CC2D2A ZNF324B ADARB1 LARP7	2.31e-04	205	85	6	int:YTHDC2
Interaction	RPF1 interactions	WDR74 NEIL1 ZNF689 ZNF324B ADARB1	2.41e-04	132	85	5	int:RPF1
Interaction	ZNF827 interactions	SP100 MTA1 CHD3	2.44e-04	29	85	3	int:ZNF827
Interaction	MEGF11 interactions	MTDH SHANK3	2.61e-04	6	85	2	int:MEGF11
Interaction	SRSF6 interactions	WDR74 SCAF1 PPIG ZNF689 KRI1 SCAF11 CHD3 MTDH LARP7	2.68e-04	503	85	9	int:SRSF6
Interaction	BCOR interactions	SP100 CBX7 SCAF11 CHD3 MGA SLX4 CBX2	2.88e-04	302	85	7	int:BCOR
Interaction	C7orf50 interactions	SP100 NEIL1 CHD3 ADARB1 MTDH LARP7	3.21e-04	218	85	6	int:C7orf50
Interaction	CIT interactions	SCAF1 ZNF384 CENPF ASH1L KRI1 CHD1 BOD1L1 SCAF11 CHD2 CHD3 PCMTD1 TRIP12 MTDH SHANK3 ATP5F1A ZNF687	3.27e-04	1450	85	16	int:CIT
Interaction	PLCD4 interactions	KBTBD6 ZNF687 CBX2	3.29e-04	32	85	3	int:PLCD4
Interaction	CHD3 interactions	MTA1 EPOP FNBP4 KRI1 SCAF11 CHD3 NR4A1 ADARB1 MTDH ATP5F1A ZNF687	3.31e-04	757	85	11	int:CHD3
Interaction	RBM19 interactions	NEIL1 ZNF689 KRI1 ZNF524 ADARB1 LARP7	3.45e-04	221	85	6	int:RBM19
Interaction	MEN1 interactions	PRR12 ZNF384 BAZ2A GPATCH1 FNBP4 KRI1 CHD1 BOD1L1 SCAF11 CHD3 TRIP12 MTDH ZNF687	3.59e-04	1029	85	13	int:MEN1
Interaction	PARP1 interactions	SCAF1 ZNF384 MTA1 CECR2 KRI1 CHD1 SCAF11 CHD3 MGA TRIP12 SLX4 ATP5F1A LARP7 DNMT3A CBX2	3.66e-04	1316	85	15	int:PARP1
Interaction	SMC1A interactions	PRR12 MTA1 CHD2 CHD3 MGA ADARB1 SLX4 LARP7	3.83e-04	418	85	8	int:SMC1A
Interaction	DSCR9 interactions	ASH1L NR4A2 NEUROD6 TRIP12 KIF3A	3.96e-04	147	85	5	int:DSCR9
Interaction	RPL11 interactions	WDR74 KBTBD6 NEIL1 ZNF689 CHD3 TRIP12 ADARB1 MTDH SLX4 LARP7	4.13e-04	652	85	10	int:RPL11
Interaction	RPS27A interactions	TNRC18 EPOP CHD3 RPS10P5 ZNF324B ADARB1 SHANK3 SLX4 LARP7	4.26e-04	536	85	9	int:RPS27A
Interaction	H1-4 interactions	WDR74 SCAF1 SP100 TNRC18 HELZ2 KRI1 SCAF11 CHD3 NR4A1 LARP7	4.33e-04	656	85	10	int:H1-4
Interaction	CTR9 interactions	CHD1 CHD2 CHD3 SLX4 LARP7 DNMT3A	4.57e-04	233	85	6	int:CTR9
Interaction	HIC1 interactions	MTA1 CHD3 DNMT3A	4.68e-04	36	85	3	int:HIC1
Interaction	NOL12 interactions	NEIL1 ZNF689 KRI1 ADARB1 LARP7	4.75e-04	153	85	5	int:NOL12
Interaction	PHC1 interactions	SP100 CBX7 MGA CBX2	4.81e-04	86	85	4	int:PHC1
Interaction	H1-2 interactions	SCAF1 SP100 EPOP NEIL1 KRI1 BOD1L1 CHD3 NR4A1 ZC3H6 LARP7	4.88e-04	666	85	10	int:H1-2
Interaction	RPL14 interactions	SCAF1 PPIG SCAF11 CHD3 RPS10P5 ADARB1 MTDH SLX4 LARP7	5.41e-04	554	85	9	int:RPL14
Interaction	MDK interactions	PPIG TNRC18 BOD1L1 SHANK3	5.96e-04	91	85	4	int:MDK
Interaction	ASF1A interactions	ZNF384 MTA1 CENPF MGA ZNF687 CBX2	6.49e-04	249	85	6	int:ASF1A
Interaction	ACTC1 interactions	MTA1 CENPF FNBP4 BOD1L1 CHD3 ADARB1 SLX4 ATP5F1A LARP7 TWF1	6.71e-04	694	85	10	int:ACTC1
Interaction	RPL17 interactions	WDR74 SCAF1 NEIL1 ZNF689 KRI1 CHD3 RPS10P5 ADARB1 LARP7	6.71e-04	571	85	9	int:RPL17
Interaction	BEND7 interactions	PPIG CHD2 CHD3 ADARB1	6.73e-04	94	85	4	int:BEND7
GeneFamily	PHD finger proteins	SP100 BAZ2A ASH1L CHD3	1.29e-04	90	52	4	88
GeneFamily	Chromobox family	CBX7 CBX2	2.25e-04	8	52	2	976
GeneFamily	Nuclear hormone receptors	NR4A2 NR4A3 NR4A1	3.77e-04	49	52	3	71
GeneFamily	PHD finger proteins\|NuRD complex	MTA1 CHD3	5.26e-04	12	52	2	1305
GeneFamily	Sterile alpha motif domain containing	USH1G CASKIN1 SHANK3	2.07e-03	88	52	3	760
GeneFamily	Ataxins\|Trinucleotide repeat containing	ZNF384 TNRC18	2.33e-03	25	52	2	775
GeneFamily	Zinc fingers C2H2-type\|ZF class homeoboxes and pseudogenes	ZNF384 ZNF469 ZNF652 ZNF689 ZNF324B ZNF524 ZFX	4.27e-03	718	52	7	28
GeneFamily	Kinesins\|Pleckstrin homology domain containing	KIF3C KIF3A	7.74e-03	46	52	2	622
Coexpression	BUSSLINGER_GASTRIC_IMMUNE_CELLS	PPIG ZNF652 ASH1L FNBP4 NR4A2 CBX7 KRI1 TNK2 CHD1 BOD1L1 SCAF11 CHD2 CHD3 TRIP12 ADARB1 ZC3H6 MTDH SBNO2	1.12e-06	1492	85	18	M40023
Coexpression	GSE40274_FOXP3_VS_FOXP3_AND_LEF1_TRANSDUCED_ACTIVATED_CD4_TCELL_DN	CAMK2N1 C11orf96 FNBP4 RTN4RL1 NR4A3 NR4A1 DNMT3A	4.05e-06	200	85	7	M9188
Coexpression	NAKAYA_PBMC_FLUARIX_FLUVIRIN_AGE_18_50YO_7DY_DN	SP100 ASH1L NR4A2 NR4A3 CHD1 SCAF11 NR4A1	3.26e-05	276	85	7	M41128
Coexpression	GSE23925_LIGHT_ZONE_VS_NAIVE_BCELL_UP	NR4A2 PER1 NR4A3 NR4A1 SBNO2 TWF1	4.72e-05	199	85	6	M7885
Coexpression	GSE40274_FOXP3_VS_FOXP3_AND_GATA1_TRANSDUCED_ACTIVATED_CD4_TCELL_DN	CAMK2N1 RALGPS1 HELZ2 NR4A3 DNMT3A CBX2	4.72e-05	199	85	6	M9180
Coexpression	GSE40441_NRP1_POS_INDUCED_TREG_VS_NRP1_NEG_NATURAL_TREG_DN	CAMK2N1 RALGPS1 RTN4RL1 NR4A3 NR4A1 DNMT3A	4.72e-05	199	85	6	M9195
Coexpression	GSE411_UNSTIM_VS_100MIN_IL6_STIM_MACROPHAGE_DN	TNRC18 GALNT11 BOD1L1 CHD2 ZC3H6 SBNO2	4.85e-05	200	85	6	M5986
Coexpression	GSE17186_NAIVE_VS_CD21HIGH_TRANSITIONAL_BCELL_CORD_BLOOD_UP	CCDC71 SUSD1 NEIL1 WDR55 SCAF11 SLX4	4.85e-05	200	85	6	M7172
Coexpression	MANNO_MIDBRAIN_NEUROTYPES_HGABA	CAMK2N1 KBTBD6 RALGPS1 CABP4 CASKIN1 NXPH1 TNK2 BOD1L1 CHD3 KIF3C FAM171B SHANK3 KIF3A	5.51e-05	1106	85	13	M39071
Coexpression	NAKAYA_PBMC_FLUMIST_AGE_18_50YO_7DY_DN	SP100 BAZ2A ZNF689 NR4A2 PER1 NR4A3 SCAF11 CHD2 LARP7 ZFX TWF1	8.80e-05	844	85	11	M41129
ToppCell	facs-Mammary_Gland-Mammary_Gland-18m\|Mammary_Gland / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CAMK2N1 C11orf96 NR4A2 PER1 NR4A3 NR4A1 PCMTD1 ZC3H6	2.93e-09	188	85	8	5e13725136114e42d3b59647cf25e0f3c53abb54
ToppCell	mild\|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class	SP100 ASH1L HELZ2 CHD1 BOD1L1 SCAF11 CHD2 TRIP12	4.76e-09	200	85	8	12f1685ce8f218433068e090c9d839cd5a1910bf
ToppCell	COVID-19-COVID-19_Mild\|COVID-19 / Disease, condition lineage and cell class	SP100 FNBP4 HELZ2 NR4A2 PER1 CHD1 BOD1L1 NR4A1	4.76e-09	200	85	8	62c25042086f1afd1102e0720e933c2e476468fd
ToppCell	droplet-Bladder-nan\|Bladder / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PPIG ASH1L NR4A2 CHD1 SCAF11 CHD3 MTDH	7.19e-08	187	85	7	663991a8afe652e92363b64bcbd68c14d0307f0e
ToppCell	Posterior_cortex\|World / BrainAtlas - Mouse McCarroll V32	CAMK2N1 EPOP PER1 NR4A3 NR4A1 NEUROD6	6.15e-07	159	85	6	18e9fe2efbe0bca7c3990f3b12b6f549e2c1263a
ToppCell	droplet-Spleen-nan-18m\|Spleen / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	SP100 ASH1L NR4A2 CHD1 SCAF11 CHD2	1.35e-06	182	85	6	eeb5dfa4539e9ca5220f26bc2b65717ddcf13b6c
ToppCell	droplet-Tongue-nan\|Tongue / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PPIG ASH1L NR4A2 CHD1 SCAF11 CHD2	1.63e-06	188	85	6	d62cc37e86b7b186e53aeb7f421c4e5ee28f23bd
ToppCell	LV-14._Fibroblast_III\|World / Chamber and Cluster_Paper	NR4A2 EVC NR4A3 RSPO4 CHD1 NR4A1	1.69e-06	189	85	6	3922135d1f6fc768d71ba3b465585fead6ea68a8
ToppCell	facs-Mammary_Gland-Mammary_Gland-18m-Epithelial\|Mammary_Gland / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CAMK2N1 NR4A2 PER1 CBX7 NR4A3 NR4A1	1.74e-06	190	85	6	92456f6f7eced6e4c4371f495254a65d061c8d0b
ToppCell	PBMC_fresh-frozen-Mild-Moderate_progression_d12-25\|PBMC_fresh-frozen / Compartment, severity and other cell annotations on 10x 3' data (130k)	BAZ2A NEIL1 FNBP4 PER1 CHD1 CHD2	1.79e-06	191	85	6	1ecd9849d14d5ebf3daf610e83fb50820cafd3ed
ToppCell	COVID-19_Mild\|World / Disease group, lineage and cell class	SP100 HELZ2 PER1 CHD1 BOD1L1 SCAF11	2.14e-06	197	85	6	5c33454b10023decd2f5ccda9229b6512659711e
ToppCell	Brain_organoid-organoid_Kanton_Nature-Organoid-4M-Neuronal\|Organoid-4M / Sample Type, Dataset, Time_group, and Cell type.	CAMK2N1 C11orf96 CHD3 KIF3C NEUROD6 KIF3A	2.27e-06	199	85	6	77b4aa00f14b86ef5db0490be98787e063979541
ToppCell	LPS-antiTNF-Epithelial_alveolar-Mes-Like-AT2\|LPS-antiTNF / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	CCDC71 GAS2L2 FMN1 CASKIN1 RTN4RL1	4.19e-06	125	85	5	5626eb77e542fcc87cd1fdf65f8623f3249ff9db
ToppCell	BAL-Mild-Myeloid-cDC-cDC-cDC_5\|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	EPOP NR4A2 PER1 NR4A3 NR4A1	1.44e-05	161	85	5	78cc5bc488bc47726195a649946d414e6bfabf94
ToppCell	BAL-Mild-Myeloid-cDC-cDC-cDC_5\|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	EPOP NR4A2 PER1 NR4A3 NR4A1	1.48e-05	162	85	5	0fa93efc9c005d1e649b3f7069ae8641d6e41ed8
ToppCell	IIF\|World / Disease, Lineage and Cell Type	FMN1 NR4A2 PER1 CC2D2A NR4A3	1.81e-05	169	85	5	ebf726f725079317ad67c2f754748b4112607277
ToppCell	droplet-Spleen-nan-18m-Lymphocytic\|Spleen / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	SP100 ASH1L CHD1 SCAF11 CHD2	2.66e-05	183	85	5	28cbf909424f3be4491d49832f0aca0386560814
ToppCell	Calu_3-infected\|Calu_3 / Cell line, Condition and Strain	SP100 ASH1L HELZ2 CHD2 TRIP12	2.66e-05	183	85	5	8f7f5000645f24f20a8d7700c4df1f8953a1780b
ToppCell	droplet-Spleen-nan-18m-Lymphocytic-nan\|Spleen / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	SP100 ASH1L CHD1 SCAF11 CHD2	2.66e-05	183	85	5	3fa608aa6b119869ec3280dc388dfee57160e63a
ToppCell	RA-14._Fibroblast_III\|RA / Chamber and Cluster_Paper	NR4A2 NR4A3 RSPO4 CHD1 NR4A1	3.10e-05	189	85	5	46e9a58aacd79db5a02898a8c7244e1884adcfd1
ToppCell	10x3'2.3-week_17-19-Lymphocytic_B-B_lineage-naive_B_cell\|week_17-19 / cell types per 3 fetal stages;per 3',per 5'	SP100 NR4A2 NR4A3 NR4A1 ADARB1	3.26e-05	191	85	5	a073d58154c801ec499fd969f42b7f1ee7f15d79
ToppCell	H1299-infected\|H1299 / Cell line, Condition and Strain	CENPF ASH1L KRI1 BOD1L1 CHD2	3.34e-05	192	85	5	9cf8049bdc3e0f81ce69042beac72b08d8f38b4e
ToppCell	PCW_10-12-Mesenchymal-Mesenchymal_fibroblastic-mes_immature4_(1)\|PCW_10-12 / Celltypes from embryonic and fetal-stage human lung	HELZ2 PER1 NR4A3 CHD1 NR4A1	3.42e-05	193	85	5	dbf0fe496254320c894568c31e5f9ce63707d1b5
ToppCell	COVID-19_Mild\|World / Disease condition and Cell class	SP100 HELZ2 NR4A2 PER1 CHD1	3.42e-05	193	85	5	7256a5a491536c525b31ae96d47ab5c6303cb73a
ToppCell	LV-14._Fibroblast_III\|LV / Chamber and Cluster_Paper	NR4A2 NR4A3 RSPO4 CHD1 NR4A1	3.51e-05	194	85	5	927c26aea0147f7a4b8fb3f192de4de263f1b978
ToppCell	droplet-Pancreas-PANCREAS-30m-Epithelial-pancreatic_B_cell\|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	ASH1L BOD1L1 SCAF11 MGA DNMT3A	3.60e-05	195	85	5	7796ea9247f4c63762f0de8490fed08b9717fa23
ToppCell	3'-Parenchyma_lung-Mesenchymal-Fibroblastic-fibroblastic_type_2\|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	CAMK2N1 C11orf96 RSPO4 GDF10 ADARB1	3.69e-05	196	85	5	9737a5f006d37b549f281e1863aca558e1e4dc99
ToppCell	3'-Parenchyma_lung-Mesenchymal-Fibroblastic-fibroblastic_type_2-Alveolar_fibroblasts\|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	CAMK2N1 C11orf96 RSPO4 GDF10 ADARB1	3.69e-05	196	85	5	cecf82cd5e0a3835d655f5e7478578674a63ce25
ToppCell	B_cells-Naive_B_cells_\|B_cells / Immune cells in Rheumatoid Arthritis Joint Synovial Tissues	NR4A2 PER1 NR4A3 CHD1 NR4A1	3.78e-05	197	85	5	fd5fdc5289d681d59ff22d72e4de6e74c6c7aac6
ToppCell	H1299-infected-SARSCoV2\|infected / Cell line, Condition and Strain	PPIG KRI1 BOD1L1 CHD2 LARP7	3.78e-05	197	85	5	0fa3e4cf93e77d78b1f97b906c5b13ca741ae17e
ToppCell	PBMC-Mild\|PBMC / Location, Disease Group, Cell group, Cell class (2021.03.09)	SP100 HELZ2 PER1 CHD1 BOD1L1	3.87e-05	198	85	5	44417089b62056269cac38d3134ff209c05b7007
ToppCell	LPS_only-Hematopoietic_Myeloid-Dendritic_cells-pDC\|LPS_only / Treatment groups by lineage, cell group, cell type	SUSD1 NR4A2 NR4A3 NR4A1 SLX4	3.87e-05	198	85	5	d205dfcfe1f20e1e21bf84759e723d9e6e610a5c
ToppCell	(11)_FOXN4+-(2)_GFP_FOXI1\|(11)_FOXN4+ / shred by cell type by condition	PPIG CENPF CHD1 BOD1L1 SCAF11	3.87e-05	198	85	5	76d40b8c2f8399725b3a62ee2ae0896559cf91eb
ToppCell	PBMC-Mild\|PBMC / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	SP100 HELZ2 PER1 CHD1 BOD1L1	3.87e-05	198	85	5	28ef3fc4c17dcb765537b75917f7db78baa522db
ToppCell	10x_5'_v1-Non-neoplastic-Lymphoid-CD4/CD8-CD4_INF-Z\|10x_5'_v1 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	SP100 C11orf96 HELZ2 NR4A2 RTN4RL1	3.96e-05	199	85	5	d3f36ede2fade550ec8f21a0448e71e1ff579ee2
ToppCell	(09)_Interm._secr.>cil.-(2)_GFP_FOXI1\|(09)_Interm._secr.>cil. / shred by cell type by condition	PPIG BOD1L1 SCAF11 TRIP12 LARP7	3.96e-05	199	85	5	fc680f85ebd3bab4c72876a19a461b0afb5f51ce
ToppCell	lymphoid-NK_cell-NK_cell\|NK_cell / Lineage, cell class and subclass	BAZ2A FNBP4 NR4A2 PER1 CHD1	3.96e-05	199	85	5	945fbf5845403a8b22d04963f50ad69c414b6153
ToppCell	myeloid-Dendritic_cell-Conventional_dendritic_cell\|myeloid / Lineage, cell class and subclass	NR4A2 NR4A3 NR4A1 MTDH ATP5F1A	3.96e-05	199	85	5	1e7ce1a1d6a7af18351d64b7a5334efa6dd9abc5
ToppCell	myeloid-Dendritic_cell\|myeloid / Lineage, cell class and subclass	NR4A2 NR4A3 NR4A1 MTDH ATP5F1A	3.96e-05	199	85	5	b81c0a40481f1006ac4aa8759af95448cb5fc2e6
ToppCell	Parenchymal-10x3prime_v2-Stromal-Fibroblastic-Fibro_alveolar\|10x3prime_v2 / Cell types per location group and 10X technology with lineage, and cell group designations	CAMK2N1 C11orf96 RSPO4 GDF10 ADARB1	4.06e-05	200	85	5	750ff51c9de08aecec230f4a402e0bf5a789f24c
ToppCell	Tracheal-10x3prime_v2-Stromal-Peri/Epineurial_\|10x3prime_v2 / Cell types per location group and 10X technology with lineage, and cell group designations	TMEM245 CBX7 NR4A1 FAM171B DNMT3A	4.06e-05	200	85	5	f7c3a8f5ac156c05ad7335d6d142c154c7d86449
ToppCell	MS-IIF\|MS / Disease, condition lineage and cell class	FMN1 NR4A2 PER1 CC2D2A NR4A3	4.06e-05	200	85	5	221f59edcfc18baece13184c2552d26022228146
ToppCell	Brain_organoid-organoid_Tanaka_cellReport-2m-Neuronal-Intermediate\|2m / Sample Type, Dataset, Time_group, and Cell type.	CAMK2N1 NR4A2 CHD3 NEUROD6 KIF3A	4.06e-05	200	85	5	2a635694844ddabcd98462c5636a6f41a3f08a46
ToppCell	10x_3'_v3-blood_(10x_3'_v3)-myeloid-myeloid_monocytic-non-classical_monocyte\|blood_(10x_3'_v3) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type	ZNF469 WDR55 NR4A1 CBX2	5.47e-05	108	85	4	695ed3f8cf637d767a6d79b0309d5ee82dfd063f
ToppCell	primary_visual_cortex-Neuronal-glutamatergic_neuron-L2/3_IT-L2/3_IT_VISp_Rrad\|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	CENPF NR4A2 NR4A3 NR4A1	1.42e-04	138	85	4	b3a040c5d0e1cc94d9b19155bca8700edba2d243
ToppCell	(08)_Brush+PNEC-(2)_GFP_FOXI1\|(08)_Brush+PNEC / shred by cell type by condition	PPIG ASH1L BOD1L1 TRIP12	1.42e-04	138	85	4	817e3f639604ea95adae01e8685ffaa2e0aff7a8
ToppCell	PBMC-Severe-Myeloid-cDC-cDC-cDC_8\|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	C11orf96 EVC NR4A3 NR4A1	1.54e-04	141	85	4	737237db115721524c44ea4c55aed000e1b00ee5
ToppCell	PBMC-Severe-Myeloid-cDC-cDC-cDC_8\|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	C11orf96 EVC NR4A3 NR4A1	1.54e-04	141	85	4	c14f84bc3921cafbce6fa7f7163ecf3cd9cdf073
ToppCell	Substantia_nigra-Neuronal-Excitatory-eN2(Slc17a7_Slc17a6)-Slc17a6-Excitatory_Neuron.Slc17a6.C1ql2_(red_nucleus,_magnocellular/parvicellular_(RMC/RPC))\|Substantia_nigra / BrainAtlas - Mouse McCarroll V32	SOST USH1G TAF7L	1.59e-04	55	85	3	0e90e59184916d1c51b62c9b97498365173cb271
ToppCell	Substantia_nigra-Neuronal-Excitatory-eN2(Slc17a7_Slc17a6)-Slc17a6-Excitatory_Neuron.Slc17a6.C1ql2_(red_nucleus,_magnocellular/parvicellular_(RMC/RPC))-\|Substantia_nigra / BrainAtlas - Mouse McCarroll V32	SOST USH1G TAF7L	1.59e-04	55	85	3	9ea9e69d0f6cc4317df3538ee030a703e62c644f
ToppCell	343B-Myeloid-Macrophage-SPP1+_Macrophage_4\|Macrophage / Donor, Lineage, Cell class and subclass (all cells)	NR4A2 NR4A3 C1orf167 NR4A1	1.62e-04	143	85	4	091708a47ac55c6585923ee30190ff296fa87f6f
ToppCell	primary_visual_cortex-Neuronal-glutamatergic_neuron-NP-L5_NP_VISp_Trhr_Met\|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	DNAH3 NXPH1 NR4A3 NEUROD6	1.71e-04	145	85	4	8abbc781f5f69f039617c29a5589d7b6950c2c40
ToppCell	TCGA-Bladder-Solid_Tissue_Normal-Urothelial_normal_tissue-Urothelial_normal_tissue-4\|TCGA-Bladder / Sample_Type by Project: Shred V9	C11orf96 NR4A2 NR4A3 NR4A1	1.95e-04	150	85	4	bcb99c6fa81052556ab30f9db5875fccf1ae724b
ToppCell	primary_visual_cortex-Neuronal-glutamatergic_neuron-NP\|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	DNAH3 NXPH1 NR4A3 NEUROD6	2.05e-04	152	85	4	b6a7453fbf9f898e4f222b215907c9a110baa2f6
ToppCell	3'-Parenchyma_lung-Immune_Myeloid-Myeloid_monocytic-non-classical_monocyte-Non-classical_monocytes-Non-classical_monocytes_L.1.2.2.2\|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	TAF7L NR4A2 CHD1 CHD2	2.21e-04	155	85	4	77ae0b8d30bc3db4a73fd5340f99691a73d2684f
ToppCell	Entopeduncular-Endothelial-MURAL-M1(Rgs5Acta2)-M1_1-MURAL_Mural.Rgs5Acta2.Junb_(Mural,_IEG+)\|Entopeduncular / BrainAtlas - Mouse McCarroll V32	NR4A2 NR4A3 NR4A1 SBNO2	2.26e-04	156	85	4	029ba0832ee9c4a2c85620e4df2260e02d86b45c
ToppCell	10x_3'_v2v3-Non-neoplastic-Myeloid-DC-cDC2-B\|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	TAF7L NR4A2 NR4A3 NR4A1	2.26e-04	156	85	4	0f54d62c0fc08bbdd5ac743b2d5d748c3d1e6ef9
ToppCell	Entopeduncular-Endothelial-MURAL-M1(Rgs5Acta2)-M1_1-MURAL_Mural.Rgs5Acta2.Junb_(Mural,_IEG+)-\|Entopeduncular / BrainAtlas - Mouse McCarroll V32	NR4A2 NR4A3 NR4A1 SBNO2	2.26e-04	156	85	4	5df19a235843829f5a1a90ca21b0964ef8b4e115
ToppCell	PND03-Immune-Immune_Myeloid-DC-cDC1-cDC1_prolif\|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	ZNF689 NR4A2 EVC RTN4RL1	2.26e-04	156	85	4	af47a4b17342bdb3cb62d7e2d52a81168e588629
ToppCell	frontal_cortex-Neuronal-glutamatergic_neuron-L5_IT-L5_IT_ALM_Pld5\|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	CAMK2N1 EPOP RTN4RL1 NEUROD6	2.43e-04	159	85	4	a082e770fa757c4a1d3ed13d53f83297e36faf05
ToppCell	TCGA-Bladder-Solid_Tissue_Normal-Urothelial_normal_tissue-Urothelial_normal_tissue\|TCGA-Bladder / Sample_Type by Project: Shred V9	CBX7 NR4A3 NR4A1 GDF10	2.49e-04	160	85	4	8a41e2c96e0e170ac35daf6c403bf961b8d7c30b
ToppCell	TCGA-Bladder-Solid_Tissue_Normal\|TCGA-Bladder / Sample_Type by Project: Shred V9	CBX7 NR4A3 NR4A1 GDF10	2.49e-04	160	85	4	d6678996e12eaf2b735f1dfae32418cb2fabf268
ToppCell	PBMC-Severe-cDC_4\|Severe / Compartment, Disease Groups and Clusters	POMGNT2 DNAJC14 CABP4 FAM171B	2.49e-04	160	85	4	4dac64e58d9366c399f3d830848ccb720d400be7
ToppCell	TCGA-Bladder-Solid_Tissue_Normal-Urothelial_normal_tissue\|TCGA-Bladder / Sample_Type by Project: Shred V9	CBX7 NR4A3 NR4A1 GDF10	2.49e-04	160	85	4	c8dc575562b463fd30832d322c28006f18f7ab9c
ToppCell	primary_visual_cortex-Neuronal-glutamatergic_neuron-L4\|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	SLC9A5 CAMK2N1 NR4A1 NEUROD6	2.68e-04	163	85	4	1e8ab00ecc2d2ba35aa6745c0ed38663e26312e8
ToppCell	primary_visual_cortex-Neuronal-glutamatergic_neuron-L4-L4_IT_VISp_Rspo1\|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype	SLC9A5 CAMK2N1 NR4A1 NEUROD6	2.68e-04	163	85	4	431221a41d396b09170476179590eaf8a55266d8
ToppCell	wk_08-11-Mesenchymal-Myofibro_&_SMC-Late_airway_SMC\|wk_08-11 / Celltypes from embryonic and fetal-stage human lung	EPOP NR4A2 NR4A3 NR4A1	2.68e-04	163	85	4	1e8730d75cccf7292010683ab4e81a69d8e3bfa9
ToppCell	3'-Pediatric_IBD-SmallIntestine-Hematopoietic-Plasma_cells-IgM_plasma_cell\|Pediatric_IBD / Celltypes from developing, pediatric, Crohn's, & adult GI tract	ZNF469 MTDH ZNF687 CBX2	2.80e-04	165	85	4	6e8370b8e747d8ef44a2413a993291a3cd83a77c
ToppCell	PND01-Immune-Immune_Lymphocytic_T/NK-Lymphocytic_B-B-B_prolif\|PND01 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	SP100 SUSD1 ZNF689 FAM171B	2.80e-04	165	85	4	66f0364098d82629aa2ec1dfe0c5ad23de7c2c12
ToppCell	BAL-Severe-cDC_5\|Severe / Compartment, Disease Groups and Clusters	NR4A2 PER1 NR4A3 NR4A1	3.00e-04	168	85	4	857a80c217a5513553460798a625612031bc7bb7
ToppCell	COVID-19-Myeloid-MoAM5,_CCL3L1\|Myeloid / Condition, Lineage and Cell class	C11orf96 NR4A2 NR4A3 NR4A1	3.00e-04	168	85	4	ea465152ea31391b63c02425beafa9a4f51f6703
ToppCell	-Donor_05\|World / lung cells shred on cell class, cell subclass, sample id	CAMK2N1 RSPO4 GDF10 ADARB1	3.07e-04	169	85	4	8ebe9a88111c53a09c25a7b6a164a0a17880458d
ToppCell	10x_3'_v2v3-Non-neoplastic-Myeloid-TAM-MG-TAM-MG_pro-infl_II-B\|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	FMN1 PER1 BOD1L1 NR4A1	3.07e-04	169	85	4	0867528101767fc65e93b3561480bf830c50368d
ToppCell	E18.5-Mesenchymal-Mesenchymal_myocytic-Myofibroblast_vascular-VSMC-VSMC_G2M\|E18.5 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	SOST CENPF CC2D2A RTN4RL1	3.43e-04	174	85	4	41eb0a214a8b4015a26311f77061c8147144f0e7
ToppCell	10x5'-blood-Lymphocytic_T_CD4-Tfh\|blood / Manually curated celltypes from each tissue	ZNF384 GALNT11 GPATCH1 ZNF324B	3.50e-04	175	85	4	d7e24ac683ff36f7ce3d1151353d3d4a6f2b63bf
ToppCell	10x_3'_v2v3-Non-neoplastic-Myeloid-DC-cDC2-E\|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	NR4A2 PER1 NR4A3 NR4A1	3.58e-04	176	85	4	a31d7532f8c055d4e62bbaa78d819f2495bfee00
ToppCell	systemic_lupus_erythematosus-managed\|systemic_lupus_erythematosus / PBMC cell types (v2) per disease, treatment status, and sex	NR4A2 PER1 NR4A3 NR4A1	3.58e-04	176	85	4	e406a05345461d23cba21c5444223c937143e96a
ToppCell	BAL-Control-Myeloid-cDC-cDC-cDC_6\|Control / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	NR4A2 NR4A3 NR4A1 FAM171B	3.66e-04	177	85	4	3a150dcaefa342d49968b42c7cdb1fbb633adcd0
ToppCell	BAL-Control-Myeloid-cDC-cDC-cDC_6\|Control / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	NR4A2 NR4A3 NR4A1 FAM171B	3.66e-04	177	85	4	c9e5820ff0bc7ad1adcfb2651713fdfc58bced56
ToppCell	droplet-Limb_Muscle-MUSCLE-30m\|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	SP100 ASH1L CHD1 SCAF11	3.74e-04	178	85	4	01dafd19de04eff459253eaa9a35debf8f3deedf
ToppCell	facs-Lung-3m-Hematologic-myeloid-myeloid_dendritic_cell-dendritic_cell\|3m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	DNAJC14 CECR2 CC2D2A TNK2	3.74e-04	178	85	4	89f0537459a321ded956bf70ad56fefc0854f8b0
ToppCell	BAL-Control-Myeloid-cDC-cDC-cDC_7\|Control / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)	NR4A2 NR4A3 NR4A1 SLX4	3.82e-04	179	85	4	42f3c040f504a91cc69292d39d22b5715c12526f
ToppCell	BAL-Control-Myeloid-cDC-cDC-cDC_7\|Control / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	NR4A2 NR4A3 NR4A1 SLX4	3.82e-04	179	85	4	063c05753ef1b4a18bc1ebbcae62c8cd25d11070
ToppCell	TCGA-Adrenal-Primary_Tumor-Pheochromocytoma-Pheochromocytoma-1\|TCGA-Adrenal / Sample_Type by Project: Shred V9	SUSD1 NEXMIF RSPO4 FAM171B	3.82e-04	179	85	4	431e1b29015ec817f778499106d24b19cfc825ae
ToppCell	Smart-start-Cell-Wel_seq-Non-neoplastic-Myeloid-TAM-MG-TAM-MG_pro-infl_I-A\|Smart-start-Cell-Wel_seq / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group	NR4A2 PER1 NR4A3 NR4A1	3.82e-04	179	85	4	3d3716078afdb9a89ddfadb3197cd1b52fa770be
ToppCell	ASK454-Endothelial-Lymphatic\|ASK454 / Donor, Lineage and Cell class of Lung cells from Dropseq	DNAH3 CAMK2N1 RTN4RL1 FAM171B	3.82e-04	179	85	4	fd84a79f76a01c0377dff5b20016b004d369f96f
ToppCell	facs-Lung-EPCAM-3m-Myeloid-Dendritic_Cell\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	DNAJC14 CECR2 CC2D2A TNK2	3.90e-04	180	85	4	710526abedc8e0f9ba19ad69220df4c9468ada8f
ToppCell	droplet-Kidney-nan-18m-Epithelial-Stroma____kidney_mesangial_cell\|Kidney / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	C11orf96 NR4A2 FAM171B GDF10	3.90e-04	180	85	4	b6f44fdedc33b7d93b0074e8e9c8cc32009d4c4d
ToppCell	3'-GW_trimst-2-SmallIntestine-Endothelial-lymphatic_endothelial-LEC2_(MADCAM1+)\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	RTN4RL1 C1orf167 GDF10 SHANK3	4.06e-04	182	85	4	f231e86524b628e6e11ac33d5c34be99d454a92a
ToppCell	Monocytes-IL1B+_Monocytes\|Monocytes / Immune cells in Rheumatoid Arthritis Joint Synovial Tissues	NR4A2 NR4A3 CHD3 NR4A1	4.32e-04	185	85	4	cbe54b605f417a01b3b5d2ec75565ee3b5a9ba06
ToppCell	facs-Mammary_Gland-Mammary_Gland-21m\|Mammary_Gland / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	NR4A2 PER1 NR4A3 NR4A1	4.41e-04	186	85	4	bd1185592aedebccd1007dbf2dd2f549fcdf9f42
ToppCell	PBMC-Mild-cDC_5\|Mild / Compartment, Disease Groups and Clusters	NR4A2 PER1 NR4A3 NR4A1	4.50e-04	187	85	4	0afef5baf3752314dbfb024790347d5e51f9b84b
ToppCell	droplet-Kidney-nan-18m-Epithelial-kidney_mesangial_cell\|Kidney / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	SOST C11orf96 NR4A2 GDF10	4.59e-04	188	85	4	d1a4cd4db95d8d32b79156290f7867f32824cc87
ToppCell	Smart-seq2-spleen_(Smart-seq2)\|Smart-seq2 / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type	WDR74 NR4A2 CHD1 NR4A1	4.68e-04	189	85	4	b0244a9d1b5c8ad4708750b691184f3491b13900
ToppCell	RA-14._Fibroblast_III\|World / Chamber and Cluster_Paper	NR4A2 NR4A3 CHD1 NR4A1	4.68e-04	189	85	4	b6e12d24d2b0735730bdc625f8318c1c9c2a9b3b
ToppCell	renal_cortex_nuclei-Adult_normal_reference\|renal_cortex_nuclei / Celltypes from Cells and Nuclei per compartment and clinical group	TMEM245 PER1 BOD1L1 NR4A1	4.68e-04	189	85	4	a48df46274d51e84ffb40264646de7346104efb9
ToppCell	ILEUM\|World / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)	NR4A2 PER1 NR4A3 NR4A1	4.78e-04	190	85	4	4395dbd18c14d491f5066a2ddac438a16b1fd7c3
ToppCell	PBMC-Control-cDC_6\|Control / Compartment, Disease Groups and Clusters	NR4A2 NR4A3 CHD1 ATP5F1A	4.97e-04	192	85	4	41a7201febb7d88a39e4ee64df04cce18c691df8
ToppCell	COPD-Stromal-Myofibroblast\|Stromal / Disease state, Lineage and Cell class	CAMK2N1 CECR2 GDF10 ADARB1	4.97e-04	192	85	4	62904f94dfce430456f05066522cbf9bd29f4d7e
ToppCell	LA-14._Fibroblast_III\|LA / Chamber and Cluster_Paper	NR4A2 NR4A3 CHD1 NR4A1	5.07e-04	193	85	4	7426c291bac59e539c427bcaae18abc7d397d44e
Disease	autism spectrum disorder (implicated_via_orthology)	NEXMIF ASH1L CHD1 CHD2 SHANK3	6.35e-05	152	81	5	DOID:0060041 (implicated_via_orthology)
Disease	Autism Spectrum Disorders	CHD2 TRIP12 SHANK3 DNMT3A	9.01e-05	85	81	4	C1510586
Disease	Neurodevelopmental Disorders	NEXMIF ASH1L CHD2 TRIP12	1.28e-04	93	81	4	C1535926
Disease	Bell's palsy	CXorf51A CC2D2A CXorf51B MGA	1.83e-04	102	81	4	EFO_0007167
Disease	Intellectual Disability	PRR12 ASH1L NR4A2 CHD3 SHANK3 LARP7 DNMT3A	2.31e-04	447	81	7	C3714756
Disease	Polydactyly	CENPF CC2D2A EVC KIF3A	3.09e-04	117	81	4	C0152427
Disease	Insulin Sensitivity	NEIL1 NR4A3 NR4A1	6.09e-04	60	81	3	C0920563
Disease	Insulin Resistance	NEIL1 NR4A3 NR4A1	6.09e-04	60	81	3	C0021655
Disease	thyroid gland papillary carcinoma (is_marker_for)	CAMK2N1 CBX7	6.63e-04	14	81	2	DOID:3969 (is_marker_for)
Disease	Abnormal behavior	PRR12 NR4A2	8.71e-04	16	81	2	C0233514
Disease	thyroxine measurement	CXorf51A FNBP4 CXorf51B	1.56e-03	83	81	3	EFO_0005130
Disease	mean reticulocyte volume	ZNF469 NEXMIF ZNF652 CABP4 HELZ2 CC2D2A CHD1 SBNO2	1.57e-03	799	81	8	EFO_0010701
Disease	Seckel syndrome	CENPF DNMT3A	1.66e-03	22	81	2	C0265202
Disease	Dwarfism	LARP7 DNMT3A	2.14e-03	25	81	2	C0013336
Disease	Acute monocytic leukemia	SLX4 DNMT3A	2.32e-03	26	81	2	C0023465
Disease	Sezary Syndrome	CHD3 DNMT3A	2.50e-03	27	81	2	C0036920

Protein segments in the cluster

Peptide	Gene	Start	Entry
VPLGPRKKILGAVRR	USH1G	431	Q495M9
LPKPGKRLKQRRFRR	C1orf167	206	Q5SNV9
LSVSPFPKKRGRPKR	ASH1L	881	Q9NR48
AGKPKKARGPILRGR	CXorf51A	71	A0A1B0GTR3
AGKPKKARGPILRGR	CXorf51B	71	P0DPH9
RKVGRPGRKRKHPPV	DNMT3A	46	Q9Y6K1
RGRGRPPKVKITELL	BAZ2A	671	Q9UIF9
GKRPKKRGRPRTIPR	CHD1	1106	O14646
KTGKRRGRPPKRKKL	CECR2	196	Q9BXF3
KGPIGSKTRRRVGLK	ATP5F1A	161	P25705
DFKRLGLRKPGLPRG	TNK2	531	Q07912
ARPKRKGKCARRTPI	RTN4RL1	396	Q86UN2
GPLRRKTLLKEGRKP	RALGPS1	436	Q5JS13
ALPQKRTKRKGRGGR	FMN1	171	Q68DA7
SLKGRRGRLPSKPKQ	NR4A1	341	P22736
RLLQRPRPGKAKLLG	CASKIN1	21	Q8WXD9
GEAKPKRRKKVRRPF	DNAJC14	686	Q6Y2X3
APTVPKKGRRKGRQA	NEIL1	351	Q96FI4
PGKRGRPRKLKLCKA	MGA	611	Q8IWI9
RPRKLKLCKAGRPPK	MGA	616	Q8IWI9
LKPRPGRKDRRKKGQ	GDF10	331	P55107
KRGMLGKRPRRKSSR	KIF3C	396	O14782
KRRPRRQKPDPGVKI	GPATCH1	176	Q9BRR8
KLRLPPERRGKGRSG	PER1	146	O15534
KGIPQRAPPKRKRKR	PCMTD1	266	Q96MG8
NRGPKRPKVLQRGRL	GALNT11	471	Q8NCW6
GTRIRRKKPLGERPK	LARP7	106	Q4G0J3
PQKRRRAKKARLLGP	KRI1	646	Q8N9T8
IRRVVKGRPGPRKQK	POMGNT2	461	Q8NAT1
KARPKTGRRKRSAKP	KIF3A	676	Q9Y496
RLKKRRKTPGPVLPK	ADARB1	66	P78563
RKIKGRGPRRYRTPS	PPIG	331	Q13427
DQPIIIKRKRGRPRK	BOD1L1	2866	Q8NFC6
AKDLPPKKRTRLGPR	CCDC71	396	Q8IV32
KRGKRPRGRPRKLTA	CBX2	71	Q14781
LKDPIRKKRGRKPLP	CBX2	156	Q14781
EQKRPLRPRRKGRKK	CC2D2A	1016	Q9P2K1
PLTRKRSKKERGLRG	CABP4	36	P57796
EGLRVKRGRLVPSPK	CENPF	3086	P49454
DRRRKGLFGPPIGKK	DNAH3	2121	Q8TD57
DKKPKRRGRPRSVRK	CHD2	1111	O14647
PAKGPARGAAKKRRL	EPOP	276	A6NHQ4
RSKSPRVPDGRKKLR	CHD3	271	Q12873
PVRTKKLKRGRPGRK	CHD3	341	Q12873
SKGRRTLRKPKRVPS	GAS2L2	756	Q8NHY3
ASGYRKRGPKPKRLL	CBX7	66	O95931
AGARKKRRSPPRKRE	MTDH	76	Q86UE4
PAKRGLLEKPLRTKR	EVC	921	P57679
VPRVGSRKLLRKSPR	HELZ2	2256	Q9BYK8
GRPKPLARKLRPAQK	CA5BP1	71	Q8WTZ4
APKRKSVRRGRKPPL	SCAF11	371	Q99590
SVRRGRKPPLLKKKL	SCAF11	376	Q99590
TKRRGRPPLAKRDSK	FAM171B	796	Q6P995
RRLASPRGGKRPKKI	KBTBD6	11	Q86V97
DSLKGRRGRLPSKPK	NR4A2	336	P43354
SLKGRRGRLPSKPKS	NR4A3	366	Q92570
GITPPLKNVRKKRFR	TAF7L	221	Q5H9L4
SPGQKKGRKDRRPRK	RSPO4	201	Q2I0M5
MGKKSRAVPGRRPIL	FNBP4	1	Q8N3X1
RPRAKRRPIVKTGKF	NXPH1	101	P58417
FLPPARKRKSKLGNR	NEXMIF	621	Q5QGS0
KPRPRKTGRRKKDGV	SLC9A5	661	Q14940
KRKRRPRGRGAKAPR	SBNO2	626	Q9Y2G9
KVRLIRGGSLPPVKR	MTA1	631	Q13330
GPRRRGRKPTKAKRD	PRR12	1151	Q9ULL5
KGRKPRPRARSAKAN	SOST	191	Q9BQB4
LKRRGPTSKKEPRKR	SLX4	396	Q8IY92
VRPAKLPKGRGRLRR	C11orf96	346	Q7Z7L8
NKRPPKLGQIGRSKR	CAMK2N1	41	Q7Z7J9
VRKRSPAGLLRPKKG	TNRC18	1921	O15417
PQGALQTRRRKKKRP	WDR74	366	Q6RFH5
PRGRKKKRMLESGLP	ZNF384	191	Q8TF68
GRGRGLPKKIKRKER	ZC3H6	216	P61129
RPKGLEGKRPARLTR	RPS10P5	116	Q9NQ39
RGPKRKLYSAVPGRK	SHANK3	461	Q9BYB0
AGPPTRKKSRRERKR	SCAF1	511	Q9H7N4
LPRLRLRKAKEKNGP	SUSD1	601	Q6UWL2
KANTRPLKRRRKRGP	SP100	576	P23497
PLKRRRKRGPRIPKD	SP100	581	P23497
PPRKDPRKRKARGGA	ZNF469	1031	Q96JG9
RRSVGGPQKTLKRPK	nan	196	Q8N9P0
GRRRPEIGTFLRKKK	TMEM245	336	Q9H330
PRKGKRGRRPSKPRL	ZNF689	126	Q96CS4
RRRKKKGGPLRALSS	WDR55	336	Q9H6Y2
GRLAKQKPKKRRRPD	ZFX	391	P17010
AKRPRRELGSKGLKG	ZNF687	941	Q8N1G0
LKASLPRKRGRPPKS	ZNF524	46	Q96C55
RGRRKSVEPPKRKKR	ZNF652	211	Q9Y2D9
LSDVLKRKRLPKRGP	TRIP12	996	Q14669
KRKRLPKRGPRRPKY	TRIP12	1001	Q14669
PKGPAGKRGIRRLIR	TWF1	326	Q12792
HRKVRRGGKPSPVLK	ZNF324B	526	Q6AW86
NGLPRRRGLRKKKTT	NEUROD6	71	Q96NK8