Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyMolecularFunction	phosphatidylcholine flippase activity	ABCA3 ATP10A	1.07e-04	6	54	2	GO:0140345
GeneOntologyMolecularFunction	intramembrane lipid transporter activity	ABCA3 ATG9A ATP10A	3.55e-04	51	54	3	GO:0140303
GeneOntologyMolecularFunction	E-box binding	TCF21 PRMT5 HAND2	6.02e-04	61	54	3	GO:0070888
GeneOntologyMolecularFunction	glycerophospholipid flippase activity	ABCA3 ATP10A	6.40e-04	14	54	2	GO:0140333
GeneOntologyMolecularFunction	flippase activity	ABCA3 ATP10A	9.51e-04	17	54	2	GO:0140327
GeneOntologyMolecularFunction	phospholipid transporter activity	ABCA3 ATG9A ATP10A	1.06e-03	74	54	3	GO:0005548
GeneOntologyMolecularFunction	phosphatidylcholine transporter activity	ABCA3 ATP10A	1.32e-03	20	54	2	GO:0008525
GeneOntologyMolecularFunction	semaphorin receptor binding	SEMA3F SEMA3B	1.75e-03	23	54	2	GO:0030215
GeneOntologyMolecularFunction	ATPase-coupled intramembrane lipid transporter activity	ABCA3 ATP10A	2.59e-03	28	54	2	GO:0140326
GeneOntologyMolecularFunction	chemorepellent activity	SEMA3F SEMA3B	2.78e-03	29	54	2	GO:0045499
Domain	ig	SEMA3F CNTN4 PVR SEMA3B FGFR4	2.18e-04	190	54	5	PF00047
Domain	Immunoglobulin	SEMA3F CNTN4 PVR SEMA3B FGFR4	2.18e-04	190	54	5	IPR013151
Domain	-	SEMA3F CNTN4 PTPRG PVR SEMA3B EGFLAM FGFR4 USH2A	5.94e-04	663	54	8	2.60.40.10
Domain	PDZ	RHPN1 PTPN3 SHROOM3 FRMPD2	7.35e-04	141	54	4	PF00595
Domain	PDZ	RHPN1 PTPN3 SHROOM3 FRMPD2	8.80e-04	148	54	4	SM00228
Domain	Ig-like_fold	SEMA3F CNTN4 PTPRG PVR SEMA3B EGFLAM FGFR4 USH2A	8.95e-04	706	54	8	IPR013783
Domain	-	RHPN1 PTPN3 SHROOM3 FRMPD2	9.25e-04	150	54	4	2.30.42.10
Domain	PDZ	RHPN1 PTPN3 SHROOM3 FRMPD2	9.48e-04	151	54	4	PS50106
Domain	Laminin_N	NTNG1 USH2A	9.59e-04	16	54	2	IPR008211
Domain	LAMININ_NTER	NTNG1 USH2A	9.59e-04	16	54	2	PS51117
Domain	Laminin_N	NTNG1 USH2A	9.59e-04	16	54	2	PF00055
Domain	LamNT	NTNG1 USH2A	9.59e-04	16	54	2	SM00136
Domain	PDZ	RHPN1 PTPN3 SHROOM3 FRMPD2	9.72e-04	152	54	4	IPR001478
Domain	fn3	CNTN4 PTPRG EGFLAM USH2A	1.23e-03	162	54	4	PF00041
Domain	PUA-like_domain	PAPSS2 TRIP4	1.36e-03	19	54	2	IPR015947
Domain	Semaphorin	SEMA3F SEMA3B	1.51e-03	20	54	2	IPR027231
Domain	FN3	CNTN4 PTPRG EGFLAM USH2A	2.00e-03	185	54	4	SM00060
Domain	FERM_C	PTPN3 FRMPD2	2.55e-03	26	54	2	PF09380
Domain	FN3	CNTN4 PTPRG EGFLAM USH2A	2.61e-03	199	54	4	PS50853
Domain	FERM_C	PTPN3 FRMPD2	2.75e-03	27	54	2	SM01196
Domain	FERM_PH-like_C	PTPN3 FRMPD2	2.75e-03	27	54	2	IPR018980
Domain	FN3_dom	CNTN4 PTPRG EGFLAM USH2A	3.11e-03	209	54	4	IPR003961
Domain	EGF_LAM_2	NTNG1 USH2A	3.39e-03	30	54	2	PS50027
Domain	EGF_LAM_1	NTNG1 USH2A	3.39e-03	30	54	2	PS01248
Domain	Sema	SEMA3F SEMA3B	3.62e-03	31	54	2	SM00630
Domain	Semap_dom	SEMA3F SEMA3B	3.62e-03	31	54	2	IPR001627
Domain	Sema	SEMA3F SEMA3B	3.62e-03	31	54	2	PF01403
Domain	SEMA	SEMA3F SEMA3B	3.62e-03	31	54	2	PS51004
Domain	FERM_N	PTPN3 FRMPD2	4.09e-03	33	54	2	PF09379
Domain	FERM_N	PTPN3 FRMPD2	4.09e-03	33	54	2	IPR018979
Domain	Laminin_EGF	NTNG1 USH2A	4.59e-03	35	54	2	PF00053
Domain	EGF_Lam	NTNG1 USH2A	4.59e-03	35	54	2	SM00180
Domain	PTPc	PTPN3 PTPRG	4.85e-03	36	54	2	SM00194
Domain	LAM_G_DOMAIN	EGFLAM USH2A	5.40e-03	38	54	2	PS50025
Domain	Laminin_EGF	NTNG1 USH2A	5.40e-03	38	54	2	IPR002049
Domain	TYR_PHOSPHATASE_PTP	PTPN3 PTPRG	5.68e-03	39	54	2	PS50055
Domain	Laminin_G_2	EGFLAM USH2A	5.97e-03	40	54	2	PF02210
Domain	PTPase_domain	PTPN3 PTPRG	6.26e-03	41	54	2	IPR000242
Domain	Y_phosphatase	PTPN3 PTPRG	6.26e-03	41	54	2	PF00102
Domain	EGF_1	NTNG1 EGFLAM USH2A MUC4	6.29e-03	255	54	4	PS00022
Domain	PSI	SEMA3F SEMA3B	7.18e-03	44	54	2	IPR016201
Domain	LamG	EGFLAM USH2A	7.18e-03	44	54	2	SM00282
Domain	IG	SEMA3F CNTN4 PVR SEMA3B FGFR4	7.26e-03	421	54	5	SM00409
Domain	Ig_sub	SEMA3F CNTN4 PVR SEMA3B FGFR4	7.26e-03	421	54	5	IPR003599
Domain	PSI	SEMA3F SEMA3B	7.83e-03	46	54	2	SM00423
Domain	FERM_M	PTPN3 FRMPD2	7.83e-03	46	54	2	PF00373
Pubmed	An extracellular biochemical screen reveals that FLRTs and Unc5s mediate neuronal subtype recognition in the retina.	SEMA3F CNTN4 SEMA3B NTNG1	1.43e-06	52	55	4	26633812
Pubmed	Semaphorin 3B and 3F single nucleotide polymorphisms are associated with prostate cancer risk and poor prognosis.	SEMA3F SEMA3B	2.46e-06	2	55	2	19683737
Pubmed	Human semaphorins A(V) and IV reside in the 3p21.3 small cell lung cancer deletion region and demonstrate distinct expression patterns.	SEMA3F SEMA3B	2.46e-06	2	55	2	8633026
Pubmed	Hormonal regulation and distinct functions of semaphorin-3B and semaphorin-3F in ovarian cancer.	SEMA3F SEMA3B	2.46e-06	2	55	2	20124444
Pubmed	IL-4 Induces Metallothionein 3- and SLC30A4-Dependent Increase in Intracellular Zn(2+) that Promotes Pathogen Persistence in Macrophages.	CCR2 IRF4	7.36e-06	3	55	2	27653687
Pubmed	Fgfr2 is required for the expansion of the early adrenocortical primordium.	TCF21 SF1 HAND2	7.40e-06	24	55	3	26141512
Pubmed	Cullin-3/KCTD10 complex is essential for K27-polyubiquitination of EIF3D in human hepatocellular carcinoma HepG2 cells.	PVR PAPSS2 UTRN SF1	1.29e-05	90	55	4	31280863
Pubmed	Integration of repulsive guidance cues generates avascular zones that shape mammalian blood vessels.	SEMA3F SEMA3B FGFR4	1.63e-05	31	55	3	22076636
Pubmed	Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing.	SHROOM3 LMF1 PTPRG FRMPD2 PVR SEMA3B ANKIB1 PRKD1 UTRN ATP10A CLDN12	1.80e-05	1489	55	11	28611215
Pubmed	Impact of cytosine methylation on DNA binding specificities of human transcription factors.	HOXA13 TCF21 ZBTB22 IRF4 HAND2 FOXI1 FOSL1	2.34e-05	544	55	7	28473536
Pubmed	Dermal IRF4+ dendritic cells and monocytes license CD4+ T helper cells to distinct cytokine profiles.	CCR2 IRF4	2.45e-05	5	55	2	33159073
Pubmed	Dual functional activity of semaphorin 3B is required for positioning the anterior commissure.	SEMA3F SEMA3B	2.45e-05	5	55	2	16202709
Pubmed	Neuropilin2 regulates the guidance of post-crossing spinal commissural axons in a subtype-specific manner.	SEMA3F SEMA3B	2.45e-05	5	55	2	23902858
Pubmed	MHC II+ resident peritoneal and pleural macrophages rely on IRF4 for development from circulating monocytes.	CCR2 IRF4	2.45e-05	5	55	2	27551152
Pubmed	IRF8 Transcription-Factor-Dependent Classical Dendritic Cells Are Essential for Intestinal T Cell Homeostasis.	CCR2 IRF4	2.45e-05	5	55	2	27067057
Pubmed	Structural Basis for Interactions Between Contactin Family Members and Protein-tyrosine Phosphatase Receptor Type G in Neural Tissues.	CNTN4 PTPRG	2.45e-05	5	55	2	27539848
Pubmed	PlexinA1 signaling directs the segregation of proprioceptive sensory axons in the developing spinal cord.	SEMA3F PVR SEMA3B NTNG1	3.63e-05	117	55	4	17145500
Pubmed	Early developmental arrest of mammalian limbs lacking HoxA/HoxD gene function.	HOXA13 HAND2	3.67e-05	6	55	2	15973411
Pubmed	Digits in a dish: An in vitro system to assess the molecular genetics of hand/foot development at single-cell resolution.	HOXA13 PRG4	3.67e-05	6	55	2	36994104
Pubmed	Expression of class 3 semaphorins and neuropilin receptors in the developing mouse tooth.	SEMA3F SEMA3B	3.67e-05	6	55	2	11231073
Pubmed	Axonal wiring of guanylate cyclase-D-expressing olfactory neurons is dependent on neuropilin 2 and semaphorin 3F.	SEMA3F SEMA3B	3.67e-05	6	55	2	17942483
Pubmed	Semaphorins III and IV repel hippocampal axons via two distinct receptors.	SEMA3F SEMA3B	6.83e-05	8	55	2	9753685
Pubmed	Development of the somatosensory cortex, the cerebellum, and the main olfactory system in Semaphorin 3F knockout mice.	SEMA3F SEMA3B	6.83e-05	8	55	2	20006658
Pubmed	Requirement for core 2 O-glycans for optimal resistance to helminth infection.	CCR2 GCNT3	6.83e-05	8	55	2	23555902
Pubmed	Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection.	CCR2 IRF4	6.83e-05	8	55	2	32392463
Pubmed	Neuropilin-2 mediates axonal fasciculation, zonal segregation, but not axonal convergence, of primary accessory olfactory neurons.	SEMA3F SEMA3B	6.83e-05	8	55	2	11906695
Pubmed	IL-17-producing γδ T cells switch migratory patterns between resting and activated states.	CCR2 IRF4	6.83e-05	8	55	2	28580944
Pubmed	Donor colonic CD103+ dendritic cells determine the severity of acute graft-versus-host disease.	CCR2 IRF4	8.78e-05	9	55	2	26169940
Pubmed	Proximo-distal positional information encoded by an Fgf-regulated gradient of homeodomain transcription factors in the vertebrate limb.	HOXA13 HAND2	8.78e-05	9	55	2	32537491
Pubmed	Granulocyte Macrophage-Colony Stimulating Factor Produces a Splenic Subset of Monocyte-Derived Dendritic Cells That Efficiently Polarize T Helper Type 2 Cells in Response to Blood-Borne Antigen.	CCR2 IRF4	8.78e-05	9	55	2	35069539
Pubmed	Lung IFNAR1hi TNFR2+ cDC2 promotes lung regulatory T cells induction and maintains lung mucosal tolerance at steady state.	CCR2 IRF4	8.78e-05	9	55	2	31959883
Pubmed	Progression of vertebrate limb development through SHH-mediated counteraction of GLI3.	HOXA13 HAND2	1.10e-04	10	55	2	12215652
Pubmed	PRMT5 is necessary to form distinct cartilage identities in the knee and long bone.	PRMT5 PRG4	1.10e-04	10	55	2	31442442
Pubmed	Jagged2 targeting in lung cancer activates anti-tumor immunity via Notch-induced functional reprogramming of tumor-associated macrophages.	CCR2 IRF4	1.10e-04	10	55	2	38636522
Pubmed	A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract.	HOXA13 TCF21 ZBTB22 ZNF318 WDFY2 SF1 HAND2	1.23e-04	709	55	7	22988430
Pubmed	Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders.	CNTN4 SHROOM3 PPP3CB ZBTB22 PRKD1 ZNF318 UNC79 PRRC2B	1.29e-04	963	55	8	28671696
Pubmed	Class 3 semaphorins negatively regulate dermal lymphatic network formation.	SEMA3F SEMA3B	1.34e-04	11	55	2	26319580
Pubmed	Tbx1 regulates fibroblast growth factors in the anterior heart field through a reinforcing autoregulatory loop involving forkhead transcription factors.	TCF21 HAND2	1.34e-04	11	55	2	15469978
Pubmed	Evidence for intrinsic development of olfactory structures in Pax-6 mutant mice.	SEMA3F SEMA3B	1.34e-04	11	55	2	11074448
Pubmed	Semaphorin 3F is a bifunctional guidance cue for dopaminergic axons and controls their fasciculation, channeling, rostral growth, and intracortical targeting.	SEMA3F SEMA3B	1.60e-04	12	55	2	19812329
Pubmed	A balance of noncanonical Semaphorin signaling from the cerebrospinal fluid regulates apical cell dynamics during corticogenesis.	SEMA3F SEMA3B	1.60e-04	12	55	2	36399562
Pubmed	Deletion of Sema3a or plexinA1/plexinA3 causes defects in sensory afferent projections of statoacoustic ganglion neurons.	SEMA3F SEMA3B	1.60e-04	12	55	2	23991118
Pubmed	Dual role for LIM-homeodomain gene Lhx2 in the formation of the lateral olfactory tract.	SEMA3F NTNG1	1.60e-04	12	55	2	17329426
Pubmed	Role of neuropilin-2 in the ipsilateral growth of midbrain dopaminergic axons.	SEMA3F SEMA3B	1.89e-04	13	55	2	23534961
Pubmed	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	CNTN4 NTNG1	1.89e-04	13	55	2	21079607
Pubmed	Host-Protozoan Interactions Protect from Mucosal Infections through Activation of the Inflammasome.	CCR2 IRF4	2.21e-04	14	55	2	27716507
Pubmed	Cardiogenic genes expressed in cardiac fibroblasts contribute to heart development and repair.	TCF21 HAND2	2.54e-04	15	55	2	24650916
Pubmed	Hoxd and Gli3 interactions modulate digit number in the amniote limb.	HOXA13 HAND2	2.54e-04	15	55	2	17714700
Pubmed	Ezh2 regulates anteroposterior axis specification and proximodistal axis elongation in the developing limb.	HOXA13 HAND2	2.90e-04	16	55	2	21795281
Pubmed	Expression of the semaphorins Sema 3D and Sema 3F in the developing parathyroid and thymus.	SEMA3F SEMA3B	2.90e-04	16	55	2	18489001
Pubmed	Balance between BDNF and Semaphorins gates the innervation of the mammary gland.	SEMA3F SEMA3B	2.90e-04	16	55	2	30628891
Pubmed	Nipbl and mediator cooperatively regulate gene expression to control limb development.	HOXA13 HAND2	2.90e-04	16	55	2	25255084
Pubmed	Semaphorin signaling facilitates cleft formation in the developing salivary gland.	SEMA3F SEMA3B	3.29e-04	17	55	2	17626059
Pubmed	Comparative analysis of genes downstream of the Hoxd cluster in developing digits and external genitalia.	HOXA13 PAPSS2	3.29e-04	17	55	2	15944189
Pubmed	Geminin is required for Hox gene regulation to pattern the developing limb.	HOXA13 HAND2	3.29e-04	17	55	2	32450229
Pubmed	Nell1-deficient mice have reduced expression of extracellular matrix proteins causing cranial and vertebral defects.	PRKD1 FGFR4 PRG4 HAND2	3.46e-04	210	55	4	16537572
Pubmed	Distinct roles of Hand2 in initiating polarity and posterior Shh expression during the onset of mouse limb bud development.	HOXA13 HAND2	3.70e-04	18	55	2	20386744
Pubmed	Neuropilin-2/Semaphorin-3F-mediated repulsion promotes inner hair cell innervation by spiral ganglion neurons.	SEMA3F SEMA3B	3.70e-04	18	55	2	26302206
Pubmed	Notch2-dependent classical dendritic cells orchestrate intestinal immunity to attaching-and-effacing bacterial pathogens.	CCR2 IRF4	3.70e-04	18	55	2	23913046
Pubmed	Neurites from trigeminal ganglion explants grown in vitro are repelled or attracted by tooth-related tissues depending on developmental stage.	SEMA3F SEMA3B	4.13e-04	19	55	2	15051154
Pubmed	VEGF signaling through neuropilin 1 guides commissural axon crossing at the optic chiasm.	SEMA3F SEMA3B	4.58e-04	20	55	2	21658587
Pubmed	Hand2 loss-of-function in Hand1-expressing cells reveals distinct roles in epicardial and coronary vessel development.	TCF21 HAND2	4.58e-04	20	55	2	21350214
Pubmed	Motor neurons use push-pull signals to direct vascular remodeling critical for their connectivity.	SEMA3F SEMA3B	5.06e-04	21	55	2	36240771
Pubmed	Regulation of retinoic acid distribution is required for proximodistal patterning and outgrowth of the developing mouse limb.	HOXA13 HAND2	5.56e-04	22	55	2	15030763
Pubmed	Pbx1/Pbx2 requirement for distal limb patterning is mediated by the hierarchical control of Hox gene spatial distribution and Shh expression.	HOXA13 HAND2	6.08e-04	23	55	2	16672333
Pubmed	Generation of mice with functional inactivation of talpid3, a gene first identified in chicken.	HOXA13 HAND2	6.08e-04	23	55	2	21750036
Pubmed	Loss of semaphorin-neuropilin-1 signaling causes dysmorphic vascularization reminiscent of alveolar capillary dysplasia.	SEMA3F ABCA3	6.63e-04	24	55	2	23063659
Pubmed	A semaphorin code defines subpopulations of spinal motor neurons during mouse development.	SEMA3F SEMA3B	6.63e-04	24	55	2	15869472
Pubmed	FOG-2, a cofactor for GATA transcription factors, is essential for heart morphogenesis and development of coronary vessels from epicardium.	TCF21 HAND2	6.63e-04	24	55	2	10892744
Pubmed	Sall4-Gli3 system in early limb progenitors is essential for the development of limb skeletal elements.	HOXA13 HAND2	7.20e-04	25	55	2	25848055
Pubmed	Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry.	CNTN4 PTPRG PVR PRG4	7.39e-04	257	55	4	16335952
Pubmed	A Wnt7b-dependent pathway regulates the orientation of epithelial cell division and establishes the cortico-medullary axis of the mammalian kidney.	TCF21 FOXI1	7.79e-04	26	55	2	19060336
Pubmed	Redundant and dosage sensitive requirements for Fgf3 and Fgf10 in cardiovascular development.	TCF21 HAND2	7.79e-04	26	55	2	21664901
Pubmed	Expression of Robo/Slit and Semaphorin/Plexin/Neuropilin family members in the developing hypothalamic paraventricular and supraoptic nuclei.	SEMA3F SEMA3B	9.04e-04	28	55	2	18617019
Pubmed	Rescue of cytochrome P450 oxidoreductase (Por) mouse mutants reveals functions in vasculogenesis, brain and limb patterning linked to retinoic acid homeostasis.	HOXA13 HAND2	9.04e-04	28	55	2	17126317
Pubmed	Noggin is required for correct guidance of dorsal root ganglion axons.	SEMA3F SEMA3B	9.70e-04	29	55	2	12435358
Pubmed	Anteroposterior Limb Skeletal Patterning Requires the Bifunctional Action of SWI/SNF Chromatin Remodeling Complex in Hedgehog Pathway.	HOXA13 HAND2	9.70e-04	29	55	2	26959361
Pubmed	Mapping a dynamic innate immunity protein interaction network regulating type I interferon production.	PPP3CB IRF4 ATG9A PRRC2B	1.06e-03	283	55	4	21903422
Pubmed	Fezl regulates the differentiation and axon targeting of layer 5 subcortical projection neurons in cerebral cortex.	SEMA3F SEMA3B NTNG1	1.06e-03	126	55	3	16284245
Pubmed	c-Jun is required for the specification of joint cell fates.	PRG4 FOSL1	1.11e-03	31	55	2	23475960
Pubmed	Hepatocyte nuclear factor 4alpha is essential for embryonic development of the mouse colon.	TCF21 MUC4	1.26e-03	33	55	2	16618389
Pubmed	Histone arginine methylation by Prmt5 is required for lung branching morphogenesis through repression of BMP signaling.	ABCA3 PRMT5	1.26e-03	33	55	2	29950483
Pubmed	Phenotypic and Interaction Profiling of the Human Phosphatases Identifies Diverse Mitotic Regulators.	PTPN3 PPP3CB PTPRG XPO4 UNG UTRN PRRC2B	1.28e-03	1049	55	7	27880917
Pubmed	CCT chaperonin complex is required for efficient delivery of anthrax toxin into the cytosol of host cells.	PTPRG TRIP4	1.41e-03	35	55	2	23716698
Pubmed	Quantifying domain-ligand affinities and specificities by high-throughput holdup assay.	PTPN3 FRMPD2	1.49e-03	36	55	2	26053890
Pubmed	GLI3 constrains digit number by controlling both progenitor proliferation and BMP-dependent exit to chondrogenesis.	HOXA13 HAND2	1.58e-03	37	55	2	22465667
Cytoband	7p22.1	RSPH10B2 RSPH10B	1.47e-03	47	55	2	7p22.1
Cytoband	3p21.3	SEMA3F SEMA3B	2.31e-03	59	55	2	3p21.3
GeneFamily	PDZ domain containing	RHPN1 PTPN3 SHROOM3 FRMPD2	4.59e-04	152	43	4	1220
GeneFamily	Fibronectin type III domain containing	CNTN4 PTPRG EGFLAM USH2A	5.57e-04	160	43	4	555
GeneFamily	Immunoglobulin like domain containing\|Semaphorins	SEMA3F SEMA3B	1.02e-03	20	43	2	736
GeneFamily	Immunoglobulin like domain containing	SEMA3F CNTN4 PVR SEMA3B	1.12e-03	193	43	4	594
ToppCell	Children_(3_yrs)-Epithelial-alveolar_epithelial_cell_type_2-D139\|Children_(3_yrs) / Lineage, Cell type, age group and donor	CNTN4 SIAE PTPN3 SHROOM3 ABCA3 PTPRG	1.36e-07	192	55	6	cc9911e182a289779a2612bc213daae5607689e7
ToppCell	Adult-Epithelial-alveolar_epithelial_cell_type_2-D122\|Adult / Lineage, Cell type, age group and donor	CNTN4 SIAE SHROOM3 ABCA3 PTPRG PRKD1	1.36e-07	192	55	6	06013a07e3a873b1d1c0451643c528593ac32a9c
ToppCell	Children_(3_yrs)-Mesenchymal-matrix_fibroblast_1_cell\|Children_(3_yrs) / Lineage, Cell type, age group and donor	TCF21 PTPRG RBMS3 NTNG1 PRKD1 FGFR4	1.40e-07	193	55	6	99525545552b371c86b18b6ea6f4897dc6e9a9ec
ToppCell	Control-Stromal-Myofibroblast\|World / Disease state, Lineage and Cell class	PTPRG RBMS3 NTNG1 PRKD1 FGFR4 PRG4	1.45e-07	194	55	6	3c2266772c5b56e8e02a461e5193e29588028ee9
ToppCell	Control-Stromal-Myofibroblast\|Control / Disease state, Lineage and Cell class	TCF21 RBMS3 NTNG1 PRKD1 FGFR4 PRG4	1.49e-07	195	55	6	ffcf76cd72e43d8cf1058a49c76e0956065038bc
ToppCell	3'-GW_trimst-2-LargeIntestine-Epithelial-epithelial_progenitor_cell\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	HOXA13 SIAE SHROOM3 WNK4 FOSL1	2.23e-06	171	55	5	3ef44a5e3e8f81424f1e9aa302860b6688a549b8
ToppCell	3'-GW_trimst-2-LargeIntestine-Epithelial-epithelial_progenitor_cell-Stem_cells\|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract	HOXA13 SIAE SHROOM3 WNK4 FOSL1	2.23e-06	171	55	5	3a2fefcb62e9d47ae6b3a946c45d3f2dd32c576c
ToppCell	Somatosensory_Cortex_(S1)-Neuronal-Glutamatergic_Excit-Glut_C-D_(RORB)-Glut_D_(IT_RORB_THEMIS_LINC00507)_2-Exc_L3-4_RORB_PRSS12\|Somatosensory_Cortex_(S1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types	PTPN3 SHROOM3 NTNG1 PAPSS2 UTRN	2.43e-06	174	55	5	ae363ce736fc8af439f3ad594d7bc2e344db80d4
ToppCell	IPF-Epithelial-Mesothelial\|IPF / Disease state, Lineage and Cell class	SEMA3B NTNG1 PRKD1 PRG4 FOSL1	2.87e-06	180	55	5	1fa54bf4dba72866b2295639d991af639341bc08
ToppCell	390C-Fibroblasts-Fibroblast-G\|390C / Donor, Lineage, Cell class and subclass (all cells)	TCF21 RBMS3 NTNG1 FGFR4 PRG4	2.87e-06	180	55	5	137fc14859c89e1ecd98bee388bb58c04b835847
ToppCell	390C-Fibroblasts-Fibroblast-G-\|390C / Donor, Lineage, Cell class and subclass (all cells)	TCF21 RBMS3 NTNG1 FGFR4 PRG4	2.87e-06	180	55	5	cd6790de050151fedfa2c5ea6ad58b72665414b2
ToppCell	TCGA-Pancreas-Primary_Tumor-Pancreatic_Adenocarcinoma-Ductal_Adenocarcinoma-4\|TCGA-Pancreas / Sample_Type by Project: Shred V9	CCR2 CNTN4 PTPRG RBMS3 UTRN	3.19e-06	184	55	5	67164bb6bcae7322cb89b585c7aa10bce35b0ecd
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Distal_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell-Macula_Densa_Cell\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	PTPN3 SLC16A5 PRKD1 PAPSS2 WNK4	3.19e-06	184	55	5	8fd8bd3d28d0ee6f0ef1f14e354d8eaf63a8081b
ToppCell	Adult-Epithelial-alveolar_epithelial_cell_type_1-D175\|Adult / Lineage, Cell type, age group and donor	CNTN4 SHROOM3 RBMS3 PAPSS2 ATP10A	3.28e-06	185	55	5	32b4e68e551d435a732f253f6ad83408c759a642
ToppCell	COVID-19-Epithelial_cells-Airway_club\|COVID-19 / group, cell type (main and fine annotations)	CNTN4 PTPN3 SHROOM3 RBMS3 MUC4	3.28e-06	185	55	5	cfe6fd73d817e173fe803bc1683c291d9bcb8608
ToppCell	Children_(3_yrs)-Epithelial-alveolar_epithelial_cell_type_1-D139\|Children_(3_yrs) / Lineage, Cell type, age group and donor	CNTN4 SHROOM3 RBMS3 SEMA3B PAPSS2	3.46e-06	187	55	5	d4b0afd9b92c47c8aa348bbd1af7eb54c3d478f2
ToppCell	Adult-Epithelial-alveolar_epithelial_cell_type_1\|Adult / Lineage, Cell type, age group and donor	CNTN4 SHROOM3 RBMS3 SEMA3B PAPSS2	3.46e-06	187	55	5	77f78aec946bc6bd85c29aee9ca978ce49f853a3
ToppCell	nucseq-Mesenchymal-Fibroblastic-Fibroblastic_2-AF1\|nucseq / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	PTPRG RBMS3 NTNG1 PRKD1 FGFR4	3.83e-06	191	55	5	6688cee34beee4f151ac17fccbc9c26a9aad72e1
ToppCell	nucseq-Mesenchymal-Fibroblastic-Fibroblastic_2\|nucseq / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	PTPRG RBMS3 NTNG1 PRKD1 FGFR4	3.93e-06	192	55	5	99ce9e3c4c50cf64ebb62145f2b5420efa0db309
ToppCell	Children_(3_yrs)-Mesenchymal-matrix_fibroblast_1_cell-D032\|Children_(3_yrs) / Lineage, Cell type, age group and donor	PTPRG RBMS3 NTNG1 PRKD1 FGFR4	4.03e-06	193	55	5	b3ad5ff480d99217f36cc7471e5a96a519ddb409
ToppCell	Children_(3_yrs)-Mesenchymal-matrix_fibroblast_1_cell-D139\|Children_(3_yrs) / Lineage, Cell type, age group and donor	PTPRG RBMS3 NTNG1 PRKD1 FGFR4	4.13e-06	194	55	5	e93de9428c986b8943fc169258847c650cfab0e5
ToppCell	Anterior_Cingulate_gyrus_(CgG)-Neuronal-Inh_GABAergic-i_Gaba_1\|Anterior_Cingulate_gyrus_(CgG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types	SEMA3F RBMS3 NTNG1 PAPSS2 UTRN	4.13e-06	194	55	5	52aebb0b563e2c2058e7f0554ae870e47692b163
ToppCell	Anterior_Cingulate_gyrus_(CgG)-Neuronal-Inh_GABAergic-i_Gaba_1-GABA_L1_LAMP5\|Anterior_Cingulate_gyrus_(CgG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types	SEMA3F RBMS3 NTNG1 PAPSS2 UTRN	4.13e-06	194	55	5	bd06e2b8d8c06cddf2e4f58849b86e09013acae1
ToppCell	TCGA-Adrenal-Primary_Tumor-Adrenocortical_carcinoma-Usual_Type\|TCGA-Adrenal / Sample_Type by Project: Shred V9	HOXA13 EBP UNG ST8SIA5 FGFR4	4.24e-06	195	55	5	c3280bb6219e2eff5e24ef45aa2d76479a562122
ToppCell	Bronchial-NucSeq-Epithelial-Epi_alveolar-AT2\|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations	SIAE SHROOM3 ABCA3 PTPRG PRKD1	4.57e-06	198	55	5	f948391296c261c473d339069a6d0f20ccd6f38f
ToppCell	Parenchymal-NucSeq-Epithelial-Epi_alveolar-AT2\|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations	SIAE SHROOM3 ABCA3 PTPRG PRKD1	4.57e-06	198	55	5	2e2a4e1756bba6f4fbe529559a97d2993c890b4b
ToppCell	(5)_Fibroblast-G\|World / Lung cell shreds - cell class (v4) and cell subclass (v4)	TCF21 RBMS3 NTNG1 FGFR4 PRG4	4.68e-06	199	55	5	b4a737575be9f8c65771832dd8cd25328d5dae0d
ToppCell	COVID-19-lung\|COVID-19 / Disease (COVID-19 only), tissue and cell type	ABCA3 PARP9 PAPSS2 UTRN ATP10A	4.68e-06	199	55	5	155b03b859157013e9142e9248551369127d9204
ToppCell	343B-Fibroblasts-Fibroblast-G\|343B / Donor, Lineage, Cell class and subclass (all cells)	TCF21 RBMS3 NTNG1 FGFR4 PRG4	4.68e-06	199	55	5	f4b6c095cbe7a38b310adc49be4069e4d56e6a66
ToppCell	343B-Fibroblasts-Fibroblast-G-\|343B / Donor, Lineage, Cell class and subclass (all cells)	TCF21 RBMS3 NTNG1 FGFR4 PRG4	4.68e-06	199	55	5	9c6d1c328bfbb6547f4c7bb2a784576a56bd72af
ToppCell	Hematolymphoid-Endothelial-NOSTRIN\|Hematolymphoid / cells hierarchy compared to all cells using T-Statistic	PTPRG RBMS3 SEMA3B PRKD1 ATP10A	4.79e-06	200	55	5	032df80aa5c40991e1c1e80f9d8da106e6aeaee2
ToppCell	Biopsy_IPF-Mesenchymal-Mesothelial_cells\|Biopsy_IPF / Sample group, Lineage and Cell type	SEMA3B NTNG1 PRG4 HAND2 FOSL1	4.79e-06	200	55	5	553386523fd8f8f36617a0d81032224b7ddce442
ToppCell	Parenchyma_Control_(B.)-Stromal-TX-Fibroblasts-1\|Parenchyma_Control_(B.) / Sample group, Lineage and Cell type	TCF21 RBMS3 NTNG1 FGFR4 PRG4	4.79e-06	200	55	5	aa1a35dcca3b799241eef4237f6eb94660e019f0
ToppCell	Hematolymphoid-Endothelial-NOSTRIN---\|Hematolymphoid / cells hierarchy compared to all cells using T-Statistic	PTPRG RBMS3 SEMA3B PRKD1 ATP10A	4.79e-06	200	55	5	68fce28690246895fd33354b30960ebcc31aa4cc
ToppCell	Hematolymphoid-Endothelial-NOSTRIN-\|Hematolymphoid / cells hierarchy compared to all cells using T-Statistic	PTPRG RBMS3 SEMA3B PRKD1 ATP10A	4.79e-06	200	55	5	376b19ab5a7cd2c85f726d8ba41337d4525863e5
ToppCell	Lung_Parenchyma-Control-Mesenchymal-Mesenchymal-Fibroblasts-1\|Control / Location, Disease Group, Cell group, Cell class (2021.03.09)	TCF21 RBMS3 NTNG1 FGFR4 PRG4	4.79e-06	200	55	5	a510deaada669e690329183e18df02870bd204b3
ToppCell	Hematolymphoid-Endothelial-NOSTRIN--\|Hematolymphoid / cells hierarchy compared to all cells using T-Statistic	PTPRG RBMS3 SEMA3B PRKD1 ATP10A	4.79e-06	200	55	5	7fa54370221ed61bac0e09e6bcf1f3dff202a846
ToppCell	Hematolymphoid-Endothelial-NOSTRIN----L2-6\|Hematolymphoid / cells hierarchy compared to all cells using T-Statistic	PTPRG RBMS3 SEMA3B PRKD1 ATP10A	4.79e-06	200	55	5	878bbbe32e3602723aa14ef32877ab2453b8c6e5
ToppCell	Hematolymphoid-Endothelial\|Hematolymphoid / cells hierarchy compared to all cells using T-Statistic	PTPRG RBMS3 SEMA3B PRKD1 ATP10A	4.79e-06	200	55	5	7136936d05ab344a560cf159684c881063b5430d
ToppCell	Lung_Parenchyma-Control-Mesenchymal-Mesenchymal-Fibroblasts-1-\|Control / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	TCF21 RBMS3 NTNG1 FGFR4 PRG4	4.79e-06	200	55	5	dd4228cbed8a4395166a6332e08d44d88bebe3b9
ToppCell	LPS-IL1RA+antiTNF-Epithelial_alveolar-AT_2-Differentiating_AT1\|LPS-IL1RA+antiTNF / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	SHROOM3 ABCA3 PVR UTRN	2.02e-05	130	55	4	6434d9106ccb38786dad36fab80163dfc07b6eb7
ToppCell	343B-Lymphocytic-NK_cells-NK_cell_D2\|Lymphocytic / Donor, Lineage, Cell class and subclass (all cells)	RHPN1 ZBTB22 UNG CLDN12	4.34e-05	158	55	4	74aa4f75307575ac3b2b1aa9f727753692f88742
ToppCell	343B-Lymphocytic-NK_cells-NK_cell_D2\|NK_cells / Donor, Lineage, Cell class and subclass (all cells)	RHPN1 ZBTB22 UNG CLDN12	4.67e-05	161	55	4	58381131e651744b5141b202f9d6063f55432db5
ToppCell	RV-13._Vascular_Smooth_Muscle\|RV / Chamber and Cluster_Paper	CNTN4 EGFLAM UTRN ATP10A	4.67e-05	161	55	4	47b3b7662cbb671ccc086dc0a0cabd65f63eb5a1
ToppCell	367C-Fibroblasts-Fibroblast-G\|367C / Donor, Lineage, Cell class and subclass (all cells)	TCF21 RBMS3 FGFR4 PRG4	5.51e-05	168	55	4	8c95093b1ea45826f62893edd3c410fe53b563a4
ToppCell	367C-Fibroblasts-Fibroblast-G-\|367C / Donor, Lineage, Cell class and subclass (all cells)	TCF21 RBMS3 FGFR4 PRG4	5.51e-05	168	55	4	b8c65542a0701ae31f49d332d87a64578e24b4e3
ToppCell	-Donor_05\|World / lung cells shred on cell class, cell subclass, sample id	TCF21 NTNG1 FGFR4 PRG4	5.64e-05	169	55	4	8ebe9a88111c53a09c25a7b6a164a0a17880458d
ToppCell	368C-Myeloid-Dendritic-pDC\|Myeloid / Donor, Lineage, Cell class and subclass (all cells)	RHPN1 LMF1 ANKIB1 IRF4	5.91e-05	171	55	4	714a0b0d0c9886fef64170cf53eb64f0d8a47280
ToppCell	TCGA-Adrenal-Primary_Tumor-Adrenocortical_carcinoma-Usual_Type-4\|TCGA-Adrenal / Sample_Type by Project: Shred V9	HOXA13 EBP UNG ST8SIA5	6.32e-05	174	55	4	15e2b9f46404ff9575e149024b24cb17b50b02b5
ToppCell	kidney_cells-Hypertensive_with+without-CKD-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast-Adaptive_/_Maladaptive_/_Repairing_Fibroblast\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	CNTN4 TCF21 RBMS3 EGFLAM	6.32e-05	174	55	4	9c916af5eebd932f67dc9117e1d26ff194a2ff2c
ToppCell	kidney_cells-Hypertensive_with+without-CKD-Mesenchymal-Fibroblast-kidney_interstitial_fibroblast\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	CNTN4 TCF21 RBMS3 EGFLAM	6.32e-05	174	55	4	bc71521f44a5fe013af42b06b5d1bd2446ecf3b5
ToppCell	Control-Epithelial_cells-AT1\|Control / group, cell type (main and fine annotations)	SHROOM3 RBMS3 SEMA3B PAPSS2	6.32e-05	174	55	4	548d7f2b958a2bfd2c95eb049ceaab55a559c77d
ToppCell	PND10-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1/AT2\|PND10 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	PTPN3 SLC26A8 SEMA3B XPO4	6.46e-05	175	55	4	442f261a3b2c4d2523f7d4089178f8c79cac2f0f
ToppCell	PND10-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT1/AT2-AT1/AT2_mature\|PND10 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif	PTPN3 SLC26A8 SEMA3B XPO4	6.46e-05	175	55	4	35fb7735dd3355476fe60404833cb60bd066bcf1
ToppCell	356C-Myeloid-Macrophage-FABP4+_Macrophage_3\|Macrophage / Donor, Lineage, Cell class and subclass (all cells)	RSPH10B2 TCF21 RBMS3 HAND2	6.60e-05	176	55	4	bfa1633e1b7a8a2f04d37fa07284fe9bc0199f46
ToppCell	Primary_Motor_Cortex_(M1)-Neuronal-Glutamatergic_Excit-Glut_C-D_(RORB)-Glut_D_(IT_RORB_THEMIS_LINC00507)_5-Exc_L4-5_RORB_LINC01474\|Primary_Motor_Cortex_(M1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types	PTPN3 FRMPD2 NTNG1 PAPSS2	6.60e-05	176	55	4	cd4b9211652596c42e7af318bcd464681daebb10
ToppCell	primary_auditory_cortex_(A1C)-Neuronal-Glutamatergic_Excit-Glut_C-D_(RORB)-Glut_D_(IT_RORB_THEMIS_LINC00507)_2-Exc_L3-4_RORB_PRSS12\|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types	SHROOM3 FRMPD2 NTNG1 UTRN	6.60e-05	176	55	4	40993c41c1017b53039a337174fc56632b278609
ToppCell	renal_medulla_nuclei-Hypertensive_with+without-CKD-Mesenchymal-Myocytic_interstitial_cell-Vascular_Smooth_Muscle_Cell_/_Pericyte-\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	CNTN4 RBMS3 UTRN ATP10A	6.75e-05	177	55	4	4943d040eee0f9dceaddc7498171281d170e271f
ToppCell	356C-Myeloid-Macrophage-FABP4+_Macrophage_3\|Myeloid / Donor, Lineage, Cell class and subclass (all cells)	RSPH10B2 PTPRG RBMS3 HAND2	6.75e-05	177	55	4	3d955ea938a1d2fb1b6d68d4997fd454bd632dfc
ToppCell	renal_medulla_nuclei-Hypertensive_with+without-CKD-Mesenchymal-Myocytic_interstitial_cell-Vascular_Smooth_Muscle_Cell_/_Pericyte\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	CNTN4 RBMS3 UTRN ATP10A	6.75e-05	177	55	4	3f2272b577c862dba8ccfb41184054bbd0ace6f5
ToppCell	wk_15-18-Epithelial-PNS-COL20A1+_Schwann\|wk_15-18 / Celltypes from embryonic and fetal-stage human lung	CNTN4 EGFLAM UNC79 HAND2	6.75e-05	177	55	4	b8cc6a7abf83a9844a5293b6cc4b19135b51fd53
ToppCell	PCW_13-14-Neuronal-Neuronal_postreplicative-neuro_NA\|PCW_13-14 / Celltypes from embryonic and fetal-stage human lung	SEMA3B ST8SIA5 EGFLAM HAND2	6.75e-05	177	55	4	8c78f7de091f16e86e326a73c9f1429e0232821f
ToppCell	PCW_05-06-Neuronal-Neuronal_SCP-neuro_pre_proliferating_SCP_(4)\|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung	SEMA3B ST8SIA5 EGFLAM HAND2	6.75e-05	177	55	4	59726bfd98f656fdcedf448a7e2e76a9bfad8285
ToppCell	(3)_Chondrocytes-(32)_Chondro-prehyper-2\|World / Cell class and subclass of bone marrow stroma cells in homeostatis	OGFRL1 NTNG1 PAPSS2 WNK4	6.90e-05	178	55	4	c569a406c3ae183a278d8540e8eba58f4f26c5b0
ToppCell	Somatosensory_Cortex_(S1)-Neuronal-Glutamatergic_Excit-Glut_C-D_(RORB)-Glut_D_(IT_RORB_THEMIS_LINC00507)_5-Exc_L4-5_RORB_LINC01474\|Somatosensory_Cortex_(S1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types	PTPN3 FRMPD2 NTNG1 PAPSS2	6.90e-05	178	55	4	5522b179c2e7dd707de01e2df10556349d0382a6
ToppCell	human_hepatoblastoma-Tumor_cells-T6\|Tumor_cells / Sample and Cell Type and Tumor Cluster (all cells)	PTPRG RBMS3 EGFLAM ATP10A	7.05e-05	179	55	4	14fc8ccb6b215063d747643f47d780d2b237eb67
ToppCell	Control-Epithelial_cells-AT2\|Control / group, cell type (main and fine annotations)	SHROOM3 ABCA3 PTPRG PRKD1	7.21e-05	180	55	4	198b19e7910b4a8cc7e820c525ab357c7f99f578
ToppCell	PCW_10-12-Neuronal-Neuronal_postreplicative\|PCW_10-12 / Celltypes from embryonic and fetal-stage human lung	SEMA3B ST8SIA5 EGFLAM HAND2	7.36e-05	181	55	4	1aebb62ed4439db444ee9d30688212b86ee3d9ef
ToppCell	PCW_10-12-Neuronal-Neuronal_postreplicative-neuro_NA\|PCW_10-12 / Celltypes from embryonic and fetal-stage human lung	SEMA3B ST8SIA5 EGFLAM HAND2	7.36e-05	181	55	4	6aee2ddee4790250ef3b2ef0038bd9839925c995
ToppCell	RA-07._Pericyte\|RA / Chamber and Cluster_Paper	RBMS3 EGFLAM UTRN ATP10A	7.36e-05	181	55	4	8dfb42d096db6c2df9b41303a7199d134d4bff07
ToppCell	PCW_10-12-Neuronal\|PCW_10-12 / Celltypes from embryonic and fetal-stage human lung	SEMA3B ST8SIA5 EGFLAM HAND2	7.36e-05	181	55	4	381b553e2cae65ce6be100662a5f9f963353840c
ToppCell	Fetal_29-31_weeks-Epithelial-alveolar_epithelial_cell_type_1/2_(AT1/AT2-like)-D088\|Fetal_29-31_weeks / Lineage, Cell type, age group and donor	SHROOM3 ABCA3 SLC16A5 MUC4	7.36e-05	181	55	4	576da14ab3107f89e1f44a4a439d1bef5bb42370
ToppCell	renal_medulla_nuclei-Hypertensive_with+without-CKD-Epithelial-Distal_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell-Macula_Densa_Cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	PTPN3 SLC16A5 PAPSS2 WNK4	7.36e-05	181	55	4	22363c5835dd6cef8f895ab9362e0837d92b15b1
ToppCell	Control-Epithelial_cells-Airway_club\|Control / group, cell type (main and fine annotations)	CNTN4 SHROOM3 RBMS3 MUC4	7.36e-05	181	55	4	c755d23dd9aabc717dc73e2b3fa99a1f751e6507
ToppCell	RA-07._Pericyte\|World / Chamber and Cluster_Paper	CNTN4 RBMS3 UTRN ATP10A	7.52e-05	182	55	4	2075efeae633550fb2eb026d0dfd741c8252482e
ToppCell	PCW_07-8.5-Neuronal-Neuronal_SCP-neuro_pre_proliferating_SCP_(4)\|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung	SEMA3B ST8SIA5 EGFLAM HAND2	7.52e-05	182	55	4	bfb725fff3d20066d8ac0a6ba2f88498fcbd876e
ToppCell	facs-Lung-nan-3m-Mesenchymal-fibroblast_of_lung\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	TCF21 RBMS3 FGFR4 PAPSS2	7.52e-05	182	55	4	c557de6ccd327c46e0a5423cd9936d78e0abae5f
ToppCell	droplet-Kidney-nan-18m-Mesenchymal-podocyte\|Kidney / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	TCF21 RBMS3 NTNG1 EGFLAM	7.52e-05	182	55	4	e3248d108b51c49ca2c978636e13017e23b53860
ToppCell	facs-Lung-nan-3m-Mesenchymal-Alveolar_Fibroblast\|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	TCF21 RBMS3 FGFR4 PAPSS2	7.52e-05	182	55	4	dbe4b2557cf19e0682ed446f8397d3a1153642f0
ToppCell	COVID-19-lung-AT1\|COVID-19 / Disease (COVID-19 only), tissue and cell type	SHROOM3 ABCA3 SEMA3B ATP10A	7.68e-05	183	55	4	7b1a385ed54f93bfe85bf0c162e42d05d516b45c
ToppCell	LA-07._Pericyte\|World / Chamber and Cluster_Paper	CNTN4 RBMS3 EGFLAM UTRN	7.68e-05	183	55	4	e3835db4795362b0442d5893baf2a78efcc20428
ToppCell	COPD-Epithelial-ATII\|World / Disease state, Lineage and Cell class	SHROOM3 ABCA3 PTPRG PRKD1	7.68e-05	183	55	4	8e9aab4eeec2e282c2cab9bfca6dbf40d660c7b9
ToppCell	LPS_only-Epithelial_alveolar-AT_1-Differentiating_AT1\|LPS_only / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	SHROOM3 ABCA3 SEMA3B UTRN	7.85e-05	184	55	4	42ce855b4f8475a8298192feec785bdc69bc5bb0
ToppCell	nucseq-Epithelial-Epithelial_Alveolar-AT1-AT1\|nucseq / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	SHROOM3 RBMS3 SEMA3B UTRN	7.85e-05	184	55	4	57c792e6e2fedba25d3350ffe649fd74750b579d
ToppCell	renal_cortex_nuclei-Hypertensive_with+without-CKD-Epithelial-Distal_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell-Macula_Densa_Cell\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	SLC16A5 PRKD1 PAPSS2 WNK4	7.85e-05	184	55	4	d33de57876817050b294f2ecb0a4eb0634cfa7f0
ToppCell	Children_(3_yrs)-Epithelial-alveolar_epithelial_cell_type_2/Club-like_(AT2/Club-like)-D139\|Children_(3_yrs) / Lineage, Cell type, age group and donor	RHPN1 CNTN4 PTPN3 SHROOM3	7.85e-05	184	55	4	102105ae1a5ef6d42a43f6d9b00f12ed0690ddb7
ToppCell	nucseq-Epithelial-Epithelial_Alveolar-AT1\|nucseq / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	SHROOM3 RBMS3 SEMA3B UTRN	7.85e-05	184	55	4	d7bd0f0c607bade67c99e9fb3578a570298bf926
ToppCell	Control-Epithelial_alveolar-AT_2-Differentiating_AT2\|Control / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	PTPN3 SHROOM3 ABCA3 PRKD1	8.01e-05	185	55	4	0d2add28ac1f4fa6de7699be009bf8391badaf4c
ToppCell	COVID-19-Fibroblasts-Pericytes\|COVID-19 / group, cell type (main and fine annotations)	CNTN4 PTPRG RBMS3 EGFLAM	8.01e-05	185	55	4	4905adaeeffd353e089578e5ea614437dbe794e6
ToppCell	LV-07._Pericyte\|LV / Chamber and Cluster_Paper	CNTN4 RBMS3 EGFLAM UTRN	8.01e-05	185	55	4	acb38eba871ec72f2a8136a33b87d33b8c85465d
ToppCell	LPS-IL1RA-Epithelial_alveolar-AT_1-Differentiating_AT2\|LPS-IL1RA / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	SHROOM3 ABCA3 SEMA3B UTRN	8.18e-05	186	55	4	4e94158db52df41d71e67b02b9895a358eebee0f
ToppCell	RV-07._Pericyte\|RV / Chamber and Cluster_Paper	CNTN4 RBMS3 EGFLAM UTRN	8.18e-05	186	55	4	c533b264fbe12bc35467486fc7fbde24ba968fe1
ToppCell	COVID-19-Fibroblasts-Airway_smooth_muscle\|COVID-19 / group, cell type (main and fine annotations)	CNTN4 PTPRG RBMS3 PRKD1	8.35e-05	187	55	4	464a0c3b92b778911b5f9cd73642e09e3472063a
ToppCell	Control-Fibroblasts-Alveolar_FB\|Control / group, cell type (main and fine annotations)	PTPRG RBMS3 NTNG1 PRKD1	8.35e-05	187	55	4	92d468dde81125d51daf7abd4703741abe1ab91c
ToppCell	LPS-antiTNF-Epithelial_alveolar-AT_1-Differentiating_AT2\|LPS-antiTNF / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2	SHROOM3 ABCA3 SEMA3B UTRN	8.35e-05	187	55	4	58d48128547ee3513d0bf7f78e61b76b1c472ca9
ToppCell	LA-13._Vascular_Smooth_Muscle\|LA / Chamber and Cluster_Paper	CNTN4 SHROOM3 PRKD1 ATP10A	8.52e-05	188	55	4	34e1b074a3995aa46ab194eb45115d76d1a5514d
ToppCell	renal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Distal_tubule_epithelial_cell-kidney_loop_of_Henle_thick_ascending_limb_epithelial_cell-Cortical_Thick_Ascending_Limb_Cell\|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group	SLC16A5 PRKD1 PAPSS2 WNK4	8.52e-05	188	55	4	2ee64bc73a2251fd9f374be759b442cf4ed0d19e
ToppCell	COVID-19-Epithelial_cells\|COVID-19 / group, cell type (main and fine annotations)	PTPN3 SHROOM3 ABCA3 MUC4	8.52e-05	188	55	4	c9cdee6f8d42ee69f5fb335f25084603c511bd29
ToppCell	kidney_cells-Hypertensive_with+without-CKD-Epithelial-Renal_corpuscle_epithelial_cell-glomerular_visceral_epithelial_cell-Degenerative_Podocyte\|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group	TCF21 NTNG1 PRG4 ATP10A	8.52e-05	188	55	4	9db778c1d9e622a68337212296e3a1ed8f771fa5
ToppCell	COPD-Epithelial-ATII\|COPD / Disease state, Lineage and Cell class	SHROOM3 ABCA3 PTPRG PRKD1	8.52e-05	188	55	4	eb6d79d733b53f64ca615bb777c64ed456866549
Drug	Mephentermine hemisulfate [1212-72-2]; Up 200; 9.4uM; PC3; HT_HG-U133A	RBMS3 PVR SEMA3B IRF4 FGFR4 ATP10A	7.92e-06	197	55	6	3685_UP
Drug	Proparacaine hydrochloride [5875-06-9]; Up 200; 12uM; MCF7; HT_HG-U133A	PVR IRF4 PRKD1 ZNF318 PRG4 UTRN	8.39e-06	199	55	6	6492_UP
Disease	xerostomia	SHROOM3 EGFLAM	9.14e-05	8	54	2	EFO_0009869
Disease	Coronavirus infectious disease (implicated_via_orthology)	CCR2 MUC4	1.17e-04	9	54	2	DOID:0080599 (implicated_via_orthology)
Disease	gamma-glutamylglutamate measurement	PRKD1 ZNF318	2.95e-04	14	54	2	EFO_0021137
Disease	serum urea measurement	SHROOM3 ZNF318 FGFR4 FOSL1	4.52e-04	195	54	4	EFO_0009795
Disease	age at first sexual intercourse measurement	SEMA3F IRF4 PRKD1 UTRN UNC79	6.73e-04	383	54	5	EFO_0009749
Disease	urate measurement, bone density	CNTN4 SLC26A8 PTPRG USH2A UTRN PRRC2B	9.14e-04	619	54	6	EFO_0003923, EFO_0004531
Disease	depressive symptom measurement	PTPRG RBMS3 SEMA3B ST8SIA5 PRKD1	1.08e-03	426	54	5	EFO_0007006
Disease	glomerular filtration rate, response to platinum based chemotherapy	CNTN4 RBMS3	1.21e-03	28	54	2	EFO_0004647, EFO_0005208
Disease	oral squamous cell carcinoma (is_implicated_in)	CCR2 FGFR4	1.21e-03	28	54	2	DOID:0050866 (is_implicated_in)
Disease	thoracic aortic aneurysm	CNTN4 PTPN3	1.38e-03	30	54	2	EFO_0004282
Disease	Colorectal Neoplasms	ABCA3 NTNG1 UNG PRKD1	1.66e-03	277	54	4	C0009404
Disease	Colorectal Carcinoma	CNTN4 ABCA3 FRMPD2 NTNG1 UNG PRKD1	1.74e-03	702	54	6	C0009402
Disease	body fat percentage	HOXA13 PTPRG NTNG1 UNC79 PRRC2B	1.97e-03	488	54	5	EFO_0007800
Disease	Neuroblastoma	SEMA3B HAND2	3.37e-03	47	54	2	C0027819

Protein segments in the cluster

Peptide	Gene	Start	Entry
SWSQPETIYHPPIMN	PTPRG	366	P23470
TVYPPPHQVFTWTQM	UNG	126	P13051
PATHWPLYAQLMPHS	nan	21	Q75L30
ATPWPLEPQHYLSFM	EGFLAM	621	Q63HQ2
SYPQQAPYWTHPQRM	FGFR4	141	P22455
SWRPGPDNHSPITMY	CNTN4	616	Q8IWV2
IPPQWQVSHEFPMNF	CPNE3	351	O75131
GQFGVPQPWYFFIMP	ABCA3	476	Q99758
VQMPTPPPSGYNAWD	ANKIB1	286	Q9P2G1
YPPSNPYWTMQALLG	ATP10A	1256	O60312
SWMPHPPYVMQPTGA	RBMS3	301	Q6XE24
QYWPDPPDVMNHGGF	PTPN3	756	P26045
YSSGPMRPFAQHPWR	PARP9	831	Q8IXQ6
FVKNVPMNHGVYTWP	RSPH10B	136	P0C881
FVKNVPMNHGVYTWP	RSPH10B2	136	B2RC85
YRPPQPAWMFGDPHI	MUC4	4676	Q99102
FPSPMLYAGPTEVQW	PAPSS2	481	O95340
QKHYTPSENFIWGPP	OGFRL1	301	Q5TC84
AAFMYPPNPWKEISH	PRKD1	796	Q15139
PYQCPMTFGPRGHHW	IRF4	191	Q15306
PYFHGWLIGHPEMSP	HAND2	41	P61296
MTLYWSAGFHVPPHQ	FRMPD2	111	Q68DX3
SLMHFAITNPGWQPP	ATG9A	556	Q7Z3C6
WMPGSVPNHPKYDIS	GCNT3	341	O95395
THSPGMFSWFPILFP	PRMT5	571	O14744
GPYFPRGWNNFHTIM	CCR2	191	P41597
GATPNPYLWFNGPTM	FOXI1	56	Q12951
FWQPLYSHPPSMHTY	CLDN12	206	P56749
MTTNAGPLHPYWPQH	EBP	1	Q15125
SPHPYWLPNFMDVFT	PPP3CB	346	P16298
QWMVQPHFLGPSSYP	FOSL1	51	P15407
PNAYTMPPLWGSQIF	ODF3L2	161	Q3SX64
VSSVMQPYPLVWGHY	NTNG1	16	Q9Y2I2
GYNWSTTMGPLPPFA	PVR	276	P15151
SFRWSPPMFPNGVIH	USH2A	4846	O75445
SMWPEHYDPSQSPQL	UTRN	3171	P46939
PFAHKEGPNYQWMPF	SEMA3F	386	Q13275
HTFPQQRYWPMYHPS	SLC26A8	921	Q96RN1
FWAFPMNPSGLYITH	ST8SIA5	321	O15466
WHQTADFGYVPNPKM	SIAE	341	Q9HAT2
SQGMIGPPWHQSYHS	SHROOM3	181	Q8TF72
TMAQPPVHDYVPVSW	RHPN1	326	Q8TCX5
HEPLGLPMESYQPWA	HOXA13	266	P31271
RGHYFWMLSPFSPPS	PRG4	1166	Q92954
WNFLPPNLGRHYIAM	XPO4	236	Q9C0E2
SGQYWPSVYHAMPSP	WDFY2	56	Q96P53
GFPLPQVFLVPYAMW	SLC16A5	251	O15375
PMHQWVSYQGRVPYP	SEMA3B	361	Q13214
YKMQHWQPVYPPPSH	PRRC2B	641	Q5JSZ5
ENGYIHPVNLTWPFM	TCF21	141	O43680
NPNMYQSPPQWVDHT	TRIP4	381	Q15650
RWPMYPTSQPSNHPV	ZNF318	801	Q5VUA4
QPLSHPSPVWMNYSY	WNK4	1101	Q96J92
PPWMNSGPSESRPYH	SF1	366	Q15637
YTPPSIMPQKHWVYV	ZBTB22	286	O15209
RYLPWLYHPPSAMQQ	UNC79	2386	Q9P2D8
PMPNPVAYYLHHSPW	LMF1	246	Q96S06