Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctioncalcium ion binding

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 CASQ2 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.26e-047496410GO:0005509
GeneOntologyBiologicalProcesshomophilic cell adhesion via plasma membrane adhesion molecules

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

5.30e-09187639GO:0007156
GeneOntologyBiologicalProcesscell-cell adhesion via plasma-membrane adhesion molecules

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

4.39e-07313639GO:0098742
GeneOntologyCellularComponentnuclear body

TPP2 SRSF4 UBN1 ATRX RALBP1 ZC3H13 SLTM ZFHX3 TDG RAD54L2 THOC2 SNRPB2

1.62e-059036412GO:0016604
GeneOntologyCellularComponentcytoskeletal calyx

CYLC1 CYLC2

2.76e-053642GO:0033150
GeneOntologyCellularComponentperinuclear theca

CYLC1 CYLC2

9.17e-055642GO:0033011
DomainCadherin_tail

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

3.60e-1537639PF15974
DomainCadherin_CBD

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

3.60e-1537639IPR031904
DomainCadherin_2

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

8.60e-1365639PF08266
DomainCadherin_N

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

8.60e-1365639IPR013164
DomainCadherin_CS

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.02e-10109639IPR020894
DomainCADHERIN_1

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.42e-10113639PS00232
DomainCadherin

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.42e-10113639PF00028
DomainCADHERIN_2

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.53e-10114639PS50268
Domain-

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.53e-101146392.60.40.60
DomainCA

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.66e-10115639SM00112
DomainCadherin-like

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.79e-10116639IPR015919
DomainCadherin

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

2.09e-10118639IPR002126
DomainCylicin_N

CYLC1 CYLC2

1.12e-052632IPR029354
DomainCYLC

CYLC1 CYLC2

1.12e-052632IPR026189
DomainCylicin_N

CYLC1 CYLC2

1.12e-052632PF15241
DomainFam133

FAM133B FAM133A

1.12e-052632IPR026766
DomainSNF2_N

ATRX RAD54L2

5.20e-0332632IPR000330
DomainSNF2_N

ATRX RAD54L2

5.20e-0332632PF00176
DomainHelicase_C

ATRX DHX38 RAD54L2

5.66e-03107633PF00271
DomainHELICc

ATRX DHX38 RAD54L2

5.66e-03107633SM00490
DomainHelicase_C

ATRX DHX38 RAD54L2

5.81e-03108633IPR001650
DomainHELICASE_CTER

ATRX DHX38 RAD54L2

5.96e-03109633PS51194
DomainHELICASE_ATP_BIND_1

ATRX DHX38 RAD54L2

5.96e-03109633PS51192
DomainDEXDc

ATRX DHX38 RAD54L2

5.96e-03109633SM00487
DomainHelicase_ATP-bd

ATRX DHX38 RAD54L2

6.11e-03110633IPR014001
DomainP-loop_NTPase

RABL6 MYH3 SAMD9L ABCF1 ATRX DHX38 NAV1 RAD54L2

7.42e-03848638IPR027417
DomainBROMODOMAIN_2

BRD7 KMT2A

8.44e-0341632PS50014
DomainBROMO

BRD7 KMT2A

8.84e-0342632SM00297
DomainBromodomain

BRD7 KMT2A

8.84e-0342632IPR001487
Domain-

BRD7 KMT2A

8.84e-03426321.20.920.10
PathwayKEGG_SPLICEOSOME

SRSF4 DHX38 THOC2 SNRPB2

2.36e-04127344M2044
PathwayWP_15Q11Q13_COPY_NUMBER_VARIATION

SLF1 UBN1 OTUD7A

3.80e-0459343M48104
PathwayREACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA

GTF2F1 SRSF4 DHX38 THOC2 SNRPB2

5.43e-04283345M13087
PathwayREACTOME_RNA_POLYMERASE_II_TRANSCRIPTION_TERMINATION

SRSF4 DHX38 THOC2

5.53e-0467343M27694
Pubmed

Monoallelic yet combinatorial expression of variable exons of the protocadherin-alpha gene cluster in single neurons.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

6.67e-221564915640798
Pubmed

Alpha protocadherins and Pyk2 kinase regulate cortical neuron migration and cytoskeletal dynamics via Rac1 GTPase and WAVE complex in mice.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

3.23e-211764929911975
Pubmed

Genomic organization of the family of CNR cadherin genes in mice and humans.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

6.45e-211864910662547
Pubmed

CNR/Pcdhalpha family in subplate neurons, and developing cortical connectivity.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

6.45e-211864915570159
Pubmed

Developmental epigenetic modification regulates stochastic expression of clustered protocadherin genes, generating single neuron diversity.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.72e-192464924698270
Pubmed

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

9.03e-192864915347688
Pubmed

Diversity revealed by a novel family of cadherins expressed in neurons at a synaptic complex.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5

1.67e-17116479655502
Pubmed

Clustered gamma-protocadherins regulate cortical interneuron programmed cell death.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.13e-155764932633719
Pubmed

CTCF Governs the Identity and Migration of MGE-Derived Cortical Interneurons.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.33e-155864930377227
Pubmed

Comparative DNA sequence analysis of mouse and human protocadherin gene clusters.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

6.09e-156864911230163
Pubmed

A striking organization of a large family of human neural cadherin-like cell adhesion genes.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.05e-147264910380929
Pubmed

Cadherin superfamily genes: functions, genomic organization, and neurologic diversity.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.35e-147464910817752
Pubmed

The DNA sequence and comparative analysis of human chromosome 5.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.54e-147564915372022
Pubmed

Phylogenetic analysis of the cadherin superfamily allows identification of six major subfamilies besides several solitary members.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.97e-147764910835267
Pubmed

Proteins of the CNR family are multiple receptors for Reelin.

PCDHA9 PCDHA13 PCDHA11 PCDHA8 PCDHA6 PCDHA5

2.80e-141264610612399
Pubmed

Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

2.82e-148064910716726
Pubmed

A Genome-Wide CRISPR Screen Identifies Genes Critical for Resistance to FLT3 Inhibitor AC220.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.11e-1211964928625976
Pubmed

Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

8.76e-1119364922589738
Pubmed

Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening.

PCDHA9 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1 THOC2

9.49e-0932964917474147
Pubmed

Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes.

ATRX PCDHA12 PCDHA8 PCDHA6 PCDHA1

8.34e-085964523754746
Pubmed

Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes.

CEP350 MESD GTF2F1 UBN1 ZFP91 SLTM NAV1 KMT2A THOC2

2.73e-0664564925281560
Pubmed

Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription.

TPP2 ABCF1 SRSF4 TCOF1 ZC3H13 DHX38 SLTM KMT2A THOC2

3.01e-0665364922586326
Pubmed

Intron-less processed Pcdhalpha genes in the central nervous system.

PCDHA8 PCDHA6

3.33e-06264214697259
Pubmed

The protein complexity of the cytoskeleton of bovine and human sperm heads: the identification and characterization of cylicin II.

CYLC1 CYLC2

3.33e-0626427737358
Pubmed

Cylicins are a structural component of the sperm calyx being indispensable for male fertility in mice and human.

CYLC1 CYLC2

3.33e-06264238013430
Pubmed

Transcriptional regulation by Pol II(G) involving mediator and competitive interactions of Gdown1 and TFIIF with Pol II.

GTF2F1 POLR2M

3.33e-06264222244332
Pubmed

H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.

SLF1 SRSF4 UBN1 ATRX TCOF1 ZC3H13 DHX38 TADA2B SLTM KMT2A THOC2 SNRPB2

3.67e-061294641230804502
Pubmed

Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism.

MESD SLF1 UBN1 ATRX DHX38 TADA2B BRD7 SLTM PCDHA13 KMT2A ZDBF2 MAPK6

4.74e-061327641232694731
Pubmed

HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation.

CEP350 TCOF1 FAM133A RALBP1 TADA2B ZFP91 BRD7 KMT2A CAVIN1 LSM14B THOC2 SNRPB2

6.60e-061371641236244648
Pubmed

The Nse5/6-like SIMC1-SLF2 complex localizes SMC5/6 to viral replication centers.

SLF1 SRSF4 UBN1 ATRX ZC3H13 BRD7 SLTM KMT2A ZDBF2 THOC2

9.11e-06954641036373674
Pubmed

Identification of two novel PCDHA9 mutations associated with Hirschsprung's disease.

PCDHA9 PCDHA12

9.99e-06364229477871
Pubmed

Genome-wide CRISPR screens identify novel regulators of wild-type and mutant p53 stability.

GTF2F1 UBN1 ATRX TCOF1 DHX38 NAV1 ZDBF2 RAD54L2

1.23e-0558864838580884
Pubmed

Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer.

GTF2F1 UBN1 ATRX DHX38 ZFP91 SLTM KMT2A UBE2S CAVIN1 THOC2

1.54e-051014641032416067
Pubmed

The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei.

FAM133B GTF2F1 ABCF1 ATRX CRACDL DHX38 TADA2B ZFP91 BRD7 KMT2A ZFHX3 LSM14B

1.59e-051497641231527615
Pubmed

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.

FAM133B GTF2F1 ABCF1 SRSF4 TCOF1 ZC3H13 DHX38 SLTM LSM14B

1.64e-0580764922681889
Pubmed

Combinatorial targeting of a chromatin complex comprising Dot1L, menin and the tyrosine kinase BAZ1B reveals a new therapeutic vulnerability of endocrine therapy-resistant breast cancer.

SRSF4 TCOF1 ZC3H13 DHX38 ZFP91 SLTM KMT2A CAVIN1 THOC2

2.40e-0584764935850772
Pubmed

BAP1 regulation of the key adaptor protein NCoR1 is critical for γ-globin gene repression.

RABL6 FAM133B ABCF1 SRSF4 TCOF1 ZC3H13 DHX38 KMT2A UBE2S THOC2 SNRPB2

2.61e-051318641130463901
Pubmed

PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα.

TPP2 GTF2F1 ABCF1 ZFP91 KMT2A RAD54L2 LSM14B THOC2 SNRPB2 CCDC7

3.16e-051103641034189442
Pubmed

Common deletion variants causing protocadherin-α deficiency contribute to the complex genetics of BAV and left-sided congenital heart disease.

PCDHA9 PCDHA12

3.32e-05564234888534
Pubmed

NEDD4 controls the expression of GUCD1, a protein upregulated in proliferating liver cells.

PCDHA8 PCDHA6

4.98e-05664224743017
Pubmed

Juxtaposition of CNR protocadherins and reelin expression in the developing spinal cord.

PCDHA8 PCDHA6

4.98e-05664211312598
Pubmed

Comprehensive proteomic analysis of the human spliceosome.

GTF2F1 SRSF4 DHX38 SNRPB2

5.02e-0510964412226669
Pubmed

TBK1 phosphorylation activates LIR-dependent degradation of the inflammation repressor TNIP1.

FAM133B ABCF1 TCOF1 TADA2B ZFP91 SLTM CAVIN1 THOC2 SNRPB2

5.79e-0594964936574265
Pubmed

In-Depth In Vivo Crosslinking in Minutes by a Compact, Membrane-Permeable, and Alkynyl-Enrichable Crosslinker.

CYLC1 CYLC2 FAM133B MYH3 ATRX FAM133A KMT2A RAD54L2 MAPK6 KIAA2012 FER1L6

5.90e-051442641135575683
Pubmed

Large-scale characterization of HeLa cell nuclear phosphoproteins.

ABCF1 UBN1 ATRX TCOF1 ZC3H13 ZFP91 KMT2A THOC2

8.56e-0577464815302935
Pubmed

Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex, while BMI-1 is transiently co-localized with the centromeric region in interphase.

ZC3H13 DHX38 ZFP91

9.09e-054764315009096
Pubmed

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning.

CEP350 RABL6 GTF2F1 ABCF1 TCOF1 TMED8 POLR2M LSM14B SNRPB2

1.15e-04103864926673895
Pubmed

Molecular mechanisms governing Pcdh-gamma gene expression: evidence for a multiple promoter and cis-alternative splicing model.

PCDHA11 PCDHA5

1.19e-04964212154121
Pubmed

The histone acetyltransferase KAT6A is recruited to unmethylated CpG islands via a DNA binding winged helix domain.

CEP350 GTF2F1 ABCF1 ATRX MAPK6 LSM14B

1.19e-0441764636537216
Pubmed

TXLNA enhances TBK1 phosphorylation by suppressing PPM1B recruitment.

SRSF4 ATRX TCOF1 BRD7

1.25e-0413864437506885
Pubmed

The HECT type ubiquitin ligase NEDL2 is degraded by anaphase-promoting complex/cyclosome (APC/C)-Cdh1, and its tight regulation maintains the metaphase to anaphase transition.

FAM133B TADA2B KMT2A LSM14B SNRPB2

1.72e-0428164524163370
Pubmed

TOPORS-mediated RAD51 SUMOylation facilitates homologous recombination repair.

TDG RAD54L2

1.81e-041164235061896
Pubmed

Identifications of novel host cell factors that interact with the receptor-binding domain of the SARS-CoV-2 spike protein.

GTF2F1 ABCF1 ATRX DHX38 SLTM KMT2A RAD54L2

1.90e-0465064738777146
Pubmed

Acetylation of ELF5 suppresses breast cancer progression by promoting its degradation and targeting CCND1.

RABL6 ABCF1 SRSF4 DHX38 ZFP91 SLTM UBE2S

1.96e-0465364733742100
Pubmed

Functional genomic landscape of cancer-intrinsic evasion of killing by T cells.

CEP350 MESD TCOF1 TADA2B KMT2A THOC2

1.96e-0445764632968282
Pubmed

R2TP/Prefoldin-like component RUVBL1/RUVBL2 directly interacts with ZNHIT2 to regulate assembly of U5 small nuclear ribonucleoprotein.

SRSF4 TCOF1 DHX38 POLR2M SNRPB2

2.32e-0430064528561026
Pubmed

Nomenclature guidelines for X-linked mental retardation.

ATRX THOC2

2.57e-04136421605216
Pubmed

LncRNAs-directed PTEN enzymatic switch governs epithelial-mesenchymal transition.

SEMA4D ATRX UBE2S CCDC7

2.66e-0416864430631154
Pubmed

Human transcription factor protein interaction networks.

SLF1 UBN1 ATRX TADA2B ZFP91 BRD7 KMT2A ZFHX3 RAD54L2 LSM14B

2.66e-041429641035140242
Pubmed

Genetic interaction mapping in mammalian cells using CRISPR interference.

BRD7 KMT2A THOC2

2.86e-046964328481362
Pubmed

RNA-binding proteins with basic-acidic dipeptide (BAD) domains self-assemble and aggregate in Alzheimer's disease.

ABCF1 SRSF4 ZC3H13 SLTM LSM14B THOC2 SNRPB2

3.33e-0471364729802200
Pubmed

Characterizing ZC3H18, a Multi-domain Protein at the Interface of RNA Production and Destruction Decisions.

SRSF4 TCOF1 ZC3H13 SLTM LSM14B THOC2 SNRPB2

3.87e-0473164729298432
Pubmed

Combinatorial CRISPR screen identifies fitness effects of gene paralogues.

CHMP1B NAV1 KMT2A SNRPB2

3.92e-0418664433637726
Pubmed

Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains.

ABCF1 ATRX DHX38 KMT2A CAVIN1 THOC2

4.45e-0453364630554943
Pubmed

The protein network surrounding the human telomere repeat binding factors TRF1, TRF2, and POT1.

CYLC2 TCOF1 ZC3H13 SLTM

4.86e-0419764420811636
Pubmed

RSPO-LGR4 functions via IQGAP1 to potentiate Wnt signaling.

TCOF1 KMT2A LSM14B THOC2

5.34e-0420264424639526
Pubmed

The interactome of CLUH reveals its association to SPAG5 and its co-translational proximity to mitochondrial proteins.

SRSF4 TCOF1 ZC3H13 SLTM

5.44e-0420364435012549
Pubmed

Mammalian polycomb-mediated repression of Hox genes requires the essential spliceosomal protein Sf3b1.

KMT2A SNRPB2

5.59e-041964215741318
Pubmed

Recruitment of the human TREX complex to mRNA during splicing.

ZC3H13 THOC2

6.20e-042064215998806
Pubmed

Scanning the human proteome for calmodulin-binding proteins.

ATRX SLTM SNRPB2

6.64e-049264315840729
Pubmed

Identification of novel ARF binding proteins by two-hybrid screening.

RABL6 ZFP91

6.84e-042164216582619
Pubmed

Direct interaction between hnRNP-M and CDC5L/PLRG1 proteins affects alternative splice site choice.

SRSF4 UBN1 ATRX BRD7 UBE2S SNRPB2

7.05e-0458264620467437
Pubmed

Comprehensive Interactome Mapping of the DNA Repair Scaffold SLX4 Using Proximity Labeling and Affinity Purification.

GTF2F1 UBN1 ATRX RAD54L2

7.61e-0422264437071664
Pubmed

MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons.

ABCF1 SRSF4 TCOF1 ZC3H13 SLTM PCDHA1 THOC2 SNRPB2

8.09e-04108264838697112
Pubmed

The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis.

TPP2 ABCF1 CAVIN1 LSM14B SNRPB2

8.20e-0439664526687479
Pubmed

CHD3 and CHD4 form distinct NuRD complexes with different yet overlapping functionality.

ABCF1 TCOF1 ZC3H13 DHX38 KMT2A ZFHX3

8.62e-0460564628977666
Pubmed

The in vivo Interaction Landscape of Histones H3.1 and H3.3.

UBN1 ATRX TADA2B ZFP91 BRD7 KMT2A

8.84e-0460864636089195
Pubmed

NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency.

TCOF1 KMT2A ZFHX3

9.22e-0410364332744500
Pubmed

The cell proliferation antigen Ki-67 organises heterochromatin.

MYH3 SRSF4 TCOF1 ZFP91 BRD7

9.57e-0441064526949251
Pubmed

Direct binding of CoREST1 to SUMO-2/3 contributes to gene-specific repression by the LSD1/CoREST1/HDAC complex.

ATRX TDG RAD54L2

1.00e-0310664319394292
Pubmed

Interactome analyses revealed that the U1 snRNP machinery overlaps extensively with the RNAP II machinery and contains multiple ALS/SMA-causative proteins.

SRSF4 SLTM THOC2 SNRPB2

1.08e-0324464429884807
Pubmed

MxA interacts with and is modified by the SUMOylation machinery.

BRD7 TDG

1.14e-032764225447205
Pubmed

SETD1A Methyltransferase Is Physically and Functionally Linked to the DNA Damage Repair Protein RAD18.

FAM133B SRSF4 ZC3H13 KMT2A

1.20e-0325164431076518
Pubmed

Human Antiviral Protein IFIX Suppresses Viral Gene Expression during Herpes Simplex Virus 1 (HSV-1) Infection and Is Counteracted by Virus-induced Proteasomal Degradation.

ABCF1 SRSF4 ATRX TCOF1

1.20e-0325164428077445
Pubmed

Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice.

PCDHA13 PCDHA12

1.22e-032864233523829
Pubmed

Novel interactors and a role for supervillin in early cytokinesis.

ATRX KMT2A

1.22e-032864220309963
Pubmed

Proteomic characterization of chromosomal common fragile site (CFS)-associated proteins uncovers ATRX as a regulator of CFS stability.

ATRX TCOF1 SLTM CAVIN1 THOC2 SNRPB2

1.27e-0365264631180492
Pubmed

Reciprocal interaction between SIRT6 and APC/C regulates genomic stability.

ABCF1 ATRX TCOF1 DHX38 BRD7

1.31e-0344064534244565
Pubmed

Identification of proximal SUMO-dependent interactors using SUMO-ID.

UBN1 DHX38 SLTM RAD54L2 LSM14B

1.36e-0344464534795231
Pubmed

Multiplexed kinase interactome profiling quantifies cellular network activity and plasticity.

MYH3 ABCF1 ATRX RALBP1 KMT2A MAPK6 SLC4A4

1.39e-0391064736736316
Pubmed

Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions.

ARHGAP42 SRSF4 RALBP1 KMT2A CNKSR2 CAVIN1 SNRPB2

1.45e-0391664732203420
Pubmed

DYRK1A regulates the recruitment of 53BP1 to the sites of DNA damage in part through interaction with RNF169.

TCOF1 CAVIN1 RAD54L2

1.50e-0312264330773093
Pubmed

Dynamic Protein Interactions of the Polycomb Repressive Complex 2 during Differentiation of Pluripotent Cells.

ATRX BRD7 SLTM KMT2A LSM14B

1.73e-0346964527634302
Pubmed

ATG5 is required for B cell polarization and presentation of particulate antigens.

RABL6 FAM133B FAM133A RALBP1 ZC3H13 SLTM

1.83e-0370164630196744
InteractionPCDHA10 interactions

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3

2.03e-1522648int:PCDHA10
InteractionPCDHA3 interactions

PCDHA9 PCDHA11 PCDHA8 PCDHA6 PCDHA3 PCDHA1

1.01e-0934646int:PCDHA3
InteractionPCDHA11 interactions

PCDHA9 PCDHA12 PCDHA11 PCDHA3 PCDHA1

3.09e-0919645int:PCDHA11
InteractionPCDHA1 interactions

PCDHA11 PCDHA8 PCDHA3 PCDHA1

1.15e-089644int:PCDHA1
InteractionPCDHA8 interactions

PCDHA13 PCDHA12 PCDHA8 PCDHA6 PCDHA3 PCDHA1

2.07e-0855646int:PCDHA8
InteractionLONP2 interactions

PCDHA9 PCDHA12 PCDHA11 PCDHA8 PCDHA3 MAPK6

4.32e-0862646int:LONP2
InteractionFLT3 interactions

PCDHA9 PCDHA13 KMT2A PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

5.92e-083186410int:FLT3
InteractionPCDHGA10 interactions

PCDHA9 PCDHA12 PCDHA11 PCDHA8

3.46e-0719644int:PCDHGA10
InteractionPCDHA4 interactions

PCDHA9 PCDHA12 PCDHA11 PCDHA8 PCDHA1

1.31e-0660645int:PCDHA4
InteractionPCDHA6 interactions

PCDHA8 PCDHA6 PCDHA3

2.53e-069643int:PCDHA6
InteractionH2BC12 interactions

CEP350 CYLC1 MESD ABCF1 ATRX SLTM KMT2A MAPK6

7.92e-06322648int:H2BC12
InteractionPCDHA7 interactions

PCDHA9 PCDHA12 PCDHA8

1.08e-0514643int:PCDHA7
InteractionTERF2 interactions

CYLC2 TPP2 TCOF1 ZC3H13 TADA2B BRD7 SLTM CAVIN1

1.18e-05340648int:TERF2
InteractionPCDHAC2 interactions

PCDHA9 PCDHA11 PCDHA8 RAD54L2

1.25e-0545644int:PCDHAC2
InteractionLINC02910 interactions

RABL6 FAM133B ZC3H13 SLTM CAVIN1

1.28e-0595645int:LINC02910
InteractionMED4 interactions

CEP350 MESD GTF2F1 ZC3H13 TADA2B NAV1 POLR2M THOC2

8.60e-05450648int:MED4
InteractionH3C1 interactions

CYLC2 GTF2F1 UBN1 ATRX RALBP1 DHX38 TADA2B ZFP91 BRD7 KMT2A ZFHX3

1.14e-049016411int:H3C1
InteractionMLYCD interactions

PCDHA9 PCDHA12 PCDHA3

1.17e-0430643int:MLYCD
InteractionPSENEN interactions

GTF2F1 ZC3H13 DHX38 SLTM

1.28e-0481644int:PSENEN
InteractionDDX23 interactions

GTF2F1 SRSF4 TCOF1 ZC3H13 DHX38 SLTM THOC2 SNRPB2

1.34e-04480648int:DDX23
InteractionASF1A interactions

GTF2F1 UBN1 ATRX ZC3H13 KMT2A THOC2

1.38e-04249646int:ASF1A
InteractionDHX40 interactions

ZC3H13 DHX38 BRD7 SLTM ZDBF2 MAPK6

1.38e-04249646int:DHX40
InteractionPCDHA9 interactions

PCDHA9 PCDHA11 PCDHA3

1.42e-0432643int:PCDHA9
InteractionSNRNP40 interactions

GTF2F1 UBN1 TCOF1 ZC3H13 DHX38 KMT2A ZFHX3 ZDBF2 SNRPB2

1.74e-04637649int:SNRNP40
InteractionCENPA interactions

GTF2F1 ATRX ZC3H13 ZFP91 BRD7 KMT2A THOC2

1.88e-04377647int:CENPA
InteractionPCDHA13 interactions

PCDHA13 PCDHA8

2.06e-047642int:PCDHA13
InteractionUSP7 interactions

NUTM1 MYH3 SAMD9L SRSF4 UBN1 ATRX FAM133A BRD7 UBE2S CNKSR2 ZDBF2 THOC2 FER1L6

2.08e-0413136413int:USP7
InteractionMED20 interactions

GTF2F1 ZC3H13 SLTM POLR2M THOC2

2.75e-04181645int:MED20
Cytoband5q31

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

6.92e-141156495q31
CytobandEnsembl 112 genes in cytogenetic band chr5q31

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

3.65e-10298649chr5q31
Cytoband7q21.2

FAM133B SAMD9L

1.99e-04156427q21.2
CytobandXq21.1

CYLC1 ATRX

9.82e-0433642Xq21.1
CytobandEnsembl 112 genes in cytogenetic band chrXq21

CYLC1 ATRX FAM133A

1.07e-03143643chrXq21
GeneFamilyClustered protocadherins

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

5.96e-146447920
CoexpressionMIKKELSEN_MEF_HCP_WITH_H3_UNMETHYLATED

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.43e-08261649MM1277
CoexpressionMIKKELSEN_MEF_HCP_WITH_H3_UNMETHYLATED

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA6 PCDHA5 PCDHA3 PCDHA1

1.17e-07238648M2020
CoexpressionPUJANA_ATM_PCC_NETWORK

TPP2 MYH3 UBN1 TCOF1 RALBP1 PLCL2 ALPK3 PCDHA12 UBE2S CNKSR2 TDG THOC2 SNRPB2

2.67e-0513946413M9585
CoexpressionAtlasfacebase_RNAseq_e10.5_Emin_LatNas_2500_K3

CEP350 RABL6 TPP2 ABCF1 SLF1 ATRX TCOF1 ZC3H13 TADA2B BRD7 SLTM ZFHX3 ZDBF2 MAPK6 THOC2

2.93e-0612576315facebase_RNAseq_e10.5_Emin_LatNas_2500_K3
CoexpressionAtlasfacebase_RNAseq_e10.5_MandArch_2500_K1

ARHGAP42 RABL6 TPP2 ABCF1 SLF1 ATRX PLCL2 BRD7 SLTM ZFHX3 CNKSR2 ZDBF2 SLC4A4 THOC2

1.27e-0512416314facebase_RNAseq_e10.5_MandArch_2500_K1
CoexpressionAtlasfacebase_RNAseq_e10.5_Emin_LatNas_2500

CEP350 RABL6 TPP2 ABCF1 SLF1 ATRX TCOF1 ZC3H13 TADA2B BRD7 SLTM ZFHX3 ZDBF2 MAPK6 THOC2

1.77e-0514596315facebase_RNAseq_e10.5_Emin_LatNas_2500
CoexpressionAtlasDevelopingKidney_e15.5_anlage of loop of Henle_emap-31283_k-means-cluster#3_top-relative-expression-ranked_500

CEP350 ARHGAP42 ATRX ZFP91 UBE2S SLC4A4

2.90e-05201636gudmap_developingKidney_e15.5_500_k3
CoexpressionAtlasfacebase_RNAseq_e10.5_MandArch_2500

ARHGAP42 RABL6 TPP2 ABCF1 SLF1 ATRX PLCL2 BRD7 SLTM ZFHX3 CNKSR2 ZDBF2 SLC4A4 THOC2

8.08e-0514686314facebase_RNAseq_e10.5_MandArch_2500
CoexpressionAtlaskidney_adult_RenalCapsule_k-means-cluster#1_top-relative-expression-ranked_100

SAMD9L SLC4A4

8.61e-055632gudmap_kidney_adult_RenalCapsule_k1_100
CoexpressionAtlasFacebaseRNAseq_e10.5_Mandibular Arch_top-relative-expression-ranked_500_k-means-cluster#5

RABL6 SLTM NAV1 ZDBF2 THOC2

2.28e-04186635Facebase_RNAseq_e10.5_Mandibular Arch_500_K5
ToppCellmild|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class

CEP350 FAM133B SAMD9L ATRX BRD7 KMT2A

4.33e-0720064612f1685ce8f218433068e090c9d839cd5a1910bf
ToppCellE18.5-samps-Mesenchymal-Matrix_fibroblast-FB-1|E18.5-samps / Age Group, Lineage, Cell class and subclass

ALPK3 PCDHA11 PCDHA8 PCDHA3 PCDHA1

3.33e-06159645b4bc888e978b1b577721b891b0af6ba9a1607044
ToppCellH1299-infected-SARSCoV2|infected / Cell line, Condition and Strain

CEP350 ATRX ZC3H13 SLTM THOC2

9.46e-061976450fa3e4cf93e77d78b1f97b906c5b13ca741ae17e
ToppCell(11)_FOXN4+-(2)_GFP_FOXI1|(11)_FOXN4+ / shred by cell type by condition

CEP350 ATRX RALBP1 ZC3H13 SLTM

9.69e-0619864576d40b8c2f8399725b3a62ee2ae0896559cf91eb
ToppCell(03)_KRT6B+-(2)_GFP_FOXI1|(03)_KRT6B+ / shred by cell type by condition

CEP350 ATRX RALBP1 ZC3H13 BRD7

9.93e-06199645c425e7975f492ed5cfcca022248adb627e1d27d4
ToppCellVE|World / Condition, Cell_class and T cell subcluster

SEMA4D SAMD9L BRD7 KMT2A UBE2S

1.02e-052006458ae7cb81de3ffac5acdf3466d4b516d80cac95d3
DrugAzacitidine

MESD PCDHA9 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

2.02e-06415639ctd:D001374
Disease1,5 anhydroglucitol measurement

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

3.61e-1829619EFO_0008009
Diseasevisceral adipose tissue measurement, body mass index

PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 CNKSR2 PCDHA1

2.32e-15876110EFO_0004340, EFO_0004765
Diseaseneutrophil count, basophil count

PCDHA9 TADA2B PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1

3.34e-112246110EFO_0004833, EFO_0005090
DiseaseAbnormality of refraction

SEMA4D PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 ZFHX3 PCDHA3 CNKSR2 PCDHA1 SLC4A4

9.69e-106736113HP_0000539
Diseaseneuroticism measurement, cognitive function measurement

PCDHA9 PLCL2 NAV1 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 ZFHX3 PCDHA3 PCDHA1

1.64e-095666112EFO_0007660, EFO_0008354
Diseasepost-traumatic stress disorder symptom measurement

PCDHA8 PCDHA6 PCDHA5 PCDHA3 POLR2M PCDHA1

1.88e-0882616EFO_0008535
Diseasepost-traumatic stress disorder

PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1 SLC4A4

3.88e-06202616EFO_0001358
Diseasepulse pressure measurement

ARHGAP42 PCDHA9 NAV1 PCDHA13 PCDHA12 PCDHA11 PCDHA8 CASQ2 PCDHA6 PCDHA5 ZFHX3 PCDHA3 PCDHA1

4.29e-0613926113EFO_0005763
Diseasevital capacity

SEMA4D PCDHA9 PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 ZFHX3 PCDHA3 PCDHA1 KIAA2012

7.20e-0612366112EFO_0004312
Diseaseneutrophil count

FAM133B PCDHA9 TADA2B PCDHA13 PCDHA12 PCDHA11 PCDHA8 PCDHA6 PCDHA5 PCDHA3 PCDHA1 SLC4A4

2.20e-0513826112EFO_0004833
Diseasedepressive symptom measurement

PLCL2 KMT2A PCDHA6 PCDHA5 PCDHA3 CNKSR2 PCDHA1

2.77e-05426617EFO_0007006
DiseaseHypoplastic Left Heart Syndrome

PCDHA9 PCDHA13

4.19e-055612C0152101
Diseaseacute myeloid leukemia (implicated_via_orthology)

ZFP91 KMT2A

2.74e-0412612DOID:9119 (implicated_via_orthology)
Diseaserostral middle frontal gyrus volume measurement

ADGB MAPK6

3.76e-0414612EFO_0010328
Diseasehaptoglobin measurement

DHX38 ZFHX3

8.61e-0421612EFO_0004640
Diseasemalignant astrocytoma (is_marker_for)

ATRX BRD7

1.03e-0323612DOID:3069 (is_marker_for)
Diseaseunipolar depression, depressive symptom measurement

KMT2A CNKSR2

1.32e-0326612EFO_0003761, EFO_0007006

Protein segments in the cluster

PeptideGeneStartEntry
ESKKSGKSAKSKEKQ

TDG

81

Q13569
GKKDKKIKKTFFEEL

ABCF1

31

Q8NE71
DFKKAFSKEKMEKTK

CAVIN1

231

Q6NZI2
TVKKKDKGKSEDSEK

CCDC7

346

Q96M83
AFKSPSKENKKKDKD

BRD7

286

Q9NPI1
GKKRSKDGEKEKFKF

ADGB

371

Q8N7X0
RKGKEKSSEKEKTAK

ADGB

1321

Q8N7X0
FASSKEADEKKKKKG

APOBEC4

351

Q8WW27
KEESGAKKKKKDEES

ALPK3

511

Q96L96
ESELKQGKKDSKKGK

CYLC2

131

Q14093
DAKKDSKKGKKDAEK

CYLC2

156

Q14093
SKKGKKDAEKGKDSA

CYLC2

161

Q14093
DSKKGKKDSKKGKDS

CYLC2

216

Q14093
ESKDAKKDAKEIKKG

CYLC2

256

Q14093
ESKKDATKDAKKVAK

CYLC2

291

Q14093
ATKDAKKVAKKDTEK

CYLC2

296

Q14093
ESADSKKDAKKNAKK

CYLC2

311

Q14093
TKAEKKAAKKSYEED

RAD54L2

961

Q9Y4B4
SFSKKKEKDFKIKEK

RALBP1

116

Q15311
SDFITFGKKEETKKK

PCDHA9

911

Q9Y5H5
GKEEEEKAAKKKSKH

RABL6

661

Q3YEC7
SDFITFGKKEETKKK

PCDHA6

911

Q9UN73
SAKKCDKEEKAEKAK

CHMP1B

21

Q7LBR1
DFITFGKKEETKKKK

PCDHA11

911

Q9Y5I1
KKEGEKNKKFAVDFK

INPP1

36

P49441
SDFITFGKKEETKKK

PCDHA8

911

Q9Y5H6
SDFITFGKKEETKKK

PCDHA3

911

Q9Y5H8
SESKESVKKKKKSKD

FAM133A

151

Q8N9E0
FKKKLNFKDDKAEKG

LSM14B

271

Q9BX40
DKGKKKKEGDLKSRS

MESD

206

Q14696
EQSKEKSDKKGKSKC

MAPK6

481

Q16659
KKAEYKKSKDEKGGT

CYLC1

111

P35663
SKNDDKKKDAKKITF

CYLC1

391

P35663
AEAAIGKSKDSKAKK

KIAA2012

861

Q0VF49
KEKKAKSRKGSKEES

OTUD7A

561

Q8TE49
KSDFITFGKKEETKK

PCDHA5

896

Q9Y5H7
DSTGKKKSKFKTFKK

CRACDL

21

Q6NV74
SADRAKGKEKKKKEA

NUTM1

996

Q86Y26
SDFITFGKKEETKKK

PCDHA1

911

Q9Y5I3
SDFITFGKKEETKKK

PCDHA13

911

Q9Y5I0
DGEKKSKKIRDKTSK

ATRX

1041

P46100
DSLKKKKKSKDGTEK

FAM133B

156

Q5BKY9
LKKSKIEDAFSKEGK

CEP350

2266

Q5VT06
KSETKSGDKIKKKDS

KMT2A

201

Q03164
SGDKIKKKDSKSIEK

KMT2A

206

Q03164
KEKKSKTSEKKDSKE

KMT2A

1216

Q03164
AKKEAKLAKKLGFDE

CASQ2

96

O14958
DKGKKIFDSFAKLKA

POLR2M

46

P0CAP2
GTFADKEKKKEKKKA

SNRPB2

96

P08579
KSDFITFGKKEETKK

PCDHA12

901

Q9UN75
SIGSSKDADAKKKKK

NAV1

1196

Q8NEY1
SKDKDSKSSKGKDKA

FER1L6

426

Q2WGJ9
KKKKKKGSDDEAFED

GTF2F1

246

P35269
SKAGSSKKKKKEDTD

SRSF4

386

Q08170
AFLGKDKKEKEKALK

TADA2B

231

Q86TJ2
EKKKKAKKASTKDSE

TCOF1

1456

Q13428
AAKDGKKKFDKESEK

ARHGAP42

126

A6NI28
KDKSKFLEFKKSKEE

SAMD9L

671

Q8IVG5
KFKELHKSKDKAGTE

PLCL2

311

Q9UPR0
KKAESGDKEKDTLKK

SLTM

326

Q9NWH9
ATADADSGKKKVAKK

MYH3

626

P11055
DSGKKKVAKKKGSSF

MYH3

631

P11055
EDKKAKCAEKGKSKQ

SEMA4D

91

Q92854
DTGKKSKKKGDKSNS

CNKSR2

491

Q8WXI2
FKKEEKAKDEKFKTT

THOC2

1331

Q8NI27
KDKEKNKSKSSGKEK

THOC2

1526

Q8NI27
KNGSKDKEKDSEKEK

TPP2

1001

P29144
DDCETKKVSSKGKKK

ZDBF2

1861

Q9HCK1
DDGEDKKKSKVSSYK

DHX38

66

Q92620
KKEKFSGSSKDLKFV

SLF1

266

Q9BQI6
GERDKKLAAKKKTDK

UBE2S

201

Q16763
DDTYDKEKKSKKSKF

UBN1

206

Q9NPG3
KEKKSKKSKFSKAGF

UBN1

211

Q9NPG3
DEKKKKKKKGSLDSD

SLC4A4

1016

Q9Y6R1
GKKFEKKDSVVAHKA

ZFP91

436

Q96JP5
KSIEKKRKKSKGDSD

ZC3H13

1001

Q5T200
AKVKEFKSKLGKEKN

TMED8

166

Q6PL24
DSEKVKEKEKAHKGK

ZFHX3

3236

Q15911