Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyMolecularFunction	mRNA binding	NELFE RBM5 LUC7L RBM25 EIF3A SRSF3 SNRNP70 YTHDC1 CPSF6 SNRNP35	1.19e-08	694	27	10	GO:0003729
GeneOntologyMolecularFunction	protein-RNA adaptor activity	SRSF3 YTHDC1	4.77e-04	24	27	2	GO:0140517
GeneOntologyMolecularFunction	snRNA binding	SNRNP70 SNRNP35	2.68e-03	57	27	2	GO:0017069
GeneOntologyBiologicalProcess	mRNA processing	RBM5 FIP1L1 CDK11A LUC7L PRPF38B SCAF11 RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13 SCAF4 SNRNP35 DHX8	9.28e-21	551	27	17	GO:0006397
GeneOntologyBiologicalProcess	mRNA metabolic process	RBM5 FIP1L1 CDK11A LUC7L PRPF38B SCAF11 RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13 SCAF4 SNRNP35 DHX8	4.97e-17	917	27	17	GO:0016071
GeneOntologyBiologicalProcess	RNA splicing	RBM5 LUC7L PRPF38B PPIG SCAF11 RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A ZC3H13 SNRNP35 DHX8	3.21e-16	502	27	14	GO:0008380
GeneOntologyBiologicalProcess	RNA processing	RBM5 FIP1L1 CDK11A LUC7L PRPF38B PPIG SCAF11 RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13 SCAF4 SNRNP35 DHX8	7.31e-15	1500	27	18	GO:0006396
GeneOntologyBiologicalProcess	mRNA splicing, via spliceosome	RBM5 LUC7L SCAF11 RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 SNRNP35 DHX8	1.42e-11	358	27	10	GO:0000398
GeneOntologyBiologicalProcess	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	RBM5 LUC7L SCAF11 RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 SNRNP35 DHX8	1.42e-11	358	27	10	GO:0000377
GeneOntologyBiologicalProcess	RNA splicing, via transesterification reactions	RBM5 LUC7L SCAF11 RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 SNRNP35 DHX8	1.59e-11	362	27	10	GO:0000375
GeneOntologyBiologicalProcess	regulation of mRNA processing	RBM5 FIP1L1 CDK11A RBM25 SRSF3 SNRNP70 YTHDC1	1.06e-09	158	27	7	GO:0050684
GeneOntologyBiologicalProcess	protein-RNA complex organization	RBM5 LUC7L SCAF11 EIF3A DDX46 YTHDC1 DHX8	2.85e-08	254	27	7	GO:0071826
GeneOntologyBiologicalProcess	spliceosomal complex assembly	RBM5 LUC7L SCAF11 DDX46 YTHDC1	1.71e-07	99	27	5	GO:0000245
GeneOntologyBiologicalProcess	regulation of RNA splicing	RBM5 RBM25 SRSF3 SNRNP70 YTHDC1 AKAP17A	2.36e-07	207	27	6	GO:0043484
GeneOntologyBiologicalProcess	protein-RNA complex assembly	RBM5 LUC7L SCAF11 EIF3A DDX46 YTHDC1	6.20e-07	244	27	6	GO:0022618
GeneOntologyBiologicalProcess	regulation of mRNA splicing, via spliceosome	RBM5 RBM25 SRSF3 SNRNP70 YTHDC1	6.40e-07	129	27	5	GO:0048024
GeneOntologyBiologicalProcess	regulation of mRNA metabolic process	RBM5 FIP1L1 CDK11A RBM25 SRSF3 SNRNP70 YTHDC1	1.23e-06	443	27	7	GO:1903311
GeneOntologyBiologicalProcess	mRNA alternative polyadenylation	YTHDC1 CPSF6	2.47e-05	6	27	2	GO:0110104
GeneOntologyBiologicalProcess	mRNA 3'-end processing	FIP1L1 YTHDC1 CPSF6	2.92e-05	46	27	3	GO:0031124
GeneOntologyBiologicalProcess	ribonucleoprotein complex biogenesis	RBM5 LUC7L SCAF11 EIF3A DDX46 YTHDC1	4.46e-05	515	27	6	GO:0022613
GeneOntologyBiologicalProcess	regulation of alternative mRNA splicing, via spliceosome	RBM5 RBM25 YTHDC1	6.19e-05	59	27	3	GO:0000381
GeneOntologyBiologicalProcess	alternative mRNA splicing, via spliceosome	RBM5 RBM25 YTHDC1	1.48e-04	79	27	3	GO:0000380
GeneOntologyBiologicalProcess	RNA export from nucleus	SRSF3 YTHDC1 CPSF6	2.64e-04	96	27	3	GO:0006405
GeneOntologyBiologicalProcess	RNA 3'-end processing	FIP1L1 YTHDC1 CPSF6	2.80e-04	98	27	3	GO:0031123
GeneOntologyBiologicalProcess	nuclear transport	SRSF3 YTHDC1 UBR5 CPSF6	1.40e-03	378	27	4	GO:0051169
GeneOntologyBiologicalProcess	nucleocytoplasmic transport	SRSF3 YTHDC1 UBR5 CPSF6	1.40e-03	378	27	4	GO:0006913
GeneOntologyBiologicalProcess	RNA transport	SRSF3 YTHDC1 CPSF6	1.51e-03	175	27	3	GO:0050658
GeneOntologyBiologicalProcess	nucleic acid transport	SRSF3 YTHDC1 CPSF6	1.51e-03	175	27	3	GO:0050657
GeneOntologyBiologicalProcess	establishment of RNA localization	SRSF3 YTHDC1 CPSF6	1.59e-03	178	27	3	GO:0051236
GeneOntologyBiologicalProcess	nuclear export	SRSF3 YTHDC1 CPSF6	1.77e-03	185	27	3	GO:0051168
GeneOntologyBiologicalProcess	mRNA splice site recognition	LUC7L YTHDC1	2.10e-03	52	27	2	GO:0006376
GeneOntologyBiologicalProcess	RNA localization	SRSF3 YTHDC1 CPSF6	2.79e-03	217	27	3	GO:0006403
GeneOntologyBiologicalProcess	nucleobase-containing compound transport	SRSF3 YTHDC1 CPSF6	4.10e-03	249	27	3	GO:0015931
GeneOntologyBiologicalProcess	mRNA export from nucleus	SRSF3 YTHDC1	4.21e-03	74	27	2	GO:0006406
GeneOntologyCellularComponent	spliceosomal complex	RBM5 LUC7L PRPF38B DDX46 SNRNP70 AKAP17A SNRNP35 DHX8	2.06e-10	215	27	8	GO:0005681
GeneOntologyCellularComponent	nuclear body	NELFE PPIG SCAF11 RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13 DHX8	3.75e-10	903	27	12	GO:0016604
GeneOntologyCellularComponent	nuclear speck	PPIG RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13	2.09e-09	431	27	9	GO:0016607
GeneOntologyCellularComponent	nuclear protein-containing complex	NELFE RBM5 FIP1L1 LUC7L PRPF38B DDX46 SNRNP70 AKAP17A CPSF6 SNRNP35 DHX8	4.75e-07	1377	27	11	GO:0140513
GeneOntologyCellularComponent	ribonucleoprotein complex	RBM5 LUC7L PRPF38B EIF3A DDX46 SNRNP70 AKAP17A CPSF6 SNRNP35 DHX8	1.23e-06	1194	27	10	GO:1990904
GeneOntologyCellularComponent	U2-type spliceosomal complex	LUC7L DDX46 SNRNP70 DHX8	7.04e-06	97	27	4	GO:0005684
GeneOntologyCellularComponent	U2-type prespliceosome	LUC7L SNRNP70	2.43e-04	18	27	2	GO:0071004
GeneOntologyCellularComponent	prespliceosome	LUC7L SNRNP70	2.43e-04	18	27	2	GO:0071010
GeneOntologyCellularComponent	spliceosomal snRNP complex	LUC7L DDX46 SNRNP70	2.53e-04	96	27	3	GO:0097525
GeneOntologyCellularComponent	small nuclear ribonucleoprotein complex	LUC7L DDX46 SNRNP70	3.49e-04	107	27	3	GO:0030532
GeneOntologyCellularComponent	Sm-like protein family complex	LUC7L DDX46 SNRNP70	4.76e-04	119	27	3	GO:0120114
GeneOntologyCellularComponent	mRNA cleavage and polyadenylation specificity factor complex	FIP1L1 CPSF6	5.12e-04	26	27	2	GO:0005847
GeneOntologyCellularComponent	mRNA cleavage factor complex	FIP1L1 CPSF6	7.30e-04	31	27	2	GO:0005849
GeneOntologyCellularComponent	U1 snRNP	LUC7L SNRNP70	8.28e-04	33	27	2	GO:0005685
Domain	RRM	NELFE RBM5 RBM25 SRSF3 SNRNP70 AKAP17A CPSF6 SCAF4 SNRNP35	2.15e-11	230	27	9	PS50102
Domain	-	NELFE RBM5 RBM25 SRSF3 SNRNP70 AKAP17A CPSF6 SCAF4 SNRNP35	3.65e-11	244	27	9	3.30.70.330
Domain	Nucleotide-bd_a/b_plait	NELFE RBM5 RBM25 SRSF3 SNRNP70 AKAP17A CPSF6 SCAF4 SNRNP35	6.01e-11	258	27	9	IPR012677
Domain	RRM_1	NELFE RBM5 RBM25 SRSF3 SNRNP70 CPSF6 SCAF4 SNRNP35	3.83e-10	208	27	8	PF00076
Domain	RRM	NELFE RBM5 RBM25 SRSF3 SNRNP70 CPSF6 SCAF4 SNRNP35	5.36e-10	217	27	8	SM00360
Domain	RRM_dom	NELFE RBM5 RBM25 SRSF3 SNRNP70 CPSF6 SCAF4 SNRNP35	7.66e-10	227	27	8	IPR000504
Domain	DEAD	DDX46 DHX8	4.96e-03	73	27	2	PF00270
Domain	DEAD/DEAH_box_helicase_dom	DDX46 DHX8	4.96e-03	73	27	2	IPR011545
Domain	NA-bd_OB-fold	CCAR1 DHX8	6.37e-03	83	27	2	IPR012340
Domain	Helicase_C	DDX46 DHX8	1.04e-02	107	27	2	PF00271
Domain	HELICc	DDX46 DHX8	1.04e-02	107	27	2	SM00490
Domain	Helicase_C	DDX46 DHX8	1.06e-02	108	27	2	IPR001650
Domain	HELICASE_CTER	DDX46 DHX8	1.08e-02	109	27	2	PS51194
Domain	HELICASE_ATP_BIND_1	DDX46 DHX8	1.08e-02	109	27	2	PS51192
Domain	DEXDc	DDX46 DHX8	1.08e-02	109	27	2	SM00487
Domain	Helicase_ATP-bd	DDX46 DHX8	1.10e-02	110	27	2	IPR014001
Pathway	REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	CCAR1 RBM5 FIP1L1 PPIG RBM25 DDX46 SRSF3 SNRNP70 CPSF6 SNRNP35 DHX8	3.48e-13	283	24	11	M13087
Pathway	REACTOME_MRNA_SPLICING	CCAR1 RBM5 PPIG RBM25 DDX46 SRSF3 SNRNP70 SNRNP35 DHX8	3.57e-11	212	24	9	M14033
Pathway	REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	RBM5 FIP1L1 RBM25 DDX46 SRSF3 SNRNP70 CPSF6 SNRNP35 DHX8	3.88e-10	277	24	9	MM15414
Pathway	REACTOME_METABOLISM_OF_RNA	CCAR1 RBM5 FIP1L1 PPIG RBM25 DDX46 SRSF3 SNRNP70 CPSF6 CSNK1D SNRNP35 DHX8	4.71e-10	724	24	12	M16843
Pathway	REACTOME_METABOLISM_OF_RNA	RBM5 FIP1L1 RBM25 DDX46 SRSF3 SNRNP70 CPSF6 CSNK1D SNRNP35 DHX8	2.50e-08	612	24	10	MM15547
Pathway	REACTOME_MRNA_SPLICING	RBM5 RBM25 DDX46 SRSF3 SNRNP70 SNRNP35 DHX8	3.04e-08	201	24	7	MM15411
Pathway	KEGG_SPLICEOSOME	PRPF38B RBM25 DDX46 SRSF3 SNRNP70 DHX8	5.60e-08	127	24	6	M2044
Pathway	WP_MRNA_PROCESSING	NELFE RBM5 RBM25 SRSF3 SNRNP70 AKAP17A SNRNP35 DHX8	4.83e-07	451	24	8	MM15946
Pathway	WP_MRNA_PROCESSING	RBM5 SRSF3 SNRNP70 DHX8	5.63e-05	126	24	4	M39406
Pathway	REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION_TERMINATION	FIP1L1 SRSF3 CPSF6	1.54e-04	62	24	3	MM15426
Pathway	REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION_TERMINATION	FIP1L1 SRSF3 CPSF6	1.93e-04	67	24	3	M27694
Pathway	REACTOME_PROCESSING_OF_INTRONLESS_PRE_MRNAS	FIP1L1 CPSF6	5.18e-04	20	24	2	MM15469
Pathway	REACTOME_PROCESSING_OF_INTRONLESS_PRE_MRNAS	FIP1L1 CPSF6	5.18e-04	20	24	2	M497
Pathway	REACTOME_PROCESSING_OF_CAPPED_INTRONLESS_PRE_MRNA	FIP1L1 CPSF6	1.10e-03	29	24	2	M783
Pathway	REACTOME_PROCESSING_OF_CAPPED_INTRONLESS_PRE_MRNA	FIP1L1 CPSF6	1.10e-03	29	24	2	MM15444
Pubmed	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.	CCAR1 RBM5 FIP1L1 DIDO1 PPIG SCAF11 RBM25 EIF3A DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13 SCAF4 DHX8	9.43e-22	807	27	17	22681889
Pubmed	MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons.	CCAR1 RBM5 FIP1L1 DIDO1 LUC7L PRPF38B PPIG RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13 SCAF4 DHX8	1.33e-19	1082	27	17	38697112
Pubmed	RNA-binding proteins with basic-acidic dipeptide (BAD) domains self-assemble and aggregate in Alzheimer's disease.	NELFE CCAR1 FIP1L1 LUC7L PRPF38B PPIG RBM25 SRSF3 SNRNP70 YTHDC1 CPSF6 ZC3H13 SCAF4 SNRNP35 DHX8	5.68e-19	713	27	15	29802200
Pubmed	The protein interaction landscape of the human CMGC kinase group.	NELFE FIP1L1 CDK11A DIDO1 LUC7L PPIG RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 CPSF6 SNRNP35 DHX8	2.25e-17	695	27	14	23602568
Pubmed	SETD1A Methyltransferase Is Physically and Functionally Linked to the DNA Damage Repair Protein RAD18.	CCAR1 RBM5 FIP1L1 LUC7L PRPF38B PPIG SCAF11 AKAP17A CPSF6 ZC3H13 SCAF4	2.61e-17	251	27	11	31076518
Pubmed	HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation.	NELFE CCAR1 RBM5 FIP1L1 DIDO1 LUC7L PRPF38B PPIG SCAF11 RBM25 DDX46 SNRNP70 AKAP17A CPSF6 CSNK1D SCAF4	2.70e-16	1371	27	16	36244648
Pubmed	SR protein kinases promote splicing of nonconsensus introns.	FIP1L1 DIDO1 LUC7L PRPF38B PPIG EIF3A DDX46 SRSF3 SNRNP70 YTHDC1 ZC3H13	1.45e-15	361	27	11	26167880
Pubmed	H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.	CCAR1 RBM5 FIP1L1 DIDO1 LUC7L PPIG SCAF11 RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 ZC3H13 SCAF4 DHX8	3.82e-15	1294	27	15	30804502
Pubmed	Large-scale characterization of HeLa cell nuclear phosphoproteins.	NELFE CCAR1 FIP1L1 CDK11A DIDO1 PRPF38B PPIG SCAF11 RBM25 DDX46 YTHDC1 ZC3H13 SCAF4	4.48e-15	774	27	13	15302935
Pubmed	Combinatorial targeting of a chromatin complex comprising Dot1L, menin and the tyrosine kinase BAZ1B reveals a new therapeutic vulnerability of endocrine therapy-resistant breast cancer.	CCAR1 RBM5 FIP1L1 LUC7L SCAF11 RBM25 EIF3A DDX46 SRSF3 SNRNP70 YTHDC1 ZC3H13 DHX8	1.42e-14	847	27	13	35850772
Pubmed	Dynamic protein-protein interaction wiring of the human spliceosome.	CCAR1 RBM5 LUC7L PPIG RBM25 DDX46 SRSF3 SNRNP70 DHX8	2.14e-14	197	27	9	22365833
Pubmed	KSHV episome tethering sites on host chromosomes and regulation of latency-lytic switch by CHD4.	NELFE FIP1L1 DIDO1 SCAF11 RBM25 DDX46 SRSF3 DHX8	6.41e-14	130	27	8	35545047
Pubmed	The Nse5/6-like SIMC1-SLF2 complex localizes SMC5/6 to viral replication centers.	NELFE CCAR1 FIP1L1 CDK11A DIDO1 SCAF11 RBM25 DDX46 SRSF3 SNRNP70 CPSF6 ZC3H13 SCAF4	6.46e-14	954	27	13	36373674
Pubmed	BAP1 regulation of the key adaptor protein NCoR1 is critical for γ-globin gene repression.	CCAR1 DIDO1 LUC7L PRPF38B PPIG RBM25 EIF3A DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13	1.49e-13	1318	27	14	30463901
Pubmed	CHD3 and CHD4 form distinct NuRD complexes with different yet overlapping functionality.	CCAR1 RBM5 FIP1L1 LUC7L SCAF11 RBM25 EIF3A DDX46 SRSF3 SNRNP70 ZC3H13	4.09e-13	605	27	11	28977666
Pubmed	Large-scale mapping of human protein-protein interactions by mass spectrometry.	NELFE MAGI1 LUC7L PRPF38B PPIG RBM25 EIF3A SRSF3 SNRNP70 AKAP17A UBR5 CPSF6 CSNK1D	2.76e-12	1284	27	13	17353931
Pubmed	MYC multimers shield stalled replication forks from RNA polymerase.	NELFE CCAR1 RBM5 FIP1L1 DIDO1 SCAF11 RBM25 EIF3A SRSF3 SNRNP70 YTHDC1 CPSF6	3.07e-12	989	27	12	36424410
Pubmed	The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei.	CCAR1 RBM5 CDK11A DIDO1 PRPF38B SCAF11 EIF3A DDX46 YTHDC1 AKAP17A CPSF6 SCAF4 DHX8	1.89e-11	1497	27	13	31527615
Pubmed	Insights into the ubiquitin-proteasome system of human embryonic stem cells.	LUC7L PRPF38B PPIG RBM25 DDX46 SRSF3 AKAP17A UBR5	2.26e-11	269	27	8	29511261
Pubmed	Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription.	CCAR1 DIDO1 SCAF11 RBM25 DDX46 SRSF3 SNRNP70 UBR5 ZC3H13 DHX8	3.22e-11	653	27	10	22586326
Pubmed	Mapping the Ku Interactome Using Proximity-Dependent Biotin Identification in Human Cells.	NELFE CDK11A DIDO1 SCAF11 DDX46 SRSF3 CPSF6 DHX8	3.38e-11	283	27	8	30585729
Pubmed	Complementary proteomics strategies capture an ataxin-1 interactome in Neuro-2a cells.	CCAR1 CDK11A LUC7L PPIG RBM25 EIF3A DDX46 SRSF3 SNRNP70 CPSF6	3.84e-11	665	27	10	30457570
Pubmed	Charting the landscape of tandem BRCT domain-mediated protein interactions.	CCAR1 RBM5 FIP1L1 LUC7L SCAF11 RBM25 SNRNP70 UBR5 CPSF6 SCAF4	4.14e-11	670	27	10	22990118
Pubmed	Genetic and Proteomic Interrogation of Lower Confidence Candidate Genes Reveals Signaling Networks in β-Catenin-Active Cancers.	MAGI1 FIP1L1 LUC7L PRPF38B PPIG RBM25 SRSF3 SNRNP70 YTHDC1 CPSF6 CSNK1D DHX8	4.52e-11	1247	27	12	27684187
Pubmed	Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins.	NELFE RBM5 FIP1L1 LUC7L PRPF38B SRSF3 SNRNP70 YTHDC1 CPSF6 DHX8	8.69e-11	723	27	10	34133714
Pubmed	Characterizing ZC3H18, a Multi-domain Protein at the Interface of RNA Production and Destruction Decisions.	FIP1L1 LUC7L PRPF38B PPIG RBM25 EIF3A DDX46 SRSF3 SNRNP70 ZC3H13	9.67e-11	731	27	10	29298432
Pubmed	Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer.	NELFE CCAR1 FIP1L1 DIDO1 PRPF38B PPIG RBM25 EIF3A DDX46 YTHDC1 UBR5	1.04e-10	1014	27	11	32416067
Pubmed	Identifying biological pathways that underlie primordial short stature using network analysis.	FIP1L1 LUC7L RBM25 EIF3A DDX46 SRSF3 SNRNP70 UBR5 CPSF6 SCAF4 DHX8	1.16e-10	1024	27	11	24711643
Pubmed	The E3 ubiquitin ligase UBR5 interacts with the H/ACA ribonucleoprotein complex and regulates ribosomal RNA biogenesis in embryonic stem cells.	LUC7L PRPF38B RBM25 DDX46 AKAP17A UBR5	1.74e-10	104	27	6	31365120
Pubmed	Folate receptor α increases chemotherapy resistance through stabilizing MDM2 in cooperation with PHB2 that is overcome by MORAb-202 in gastric cancer.	LUC7L PRPF38B RBM25 DDX46 SRSF3 SNRNP70 CPSF6	1.85e-10	206	27	7	34185411
Pubmed	TBK1 phosphorylation activates LIR-dependent degradation of the inflammation repressor TNIP1.	FIP1L1 CDK11A LUC7L RBM25 EIF3A DDX46 YTHDC1 AKAP17A CPSF6 DHX8	1.21e-09	949	27	10	36574265
Pubmed	WW domains provide a platform for the assembly of multiprotein networks.	FIP1L1 CDK11A DDX46 SNRNP70 CPSF6 SCAF4	1.87e-09	154	27	6	16055720
Pubmed	Assembly of the U5 snRNP component PRPF8 is controlled by the HSP90/R2TP chaperones.	NELFE DIDO1 LUC7L SCAF11 EIF3A DDX46 SRSF3 SNRNP70 UBR5 CPSF6 DHX8	3.48e-09	1415	27	11	28515276
Pubmed	PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα.	NELFE CCAR1 RBM5 FIP1L1 DIDO1 PRPF38B SNRNP70 UBR5 CPSF6 SCAF4	5.10e-09	1103	27	10	34189442
Pubmed	A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain.	NELFE RBM5 RBM25 SNRNP70 AKAP17A SCAF4 SNRNP35	6.93e-09	347	27	7	16033648
Pubmed	Transcription factor Foxp3 and its protein partners form a complex regulatory network.	RBM5 CDK11A LUC7L PPIG SCAF11 SNRNP70 CSNK1D	1.08e-08	370	27	7	22922362
Pubmed	Sip1, a novel RS domain-containing protein essential for pre-mRNA splicing.	SCAF11 SRSF3 SNRNP70	1.46e-08	7	27	3	9447963
Pubmed	Characterizing WW domain interactions of tumor suppressor WWOX reveals its association with multiprotein networks.	FIP1L1 DIDO1 EIF3A SRSF3 CPSF6 SCAF4	1.59e-08	220	27	6	24550385
Pubmed	Targeting USP10 induces degradation of oncogenic ANLN in esophageal squamous cell carcinoma.	DIDO1 SCAF11 RBM25 EIF3A SRSF3 YTHDC1 CPSF6 CSNK1D ZC3H13 DHX8	1.77e-08	1257	27	10	36526897
Pubmed	Death by splicing: tumor suppressor RBM5 freezes splice-site pairing.	RBM5 SRSF3 SNRNP70	2.33e-08	8	27	3	18951082
Pubmed	The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells.	CCAR1 EIF3A SRSF3 SNRNP70 CPSF6 ZC3H13	2.59e-08	239	27	6	26641092
Pubmed	Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes.	CCAR1 RBM5 DDX46 SRSF3 SNRNP70	2.76e-08	115	27	5	17332742
Pubmed	Interactome analyses revealed that the U1 snRNP machinery overlaps extensively with the RNAP II machinery and contains multiple ALS/SMA-causative proteins.	CCAR1 SCAF11 RBM25 DDX46 SRSF3 SNRNP70	2.93e-08	244	27	6	29884807
Pubmed	A probability-based approach for high-throughput protein phosphorylation analysis and site localization.	NELFE FIP1L1 DIDO1 RBM25 SNRNP70 YTHDC1 ZC3H13	8.78e-08	503	27	7	16964243
Pubmed	A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Mechanisms of Redox Homeostasis and NF-κB Signaling.	FIP1L1 CDK11A LUC7L EIF3A YTHDC1 AKAP17A CPSF6 DHX8	9.97e-08	786	27	8	29128334
Pubmed	A bead-based approach for large-scale identification of in vitro kinase substrates.	FIP1L1 CDK11A SNRNP70 CPSF6 ZC3H13	1.58e-07	163	27	5	22113938
Pubmed	Menin and Menin-Associated Proteins Coregulate Cancer Energy Metabolism.	NELFE FIP1L1 DIDO1 DDX46 SRSF3 CPSF6	2.12e-07	341	27	6	32971831
Pubmed	Direct interaction between hnRNP-M and CDC5L/PLRG1 proteins affects alternative splice site choice.	FIP1L1 LUC7L DDX46 SRSF3 SNRNP70 CPSF6 DHX8	2.35e-07	582	27	7	20467437
Pubmed	Regulation of epidermal differentiation through KDF1-mediated deubiquitination of IKKα.	FIP1L1 CDK11A RBM25 AKAP17A CPSF6	2.73e-07	182	27	5	32239614
Pubmed	WWP2 ubiquitylates RNA polymerase II for DNA-PK-dependent transcription arrest and repair at DNA breaks.	NELFE FIP1L1 LUC7L EIF3A SRSF3 SNRNP70 CPSF6	3.41e-07	615	27	7	31048545
Pubmed	Systematically defining selective autophagy receptor-specific cargo using autophagosome content profiling.	NELFE CCAR1 DIDO1 PRPF38B EIF3A SNRNP70 AKAP17A UBR5 CSNK1D	3.46e-07	1297	27	9	33545068
Pubmed	N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective.	NELFE DIDO1 PRPF38B EIF3A DDX46 SRSF3 CPSF6 SCAF4	3.70e-07	934	27	8	33916271
Pubmed	The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis.	CCAR1 DIDO1 LUC7L PRPF38B SCAF11 UBR5	5.07e-07	396	27	6	26687479
Pubmed	Acetylation of ELF5 suppresses breast cancer progression by promoting its degradation and targeting CCND1.	NELFE FIP1L1 LUC7L RBM25 DDX46 CPSF6 SCAF4	5.10e-07	653	27	7	33742100
Pubmed	SMYD3 Impedes Small Cell Lung Cancer Sensitivity to Alkylation Damage through RNF113A Methylation-Phosphorylation Cross-talk.	LUC7L PPIG RBM25 DDX46 SRSF3 SNRNP70 UBR5	5.21e-07	655	27	7	35819319
Pubmed	Multiple Phosphorylations of SR Protein SRSF3 and Its Binding to m6A Reader YTHDC1 in Human Cells.	SRSF3 YTHDC1	5.80e-07	2	27	2	35563766
Pubmed	PTPN14 regulates Roquin2 stability by tyrosine dephosphorylation.	FIP1L1 LUC7L RBM25 SRSF3 SNRNP70 YTHDC1 CPSF6	6.56e-07	678	27	7	30209976
Pubmed	Human transcription factor protein interaction networks.	CCAR1 FIP1L1 CDK11A DIDO1 SCAF11 RBM25 EIF3A SNRNP70 SCAF4	7.80e-07	1429	27	9	35140242
Pubmed	Targeted and Interactome Proteomics Revealed the Role of PHD2 in Regulating BRD4 Proline Hydroxylation.	FIP1L1 RBM25 EIF3A SRSF3 SNRNP70 YTHDC1	9.49e-07	441	27	6	31239290
Pubmed	Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing.	CCAR1 RBM5 MAGI1 DYNC2I1 LUC7L PRPF38B SCAF11 SRSF3 CSNK1D	1.10e-06	1489	27	9	28611215
Pubmed	Comprehensive proteomic analysis of the human spliceosome.	CCAR1 RBM5 SRSF3 SNRNP70	1.52e-06	109	27	4	12226669
Pubmed	SND1 binds SARS-CoV-2 negative-sense RNA and promotes viral RNA synthesis through NSP9.	SCAF11 EIF3A SRSF3 SNRNP70 YTHDC1	1.53e-06	258	27	5	37794589
Pubmed	Poly(ADP-ribosyl)ation of BRD7 by PARP1 confers resistance to DNA-damaging chemotherapeutic agents.	CDK11A LUC7L RBM25 EIF3A DDX46 CPSF6	1.67e-06	486	27	6	30940648
Pubmed	Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition.	FIP1L1 CPSF6	1.74e-06	3	27	2	15937220
Pubmed	YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs.	SRSF3 YTHDC1	1.74e-06	3	27	2	28984244
Pubmed	Nuclear m(6)A Reader YTHDC1 Regulates mRNA Splicing.	SRSF3 YTHDC1	1.74e-06	3	27	2	26876937
Pubmed	Association of polyadenylation cleavage factor I with U1 snRNP.	SNRNP70 CPSF6	1.74e-06	3	27	2	14561889
Pubmed	Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing.	DIDO1 RBM25 EIF3A DDX46 CPSF6	1.94e-06	271	27	5	32433965
Pubmed	mTORC1 activity regulates post-translational modifications of glycine decarboxylase to modulate glycine metabolism and tumorigenesis.	CCAR1 RBM5 MAGI1 FIP1L1 EIF3A	2.05e-06	274	27	5	34244482
Pubmed	Nuclear actin interactome analysis links actin to KAT14 histone acetyl transferase and mRNA splicing.	NELFE RBM25 DDX46 SNRNP70 CPSF6 SCAF4	2.10e-06	506	27	6	30890647
Pubmed	R2TP/Prefoldin-like component RUVBL1/RUVBL2 directly interacts with ZNHIT2 to regulate assembly of U5 small nuclear ribonucleoprotein.	LUC7L PRPF38B DDX46 SNRNP70 DHX8	3.19e-06	300	27	5	28561026
Pubmed	Arginine methylation and ubiquitylation crosstalk controls DNA end-resection and homologous recombination repair.	RBM5 FIP1L1 SCAF11 EIF3A CPSF6 ZC3H13	3.43e-06	551	27	6	34728620
Pubmed	Nuclear m6A reader YTHDC1 regulates alternative polyadenylation and splicing during mouse oocyte development.	SRSF3 YTHDC1 CPSF6	3.46e-06	38	27	3	29799838
Pubmed	Molecular Mechanisms for CFIm-Mediated Regulation of mRNA Alternative Polyadenylation.	FIP1L1 CPSF6	3.48e-06	4	27	2	29276085
Pubmed	Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions.	CCAR1 RBM5 MAGI1 FIP1L1 RBM25 SNRNP70 CSNK1D	4.81e-06	916	27	7	32203420
Pubmed	TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions.	FIP1L1 SRSF3 SNRNP70 YTHDC1 CPSF6 ZC3H13 SCAF4	5.02e-06	922	27	7	27609421
Pubmed	Proteomic analysis of the cullin 4B interactome using proximity-dependent biotinylation in living cells.	RBM25 SRSF3 SNRNP70 CPSF6	5.84e-06	153	27	4	28225217
Pubmed	SARS-CoV-2 uses Spike glycoprotein to control the host's anaerobic metabolism by inhibiting LDHB.	CDK11A RBM25 EIF3A DDX46 SNRNP70 CPSF6	5.97e-06	607	27	6	39147351
Pubmed	SPATA2-Mediated Binding of CYLD to HOIP Enables CYLD Recruitment to Signaling Complexes.	FIP1L1 RBM25 SRSF3 YTHDC1 CPSF6	7.03e-06	353	27	5	27545878
Pubmed	Gain of Additional BIRC3 Protein Functions through 3'-UTR-Mediated Protein Complex Formation.	CCAR1 RBM5 RBM25 EIF3A SRSF3 SNRNP70 CPSF6 DHX8	8.61e-06	1425	27	8	30948266
Pubmed	The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus.	SRSF3 SNRNP70 YTHDC1 ZC3H13	8.65e-06	169	27	4	23084401
Pubmed	Phosphorylation of the eukaryotic initiation factor 3f by cyclin-dependent kinase 11 during apoptosis.	CDK11A EIF3A	8.69e-06	6	27	2	19245811
Pubmed	ZZW-115-dependent inhibition of NUPR1 nuclear translocation sensitizes cancer cells to genotoxic agents.	CDK11A PPIG RBM25 EIF3A DDX46 SNRNP70	9.62e-06	660	27	6	32780723
Pubmed	Deubiquitinating enzyme PSMD14 promotes tumor metastasis through stabilizing SNAIL in human esophageal squamous cell carcinoma.	RBM5 RBM25 SRSF3 SNRNP70 CPSF6	1.04e-05	383	27	5	29331416
Pubmed	CHK2 kinase promotes pre-mRNA splicing via phosphorylating CDK11(p110).	CDK11A RBM25 EIF3A	1.07e-05	55	27	3	23178491
Pubmed	A serine kinase regulates intracellular localization of splicing factors in the cell cycle.	SCAF11 SRSF3	1.22e-05	7	27	2	8208298
Pubmed	Distinct sequence motifs within the 68-kDa subunit of cleavage factor Im mediate RNA binding, protein-protein interactions, and subcellular localization.	SRSF3 CPSF6	1.22e-05	7	27	2	15169763
Pubmed	Therapeutic targeting of the USP2-E2F4 axis inhibits autophagic machinery essential for zinc homeostasis in cancer progression.	CCAR1 RBM25 EIF3A SNRNP70 YTHDC1	1.33e-05	403	27	5	35253629
Pubmed	ATG5 is required for B cell polarization and presentation of particulate antigens.	NELFE CCAR1 FIP1L1 EIF3A YTHDC1 ZC3H13	1.35e-05	701	27	6	30196744
Pubmed	Conserved expression of ultra-conserved noncoding RNA in mammalian nervous system.	CCAR1 PRPF38B SRSF3	1.39e-05	60	27	3	29055695
Pubmed	Spatial mapping of splicing factor complexes involved in exon and intron definition.	SRSF3 SNRNP70	1.62e-05	8	27	2	18559666
Pubmed	Identification of novel Smad2 and Smad3 associated proteins in response to TGF-beta1.	CDK11A CSNK1D DHX8	1.76e-05	65	27	3	18729074
Pubmed	The interactome of CLUH reveals its association to SPAG5 and its co-translational proximity to mitochondrial proteins.	PPIG SRSF3 AKAP17A ZC3H13	1.78e-05	203	27	4	35012549
Pubmed	Ex vivo Quantitative Proteomic Analysis of Serotonin Transporter Interactome: Network Impact of the SERT Ala56 Coding Variant.	MAGI1 DYNC2I1 SRSF3 UBR5 CSNK1D	1.82e-05	430	27	5	32581705
Pubmed	The E3 ubiquitin ligase HECTD1 contributes to cell proliferation through an effect on mitosis.	DIDO1 SCAF11 DDX46 SNRNP70 AKAP17A DHX8	2.12e-05	759	27	6	35915203
Pubmed	Mapping the Genetic Landscape of Human Cells.	FIP1L1 RBM25 DDX46 SNRNP70 YTHDC1	2.29e-05	451	27	5	30033366
Pubmed	TRIM33 drives prostate tumor growth by stabilizing androgen receptor from Skp2-mediated degradation.	CCAR1 DIDO1 RBM25 DDX46	2.44e-05	220	27	4	35785414
Pubmed	Minor spliceosome components are predominantly localized in the nucleus.	SNRNP70 SNRNP35	2.60e-05	10	27	2	18559850
Pubmed	Dynamic Protein Interactions of the Polycomb Repressive Complex 2 during Differentiation of Pluripotent Cells.	CCAR1 SCAF11 YTHDC1 CPSF6 CSNK1D	2.76e-05	469	27	5	27634302
Pubmed	A novel role for the peptidyl-prolyl cis-trans isomerase Cyclophilin A in DNA-repair following replication fork stalling via the MRE11-RAD50-NBS1 complex.	DIDO1 PRPF38B SNRNP70 SCAF4 DHX8	2.84e-05	472	27	5	38943005
Interaction	SRPK2 interactions	NELFE CCAR1 FIP1L1 DIDO1 LUC7L PRPF38B PPIG SCAF11 EIF3A DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13 SCAF4 SNRNP35 DHX8	4.00e-22	717	27	19	int:SRPK2
Interaction	JMJD6 interactions	DIDO1 LUC7L PRPF38B PPIG SCAF11 RBM25 DDX46 AKAP17A CPSF6 SCAF4 SNRNP35 DHX8	1.35e-17	205	27	12	int:JMJD6
Interaction	RNPS1 interactions	FIP1L1 CDK11A LUC7L PPIG RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A UBR5 CPSF6 SCAF4 DHX8	4.35e-17	425	27	14	int:RNPS1
Interaction	DDX23 interactions	RBM5 FIP1L1 CDK11A PPIG SCAF11 RBM25 DDX46 SNRNP70 YTHDC1 AKAP17A UBR5 CPSF6 ZC3H13 DHX8	2.37e-16	480	27	14	int:DDX23
Interaction	MEN1 interactions	NELFE RBM5 FIP1L1 DIDO1 LUC7L SCAF11 RBM25 EIF3A DDX46 SRSF3 SNRNP70 YTHDC1 UBR5 CD226 CPSF6 ZC3H13 DHX8	4.98e-16	1029	27	17	int:MEN1
Interaction	MECP2 interactions	CCAR1 RBM5 FIP1L1 DIDO1 LUC7L PRPF38B PPIG RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 CSNK1D ZC3H13 SCAF4 DHX8	7.52e-16	1287	27	18	int:MECP2
Interaction	SRSF7 interactions	NELFE DYNC2I1 CDK11A DIDO1 LUC7L PPIG RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 CPSF6 DHX8	2.09e-15	425	27	13	int:SRSF7
Interaction	SRSF1 interactions	NELFE DIDO1 LUC7L PPIG SCAF11 RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A UBR5 CPSF6 DHX8	2.56e-15	570	27	14	int:SRSF1
Interaction	SNRNP70 interactions	NELFE CCAR1 FIP1L1 LUC7L PRPF38B PPIG SCAF11 RBM25 SRSF3 SNRNP70 YTHDC1 CPSF6 ZC3H13 SCAF4 SNRNP35 DHX8	7.28e-15	984	27	16	int:SNRNP70
Interaction	SNRPB interactions	NELFE CCAR1 DIDO1 PPIG SCAF11 RBM25 DDX46 SNRNP70 YTHDC1 CPSF6 SCAF4 SNRNP35 DHX8	2.59e-14	517	27	13	int:SNRPB
Interaction	ZC3H18 interactions	FIP1L1 CDK11A LUC7L PRPF38B PPIG RBM25 EIF3A DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13 DHX8	3.60e-14	877	27	15	int:ZC3H18
Interaction	DHX8 interactions	RBM5 FIP1L1 CDK11A SCAF11 RBM25 DDX46 SNRNP70 AKAP17A CPSF6 ZC3H13 DHX8	5.20e-14	292	27	11	int:DHX8
Interaction	PRPF40A interactions	FIP1L1 CDK11A LUC7L PPIG RBM25 DDX46 SNRNP70 UBR5 CPSF6 CSNK1D SCAF4 DHX8	1.53e-13	446	27	12	int:PRPF40A
Interaction	SNRNP40 interactions	CCAR1 RBM5 SCAF11 RBM25 SRSF3 SNRNP70 YTHDC1 AKAP17A UBR5 CPSF6 ZC3H13 SCAF4 DHX8	3.72e-13	637	27	13	int:SNRNP40
Interaction	LINC02910 interactions	DYNC2I1 DIDO1 PRPF38B PPIG SCAF11 DDX46 YTHDC1 ZC3H13	3.72e-13	95	27	8	int:LINC02910
Interaction	IFI6 interactions	DIDO1 PRPF38B PPIG SCAF11 RBM25 DDX46 ZC3H13	5.64e-13	54	27	7	int:IFI6
Interaction	SRSF6 interactions	RBM5 LUC7L PRPF38B PPIG SCAF11 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13 DHX8	6.35e-13	503	27	12	int:SRSF6
Interaction	CPSF6 interactions	CCAR1 FIP1L1 DIDO1 PPIG SCAF11 RBM25 SNRNP70 YTHDC1 AKAP17A CPSF6 SCAF4 DHX8	1.07e-12	526	27	12	int:CPSF6
Interaction	SRSF11 interactions	LUC7L PRPF38B PPIG RBM25 DDX46 SRSF3 SNRNP70 YTHDC1 DHX8	3.58e-12	203	27	9	int:SRSF11
Interaction	SAP18 interactions	PRPF38B PPIG RBM25 SRSF3 SNRNP70 YTHDC1 UBR5 CPSF6 ZC3H13 DHX8	3.66e-12	305	27	10	int:SAP18
Interaction	NKAP interactions	CDK11A LUC7L PPIG RBM25 SNRNP70 AKAP17A CPSF6 DHX8	5.47e-12	132	27	8	int:NKAP
Interaction	RBM25 interactions	FIP1L1 CDK11A LUC7L RBM25 SRSF3 SNRNP70 UBR5 CPSF6 CSNK1D DHX8	6.45e-12	323	27	10	int:RBM25
Interaction	RAD18 interactions	CCAR1 RBM5 FIP1L1 LUC7L PRPF38B PPIG SCAF11 AKAP17A CPSF6 ZC3H13 SCAF4	6.80e-12	457	27	11	int:RAD18
Interaction	CLK3 interactions	LUC7L PRPF38B PPIG SRSF3 SNRNP70 YTHDC1 UBR5 ZC3H13 SNRNP35	7.39e-12	220	27	9	int:CLK3
Interaction	PRP4K interactions	FIP1L1 LUC7L RBM25 SRSF3 SNRNP70 YTHDC1 UBR5 CPSF6 CSNK1D DHX8	7.74e-12	329	27	10	int:PRP4K
Interaction	PSENEN interactions	DIDO1 PRPF38B PPIG SCAF11 DDX46 ZC3H13 SCAF4	1.08e-11	81	27	7	int:PSENEN
Interaction	SNRPA interactions	CCAR1 FIP1L1 DIDO1 LUC7L PPIG SCAF11 RBM25 SNRNP70 YTHDC1 SCAF4 DHX8	1.21e-11	482	27	11	int:SNRPA
Interaction	TOP1 interactions	CCAR1 FIP1L1 DIDO1 SCAF11 RBM25 EIF3A SNRNP70 YTHDC1 UBR5 CPSF6 SCAF4 DHX8	2.83e-11	696	27	12	int:TOP1
Interaction	CIT interactions	RBM5 MAGI1 FIP1L1 CDK11A DIDO1 LUC7L PRPF38B SCAF11 RBM25 EIF3A DDX46 SRSF3 SNRNP70 ZC3H13 DHX8	5.09e-11	1450	27	15	int:CIT
Interaction	ANKRD50 interactions	DIDO1 PRPF38B PPIG RBM25 DDX46 YTHDC1 ZC3H13	8.47e-11	108	27	7	int:ANKRD50
Interaction	SMC5 interactions	NELFE CCAR1 FIP1L1 CDK11A DIDO1 SCAF11 RBM25 DDX46 SRSF3 SNRNP70 CPSF6 ZC3H13 SCAF4	1.07e-10	1000	27	13	int:SMC5
Interaction	SRSF4 interactions	RBM5 PPIG SCAF11 SRSF3 SNRNP70 YTHDC1 AKAP17A UBR5 DHX8	1.18e-10	300	27	9	int:SRSF4
Interaction	PNN interactions	CDK11A LUC7L PPIG SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 DHX8	1.25e-10	302	27	9	int:PNN
Interaction	SNRPC interactions	FIP1L1 DIDO1 LUC7L SCAF11 RBM25 SNRNP70 YTHDC1 CPSF6 SCAF4 DHX8	1.35e-10	440	27	10	int:SNRPC
Interaction	DOT1L interactions	CCAR1 RBM5 FIP1L1 LUC7L SCAF11 RBM25 EIF3A DDX46 SRSF3 YTHDC1 ZC3H13 DHX8	1.57e-10	807	27	12	int:DOT1L
Interaction	IFI27L1 interactions	DIDO1 PRPF38B SCAF11 RBM25 DDX46 ZC3H13	2.49e-10	65	27	6	int:IFI27L1
Interaction	TRA2A interactions	LUC7L PPIG RBM25 SRSF3 SNRNP70 YTHDC1 UBR5 CPSF6 CSNK1D	2.75e-10	330	27	9	int:TRA2A
Interaction	SRPK1 interactions	NELFE LUC7L PPIG SCAF11 DDX46 SRSF3 SNRNP70 YTHDC1 CPSF6 DHX8	2.96e-10	477	27	10	int:SRPK1
Interaction	U2AF2 interactions	CCAR1 RBM5 LUC7L SCAF11 EIF3A DDX46 SRSF3 SNRNP70 UBR5 CPSF6 ZC3H13	2.99e-10	651	27	11	int:U2AF2
Interaction	NR2C2 interactions	CCAR1 DIDO1 LUC7L PRPF38B PPIG RBM25 EIF3A DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 ZC3H13	5.00e-10	1403	27	14	int:NR2C2
Interaction	CHD4 interactions	NELFE CCAR1 RBM5 FIP1L1 CDK11A SCAF11 RBM25 EIF3A DDX46 SRSF3 SNRNP70 DHX8	8.77e-10	938	27	12	int:CHD4
Interaction	SNRPF interactions	DIDO1 LUC7L PPIG SCAF11 SNRNP70 YTHDC1 CPSF6 SCAF4 SNRNP35	1.07e-09	385	27	9	int:SNRPF
Interaction	PRPF38A interactions	FIP1L1 PPIG RBM25 SRSF3 SNRNP70 CSNK1D DHX8	1.41e-09	161	27	7	int:PRPF38A
Interaction	CHD3 interactions	CCAR1 RBM5 FIP1L1 LUC7L SCAF11 RBM25 EIF3A DDX46 SRSF3 SNRNP70 ZC3H13	1.47e-09	757	27	11	int:CHD3
Interaction	MYCN interactions	FIP1L1 CDK11A DIDO1 LUC7L PRPF38B PPIG SCAF11 DDX46 SRSF3 SNRNP70 YTHDC1 CPSF6 ZC3H13	5.24e-09	1373	27	13	int:MYCN
Interaction	HDLBP interactions	NELFE RBM5 FIP1L1 DIDO1 LUC7L PRPF38B RBM25 SNRNP70 AKAP17A CPSF6 SCAF4	5.25e-09	855	27	11	int:HDLBP
Interaction	BARD1 interactions	CCAR1 LUC7L SCAF11 RBM25 SNRNP70 UBR5 CPSF6 SCAF4	6.80e-09	323	27	8	int:BARD1
Interaction	GAGE5 interactions	DIDO1 RBM25 DDX46 ZC3H13 SCAF4	7.26e-09	52	27	5	int:GAGE5
Interaction	UQCR11 interactions	DIDO1 PRPF38B SCAF11 DDX46 ZC3H13	8.01e-09	53	27	5	int:UQCR11
Interaction	OBSL1 interactions	FIP1L1 PRPF38B RBM25 EIF3A DDX46 SRSF3 SNRNP70 YTHDC1 CPSF6 SCAF4 DHX8	9.17e-09	902	27	11	int:OBSL1
Interaction	SSRP1 interactions	NELFE CCAR1 DIDO1 SCAF11 EIF3A SNRNP70 YTHDC1 UBR5 ZC3H13 SCAF4	9.64e-09	685	27	10	int:SSRP1
Interaction	ZC3H11A interactions	PPIG SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6 DHX8	1.06e-08	215	27	7	int:ZC3H11A
Interaction	RBBP6 interactions	LUC7L PPIG SRSF3 SNRNP70 YTHDC1 CPSF6 DHX8	1.09e-08	216	27	7	int:RBBP6
Interaction	LUC7L2 interactions	NELFE LUC7L SCAF11 DDX46 SNRNP70 UBR5 CPSF6 DHX8	1.36e-08	353	27	8	int:LUC7L2
Interaction	PPIG interactions	LUC7L PPIG EIF3A SRSF3 SNRNP70 CPSF6	1.48e-08	127	27	6	int:PPIG
Interaction	FOLR1 interactions	LUC7L PRPF38B RBM25 DDX46 SRSF3 SNRNP70 CPSF6	1.54e-08	227	27	7	int:FOLR1
Interaction	ANAPC15 interactions	DIDO1 PRPF38B PPIG SCAF11 DDX46 ZC3H13	1.55e-08	128	27	6	int:ANAPC15
Interaction	TNPO3 interactions	DIDO1 LUC7L SCAF11 SRSF3 CPSF6 SCAF4 DHX8	2.07e-08	237	27	7	int:TNPO3
Interaction	SIRT7 interactions	CCAR1 DIDO1 SCAF11 RBM25 DDX46 SRSF3 SNRNP70 UBR5 ZC3H13 DHX8	2.11e-08	744	27	10	int:SIRT7
Interaction	U2AF1 interactions	DIDO1 SCAF11 RBM25 SRSF3 SNRNP70 UBR5 SNRNP35	2.19e-08	239	27	7	int:U2AF1
Interaction	LUC7L interactions	LUC7L PRPF38B PPIG RBM25 SNRNP70 UBR5 SCAF4	2.39e-08	242	27	7	int:LUC7L
Interaction	DHX40 interactions	FIP1L1 CDK11A YTHDC1 UBR5 CPSF6 ZC3H13 DHX8	2.91e-08	249	27	7	int:DHX40
Interaction	UFL1 interactions	FIP1L1 CDK11A PRPF38B RBM25 EIF3A DDX46 SRSF3 SNRNP70 YTHDC1 AKAP17A CPSF6	3.65e-08	1031	27	11	int:UFL1
Interaction	TAF15 interactions	NELFE CCAR1 SCAF11 RBM25 DDX46 SRSF3 SNRNP70 CPSF6	4.18e-08	408	27	8	int:TAF15
Interaction	PPIL4 interactions	FIP1L1 RBM25 UBR5 CPSF6 CSNK1D DHX8	7.06e-08	165	27	6	int:PPIL4
Interaction	PHF5A interactions	RBM25 DDX46 SNRNP70 CPSF6 SNRNP35 DHX8	8.73e-08	171	27	6	int:PHF5A
Interaction	SUZ12 interactions	RBM5 FIP1L1 LUC7L SCAF11 SRSF3 SNRNP70 YTHDC1 CPSF6 ZC3H13	9.20e-08	644	27	9	int:SUZ12
Interaction	SRRM2 interactions	FIP1L1 LUC7L RBM25 SRSF3 SNRNP70 AKAP17A CPSF6 DHX8	1.09e-07	462	27	8	int:SRRM2
Interaction	EZH1 interactions	DIDO1 PRPF38B SCAF11 DDX46 ZC3H13	1.32e-07	92	27	5	int:EZH1
Interaction	SRRM4 interactions	LUC7L RBM25 SNRNP70 AKAP17A	1.64e-07	37	27	4	int:SRRM4
Interaction	CLK2 interactions	FIP1L1 LUC7L SRSF3 SNRNP70 YTHDC1 CPSF6	1.90e-07	195	27	6	int:CLK2
Interaction	HNRNPA1 interactions	CCAR1 RBM5 FIP1L1 SCAF11 SRSF3 SNRNP70 YTHDC1 CPSF6 ZC3H13 SCAF4	1.99e-07	945	27	10	int:HNRNPA1
Interaction	CEBPA interactions	NELFE CCAR1 RBM5 FIP1L1 DIDO1 PRPF38B SRSF3 SNRNP70 UBR5 CPSF6 SCAF4	2.49e-07	1245	27	11	int:CEBPA
Interaction	DDRGK1 interactions	RBM5 FIP1L1 LUC7L PRPF38B RBM25 DDX46 SRSF3 SNRNP70 AKAP17A CPSF6 DHX8	2.57e-07	1249	27	11	int:DDRGK1
Interaction	SNRPD1 interactions	NELFE LUC7L DDX46 SNRNP70 UBR5 CPSF6 DHX8	2.79e-07	347	27	7	int:SNRPD1
Interaction	SRRM1 interactions	LUC7L RBM25 SRSF3 SNRNP70 UBR5 CPSF6 DHX8	2.84e-07	348	27	7	int:SRRM1
Interaction	PRPF38B interactions	LUC7L PRPF38B EIF3A SNRNP70 UBR5	2.96e-07	108	27	5	int:PRPF38B
Interaction	CAAP1 interactions	SNRNP70 AKAP17A UBR5 CPSF6	3.04e-07	43	27	4	int:CAAP1
Interaction	FIP1L1 interactions	FIP1L1 RBM25 SNRNP70 CPSF6 CSNK1D DHX8	4.41e-07	225	27	6	int:FIP1L1
Interaction	PRPF8 interactions	RBM5 EIF3A DDX46 SRSF3 SNRNP70 UBR5 CPSF6 SNRNP35 DHX8	4.46e-07	776	27	9	int:PRPF8
Interaction	KIF23 interactions	CCAR1 PRPF38B PPIG RBM25 SRSF3 SNRNP70 AKAP17A UBR5 CSNK1D ZC3H13	4.47e-07	1031	27	10	int:KIF23
Interaction	SNRPD3 interactions	NELFE LUC7L DDX46 SNRNP70 YTHDC1 CPSF6 SNRNP35	5.14e-07	380	27	7	int:SNRPD3
Interaction	ZCCHC10 interactions	DYNC2I1 PPIG RBM25 AKAP17A CPSF6 DHX8	5.83e-07	236	27	6	int:ZCCHC10
Interaction	SCAF11 interactions	SCAF11 SRSF3 SNRNP70 CPSF6 DHX8	8.03e-07	132	27	5	int:SCAF11
Interaction	CFAP141 interactions	DIDO1 PRPF38B DDX46 SCAF4	8.31e-07	55	27	4	int:CFAP141
Interaction	MAPKAPK2 interactions	MAGI1 DIDO1 SCAF11 DDX46 DHX8	8.65e-07	134	27	5	int:MAPKAPK2
Interaction	SNRPD2 interactions	LUC7L DDX46 SNRNP70 UBR5 CPSF6 SNRNP35 DHX8	9.14e-07	414	27	7	int:SNRPD2
Interaction	SNRPB2 interactions	CCAR1 RBM25 DDX46 SNRNP70 CPSF6 DHX8	9.17e-07	255	27	6	int:SNRPB2
Interaction	SNIP1 interactions	FIP1L1 PPIG RBM25 SNRNP70 YTHDC1 CSNK1D DHX8	9.59e-07	417	27	7	int:SNIP1
Interaction	MEPCE interactions	CCAR1 FIP1L1 LUC7L RBM25 EIF3A SRSF3 SNRNP70 CPSF6 CSNK1D	1.04e-06	859	27	9	int:MEPCE
Interaction	CHERP interactions	CCAR1 LUC7L DDX46 SNRNP70 UBR5 DHX8	1.07e-06	262	27	6	int:CHERP
Interaction	CEBPB interactions	NELFE CCAR1 FIP1L1 LUC7L RBM25 EIF3A DDX46 SNRNP70 YTHDC1 SCAF4 DHX8	1.09e-06	1443	27	11	int:CEBPB
Interaction	RPS19 interactions	RBM5 FIP1L1 LUC7L SCAF11 RBM25 SNRNP70 AKAP17A CSNK1D	1.27e-06	639	27	8	int:RPS19
Interaction	SRSF10 interactions	LUC7L RBM25 SRSF3 SNRNP70 UBR5 CPSF6	1.31e-06	271	27	6	int:SRSF10
Interaction	SF3A2 interactions	CCAR1 RBM5 DDX46 SRSF3 SNRNP70 CPSF6	1.36e-06	273	27	6	int:SF3A2
Interaction	THRAP3 interactions	NELFE LUC7L PPIG SRSF3 SNRNP70 CPSF6 DHX8	1.44e-06	443	27	7	int:THRAP3
Interaction	MALL interactions	DIDO1 PRPF38B PPIG DDX46 ZC3H13	1.51e-06	150	27	5	int:MALL
Interaction	LEO1 interactions	FIP1L1 CDK11A RBM25 DDX46 YTHDC1 CPSF6	1.51e-06	278	27	6	int:LEO1
Interaction	TMEM14B interactions	DIDO1 PRPF38B PPIG DDX46 SRSF3 ZC3H13	1.55e-06	279	27	6	int:TMEM14B
Interaction	NCBP3 interactions	SRSF3 SNRNP70 AKAP17A CPSF6 ZC3H13	1.83e-06	156	27	5	int:NCBP3
GeneFamily	RNA binding motif containing	NELFE RBM5 RBM25 SRSF3 SNRNP70 CPSF6 SCAF4 SNRNP35	5.80e-11	213	21	8	725
Coexpression	GSE6269_HEALTHY_VS_STAPH_PNEUMO_INF_PBMC_UP	RBM5 DIDO1 LUC7L AKAP17A CSNK1D SNRNP35	3.28e-08	188	27	6	M5648
Coexpression	LAKE_ADULT_KIDNEY_C5_PROXIMAL_TUBULE_EPITHELIAL_CELLS_STRESS_INFLAM	CCAR1 DYNC2I1 LUC7L PRPF38B RBM25 YTHDC1 ZC3H13	1.66e-07	417	27	7	M39224
Coexpression	TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C	FIP1L1 DIDO1 LUC7L SNRNP70 CPSF6 ZC3H13 SCAF4	2.94e-07	454	27	7	M19927
Coexpression	GSE37534_PIOGLITAZONE_VS_ROSIGLITAZONE_TREATED_CD4_TCELL_PPARG1_FOXP3_TRANSDUCED_DN	RBM25 SRSF3 YTHDC1 UBR5 SNRNP35	6.71e-07	165	27	5	M8992
Coexpression	MENON_FETAL_KIDNEY_0_CAP_MESENCHYME_CELLS	RBM25 EIF3A SNRNP70 ZC3H13	2.15e-06	90	27	4	M39250
Coexpression	NAKAYA_B_CELL_FLUMIST_AGE_18_50YO_7DY_DN	RBM5 LUC7L PRPF38B SCAF11 CSNK1D SNRNP35	2.71e-06	399	27	6	M40939
Coexpression	HAMAI_APOPTOSIS_VIA_TRAIL_UP	CCAR1 DYNC2I1 PRPF38B PPIG SCAF11 EIF3A DDX46	3.42e-06	656	27	7	M18979
Coexpression	GARY_CD5_TARGETS_DN	CCAR1 PRPF38B PPIG RBM25 DDX46 SRSF3	4.75e-06	440	27	6	M13893
Coexpression	MARTORIATI_MDM4_TARGETS_FETAL_LIVER_DN	CCAR1 RBM5 PRPF38B PPIG RBM25 CSNK1D	1.22e-05	519	27	6	M3395
Coexpression	MARTORIATI_MDM4_TARGETS_FETAL_LIVER_DN	CCAR1 RBM5 PRPF38B PPIG RBM25 CSNK1D	1.57e-05	543	27	6	MM997
Coexpression	RICKMAN_METASTASIS_UP	FIP1L1 PPIG RBM25 YTHDC1 DHX8	2.62e-05	350	27	5	M9752
Coexpression	HAHTOLA_MYCOSIS_FUNGOIDES_SKIN_UP	RBM25 EIF3A SRSF3 SNRNP70	3.12e-05	177	27	4	M6564
Coexpression	GSE6269_FLU_VS_STAPH_AUREUS_INF_PBMC_UP	RBM5 DIDO1 SNRNP70 CSNK1D	3.71e-05	185	27	4	M5643
Coexpression	FAN_OVARY_CL15_SMALL_ANTRAL_FOLLICLE_GRANULOSA_CELL	LUC7L PRPF38B RBM25 SRSF3 YTHDC1 CPSF6	4.10e-05	644	27	6	M41717
Coexpression	GSE29618_BCELL_VS_MDC_UP	RBM5 LUC7L SNRNP70 YTHDC1	4.47e-05	194	27	4	M4943
Coexpression	TABULA_MURIS_SENIS_KIDNEY_KIDNEY_COLLECTING_DUCT_PRINCIPAL_CELL_AGEING	PRPF38B SCAF11 RBM25 SRSF3 ZC3H13	4.60e-05	394	27	5	MM3724
Coexpression	GSE14000_TRANSLATED_RNA_VS_MRNA_4H_LPS_DC_UP	CCAR1 CDK11A PPIG DDX46	4.93e-05	199	27	4	M3328
Coexpression	GSE6681_DELETED_FOXP3_VS_WT_TREG_DN	NELFE EIF3A ZC3H13 SCAF4	5.03e-05	200	27	4	M6779
Coexpression	GSE27786_CD4_TCELL_VS_ERYTHTROBLAST_UP	PPIG UBR5 CSNK1D ZC3H13	5.03e-05	200	27	4	M4827
Coexpression	DIAZ_CHRONIC_MYELOGENOUS_LEUKEMIA_UP	RBM5 SCAF11 EIF3A SRSF3 YTHDC1 AKAP17A CPSF6 CSNK1D	5.76e-05	1399	27	8	M535
Coexpression	TABULA_MURIS_SENIS_BLADDER_ENDOTHELIAL_CELL_AGEING	CDK11A PPIG SRSF3 YTHDC1 CSNK1D	6.09e-05	418	27	5	MM3681
Coexpression	NAKAYA_PBMC_FLUARIX_FLUVIRIN_AGE_18_50YO_3DY_DN	CDK11A SCAF11 RBM25 YTHDC1 AKAP17A	7.11e-05	432	27	5	M41149
Coexpression	NAKAYA_PBMC_FLUARIX_FLUVIRIN_AGE_18_50YO_CORRELATED_WITH_HAI_28DY_RESPONSE_AT_7DY_NEGATIVE	CCAR1 RBM25 SRSF3 YTHDC1 SCAF4	1.10e-04	474	27	5	M40991
Coexpression	HOUNKPE_HOUSEKEEPING_GENES	RBM25 EIF3A SRSF3 SNRNP70 YTHDC1 CSNK1D SNRNP35	1.12e-04	1129	27	7	M42508
Coexpression	TABULA_MURIS_SENIS_SPLEEN_PROERYTHROBLAST_AGEING	PRPF38B PPIG RBM25 EIF3A DDX46 SRSF3 SNRNP70	1.22e-04	1144	27	7	MM3843
Coexpression	HOUNKPE_HOUSEKEEPING_GENES	RBM25 EIF3A SRSF3 SNRNP70 YTHDC1 CSNK1D SNRNP35	1.32e-04	1158	27	7	MM1338
Coexpression	PUJANA_ATM_PCC_NETWORK	DIDO1 PPIG SCAF11 DDX46 SRSF3 YTHDC1 AKAP17A	4.11e-04	1394	27	7	M9585
Coexpression	THAKAR_PBMC_INACTIVATED_INFLUENZA_AGE_21_30YO_RESPONDERS_7DY_DN	DIDO1 LUC7L SNRNP70 AKAP17A CSNK1D	4.23e-04	634	27	5	M40866
Coexpression	WANG_LMO4_TARGETS_DN	RBM25 EIF3A DDX46 UBR5	4.83e-04	361	27	4	M12674
Coexpression	NAKAYA_PBMC_FLUARIX_FLUVIRIN_AGE_18_50YO_CORRELATED_WITH_HAI_28DY_RESPONSE_AT_3DY_NEGATIVE	PPIG RBM25 SRSF3 YTHDC1	4.94e-04	363	27	4	M41103
Coexpression	BILANGES_SERUM_SENSITIVE_VIA_TSC2	EIF3A DDX46	4.97e-04	32	27	2	MM1307
Coexpression	BILANGES_SERUM_SENSITIVE_VIA_TSC2	EIF3A DDX46	4.97e-04	32	27	2	M2334
Coexpression	NAKAYA_PBMC_FLUMIST_AGE_18_50YO_3DY_DN	CDK11A EIF3A YTHDC1 CSNK1D DHX8	5.82e-04	680	27	5	M41089
Coexpression	ERWIN_COHEN_BLOOD_LIVE_VACCINE_TC_83_AGE_23_48YO_VACCINATED_VS_CONTROL_14DY_UP	CCAR1 PPIG RBM25 SRSF3 CPSF6	6.10e-04	687	27	5	M41022
Coexpression	TABULA_MURIS_SENIS_THYMUS_THYMOCYTE_AGEING	NELFE PPIG RBM25 SRSF3 SNRNP70	6.68e-04	701	27	5	MM3849
Coexpression	GSE6269_FLU_VS_STREP_PNEUMO_INF_PBMC_UP	PPIG SCAF11 RBM25	6.99e-04	170	27	3	M5657
Coexpression	NAKAYA_MYELOID_DENDRITIC_CELL_FLUARIX_FLUVIRIN_AGE_18_50YO_7DY_UP	FIP1L1 RBM25 CD226 SCAF4	7.03e-04	399	27	4	M41172
Coexpression	ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_UP	CCAR1 RBM5 EIF3A	7.36e-04	173	27	3	M2480
Coexpression	EPPERT_LSC_R	PPIG UBR5	8.58e-04	42	27	2	M19230
Coexpression	GSE38696_LIGHT_ZONE_VS_DARK_ZONE_BCELL_UP	DIDO1 UBR5 DHX8	8.79e-04	184	27	3	M9005
Coexpression	PUJANA_BRCA2_PCC_NETWORK	DDX46 SRSF3 UBR5 CPSF6	8.98e-04	426	27	4	M9516
Coexpression	SHEN_SMARCA2_TARGETS_UP	PRPF38B DDX46 YTHDC1 ZC3H13	9.22e-04	429	27	4	M29
Coexpression	TABULA_MURIS_SENIS_LUNG_CLASSICAL_MONOCYTE_AGEING	RBM25 EIF3A DDX46 SRSF3	1.02e-03	441	27	4	MM3765
Coexpression	GSE29618_BCELL_VS_MONOCYTE_UP	LUC7L PPIG SNRNP70	1.04e-03	195	27	3	M4936
Coexpression	GSE22886_IL2_VS_IL15_STIM_NKCELL_DN	NELFE CPSF6 SNRNP35	1.04e-03	195	27	3	M4516
Coexpression	GSE29617_CTRL_VS_DAY3_TIV_FLU_VACCINE_PBMC_2008_UP	RBM25 YTHDC1 AKAP17A	1.06e-03	196	27	3	M4928
Coexpression	MELLMAN_TUT1_TARGETS_DN	RBM25 CPSF6	1.07e-03	47	27	2	M16335
Coexpression	GSE18281_MEDULLARY_THYMOCYTE_VS_WHOLE_MEDULLA_THYMUS_DN	CCAR1 RBM25 SNRNP35	1.09e-03	198	27	3	M7249
Coexpression	GSE3982_MAC_VS_BASOPHIL_DN	RBM5 SRSF3 AKAP17A	1.09e-03	198	27	3	M5498
Coexpression	GSE36826_WT_VS_IL1R_KO_SKIN_DN	DIDO1 AKAP17A SCAF4	1.09e-03	198	27	3	M9530
Coexpression	GSE19888_CTRL_VS_A3R_ACTIVATION_MAST_CELL_UP	RBM5 LUC7L RBM25	1.10e-03	199	27	3	M7325
Coexpression	GSE22025_PROGESTERONE_VS_TGFB1_AND_PROGESTERONE_TREATED_CD4_TCELL_UP	RBM25 CSNK1D ZC3H13	1.10e-03	199	27	3	M8381
Coexpression	GSE28726_ACT_CD4_TCELL_VS_ACT_NKTCELL_DN	EIF3A SNRNP70 AKAP17A	1.10e-03	199	27	3	M8313
Coexpression	GSE21546_ELK1_KO_VS_SAP1A_KO_AND_ELK1_KO_ANTI_CD3_STIM_DP_THYMOCYTES_UP	RBM5 DYNC2I1 UBR5	1.10e-03	199	27	3	M7530
Coexpression	GSE15767_MED_VS_SCS_MAC_LN_DN	DDX46 UBR5 ZC3H13	1.10e-03	199	27	3	M3585
Coexpression	GSE25123_IL4_VS_IL4_AND_ROSIGLITAZONE_STIM_MACROPHAGE_DAY10_DN	PRPF38B YTHDC1 CSNK1D	1.10e-03	199	27	3	M7965
Coexpression	GSE14308_TH1_VS_TH17_DN	RBM5 YTHDC1 UBR5	1.12e-03	200	27	3	M3374
Coexpression	GSE15330_WT_VS_IKAROS_KO_LYMPHOID_MULTIPOTENT_PROGENITOR_DN	RBM25 EIF3A SNRNP70	1.12e-03	200	27	3	M7058
Coexpression	GSE27786_BCELL_VS_NEUTROPHIL_UP	CCAR1 LUC7L EIF3A	1.12e-03	200	27	3	M4813
Coexpression	GSE17721_POLYIC_VS_GARDIQUIMOD_8H_BMDC_DN	NELFE LUC7L EIF3A	1.12e-03	200	27	3	M4027
Coexpression	GSE37301_COMMON_LYMPHOID_PROGENITOR_VS_CD4_TCELL_UP	NELFE DYNC2I1 AKAP17A	1.12e-03	200	27	3	M8868
Coexpression	GSE29949_CD8_NEG_DC_SPLEEN_VS_DC_BRAIN_DN	DDX46 CD226 CSNK1D	1.12e-03	200	27	3	M8403
Coexpression	GSE21063_WT_VS_NFATC1_KO_8H_ANTI_IGM_STIM_BCELL_DN	RBM5 DIDO1 SCAF4	1.12e-03	200	27	3	M8278
Coexpression	GSE21063_3H_VS_16H_ANTI_IGM_STIM_BCELL_UP	SCAF11 ZC3H13 SCAF4	1.12e-03	200	27	3	M8264
Coexpression	GSE20715_0H_VS_48H_OZONE_TLR4_KO_LUNG_DN	DIDO1 PRPF38B EIF3A	1.12e-03	200	27	3	M4386
Coexpression	GSE14350_TREG_VS_TEFF_IN_IL2RB_KO_UP	UBR5 ZC3H13 DHX8	1.12e-03	200	27	3	M3419
Coexpression	GSE1460_DP_VS_CD4_THYMOCYTE_UP	SRSF3 SNRNP70 DHX8	1.12e-03	200	27	3	M3452
Coexpression	DESCARTES_ORGANOGENESIS_STROMAL_CELLS	SRSF3 YTHDC1 CSNK1D	1.13e-03	201	27	3	MM3652
Coexpression	BUSSLINGER_GASTRIC_ISTHMUS_CELLS	PRPF38B RBM25 EIF3A SRSF3	1.17e-03	458	27	4	M40010
Coexpression	NAKAYA_B_CELL_FLUMIST_AGE_18_50YO_7DY_UP	AKAP17A CD226 CPSF6 SCAF4	1.34e-03	475	27	4	M40979
Coexpression	ENK_UV_RESPONSE_KERATINOCYTE_DN	PPIG SCAF11 YTHDC1 UBR5	1.41e-03	481	27	4	M3898
Coexpression	LAKE_ADULT_KIDNEY_C3_PROXIMAL_TUBULE_EPITHELIAL_CELLS_S1_S2	DYNC2I1 RBM25 ZC3H13	1.49e-03	221	27	3	M39222
Coexpression	CHEN_HOXA5_TARGETS_9HR_UP	RBM5 PRPF38B PPIG	1.53e-03	223	27	3	M17621
Coexpression	TABULA_MURIS_SENIS_SPLEEN_GRANULOCYTE_AGEING	CDK11A RBM25 EIF3A	1.55e-03	224	27	3	MM3836
Coexpression	JOHNSTONE_PARVB_TARGETS_3_DN	CCAR1 SRSF3 SNRNP70 YTHDC1 CPSF6	1.81e-03	877	27	5	M2241
Coexpression	MILI_PSEUDOPODIA_HAPTOTAXIS_UP	RBM25 SRSF3 YTHDC1 CPSF6	1.91e-03	523	27	4	M12707
Coexpression	MILI_PSEUDOPODIA_HAPTOTAXIS_UP	RBM25 SRSF3 YTHDC1 CPSF6	2.06e-03	534	27	4	MM1054
Coexpression	THAKAR_PBMC_INACTIVATED_INFLUENZA_AGE_21_30YO_RESPONDERS_28DY_DN	DIDO1 LUC7L SNRNP70 AKAP17A CSNK1D	2.08e-03	905	27	5	M40865
CoexpressionAtlas	facebase_RNAseq_e10.5_Emin_LatNas_2500_K3	CCAR1 DYNC2I1 FIP1L1 PRPF38B PPIG SCAF11 RBM25 EIF3A DDX46 CPSF6 ZC3H13 SNRNP35 DHX8	5.20e-10	1257	26	13	facebase_RNAseq_e10.5_Emin_LatNas_2500_K3
CoexpressionAtlas	FacebaseRNAseq_e10.5_Maxillary Arch_top-relative-expression-ranked_2500_k-means-cluster#5	CCAR1 DYNC2I1 DIDO1 PRPF38B PPIG EIF3A DDX46 CSNK1D SNRNP35 DHX8	1.68e-09	629	26	10	Facebase_RNAseq_e10.5_Maxillary Arch_2500_K5
CoexpressionAtlas	facebase_RNAseq_e10.5_Emin_LatNas_2500	CCAR1 DYNC2I1 FIP1L1 PRPF38B PPIG SCAF11 RBM25 EIF3A DDX46 CPSF6 ZC3H13 SNRNP35 DHX8	3.22e-09	1459	26	13	facebase_RNAseq_e10.5_Emin_LatNas_2500
CoexpressionAtlas	DevelopingGonad_e12.5_epididymis_emap-29139_top-relative-expression-ranked_1000	RBM5 FIP1L1 DIDO1 PRPF38B SCAF11 RBM25 EIF3A SRSF3 SNRNP70 ZC3H13	1.80e-08	806	26	10	gudmap_developingGonad_e12.5_epididymis_1000
CoexpressionAtlas	facebase_RNAseq_e10.5_Emin_MedNas_2500_K1	CCAR1 DYNC2I1 FIP1L1 PRPF38B PPIG RBM25 EIF3A DDX46 CPSF6 ZC3H13	2.35e-07	1060	26	10	facebase_RNAseq_e10.5_Emin_MedNas_2500_K1
CoexpressionAtlas	facebase_RNAseq_e10.5_NeuroEpith_central_2500_K4	MAGI1 DYNC2I1 FIP1L1 PRPF38B PPIG RBM25 EIF3A CPSF6 ZC3H13 SNRNP35 DHX8	2.43e-07	1370	26	11	facebase_RNAseq_e10.5_NeuroEpith_central_2500_K4
CoexpressionAtlas	DevelopingGonad_e14.5_ epididymis_emap-29141_top-relative-expression-ranked_1000	RBM5 FIP1L1 DIDO1 PRPF38B SCAF11 RBM25 EIF3A SRSF3 ZC3H13	2.59e-07	801	26	9	gudmap_developingGonad_e14.5_ epididymis_1000
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_top-relative-expression-ranked_1000_k-means-cluster#3	CCAR1 DYNC2I1 PRPF38B RBM25 EIF3A DDX46	4.31e-07	246	26	6	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_1000_K3
CoexpressionAtlas	DevelopingGonad_e12.5_epididymis_emap-29139_k-means-cluster#3_top-relative-expression-ranked_1000	RBM5 FIP1L1 DIDO1 PRPF38B SRSF3 ZC3H13	5.83e-07	259	26	6	gudmap_developingGonad_e12.5_epididymis_k3_1000
CoexpressionAtlas	DevelopingGonad_e14.5_ epididymis_emap-29141_k-means-cluster#3_top-relative-expression-ranked_1000	RBM5 FIP1L1 DIDO1 PRPF38B SRSF3 ZC3H13	8.27e-07	275	26	6	gudmap_developingGonad_e14.5_ epididymis_1000_k3
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Flanking Eminence_top-relative-expression-ranked_1000	CCAR1 MAGI1 PRPF38B PPIG EIF3A DDX46 UBR5 SCAF4 SNRNP35	1.52e-06	989	26	9	Facebase_RNAseq_e10.5_Neural Epithelium Flanking Eminence_1000
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Flanking Eminence_top-relative-expression-ranked_1000_k-means-cluster#2	CCAR1 MAGI1 PRPF38B PPIG EIF3A DDX46	1.69e-06	311	26	6	Facebase_RNAseq_e10.5_Neural Epithelium Flanking Eminence_1000_K2
CoexpressionAtlas	DevelopingGonad_e16.5_epididymis_emap-29702_top-relative-expression-ranked_1000	RBM5 FIP1L1 DIDO1 SCAF11 RBM25 EIF3A SRSF3 ZC3H13	3.05e-06	790	26	8	gudmap_developingGonad_e16.5_epididymis_1000
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Flanking Eminence_top-relative-expression-ranked_500_k-means-cluster#3	CCAR1 PRPF38B EIF3A DDX46 UBR5	3.23e-06	192	26	5	Facebase_RNAseq_e10.5_Neural Epithelium Flanking Eminence_500_K3
CoexpressionAtlas	FacebaseRNAseq_e10.5_Lateral Nasal Eminence_top-relative-expression-ranked_500_k-means-cluster#4	CCAR1 DYNC2I1 PRPF38B PPIG SCAF11	3.23e-06	192	26	5	Facebase_RNAseq_e10.5_Lateral Nasal Eminence_500_K4
CoexpressionAtlas	facebase_RNAseq_e10.5_Emin_MedNas_2500	CCAR1 DYNC2I1 FIP1L1 PRPF38B PPIG RBM25 EIF3A DDX46 CPSF6 ZC3H13	3.29e-06	1414	26	10	facebase_RNAseq_e10.5_Emin_MedNas_2500
CoexpressionAtlas	DevelopingGonad_e12.5_ovary_emap-28876_top-relative-expression-ranked_1000	RBM5 FIP1L1 DIDO1 SCAF11 RBM25 EIF3A SRSF3 ZC3H13	3.47e-06	804	26	8	gudmap_developingGonad_e12.5_ovary_1000
CoexpressionAtlas	FacebaseRNAseq_e9.5_Mandibular Arch_top-relative-expression-ranked_2500_k-means-cluster#2	DIDO1 PRPF38B PPIG YTHDC1 CSNK1D ZC3H13 DHX8	3.81e-06	564	26	7	Facebase_RNAseq_e9.5_Mandibular Arch_2500_K2
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Flanking Eminence_top-relative-expression-ranked_2500_k-means-cluster#5	CCAR1 RBM5 MAGI1 PPIG EIF3A DDX46 UBR5 SNRNP35	4.44e-06	831	26	8	Facebase_RNAseq_e10.5_Neural Epithelium Flanking Eminence_2500_K5
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_top-relative-expression-ranked_2500_k-means-cluster#5	MAGI1 DYNC2I1 PRPF38B RBM25 EIF3A DDX46 UBR5	1.00e-05	654	26	7	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_2500_K5
CoexpressionAtlas	FacebaseRNAseq_e10.5_Maxillary Arch_top-relative-expression-ranked_1000_k-means-cluster#3	CCAR1 DYNC2I1 PRPF38B PPIG EIF3A DDX46	1.12e-05	432	26	6	Facebase_RNAseq_e10.5_Maxillary Arch_1000_K3
CoexpressionAtlas	FacebaseRNAseq_e10.5_Maxillary Arch_top-relative-expression-ranked_500_k-means-cluster#3	CCAR1 DYNC2I1 PRPF38B PPIG EIF3A	1.29e-05	255	26	5	Facebase_RNAseq_e10.5_Maxillary Arch_500_K3
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_top-relative-expression-ranked_1000	CCAR1 MAGI1 DYNC2I1 PRPF38B RBM25 EIF3A DDX46 UBR5	1.52e-05	983	26	8	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_1000
CoexpressionAtlas	FacebaseRNAseq_e8.5_Floor Plate_top-relative-expression-ranked_2500_k-means-cluster#1	CCAR1 PRPF38B SCAF11 RBM25 EIF3A DDX46	1.78e-05	469	26	6	Facebase_RNAseq_e8.5_Floor Plate_2500_K1
CoexpressionAtlas	DevelopingGonad_e12.5_ovary_emap-28876_k-means-cluster#3_top-relative-expression-ranked_1000	RBM5 FIP1L1 DIDO1 SRSF3 ZC3H13	1.91e-05	277	26	5	gudmap_developingGonad_e12.5_ovary_k3_1000
CoexpressionAtlas	DevelopingGonad_e16.5_epididymis_emap-29702_k-means-cluster#2_top-relative-expression-ranked_1000	RBM5 FIP1L1 DIDO1 SRSF3 ZC3H13	2.16e-05	284	26	5	gudmap_developingGonad_e16.5_epididymis_1000_k2
CoexpressionAtlas	FacebaseRNAseq_e10.5_Lateral Nasal Eminence_top-relative-expression-ranked_1000_k-means-cluster#3	CCAR1 DYNC2I1 PRPF38B PPIG SCAF11	2.43e-05	291	26	5	Facebase_RNAseq_e10.5_Lateral Nasal Eminence_1000_K3
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Flanking Eminence_top-relative-expression-ranked_500	CCAR1 PRPF38B EIF3A DDX46 UBR5 SNRNP35	2.49e-05	498	26	6	Facebase_RNAseq_e10.5_Neural Epithelium Flanking Eminence_500
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Central Eminence_top-relative-expression-ranked_1000_k-means-cluster#4	MAGI1 SCAF11 EIF3A DDX46 SNRNP35	2.72e-05	298	26	5	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Central Eminence_1000_K4
CoexpressionAtlas	FacebaseRNAseq_e10.5_Lateral Nasal Eminence_top-relative-expression-ranked_2500_k-means-cluster#1	CCAR1 RBM5 MAGI1 DYNC2I1 PRPF38B PPIG SCAF11	3.14e-05	780	26	7	Facebase_RNAseq_e10.5_Lateral Nasal Eminence_2500_K1
CoexpressionAtlas	DevelopingGonad_P2_epididymis_emap-30199_top-relative-expression-ranked_1000	RBM5 PRPF38B SCAF11 RBM25 EIF3A SRSF3 ZC3H13	3.60e-05	797	26	7	gudmap_developingGonad_P2_epididymis_1000
CoexpressionAtlas	DevelopingGonad_e18.5_epididymis_emap-13166_top-relative-expression-ranked_1000	RBM5 FIP1L1 SCAF11 RBM25 EIF3A SRSF3 ZC3H13	3.66e-05	799	26	7	gudmap_developingGonad_e18.5_epididymis_1000
CoexpressionAtlas	DevelopingGonad_e11.5_ovary + mesonephros_emap-3226_top-relative-expression-ranked_1000	RBM5 FIP1L1 SCAF11 RBM25 EIF3A SRSF3 ZC3H13	4.15e-05	815	26	7	gudmap_developingGonad_e11.5_ovary + mesonephros_1000
CoexpressionAtlas	DevelopingGonad_e16.5_epididymis_emap-29702_k-means-cluster#2_top-relative-expression-ranked_500	RBM5 FIP1L1 SRSF3 ZC3H13	4.28e-05	162	26	4	gudmap_developingGonad_e16.5_epididymis_500_k2
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Medial Eminence_top-relative-expression-ranked_2500_k-means-cluster#4	DIDO1 PRPF38B PPIG CSNK1D SNRNP35 DHX8	6.73e-05	595	26	6	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Medial Eminence_2500_K4
CoexpressionAtlas	DevelopingGonad_e16.5_ovary_emap-9563_k-means-cluster#1_top-relative-expression-ranked_1000	RBM5 SCAF11 RBM25 EIF3A	6.74e-05	182	26	4	gudmap_developingGonad_e16.5_ovary_1000_k1
CoexpressionAtlas	FacebaseRNAseq_e10.5_Mandibular Arch_top-relative-expression-ranked_500_k-means-cluster#5	CCAR1 DYNC2I1 PRPF38B DDX46	7.33e-05	186	26	4	Facebase_RNAseq_e10.5_Mandibular Arch_500_K5
CoexpressionAtlas	facebase_RNAseq_e10.5_MandArch_2500_K1	CCAR1 DYNC2I1 PRPF38B PPIG SCAF11 RBM25 EIF3A DDX46	8.06e-05	1241	26	8	facebase_RNAseq_e10.5_MandArch_2500_K1
CoexpressionAtlas	DevelopingGonad_e12.5_epididymis_emap-29139_top-relative-expression-ranked_500	RBM5 SCAF11 RBM25 EIF3A ZC3H13	1.14e-04	403	26	5	gudmap_developingGonad_e12.5_epididymis_500
CoexpressionAtlas	DevelopingGonad_e18.5_epididymis_emap-13166_top-relative-expression-ranked_500	RBM5 SCAF11 EIF3A SRSF3 ZC3H13	1.15e-04	404	26	5	gudmap_developingGonad_e18.5_epididymis_500
CoexpressionAtlas	DevelopingGonad_e16.5_epididymis_emap-29702_top-relative-expression-ranked_500	RBM5 FIP1L1 EIF3A SRSF3 ZC3H13	1.18e-04	406	26	5	gudmap_developingGonad_e16.5_epididymis_500
CoexpressionAtlas	DevelopingGonad_e12.5_ovary_emap-28876_top-relative-expression-ranked_500	RBM5 RBM25 EIF3A SRSF3 ZC3H13	1.22e-04	409	26	5	gudmap_developingGonad_e12.5_ovary_500
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Central Eminence_top-relative-expression-ranked_1000	CCAR1 MAGI1 PRPF38B SCAF11 EIF3A DDX46 SNRNP35	1.38e-04	986	26	7	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Central Eminence_1000
CoexpressionAtlas	FacebaseRNAseq_e10.5_Maxillary Arch_top-relative-expression-ranked_1000	CCAR1 DYNC2I1 PRPF38B PPIG EIF3A DDX46 SNRNP35	1.40e-04	989	26	7	Facebase_RNAseq_e10.5_Maxillary Arch_1000
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_top-relative-expression-ranked_500_k-means-cluster#5	MAGI1 DYNC2I1 EIF3A DDX46	1.72e-04	232	26	4	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_500_K5
CoexpressionAtlas	DevelopingGonad_P2_epididymis_emap-30199_k-means-cluster#3_top-relative-expression-ranked_1000	RBM5 PRPF38B SRSF3 ZC3H13	2.25e-04	249	26	4	gudmap_developingGonad_P2_epididymis_1000_k3
CoexpressionAtlas	facebase_RNAseq_e10.5_MandArch_2500	CCAR1 DYNC2I1 PRPF38B PPIG SCAF11 RBM25 EIF3A DDX46	2.59e-04	1468	26	8	facebase_RNAseq_e10.5_MandArch_2500
CoexpressionAtlas	FacebaseRNAseq_e10.5_Maxillary Arch_top-relative-expression-ranked_500	CCAR1 DYNC2I1 PRPF38B PPIG EIF3A	2.88e-04	492	26	5	Facebase_RNAseq_e10.5_Maxillary Arch_500
CoexpressionAtlas	FacebaseRNAseq_e10.5_Lateral Nasal Eminence_top-relative-expression-ranked_500	CCAR1 DYNC2I1 PRPF38B PPIG SCAF11	2.88e-04	492	26	5	Facebase_RNAseq_e10.5_Lateral Nasal Eminence_500
CoexpressionAtlas	FacebaseRNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_top-relative-expression-ranked_500	MAGI1 DYNC2I1 PRPF38B EIF3A DDX46	2.90e-04	493	26	5	Facebase_RNAseq_e10.5_Neural Epithelium Overlying Lateral Eminence_500
CoexpressionAtlas	DevelopingGonad_e16.5_ovary_emap-9563_top-relative-expression-ranked_1000	RBM5 DIDO1 SCAF11 RBM25 EIF3A ZC3H13	3.27e-04	795	26	6	gudmap_developingGonad_e16.5_ovary_1000
CoexpressionAtlas	DevelopingGonad_e18.5_epididymis_emap-13166_k-means-cluster#3_top-relative-expression-ranked_1000	RBM5 FIP1L1 SRSF3 ZC3H13	3.57e-04	281	26	4	gudmap_developingGonad_e18.5_epididymis_1000_k3
CoexpressionAtlas	DevelopingGonad_e12.5_epididymis_emap-29139_k-means-cluster#3_top-relative-expression-ranked_500	SCAF11 RBM25 EIF3A	3.58e-04	114	26	3	gudmap_developingGonad_e12.5_epididymis_k3_500
CoexpressionAtlas	FacebaseRNAseq_e8.5_Hind Brain Neural Epithelium_top-relative-expression-ranked_2500_k-means-cluster#3	SCAF11 RBM25 EIF3A DDX46 UBR5	4.12e-04	532	26	5	Facebase_RNAseq_e8.5_Hind Brain Neural Epithelium_2500_K3
CoexpressionAtlas	FacebaseRNAseq_e10.5_Medial Nasal Eminence_top-relative-expression-ranked_1000_k-means-cluster#4	PRPF38B PPIG RBM25 EIF3A	4.45e-04	298	26	4	Facebase_RNAseq_e10.5_Medial Nasal Eminence_1000_K4
CoexpressionAtlas	DevelopingKidney_e14.5 whole kidney - wildtype_emap-6674_k-means-cluster#3_top-relative-expression-ranked_1000	RBM25 EIF3A DDX46	5.14e-04	129	26	3	gudmap_developingKidney_e14.5 whole kidney - wildtype_1000_k3
CoexpressionAtlas	facebase_RNAseq_e10.5_MaxArch_2500_K3	CCAR1 DYNC2I1 PRPF38B PPIG RBM25 EIF3A DDX46	5.94e-04	1252	26	7	facebase_RNAseq_e10.5_MaxArch_2500_K3
CoexpressionAtlas	DevelopingGonad_P2_epididymis_emap-30199_k-means-cluster#1_top-relative-expression-ranked_1000	SCAF11 RBM25 EIF3A	6.00e-04	136	26	3	gudmap_developingGonad_P2_epididymis_1000_k1
CoexpressionAtlas	DevelopingGonad_e11.5_ovary + mesonephros_emap-3226_k-means-cluster#2_top-relative-expression-ranked_1000	RBM5 FIP1L1 SRSF3 ZC3H13	6.03e-04	323	26	4	gudmap_developingGonad_e11.5_ovary + mesonephros_k2_1000
CoexpressionAtlas	DevelopingGonad_e12.5_ovary_emap-28876_k-means-cluster#4_top-relative-expression-ranked_1000	SCAF11 RBM25 EIF3A	7.97e-04	150	26	3	gudmap_developingGonad_e12.5_ovary_k4_1000
CoexpressionAtlas	DevelopingGonad_P2_ovary_emap-30224_k-means-cluster#5_top-relative-expression-ranked_1000	RBM5 SRSF3 ZC3H13	8.13e-04	151	26	3	gudmap_developingGonad_P2_ovary_1000_k5
CoexpressionAtlas	DevelopingGonad_e11.5_ovary + mesonephros_emap-3226_k-means-cluster#4_top-relative-expression-ranked_1000	SCAF11 RBM25 EIF3A	8.93e-04	156	26	3	gudmap_developingGonad_e11.5_ovary + mesonephros_k4_1000
CoexpressionAtlas	DevelopingGonad_e12.5_ovary_emap-28876_k-means-cluster#3_top-relative-expression-ranked_500	RBM5 SRSF3 ZC3H13	9.79e-04	161	26	3	gudmap_developingGonad_e12.5_ovary_k3_500
CoexpressionAtlas	DevelopingGonad_e11.5_ovary + mesonephros_emap-3226_k-means-cluster#4_top-relative-expression-ranked_500	RBM5 SRSF3 ZC3H13	1.18e-03	172	26	3	gudmap_developingGonad_e11.5_ovary + mesonephros_k4_500
CoexpressionAtlas	DevelopingGonad_e14.5_ epididymis_emap-29141_k-means-cluster#2_top-relative-expression-ranked_1000	SCAF11 RBM25 EIF3A	1.44e-03	184	26	3	gudmap_developingGonad_e14.5_ epididymis_1000_k2
CoexpressionAtlas	DevelopingGonad_e14.5_ epididymis_emap-29141_top-relative-expression-ranked_500	RBM5 SCAF11 SRSF3 ZC3H13	1.50e-03	413	26	4	gudmap_developingGonad_e14.5_ epididymis_500
CoexpressionAtlas	FacebaseRNAseq_e10.5_Medial Nasal Eminence_top-relative-expression-ranked_2500_k-means-cluster#4	DYNC2I1 PRPF38B PPIG RBM25 EIF3A	1.86e-03	744	26	5	Facebase_RNAseq_e10.5_Medial Nasal Eminence_2500_K4
CoexpressionAtlas	FacebaseRNAseq_e8.5_Hind Brain Neural Epithelium_top-relative-expression-ranked_1000_k-means-cluster#5	SCAF11 EIF3A DDX46	1.93e-03	204	26	3	Facebase_RNAseq_e8.5_Hind Brain Neural Epithelium_1000_K5
CoexpressionAtlas	DevelopingGonad_e18.5_ovary_emap-12283_k-means-cluster#2_top-relative-expression-ranked_1000	RBM5 SRSF3 ZC3H13	2.10e-03	210	26	3	gudmap_developingGonad_e18.5_ovary_1000_k2
CoexpressionAtlas	DevelopingGonad_e14.5_ ovary_emap-6699_top-relative-expression-ranked_1000	RBM5 FIP1L1 RBM25 EIF3A ZC3H13	2.23e-03	776	26	5	gudmap_developingGonad_e14.5_ ovary_1000
CoexpressionAtlas	DevelopingGonad_e18.5_ovary_emap-12283_top-relative-expression-ranked_1000	RBM5 SCAF11 EIF3A SRSF3 ZC3H13	2.26e-03	778	26	5	gudmap_developingGonad_e18.5_ovary_1000
CoexpressionAtlas	facebase_RNAseq_e8.5_NeuroEpith_hindBrain_2500_K1	PRPF38B PPIG EIF3A DDX46 ZC3H13 SCAF4	2.39e-03	1164	26	6	facebase_RNAseq_e8.5_NeuroEpith_hindBrain_2500_K1
CoexpressionAtlas	DevelopingGonad_e12.5_ovary_emap-28876_k-means-cluster#4_top-relative-expression-ranked_500	RBM25 EIF3A	2.44e-03	60	26	2	gudmap_developingGonad_e12.5_ovary_k4_500
CoexpressionAtlas	DevelopingGonad_e12.5_epididymis_emap-29139_k-means-cluster#2_top-relative-expression-ranked_200	RBM5 ZC3H13	2.52e-03	61	26	2	gudmap_developingGonad_e12.5_epididymis_k2_200
CoexpressionAtlas	DevelopingGonad_e14.5_ ovary_emap-6699_k-means-cluster#3_top-relative-expression-ranked_1000	RBM5 FIP1L1 ZC3H13	2.55e-03	225	26	3	gudmap_developingGonad_e14.5_ ovary_1000_k3
CoexpressionAtlas	DevelopingGonad_e16.5_ovary_emap-9563_k-means-cluster#2_top-relative-expression-ranked_1000	RBM5 DIDO1 ZC3H13	2.71e-03	230	26	3	gudmap_developingGonad_e16.5_ovary_1000_k2
CoexpressionAtlas	FacebaseRNAseq_e10.5_Mandibular Arch_top-relative-expression-ranked_500	CCAR1 DYNC2I1 PRPF38B DDX46	2.84e-03	492	26	4	Facebase_RNAseq_e10.5_Mandibular Arch_500
CoexpressionAtlas	DevelopingGonad_P2_ovary_emap-30224_k-means-cluster#2_top-relative-expression-ranked_500	RBM5 ZC3H13	2.86e-03	65	26	2	gudmap_developingGonad_P2_ovary_500_k2
CoexpressionAtlas	DevelopingGonad_e18.5_epididymis_emap-13166_k-means-cluster#5_top-relative-expression-ranked_500	SCAF11 EIF3A	3.50e-03	72	26	2	gudmap_developingGonad_e18.5_epididymis_500_k5
CoexpressionAtlas	DevelopingGonad_e12.5_epididymis_emap-29139_k-means-cluster#1_top-relative-expression-ranked_1000	SCAF11 RBM25 EIF3A	3.87e-03	261	26	3	gudmap_developingGonad_e12.5_epididymis_k1_1000
CoexpressionAtlas	DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k-means-cluster#5_top-relative-expression-ranked_1000	FIP1L1 DIDO1	3.89e-03	76	26	2	gudmap_developingKidney_e15.5_Medullary collecting duct_1000_k5
CoexpressionAtlas	DevelopingGonad_e16.5_epididymis_emap-29702_k-means-cluster#4_top-relative-expression-ranked_200	RBM5 SRSF3	3.89e-03	76	26	2	gudmap_developingGonad_e16.5_epididymis_200_k4
CoexpressionAtlas	FacebaseRNAseq_e10.5_Mandibular Arch_top-relative-expression-ranked_1000_k-means-cluster#3	DYNC2I1 PRPF38B DDX46	4.30e-03	271	26	3	Facebase_RNAseq_e10.5_Mandibular Arch_1000_K3
CoexpressionAtlas	facebase_RNAseq_e8.5_NeuroEpith_hindBrain_2500	PRPF38B PPIG EIF3A DDX46 ZC3H13 SCAF4	4.94e-03	1347	26	6	facebase_RNAseq_e8.5_NeuroEpith_hindBrain_2500
CoexpressionAtlas	facebase_RNAseq_e8.5_FloorPlate_2500_K3	CCAR1 PRPF38B PPIG EIF3A DDX46 SCAF4	5.39e-03	1371	26	6	facebase_RNAseq_e8.5_FloorPlate_2500_K3
CoexpressionAtlas	DevelopingGonad_e14.5_ epididymis_emap-29141_k-means-cluster#5_top-relative-expression-ranked_200	RBM5 ZC3H13	5.52e-03	91	26	2	gudmap_developingGonad_e14.5_ epididymis_200_k5
CoexpressionAtlas	FacebaseRNAseq_e10.5_Lateral Nasal Eminence_top-relative-expression-ranked_1000	CCAR1 DYNC2I1 PRPF38B PPIG SCAF11	6.20e-03	985	26	5	Facebase_RNAseq_e10.5_Lateral Nasal Eminence_1000
CoexpressionAtlas	DevelopingGonad_e18.5_ovary_emap-12283_k-means-cluster#3_top-relative-expression-ranked_500	RBM5 ZC3H13	6.25e-03	97	26	2	gudmap_developingGonad_e18.5_ovary_500_k3
CoexpressionAtlas	DevelopingGonad_e14.5_ ovary_emap-6699_k-means-cluster#1_top-relative-expression-ranked_500	RBM5 ZC3H13	6.76e-03	101	26	2	gudmap_developingGonad_e14.5_ ovary_500_k1
CoexpressionAtlas	DevelopingGonad_e16.5_ovary_emap-9563_k-means-cluster#5_top-relative-expression-ranked_500	RBM5 ZC3H13	7.83e-03	109	26	2	gudmap_developingGonad_e16.5_ovary_500_k5
ToppCell	H1299-infected-SARSCoV2\|infected / Cell line, Condition and Strain	CCAR1 RBM5 DYNC2I1 PRPF38B PPIG RBM25 EIF3A DDX46 SNRNP70 YTHDC1 ZC3H13	1.05e-19	197	27	11	0fa3e4cf93e77d78b1f97b906c5b13ca741ae17e
ToppCell	(11)_FOXN4+-(2)_GFP_FOXI1\|(11)_FOXN4+ / shred by cell type by condition	DYNC2I1 PRPF38B PPIG SCAF11 RBM25 ZC3H13	1.85e-09	198	27	6	76d40b8c2f8399725b3a62ee2ae0896559cf91eb
ToppCell	droplet-Tongue-nan\|Tongue / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PRPF38B PPIG SCAF11 RBM25 EIF3A	9.05e-08	188	27	5	d62cc37e86b7b186e53aeb7f421c4e5ee28f23bd
ToppCell	H1299-infected\|H1299 / Cell line, Condition and Strain	CCAR1 RBM5 PRPF38B RBM25 EIF3A	1.00e-07	192	27	5	9cf8049bdc3e0f81ce69042beac72b08d8f38b4e
ToppCell	megakaryocytic-CD34+_Megakaryoblast\|megakaryocytic / Lineage and Cell class	PPIG SCAF11 RBM25 EIF3A DDX46	1.20e-07	199	27	5	99a65887d3c8a2cde26693dd74404b101bba9d58
ToppCell	mild-low-quality_cells\|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class	CDK11A LUC7L RBM25 YTHDC1 CD226	1.20e-07	199	27	5	f0b0097df0026496470a80d8cc9375ffd8389b00
ToppCell	(09)_Interm._secr.>cil.-(2)_GFP_FOXI1\|(09)_Interm._secr.>cil. / shred by cell type by condition	DYNC2I1 PPIG SCAF11 DDX46 ZC3H13	1.20e-07	199	27	5	fc680f85ebd3bab4c72876a19a461b0afb5f51ce
ToppCell	TCGA-Pancreas-Primary_Tumor-Pancreatic_Adenocarcinoma-Ductal_Adenocarcinoma-1\|TCGA-Pancreas / Sample_Type by Project: Shred V9	PPIG SCAF11 DDX46 ZC3H13	4.61e-06	186	27	4	03db813598b67b1e08f759758a1c2023396921fa
ToppCell	droplet-Bladder-nan\|Bladder / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	PPIG SCAF11 RBM25 YTHDC1	4.71e-06	187	27	4	663991a8afe652e92363b64bcbd68c14d0307f0e
ToppCell	Myeloid-Myeloid-B_(Activated_Macrophage)\|Myeloid / shred on cell class and cell subclass (v4)	RBM25 EIF3A DDX46 ZC3H13	5.12e-06	191	27	4	7bf125249af1e8bb138ed4d999fdd74b03ab2447
ToppCell	COVID-19_Mild\|World / Disease group, lineage and cell class	SCAF11 RBM25 YTHDC1 CSNK1D	5.78e-06	197	27	4	5c33454b10023decd2f5ccda9229b6512659711e
ToppCell	(04)_Interm._basal>secr.-(2)_GFP_FOXI1\|(04)_Interm._basal>secr. / shred by cell type by condition	PPIG RBM25 DDX46 ZC3H13	6.02e-06	199	27	4	53ca3861f9e00dab3f3fbefb0837857ee39ab084
ToppCell	mild\|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class	SCAF11 RBM25 EIF3A YTHDC1	6.14e-06	200	27	4	12f1685ce8f218433068e090c9d839cd5a1910bf
ToppCell	Brain_organoid-organoid_Tanaka_cellReport-6m-Neuronal-Intermediate\|6m / Sample Type, Dataset, Time_group, and Cell type.	SCAF11 RBM25 YTHDC1 ZC3H13	6.14e-06	200	27	4	7c261e39ac30b318511373ab7302aa53b8b81b9c
ToppCell	TCGA-Peripheral_Nervous_System-Primary_Tumor-Paraganglioma-Paraganglioma-3\|TCGA-Peripheral_Nervous_System / Sample_Type by Project: Shred V9	DIDO1 SCAF11 CPSF6	7.33e-05	135	27	3	ac20133d4a36f48338b45bffb13e842cb66f83ad
ToppCell	(08)_Brush+PNEC-(2)_GFP_FOXI1\|(08)_Brush+PNEC / shred by cell type by condition	DYNC2I1 PPIG ZC3H13	7.82e-05	138	27	3	817e3f639604ea95adae01e8685ffaa2e0aff7a8
ToppCell	human_hepatoblastoma-Tumor_cells\|World / Sample and Cell Type and Tumor Cluster (all cells)	SCAF11 UBR5 CPSF6	2.08e-04	192	27	3	916fbec1c7ab7969bda711886ac88e877e30c280
ToppCell	COVID-19_Mild-PLT_4\|World / Disease Group and Platelet Clusters	RBM5 FIP1L1 SRSF3	2.11e-04	193	27	3	98a52523aa1efd5d14a2878ed106828a80a33aa2
ToppCell	human_hepatoblastoma\|World / Sample and Cell Type and Tumor Cluster (all cells)	SCAF11 UBR5 CPSF6	2.11e-04	193	27	3	e6a688bc834f845ff64dae1be64f073eec5091a1
ToppCell	COVID-19_Severe-PLT_4\|World / Disease Group and Platelet Clusters	FIP1L1 PPIG SRSF3	2.20e-04	196	27	3	ad43efdd4d73b6615f65f06a315b33576e317473
ToppCell	COVID-19_Severe-PLT_4\|COVID-19_Severe / Disease Group and Platelet Clusters	FIP1L1 PPIG SRSF3	2.27e-04	198	27	3	abfddbee99ef8c7719e6e6f62571e9be030e4acf
ToppCell	(05)_Secretory-(2)_GFP_FOXI1\|(05)_Secretory / shred by cell type by condition	PPIG RBM25 ZC3H13	2.31e-04	199	27	3	d72d87e1e530ed894c0ad5e7b5b2b1d6b59fa098
ToppCell	(01)_IL1RL1+-(2)_GFP_FOXI1\|(01)_IL1RL1+ / shred by cell type by condition	PPIG RBM25 ZC3H13	2.31e-04	199	27	3	a2f7d0cabf35b80fe239fae34a77bf9344d5d743
Computational	Neighborhood of TDG	EIF3A SRSF3 CPSF6	5.36e-05	35	23	3	GNF2_TDG
Computational	Neighborhood of HDAC1	SCAF11 DDX46 SRSF3 YTHDC1	7.91e-05	110	23	4	GNF2_HDAC1
Computational	Neighborhood of DEK	EIF3A SRSF3 CPSF6	2.45e-04	58	23	3	GNF2_DEK
Computational	Neighborhood of DDX5	RBM5 SCAF11 YTHDC1	3.13e-04	63	23	3	GNF2_DDX5
Computational	RNA splicing.	RBM5 SRSF3 DHX8	3.43e-04	65	23	3	MODULE_183
Computational	Neighborhood of RBBP6	FIP1L1 SCAF11 RBM25	4.27e-04	70	23	3	GNF2_RBBP6
Computational	Neighborhood of APEX1	EIF3A SRSF3 CPSF6	9.49e-04	92	23	3	GNF2_APEX1
Computational	Neighborhood of MAX	CCAR1 RBM25	1.96e-03	31	23	2	GCM_MAX
Computational	Neighborhood of DAP3	DDX46 SRSF3 CPSF6	1.99e-03	119	23	3	GNF2_DAP3
Computational	Neighborhood of CSNK1D	UBR5 CSNK1D	2.09e-03	32	23	2	GCM_CSNK1D
Computational	Neighborhood of G22P1	SRSF3 CPSF6	2.64e-03	36	23	2	GNF2_G22P1
Computational	Neighborhood of HDAC1	SCAF11 SRSF3	2.94e-03	38	23	2	GCM_HDAC1
Drug	3-deazacytidine	PPIG SCAF11 EIF3A SRSF3 SNRNP70	3.97e-06	206	27	5	CID000001652
Drug	Theophylline	FIP1L1 PRPF38B EIF3A SRSF3 YTHDC1 DHX8	3.08e-05	532	27	6	ctd:D013806
Drug	AC1NRA5C	DDX46 SRSF3 SNRNP70 AKAP17A	5.04e-05	174	27	4	CID005287709
Drug	chrysene	DIDO1 PRPF38B PPIG RBM25 SNRNP70 YTHDC1 UBR5	5.31e-05	871	27	7	ctd:C031180
Drug	Sanguinarine [2447-54-3]; Down 200; 12uM; MCF7; HT_HG-U133A	RBM5 SCAF11 EIF3A UBR5	7.24e-05	191	27	4	4168_DN
Drug	SC-560; Up 200; 10uM; MCF7; HT_HG-U133A	DYNC2I1 FIP1L1 RBM25 UBR5	7.85e-05	195	27	4	6913_UP
Drug	Homocysteine	SCAF11 YTHDC1 AKAP17A ZC3H13	7.85e-05	195	27	4	ctd:D006710
Drug	ICI 182,780; Down 200; 1uM; ssMCF7; HG-U133A	FIP1L1 LUC7L UBR5 DHX8	8.00e-05	196	27	4	523_DN
Drug	STOCK1N-35696; Up 200; 15uM; PC3; HT_HG-U133A	RBM5 LUC7L RBM25 SCAF4	8.16e-05	197	27	4	6564_UP
Disease	hip bone mineral density	MAGI1 PRPF38B	5.92e-03	126	27	2	EFO_0007702
Disease	Tinnitus	MAGI1 FIP1L1	6.29e-03	130	27	2	HP_0000360

Protein segments in the cluster

Peptide	Gene	Start	Entry
DDRSRERERERRRSR	CCAR1	316	Q8IX12
RDRERDRDRDRERSS	RBM25	361	P49756
RSRSREKSRDRERER	RBM25	381	P49756
RRARSPERRRERSLD	MAGI1	1431	Q96QZ7
RREEREREERLSRRS	LUC7L	246	Q9NQ29
RSRDRSHERNRDRDR	NELFE	186	P18615
RGERDRDRQRERRRD	DYNC2I1	81	Q8WVS4
RERRDREERLRHSRN	CSNK1D	306	P48730
RDRDRDRERERTRER	FIP1L1	471	Q6UN15
DRDDRDERESRSRRR	RBM5	21	P52756
RRRRRRDSRSSEREE	PPIG	621	Q13427
YRERSRERERHRDRD	CPSF6	521	Q16630
RERERHRDRDRDRDR	CPSF6	526	Q16630
DSSRRDDRDRDDRRR	EIF3A	1261	Q14152
RSRERSRNRERERDR	DIDO1	2171	Q9BTC0
SRNRERERDRRRDRD	DIDO1	2176	Q9BTC0
RRDRDRSRSRERDRD	DIDO1	2186	Q9BTC0
RSRSRERDRDKARDR	DIDO1	2191	Q9BTC0
RREMAREHSRRERDR	CDK11A	141	Q9UQ88
RSKRGDDRRSRSRDR	DDX46	31	Q7L014
DDRRSRSRDRDRRRE	DDX46	36	Q7L014
NRRRRRERRDLFTES	CD226	276	Q15762
HRDRERDSRDRESRR	SCAF4	1056	O95104
SDRDGQRRERERRTR	SCAF11	916	Q99590
RSRSRDRNRDRDRDR	DHX8	176	Q14562
RDRDRDRERERRERS	SNRNP70	231	P08621
RRERSRERDKERERR	SNRNP70	241	P08621
RERDKERERRRSRSR	SNRNP70	246	P08621
DRRRRSRSRDKEERR	SNRNP70	261	P08621
SRSRDKEERRRSRER	SNRNP70	266	P08621
KGRDRDRERRRSHRS	SNRNP70	346	P08621
DRERRRSHRSERERR	SNRNP70	351	P08621
RSHRSERERRRDRDR	SNRNP70	356	P08621
SKDRHRRERSRERRG	AKAP17A	651	Q02040
RDRRRERSLSRERNH	SRSF3	131	P84103
RSRDRKGDRRDRDRE	PRPF38B	341	Q5VTL8
RERRERSRSRERHWD	SNRNP35	181	Q16560
RDNRRDRERDRGRDR	YTHDC1	691	Q96MU7
RDRRDARDTRDRREL	ZC3H13	456	Q5T200
RDREREREREMRRSS	UBR5	2336	O95071