Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctionprotein decrotonylase activity

HDAC3 HDAC8 HDAC1

6.39e-075813GO:0160008
GeneOntologyMolecularFunctionhistone decrotonylase activity

HDAC3 HDAC8 HDAC1

6.39e-075813GO:0160009
GeneOntologyMolecularFunctionhistone deacetylase activity

HDAC3 HDAC8 HDAC1

1.22e-0424813GO:0004407
GeneOntologyMolecularFunctionprotein lysine deacetylase activity

HDAC3 HDAC8 HDAC1

1.39e-0425813GO:0033558
GeneOntologyMolecularFunctiondeacetylase activity

HDAC3 HDAC8 HDAC1

5.70e-0440813GO:0019213
GeneOntologyBiologicalProcessprotein ubiquitination

TRAF3IP2 HDAC3 PARP10 AMER1 UBR5 KLHDC3 FANCI KCTD10 HDAC8 USP7 EIPR1 DCAF4 VCP

1.77e-058118213GO:0016567
GeneOntologyBiologicalProcessregulation of TOR signaling

HDAC3 RELN ITFG2 USP7 MAPKAPK5 F7

3.98e-05158826GO:0032006
GeneOntologyBiologicalProcessprotein modification by small protein conjugation

TRAF3IP2 HDAC3 PARP10 AMER1 UBR5 KLHDC3 FANCI KCTD10 HDAC8 USP7 EIPR1 DCAF4 VCP

4.82e-058938213GO:0032446
GeneOntologyBiologicalProcessDNA repair

DPF1 HINFP PARP10 LIG1 SETD2 MEIOC UBR5 FANCI USP7 POLQ VCP

5.00e-056488211GO:0006281
GeneOntologyBiologicalProcessintracellular transport

TRAF3IP2 HDAC3 SETD2 MDN1 MIA2 UBR5 ENTR1 USP7 IPO13 HRC SCRIB EIPR1 ANKRD50 BBS12 VCP PCNT KPNB1

6.83e-0514968217GO:0046907
GeneOntologyBiologicalProcessDNA metabolic process

DPF1 HINFP PARP10 LIG1 SETD2 MEIOC UBR5 KLHDC3 FANCI HDAC8 USP7 POLQ MAPKAPK5 VCP

8.46e-0510818214GO:0006259
GeneOntologyBiologicalProcessTOR signaling

HDAC3 RELN ITFG2 USP7 MAPKAPK5 F7

8.47e-05181826GO:0031929
GeneOntologyBiologicalProcesstranslesion synthesis

PARP10 POLQ VCP

1.47e-0426823GO:0019985
GeneOntologyBiologicalProcesscell cycle process

DPF1 HINFP HDAC3 LIG1 TMEM67 SETD2 MYBBP1A KIF2B MEIOC KLHDC3 ENTR1 HDAC8 NCAPH VCP PCNT KPNB1

1.52e-0414418216GO:0022402
GeneOntologyBiologicalProcessprotein modification by small protein conjugation or removal

TRAF3IP2 HDAC3 PARP10 AMER1 UBR5 KLHDC3 FANCI KCTD10 HDAC8 USP7 EIPR1 DCAF4 VCP

1.64e-0410098213GO:0070647
GeneOntologyBiologicalProcessgrowth plate cartilage chondrocyte proliferation

CER1 DSPP

2.32e-046822GO:0003419
GeneOntologyBiologicalProcessregulation of intracellular transport

HDAC3 SETD2 UBR5 USP7 HRC EIPR1 PCNT

2.54e-04314827GO:0032386
GeneOntologyBiologicalProcessepithelial tube morphogenesis

TMEM67 SETD2 DSPP MMRN2 GBX2 SCRIB COQ7 RYR2

2.69e-04421828GO:0060562
DomainDUF3377

MMP24 MMP15 MMP16

3.13e-074813PF11857
DomainHis_deacetylse_1

HDAC3 HDAC8 HDAC1

3.13e-074813IPR003084
DomainPept_M10A_metallopeptidase_C

MMP24 MMP15 MMP16

3.13e-074813IPR021805
DomainHist_deacetyl

HDAC3 HDAC8 HDAC1

1.26e-0511813PF00850
DomainHis_deacetylse_dom

HDAC3 HDAC8 HDAC1

1.26e-0511813IPR023801
Domain-

HDAC3 HDAC8 HDAC1

1.26e-05118133.40.800.20
DomainHis_deacetylse

HDAC3 HDAC8 HDAC1

1.26e-0511813IPR000286
DomainHemopexin_CS

MMP24 MMP15 MMP16

5.11e-0517813IPR018486
DomainPept_M10A_stromelysin-type

MMP24 MMP15 MMP16

6.12e-0518813IPR016293
DomainPG_binding_1

MMP24 MMP15 MMP16

8.49e-0520813PF01471
DomainPeptidoglycan-bd-like

MMP24 MMP15 MMP16

8.49e-0520813IPR002477
DomainHemopexin-like_dom

MMP24 MMP15 MMP16

1.31e-0423813IPR000585
DomainHemopexin-like_repeat

MMP24 MMP15 MMP16

1.31e-0423813IPR018487
DomainM10A_MMP

MMP24 MMP15 MMP16

1.31e-0423813IPR033739
DomainHemopexin

MMP24 MMP15 MMP16

1.31e-0423813PF00045
DomainHEMOPEXIN

MMP24 MMP15 MMP16

1.31e-0423813PS00024
Domain-

MMP24 MMP15 MMP16

1.31e-04238132.110.10.10
DomainHEMOPEXIN_2

MMP24 MMP15 MMP16

1.31e-0423813PS51642
DomainHX

MMP24 MMP15 MMP16

1.31e-0423813SM00120
DomainPept_M10A

MMP24 MMP15 MMP16

1.31e-0423813IPR021190
DomainPeptidase_M10

MMP24 MMP15 MMP16

1.49e-0424813PF00413
DomainZnMc

MMP24 MMP15 MMP16

2.65e-0429813SM00235
DomainPeptidase_Metallo

MMP24 MMP15 MMP16

2.65e-0429813IPR006026
DomainCYSTEINE_SWITCH

MMP24 MMP15 MMP16

7.44e-0441813PS00546
DomainPept_M10_metallopeptidase

MMP24 MMP15 MMP16

8.56e-0443813IPR001818
DomainIMPORTIN_B_NT

IPO13 KPNB1

1.63e-0314812PS50166
DomainFerritin-like_SF

SETD2 COQ7

1.63e-0314812IPR009078
DomainPept_M10A_Zn_BS

MMP15 MMP16

1.88e-0315812IPR021158
DomainIBN_N

IPO13 KPNB1

1.88e-0315812PF03810
DomainIBN_N

IPO13 KPNB1

2.14e-0316812SM00913
DomainImportin-beta_N

IPO13 KPNB1

2.42e-0317812IPR001494
DomainMetalloPept_cat_dom

MMP24 MMP15 MMP16

5.26e-0381813IPR024079
Domain-

MMP24 MMP15 MMP16

5.26e-03818133.40.390.10
Pubmed

Class I HDAC activity is required for renal protection and regeneration after acute kidney injury.

HDAC3 HDAC8 HDAC1

5.23e-08483324808536
Pubmed

Expression profile of class I histone deacetylases in human cancer tissues.

HDAC3 HDAC8 HDAC1

5.23e-08483317786334
Pubmed

Changes in the expression of membrane type-matrix metalloproteinases genes (MMP14, MMP15, MMP16, MMP24) during treatment and their potential impact on the survival of patients with non-small cell lung cancer (NSCLC).

MMP24 MMP15 MMP16

5.23e-08483335062057
Pubmed

Class I histone deacetylase activity is required for proliferation of renal epithelial cells.

HDAC3 HDAC8 HDAC1

5.23e-08483323698124
Pubmed

Expression of class I histone deacetylases during chick and mouse development.

HDAC3 HDAC8 HDAC1

5.23e-08483320979029
Pubmed

Class I histone deacetylases are major histone decrotonylases: evidence for critical and broad function of histone crotonylation in transcription.

HDAC3 HDAC8 HDAC1

1.31e-07583328497810
Pubmed

Class I HDACs specifically regulate E-cadherin expression in human renal epithelial cells.

HDAC3 HDAC8 HDAC1

1.31e-07583327420561
Pubmed

HDAC3 Deficiency Promotes Liver Cancer through a Defect in H3K9ac/H3K9me3 Transition.

HDAC3 HDAC8 HDAC1

1.31e-07583331097476
Pubmed

mRNA expression of the five membrane-type matrix metalloproteinases MT1-MT5 in human prostatic cell lines and their down-regulation in human malignant prostatic tissue.

MMP24 MMP15 MMP16

1.31e-07583312661033
Pubmed

MT3-MMP Promotes Excitatory Synapse Formation by Promoting Nogo-66 Receptor Ectodomain Shedding.

MMP24 MMP15 MMP16

1.31e-07583329196321
Pubmed

HIV-1 Vpr Protein Induces Proteasomal Degradation of Chromatin-associated Class I HDACs to Overcome Latent Infection of Macrophages.

HDAC3 HDAC8 HDAC1

2.61e-07683326679995
Pubmed

The Hsp70-Hsp90 co-chaperone Hop/Stip1 shifts the proteostatic balance from folding towards degradation.

MYBBP1A MDN1 AARS2 PRPF4 FANCI CANX USP7 SCRIB VCP HDAC1 KPNB1

3.55e-07638831133239621
Pubmed

Class I histone deacetylases in retinal progenitors and differentiating ganglion cells.

HDAC3 HDAC8 HDAC1

4.56e-07783330179675
Pubmed

Membrane-type matrix metalloproteinases: Their functions and regulations.

MMP24 MMP15 MMP16

4.56e-07783325794647
Pubmed

ETO, a target of t(8;21) in acute leukemia, makes distinct contacts with multiple histone deacetylases and binds mSin3A through its oligomerization domain.

HDAC3 HDAC8 HDAC1

7.28e-07883311533236
Pubmed

Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer.

POLR1F HDAC3 SETD2 MYBBP1A MDN1 UBR5 PRPF4 FANCI USP7 NCAPH MED13 VCP HDAC1

8.17e-071014831332416067
Pubmed

Histone deacetylases 5 and 9 govern responsiveness of the heart to a subset of stress signals and play redundant roles in heart development.

HDAC3 HDAC8 HDAC1

1.09e-06983315367668
Pubmed

Histone deacetylase 10 regulates DNA mismatch repair and may involve the deacetylation of MutS homolog 2.

HDAC3 HDAC8 HDAC1

1.09e-06983326221039
Pubmed

Class II histone deacetylases: versatile regulators.

HDAC3 HDAC8 HDAC1

1.55e-061083312711221
Pubmed

Multiple histone deacetylases and the CREB-binding protein regulate pre-mRNA 3'-end processing.

HDAC3 HDAC1 KPNB1

1.55e-061083317172643
Pubmed

Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.

DPF1 SETD2 UBR5 PRPF4 ENTR1 APBA2 ADNP2 USP7 SCRIB ABCA7 SLC39A7 VCP HDAC1

2.35e-061116831331753913
Pubmed

Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription.

MYBBP1A MDN1 UBR5 FANCI CANX BYSL USP7 VCP PCNT KPNB1

3.61e-06653831022586326
Pubmed

Defining the human deubiquitinating enzyme interaction landscape.

POLR1F UBR5 PRPF4 FANCI KCTD10 APBA2 USP7 SCRIB F7 DCAF4 SLC39A7 VCP

4.67e-061005831219615732
Pubmed

Histone deacetylase expression patterns in developing murine optic nerve.

HDAC3 HDAC8 HDAC1

4.68e-061483325011550
Pubmed

Histone deacetylase 4 controls chondrocyte hypertrophy during skeletogenesis.

HDAC3 HDAC8 HDAC1

4.68e-061483315537544
Pubmed

Mapping the MOB proteins' proximity network reveals a unique interaction between human MOB3C and the RNase P complex.

POLR1F MDN1 MIA2 UBR5 USP7 NCAPH SLC39A7 HDAC1

5.21e-0639983837536630
Pubmed

Alcohol-induced serotonergic modulation: the role of histone deacetylases.

HDAC3 HDAC1

5.63e-06283222796363
Pubmed

Histone deacetylases and the immunological network: implications in cancer and inflammation.

HDAC3 HDAC1

5.63e-06283219855430
Pubmed

HIV-1 Vpr reactivates latent HIV-1 provirus by inducing depletion of class I HDACs on chromatin.

HDAC3 HDAC1

5.63e-06283227550312
Pubmed

Characterization of interaction and ubiquitination of phosphoenolpyruvate carboxykinase by E3 ligase UBR5.

UBR5 PCK1

5.63e-06283230552140
Pubmed

The arrhythmogenic human HRC point mutation S96A leads to spontaneous Ca(2+) release due to an impaired ability to buffer store Ca(2+).

HRC RYR2

5.63e-06283224805197
Pubmed

Identification of the second membrane-type matrix metalloproteinase (MT-MMP-2) gene from a human placenta cDNA library. MT-MMPs form a unique membrane-type subclass in the MMP family.

MMP15 MMP16

5.63e-0628327559440
Pubmed

Insights into the activation mechanism of class I HDAC complexes by inositol phosphates.

HDAC3 HDAC1

5.63e-06283227109927
Pubmed

Histone deacetylase-1 (HDAC1) is a molecular switch between neuronal survival and death.

HDAC3 HDAC1

5.63e-06283222918830
Pubmed

Genes of the membrane-type matrix metalloproteinase (MT-MMP) gene family, MMP14, MMP15, and MMP16, localize to human chromosomes 14, 16, and 8, respectively.

MMP15 MMP16

5.63e-0628329070935
Pubmed

VCP phosphorylation-dependent interaction partners prevent apoptosis in Helicobacter pylori-infected gastric epithelial cells.

MDN1 UBR5 FANCI CANX ENTR1 NCAPH VCP

6.02e-0628883723383273
Pubmed

Histone deacetylase 7 maintains vascular integrity by repressing matrix metalloproteinase 10.

HDAC3 HDAC8 HDAC1

7.18e-061683316873063
Pubmed

Matrix metalloproteinases in tumor invasion.

MMP24 MMP15 MMP16

7.18e-061683310949577
Pubmed

HDAC family: What are the cancer relevant targets?

HDAC3 HDAC8 HDAC1

1.04e-051883318824292
Pubmed

Large-scale mapping of human protein-protein interactions by mass spectrometry.

HDAC3 MYBBP1A UBR5 ITFG2 KLHDC3 FANCI MRPS24 ENTR1 USP7 EIPR1 POLQ SLC39A7 VCP

1.07e-051284831317353931
Pubmed

Chr21 protein-protein interactions: enrichment in proteins involved in intellectual disability, autism, and late-onset Alzheimer's disease.

CNTN4 RELN MIA2 NECAB1 CNST APBA2 ADNP2 USP7 SCRIB MED13 VCP PCNT KPNB1

1.08e-051285831335914814
Pubmed

The deubiquitinase USP7 stabilizes Maf proteins to promote myeloma cell survival.

MYBBP1A PRPF4 MRPS24 MAFA BYSL USP7

1.51e-0522083631822558
Pubmed

Cell cycle-dependent phosphorylation regulates RECQL4 pathway choice and ubiquitination in DNA double-strand break repair.

MYBBP1A AMER1 UBR5 PRPF4 CANX MRPS24 ENTR1 APBA2 BYSL USP7 VCP HDAC1 KPNB1

1.61e-051335831329229926
Pubmed

Histone deacetylase (HDAC) 1 and 2 complexes regulate both histone acetylation and crotonylation in vivo.

HDAC3 HDAC1

1.69e-05383230279482
Pubmed

HDAC1/2 and HDAC3 play distinct roles in controlling adult Meibomian gland homeostasis.

HDAC3 HDAC1

1.69e-05383238679196
Pubmed

Poly(A) binding protein (PABP) homeostasis is mediated by the stability of its inhibitor, Paip2.

UBR5 PAIP2

1.69e-05383216601676
Pubmed

USP7 and VCPFAF1 define the SUMO/Ubiquitin landscape at the DNA replication fork.

USP7 VCP

1.69e-05383234644576
Pubmed

CCN5, a novel transcriptional repressor of the transforming growth factor β signaling pathway.

HDAC3 HDAC1

1.69e-05383221262769
Pubmed

Regulation of the HIF-1alpha stability by histone deacetylases.

HDAC3 HDAC1

1.69e-05383217273746
Pubmed

STAT3 repressed USP7 expression is crucial for colon cancer development.

USP7 HDAC1

1.69e-05383222750444
Pubmed

Class I histone deacetylases 1, 2 and 3 are highly expressed in renal cell cancer.

HDAC3 HDAC1

1.69e-05383219099586
Pubmed

Histone deacetylases 1, 2 and 3 are highly expressed in prostate cancer and HDAC2 expression is associated with shorter PSA relapse time after radical prostatectomy.

HDAC3 HDAC1

1.69e-05383218212746
Pubmed

Histone deacetylase 1 and 3 regulate the mesodermal lineage commitment of mouse embryonic stem cells.

HDAC3 HDAC1

1.69e-05383225412078
Pubmed

Expression and subcellular distribution of imp13 are regulated in brain development.

IPO13 KPNB1

1.69e-05383223605716
Pubmed

HDAC1/HDAC3 modulates PPARG2 transcription through the sumoylated CEBPD in hepatic lipogenesis.

HDAC3 HDAC1

1.69e-05383218619497
Pubmed

Role of the LXCXE binding site in Rb function.

HDAC3 HDAC1

1.69e-05383210958676
Pubmed

The Cohesin loading factor NIPBL recruits histone deacetylases to mediate local chromatin modifications.

HDAC3 HDAC1

1.69e-05383218854353
Pubmed

Combination of polymorphisms within the HDAC1 and HDAC3 gene predict tumor recurrence in hepatocellular carcinoma patients that have undergone transplant therapy.

HDAC3 HDAC1

1.69e-05383220731616
Pubmed

Involvement of a novel zinc finger protein, MIZF, in transcriptional repression by interacting with a methyl-CpG-binding protein, MBD2.

HINFP HDAC1

1.69e-05383211553631
Pubmed

Screening of histone deacetylases (HDAC) expression in human prostate cancer reveals distinct class I HDAC profiles between epithelial and stromal cells.

HDAC8 HDAC1

1.69e-05383215590418
Pubmed

Frequent amplification of HDAC genes and efficacy of HDAC inhibitor chidamide and PD-1 blockade combination in soft tissue sarcoma.

HDAC3 HDAC1

1.69e-05383233637599
Pubmed

Class I histone deacetylase expression has independent prognostic impact in human colorectal cancer: specific role of class I histone deacetylases in vitro and in vivo.

HDAC3 HDAC1

1.69e-05383218347167
Pubmed

The coactivator role of histone deacetylase 3 in IL-1-signaling involves deacetylation of p65 NF-κB.

HDAC3 HDAC1

1.69e-05383223087373
Pubmed

Nuclear Smad7 Overexpressed in Mesenchymal Cells Acts as a Transcriptional Corepressor by Interacting with HDAC-1 and E2F to Regulate Cell Cycle.

HDAC3 HDAC1

1.69e-05383223213415
Pubmed

Benzyl isothiocyanate-mediated inhibition of histone deacetylase leads to NF-kappaB turnoff in human pancreatic carcinoma cells.

HDAC3 HDAC1

1.69e-05383220484017
Pubmed

Expression patterns of histone deacetylases in bovine oocytes and early embryos, and the effect of their inhibition on embryo development.

HDAC3 HDAC1

1.69e-05383211358320
Pubmed

Histone deacetylase 9 couples neuronal activity to muscle chromatin acetylation and gene expression.

HDAC3 HDAC1

1.69e-05383215711539
Pubmed

Type-specific roles of histone deacetylase (HDAC) overexpression in ovarian carcinoma: HDAC1 enhances cell proliferation and HDAC3 stimulates cell migration with downregulation of E-cadherin.

HDAC3 HDAC1

1.69e-05383220049841
Pubmed

A cancer cell metalloprotease triad regulates the basement membrane transmigration program.

MMP15 MMP16

1.69e-05383216983145
Pubmed

Retinoic acid and histone deacetylases regulate epigenetic changes in embryonic stem cells.

HDAC3 HDAC1

1.69e-05383224821725
Pubmed

Assignment of the human genes for membrane-type-1, -2, and -3 matrix metalloproteinases (MMP14, MMP15, and MMP16) to 14q12.2, 16q12.2-q21, and 8q21, respectively, by in situ hybridization.

MMP15 MMP16

1.69e-0538329119382
Pubmed

Histone deacetylase 1 (HDAC1) regulates histone acetylation, development, and gene expression in preimplantation mouse embryos.

HDAC3 HDAC1

1.69e-05383218501342
Pubmed

Colon cancer cells maintain low levels of pyruvate to avoid cell death caused by inhibition of HDAC1/HDAC3.

HDAC3 HDAC1

1.69e-05383218789002
Pubmed

Hydroxamic acid derivatives as HDAC1, HDAC6 and HDAC8 inhibitors with antiproliferative activity in cancer cell lines.

HDAC8 HDAC1

1.69e-05383232591593
Pubmed

HDAC inhibition activates the apoptosome via Apaf1 upregulation in hepatocellular carcinoma.

HDAC3 HDAC1

1.69e-05383227342975
Pubmed

Comprehensive characterization of migration profiles of murine cerebral cortical neurons during development using FlashTag labeling.

RELN GBX2

1.69e-05383233851097
Pubmed

Class I HDAC inhibition blocks cocaine-induced plasticity by targeted changes in histone methylation.

HDAC3 HDAC1

1.69e-05383223475113
Pubmed

Class I histone deacetylases 1, 2 and 3 are highly expressed in classical Hodgkin's lymphoma.

HDAC3 HDAC1

1.69e-05383220415600
Pubmed

Inhibition of glyceroneogenesis by histone deacetylase 3 contributes to lipodystrophy in mice with adipose tissue inflammation.

HDAC3 PCK1

1.69e-05383221406501
Pubmed

Expression of histone deacetylases 1, 2 and 3 in histological subtypes of testicular germ cell tumours.

HDAC3 HDAC1

1.69e-05383221972094
Pubmed

Downregulation of Cell Cycle and Checkpoint Genes by Class I HDAC Inhibitors Limits Synergism with G2/M Checkpoint Inhibitor MK-1775 in Bladder Cancer Cells.

HDAC3 HDAC1

1.69e-05383233670166
Pubmed

Receptor-interacting protein 140 directly recruits histone deacetylases for gene silencing.

HDAC3 HDAC1

1.69e-05383211006275
Pubmed

Ablation of HRC alleviates cardiac arrhythmia and improves abnormal Ca handling in CASQ2 knockout mice prone to CPVT.

HRC RYR2

1.69e-05383226410369
Pubmed

Structure of the human UBR5 E3 ubiquitin ligase.

UBR5 PCK1

1.69e-05383237040767
Pubmed

Molecular determinants of PAM2 recognition by the MLLE domain of poly(A)-binding protein.

UBR5 PAIP2

1.69e-05383220096703
Pubmed

Histone deacetylase inhibitors downregulate checkpoint kinase 1 expression to induce cell death in non-small cell lung cancer cells.

HDAC3 HDAC1

1.69e-05383221179472
Pubmed

Proteomic profiling of VCP substrates links VCP to K6-linked ubiquitylation and c-Myc function.

POLR1F MYBBP1A MDN1 UBR5 MAP4K3 FANCI BYSL ADNP2 USP7 SCRIB NCAPH VCP KPNB1

1.85e-051353831329467282
Pubmed

Functional interactions between matrix metalloproteinases and glycosaminoglycans.

MMP24 MMP15 MMP16

1.95e-052283323421805
Pubmed

Matrix metalloproteinases.

MMP24 MMP15 MMP16

1.95e-052283310419448
Pubmed

Defining the membrane proteome of NK cells.

MYBBP1A MDN1 MIA2 UBR5 CNST FANCI CANX BYSL NCAPH MED13 PCNT KPNB1

2.09e-051168831219946888
Pubmed

LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells.

AMER1 UBR5 PRPF4 FANCI MRPS24 ENTR1 F7 VCP HDAC1

2.21e-0563983923443559
Pubmed

Impaired plasma membrane localization of ubiquitin ligase complex underlies 3-M syndrome development.

ARHGAP32 SETD2 MYBBP1A PRPF4 CANX MRPS24 BYSL POLQ

2.50e-0549683831343991
Pubmed

Matrix metalloproteinases 2 and 9 are dispensable for pancreatic islet formation and function in vivo.

MMP24 MMP15 MMP16

2.56e-052483315734845
Pubmed

Transcriptome analysis of mouse stem cells and early embryos.

HINFP ARHGAP32 MYBBP1A CCNYL1 MDN1 FANCI DCAF4

2.68e-0536383714691545
Pubmed

Murine craniofacial development requires Hdac3-mediated repression of Msx gene expression.

HDAC3 HDAC8 HDAC1

3.27e-052683323506836
Pubmed

Insufficient p65 phosphorylation at S536 specifically contributes to the lack of NF-kappaB activation and transformation in resistant JB6 cells.

HDAC3 HDAC1

3.37e-05483215192014
Pubmed

Phosphorylation of RUNX1 by cyclin-dependent kinase reduces direct interaction with HDAC1 and HDAC3.

HDAC3 HDAC1

3.37e-05483221059642
Pubmed

Inactivation of CREB mediated gene transcription by HDAC8 bound protein phosphatase.

HDAC8 HDAC1

3.37e-05483219070599
Pubmed

The splicing regulator SLU7 is required to preserve DNMT1 protein stability and DNA methylation.

USP7 HDAC1

3.37e-05483234331453
Pubmed

Isolation and characterization of cDNAs corresponding to an additional member of the human histone deacetylase gene family.

HDAC3 HDAC1

3.37e-0548329346952
InteractionFOXL1 interactions

HDAC3 MDN1 MID1IP1 AARS2 CANX USP7 SCRIB NCAPH

1.47e-06196838int:FOXL1
Cytoband6p21.1

AARS2 KLHDC3 BYSL DNPH1

1.41e-05808346p21.1
GeneFamilyHistone deacetylases, class I|EMSY complex|NuRD complex|SIN3 histone deacetylase complex

HDAC3 HDAC8 HDAC1

1.19e-074573989
GeneFamilyEndogenous ligands|Matrix metallopeptidases

MMP24 MMP15 MMP16

5.74e-0524573891
GeneFamilyArmadillo repeat containing|Importins

IPO13 KPNB1

1.45e-0318572596
CoexpressionTOYOTA_TARGETS_OF_MIR34B_AND_MIR34C

DENND5B LIG1 ARHGAP32 SETD2 MDN1 ITFG2 MANEAL HDAC8 KPNB1

1.37e-05454839M19927
CoexpressionGSE11057_EFF_MEM_VS_CENT_MEM_CD4_TCELL_DN

MDN1 CNST KLHDC3 HDAC8 APBA2 USP7

3.09e-05189836M3112
CoexpressionGSE5542_UNTREATED_VS_IFNG_TREATED_EPITHELIAL_CELLS_6H_UP

MDN1 CNST DSPP MRPS24 MAPKAPK5 ABCA7

3.90e-05197836M6512
CoexpressionGSE17721_0.5H_VS_8H_GARDIQUIMOD_BMDC_DN

TRAF3IP2 KCTD10 ENTR1 RIMOC1 ABCA7 HDAC1

4.12e-05199836M4142
CoexpressionGSE17580_TREG_VS_TEFF_UP

LIG1 MDN1 KLHDC3 DNPH1 DCAF4 VCP

4.24e-05200836M3670
CoexpressionAtlasdev gonad_e13.5_F_VascAssocMesenchStromOvary_Sma_k-means-cluster#2_top-relative-expression-ranked_200

CNTN4 IGFBP2 COL6A5 RYR2

1.62e-0540814gudmap_dev gonad_e13.5_F_VascAssocMesenchStromOvary_Sma_k2_200
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-5517_k-means-cluster#4_top-relative-expression-ranked_1000

CANX ENTR1 USP7 DNPH1 MED13 RYR2 VCP KPNB1

1.10e-04385818gudmap_developingLowerUrinaryTract_e14.5_ urogenital sinus_1000_k4
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ bladder_emap-30872_k-means-cluster#5_top-relative-expression-ranked_1000

CANX USP7 MMP16 ZC3H6 MED13 RYR2 VCP KPNB1

1.36e-04397818gudmap_developingLowerUrinaryTract_e14.5_ bladder_1000_k5
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-5517_k-means-cluster#5_top-relative-expression-ranked_200

MED13 RYR2 VCP KPNB1

1.41e-0469814gudmap_developingLowerUrinaryTract_e14.5_ urogenital sinus_200_k5
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-5517_k-means-cluster#2_top-relative-expression-ranked_500

CANX ENTR1 MED13 RYR2 VCP KPNB1

1.49e-04209816gudmap_developingLowerUrinaryTract_e14.5_ urogenital sinus_500_k2
CoexpressionAtlasdev gonad_e13.5_F_VascAssocMesenchStromOvary_Sma_k-means-cluster#1_top-relative-expression-ranked_500

CNTN4 IGFBP2 COL6A5 RYR2

1.94e-0475814gudmap_dev gonad_e13.5_F_VascAssocMesenchStromOvary_Sma_k1_500
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ bladder_emap-30872_k-means-cluster#1_top-relative-expression-ranked_500

CNTN4 CANX MMP16 MED13 RYR2 KPNB1

2.55e-04231816gudmap_developingLowerUrinaryTract_e14.5_ bladder_500_k1
CoexpressionAtlasFacebaseRNAseq_e10.5_Neural Epithelium Flanking Eminence_top-relative-expression-ranked_1000_k-means-cluster#4

DPF1 SETD2 UBR5 MANEAL PCNT KPNB1

2.55e-04231816Facebase_RNAseq_e10.5_Neural Epithelium Flanking Eminence_1000_K4
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_k-means-cluster#2_top-relative-expression-ranked_1000

CANX USP7 MMP16 MED13 RYR2 VCP KPNB1

2.67e-04330817DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_k2_1000
ToppCellrenal_cortex_nuclei-Adult_normal_reference-Epithelial-Proximal_tubule_epithelial_cell-kidney_proximal_tubule_epithelial_cell_cycling-Cycling_Proximal_Tubule_Epithelial_Cell_S-high|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

LIG1 FANCI POLQ NCAPH F7

1.61e-051698350bc8ef341ce307b19018d4ac8de0a4d04254209d
ToppCellrenal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Distal_tubule_epithelial_cell-kidney_distal_convoluted_tubule_epithelial_cell_cycling-Cycling_Distal_Convoluted_Tubule_Cell_S-high|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

LIG1 FANCI OMD POLQ NCAPH

1.61e-05169835e7514956b2e4298222ec443f98b2f5289451786e
ToppCellrenal_medulla_nuclei-Hypertensive_with+without-CKD-Epithelial-Proximal_tubule_epithelial_cell-kidney_proximal_tubule_epithelial_cell_cycling-Cycling_Proximal_Tubule_Epithelial_Cell_S-high|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group

LIG1 FANCI OMD POLQ NCAPH

1.61e-05169835121768fc51fc3441ec725346a1bbe29e21d05971
ToppCellPND14-Endothelial-Endothelial_blood-vessel-Microvascular_EC-EPC-EPC_prolif|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

DPF1 LIG1 CCNYL1 FANCI DNPH1

1.76e-051728352b6cd84c946b1e800caba452ae70145ea285fec1
ToppCellsystemic_lupus_erythematosus-flare-Hematopoietic-progenitor_cell|systemic_lupus_erythematosus / PBMC cell types (v2) per disease, treatment status, and sex

DPF1 MMP24 IGFBP2 NECAB1 ZSCAN23

2.56e-05186835ffd4510b4435d9bf94c2ef14c629f73ab78c5d93
ToppCellsystemic_lupus_erythematosus-flare-Hematopoietic-progenitor_cell-female|systemic_lupus_erythematosus / PBMC cell types (v2) per disease, treatment status, and sex

DPF1 MMP24 IGFBP2 NECAB1 ZSCAN23

2.69e-05188835c613c6c7b6de8ed514253c9f9b8622c56fcc1452
ToppCellPBMC-Mild-cDC_12|Mild / Compartment, Disease Groups and Clusters

LIG1 FANCI POLQ NCAPH KPNB1

2.76e-05189835946c95d2ecc36b241f58e8c4ad6455fe47c762fa
ToppCellPCW_10-12-Mesenchymal-Mesenchymal_myocytic-mes_pericyte_(14)|PCW_10-12 / Celltypes from embryonic and fetal-stage human lung

CNTN4 IGFBP2 NECAB1 HRC RYR2

2.98e-051928355000440dc1ed17e7474d340921bdff945646f27e
ToppCellPCW_07-8.5-Mesenchymal-Mesenchymal_myocytic-mes_proliferating_SM_(20)|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung

DPF1 LIG1 FANCI POLQ NCAPH

3.05e-05193835516ea2c12bdc7a5dc676159d627e36f6abe13ef0
ToppCell3'_v3-blood-Lymphocytic_NK-Cycling_NK|blood / Manually curated celltypes from each tissue

LIG1 IGFBP2 FANCI POLQ NCAPH

3.13e-05194835bf9734abaad603ade2a6a6940918aaf1e1c4e2cd
ToppCellPCW_07-8.5-Mesenchymal-Mesenchymal_cycling-mes_proliferating1_(3)|PCW_07-8.5 / Celltypes from embryonic and fetal-stage human lung

DPF1 LIG1 FANCI POLQ NCAPH

3.21e-05195835b65463a804fed2d9a3be9e528ca8b9c98469bc86
ToppCellCOVID-19-T_cells-Cycling_NK/T_cells|COVID-19 / group, cell type (main and fine annotations)

LIG1 FANCI POLQ NCAPH PCNT

3.21e-05195835764ed100c28d9bc93ee5ecabc5291c8f184d78da
ToppCellBronchial-NucSeq-Epithelial-Epi_airway_basal-Dividing_Basal|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations

AARS2 FANCI MANEAL BYSL POLQ

3.21e-051958355812b1615676f3b77eb4769216b98b360c417c0d
ToppCellTracheal-NucSeq-Epithelial-Epi_airway_basal-Dividing_Basal|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations

LIG1 FANCI OMD POLQ NCAPH

3.45e-05198835f088badb90c6c2d916195f5649eda102119c9ac6
ToppCellmLN-T_cell-cycling_gd_T|mLN / Region, Cell class and subclass

MMP24 IGFBP2 FANCI POLQ NCAPH

3.62e-052008354efeef51f885ee8f6dd3911a536cc49e3c14da98
ToppCellmLN-(1)_T_cell-(18)_cycling_gd_T|mLN / shred on region, Cell_type, and subtype

MMP24 IGFBP2 FANCI POLQ NCAPH

3.62e-05200835e8a0a88a8344e80783931115bbe6cd5b62a4c1f7
ToppCellFetal_brain-organoid_Tanaka_cellReport-GW12-Stem_cells|GW12 / Sample Type, Dataset, Time_group, and Cell type.

CNTN4 MIA2 FANCI POLQ NCAPH

3.62e-052008350bba93f1271dac704dddcdea8cb0f84a7ac6f42a
ToppCellFetal_brain-organoid_Tanaka_cellReport-GW12-Stem_cells-Neuroepithelial_cell|GW12 / Sample Type, Dataset, Time_group, and Cell type.

CNTN4 MIA2 FANCI POLQ NCAPH

3.62e-05200835c9479452ab8c51139522383f745f02171ebbd7e2
ToppCellmild-T/NK_proliferative|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class

LIG1 FANCI POLQ NCAPH PCNT

3.62e-0520083563cc57b9331459efbb73051d174d198a3568b938
ToppCellPosterior_cortex-Neuronal-Excitatory-eN1(Slc17a7)-eN1_1-Bcl6-Excitatory_Neuron.Slc17a7.Bcl6-Pvalb_(Layer_5a)|Posterior_cortex / BrainAtlas - Mouse McCarroll V32

KIF2B F7 PCK1

1.18e-045183328d6b12c44ad308560931d275e0dd0243a555bf3
ToppCellE18.5-samps-Mesenchymal-Pericyte-pericyte_B|E18.5-samps / Age Group, Lineage, Cell class and subclass

HINFP APBA2 BYSL RBBP8NL

1.82e-041518348ba15ab24fe2e71df0a2a7511ca451ad2376bd91
ToppCellprimary_visual_cortex-Neuronal-GABAergic_neuron-Lamp5-Lamp5_Ntn1_Npy2r|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

RELN IGFBP2 NECAB1 CPS1

1.87e-041528348ff5a178a8f3550d89a003c0858820aab3773386
ToppCellLPS-IL1RA+antiTNF-Unknown-Endothelial-Myofibroblast|LPS-IL1RA+antiTNF / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2

HINFP DOK1 MDN1 APBA2

1.97e-0415483416fdafb5c64d2db321554f87129a962d113f1668
ToppCellfacs-Marrow-B-cells-24m-Lymphocytic-precursor_B_cell|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

CNTN4 COL6A5 CPS1 RYR2

2.27e-04160834c381ec6be8cf887861cc18f831a20db42f953fe1
ToppCellfacs-Marrow-B-cells-24m-Lymphocytic-pre_B_cell|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

CNTN4 COL6A5 CPS1 RYR2

2.27e-0416083425c8f3d2a6d14ff0ca0b965fce89d3ff22f40585
ToppCelldroplet-Lung-nan-3m-Myeloid-Proliferating_Dendritic|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

AARS2 FANCI POLQ NCAPH

2.27e-041608348a7a73b0ee1877fe02d47f745d36ae2858b529e1
ToppCell390C-Myeloid-Dendritic-cDC_proliferating_2|Dendritic / Donor, Lineage, Cell class and subclass (all cells)

MMP24 MORN1 MMRN2 NCAPH

2.39e-04162834a957c7e347189b72fbd47db3075bb5e879a21c67
ToppCellrenal_medulla_nuclei-CKD+DKD_normotensive-Mesenchymal-Myocytic_interstitial_cell-Vascular_Smooth_Muscle_Cell_/_Pericyte-|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

DOK1 CNTN4 OMD NCAPH

2.56e-041658344f83ac71efc57be3668d8db1e62bad05dc6a5e2b
ToppCell10x_3'_v2v3-Neoplastic-Stem-like-OPC-like-OPC-like_Prolif-B|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group

IGFBP2 MANEAL GBX2 NCAPH

2.56e-04165834c042cde64b61ae195e1054f7b560151dabbfdf0d
ToppCellrenal_medulla_nuclei-CKD+DKD_normotensive-Mesenchymal-Myocytic_interstitial_cell-Vascular_Smooth_Muscle_Cell_/_Pericyte|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

DOK1 CNTN4 OMD NCAPH

2.56e-04165834cd8de98af8a1a8a6c81d71fae807cc07f319f4c9
ToppCell390C-Myeloid-Dendritic-cDC_proliferating_2|Myeloid / Donor, Lineage, Cell class and subclass (all cells)

MMP24 FANCI MMRN2 NCAPH

2.56e-04165834a5c3af634d2698f9a01cf074791756b7669f9fff
ToppCellPND14-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT2-AT2_prolif|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

LIG1 MID1IP1 DNPH1 RBBP8NL

2.62e-04166834575c325db88d6909cdf0d5e664bd9098b89d4401
ToppCellrenal_medulla_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Proximal_tubule_epithelial_cell-kidney_proximal_tubule_epithelial_cell_cycling|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

LIG1 FANCI POLQ NCAPH

2.68e-0416783450c29ea660bf07b890e4ac1a1985d0761d863dee
ToppCellrenal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Collecting_tubule_epithelial_cell-kidney_connecting_tubule_epithelial_cell_cycling-Cycling_Connecting_Tubule_Cell_S-high|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

LIG1 FANCI OMD POLQ

2.68e-04167834108ae6221c6edc63c0ec42c42471b3a15a594043
ToppCellPND10-Epithelial-Epithelial_Alveolar-Epithelial_Alveolar-AT2-AT2_prolif|PND10 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

LIG1 MID1IP1 FANCI PCNT

2.87e-041708344ce81608111b9ee7cb974dad2c182f38db3dcd79
ToppCellControl-Stromal_mesenchymal-Lung_smooth_muscle-Pericyte_2|Control / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2

CNTN4 ARHGAP32 ANKRD50 RYR2

2.87e-041708345570c0e825bca77613bf0ebde620cf744fa1cb84
ToppCellrenal_cortex_nuclei-Adult_normal_reference-Mesenchymal-Myocytic_interstitial_cell-Cycling_Myofibroblast-|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

DPF1 FANCI POLQ NCAPH

2.93e-04171834b0373ed8283ee1792b6a490bff93906546978593
ToppCellrenal_cortex_nuclei-Adult_normal_reference-Mesenchymal-Myocytic_interstitial_cell-Cycling_Myofibroblast|Adult_normal_reference / Celltypes from Cells and Nuclei per compartment and clinical group

DPF1 FANCI POLQ NCAPH

2.93e-04171834b92963f9f247d2e5e2e6c51c6dbf70e527cd2f55
ToppCell367C-Lymphocytic-NK_cells-Proliferating_NK_cell|367C / Donor, Lineage, Cell class and subclass (all cells)

LIG1 APBA2 POLQ NCAPH

2.93e-041718344ede6e916e593f208f2f8ccf82ef2335e061fc86
ToppCellfacs-Heart-RV-18m|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

RELN IGFBP2 COL6A5 DCAF4

3.00e-04172834a26a73c41e5a05c9dd47a99f3320295f684c5e54
ToppCell367C-Lymphocytic-CD4_T-cell-Proliferating_T_cell|367C / Donor, Lineage, Cell class and subclass (all cells)

LIG1 FANCI POLQ NCAPH

3.00e-041728348d20eda599abf1e9e3e3b90f314acddee6a465a4
ToppCell10x5'-bone_marrow-Lymphocytic_NK-Cycling_NK|bone_marrow / Manually curated celltypes from each tissue

LIG1 FANCI POLQ NCAPH

3.06e-041738348a9dd85f718564c07cf3120ad648daeb60c94fc5
ToppCellPND28-Endothelial-Endothelial_blood-vessel-Microvascular_EC-CAP1-CAP1_prolif|PND28 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

ARHGAP32 MMRN2 SCRIB NCAPH

3.06e-0417383412f779b8dce79431b2d1002ba524dd3f9566aeb0
ToppCellPND07-Endothelial-Endothelial_blood-vessel-Macrovascular_EC-AEC-AEC_prolif|PND07 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

CCNYL1 MMRN2 GBX2 SLC39A7

3.06e-041738344968712af1cca8c932abd3323631d7dcaffd4a66
ToppCellprimary_auditory_cortex_(A1C)-Neuronal-Glutamatergic_Excit-Glut_E_(THEMIS)|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

CNTN4 IGFBP2 NECAB1 MMP16

3.13e-04174834bc978a2148a0261a4f9d1ca5479b707e224566be
ToppCellASK452-Immune-NK_cell|ASK452 / Donor, Lineage and Cell class of Lung cells from Dropseq

MIA2 APBA2 NCAPH HDAC1

3.13e-04174834b84e6dc1c003a677234ce3a818650ff58a45dd09
ToppCellnormal_Lung-T/NK_cells-Exhausted_Tfh|T/NK_cells / Location, Cell class and cell subclass

DNPH1 NCAPH BBS12 RYR2

3.13e-04174834e324320b52c904496e26fcecfa179b3431729ec0
ToppCellfacs-Lung-ENDOMUCIN-18m-Endothelial-Lymphatic_endothelial_cell|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

RELN AARS2 NECAB1 APBA2

3.20e-041758349d082ba0e350162aa6e71b668be074b12a27c7ab
ToppCellsystemic_lupus_erythematosus-managed-Lymphocytic_B-plasmablast-male|systemic_lupus_erythematosus / PBMC cell types (v2) per disease, treatment status, and sex

DENND5B FANCI POLQ NCAPH

3.20e-0417583489bf89466191da14896ed8928027f5b911436c22
ToppCellrenal_cortex_nuclei-CKD+DKD_normotensive-Immune-Myeloid-Macrophage_Dendritic-Cycling_Mononuclear_Phagocyte|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

DOK1 OMD POLQ NCAPH

3.20e-04175834f7d191cde68de8f3457fa62b1df53b6d0dbe5001
ToppCellfacs-Lung-ENDOMUCIN-18m-Endothelial-endothelial_cell_of_lymphatic_vessel|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

RELN AARS2 NECAB1 APBA2

3.20e-04175834f641f34b52aec5d047430a6f9d026e915da6c11d
ToppCell10x3'2.3-week_17-19-Neuro|week_17-19 / cell types per 3 fetal stages;per 3',per 5'

CNTN4 GAL3ST1 MANEAL MMP15

3.20e-04175834bbce8b1a160b414c0bf643c21c4e5e78fbccb7e1
ToppCell10x3'2.3-week_17-19-Neuro-stroma-schwann_cells|week_17-19 / cell types per 3 fetal stages;per 3',per 5'

CNTN4 GAL3ST1 MANEAL MMP15

3.20e-041758348b010220cdfb680ec839572f4933adfb85045ea6
ToppCell10x3'2.3-week_17-19-Neuro-stroma|week_17-19 / cell types per 3 fetal stages;per 3',per 5'

CNTN4 GAL3ST1 MANEAL MMP15

3.20e-041758340b579aeadcc06be83627391c0b01bd8605fdbdf3
ToppCell367C-Myeloid-Dendritic-cDC_proliferating_1|367C / Donor, Lineage, Cell class and subclass (all cells)

PRPF4 FANCI POLQ NCAPH

3.34e-04177834ba701d3c90722d8bff70d0fa651899305cdad257
ToppCelldroplet-Heart-4Chambers-18m-Endothelial-coronary_vascular_endothelial_cell|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

DENND5B MMRN2 POLQ MMP15

3.41e-04178834ba2f0585626988b511046630bc16be5c5fec3fb2
ToppCellPND28-Immune-Immune_Myeloid-DC-cDC1-cDC1_prolif|PND28 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

LIG1 ARHGAP32 CCNYL1 NCAPH

3.48e-041798349dea57494d59abd6e8abf34e31faf53462ea0fa0
ToppCellPBMC-Severe-Myeloid-Neutrophil-immature_Neutrophil-|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)

KIF2B FANCI POLQ NCAPH

3.48e-04179834e1bfd553c043ebc070ccf8545d489ba16d9b2ef4
ToppCell10x5'-bone_marrow-Hematopoietic_progenitors-Cycling_pre-Myeloid-1|bone_marrow / Manually curated celltypes from each tissue

IGFBP2 FANCI POLQ NCAPH

3.63e-04181834ccd0ed30cea3fb41d34f28b3e8d80a94493bef3c
ToppCellfacs-Liver-Hepatocytes-24m-Epithelial|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MIA2 CPS1 MMP15 F7

3.71e-04182834770ce9f3f4538d0181a0181543841bc964c68274
ToppCell10x5'-Liver-Lymphocytic_T_CD4/8-lo-Cycling_T|Liver / Manually curated celltypes from each tissue

LIG1 FANCI POLQ NCAPH

3.71e-0418283481557cdc88777f3bd4e1dd18a760b08fc29122ef
ToppCellfacs-Liver-Hepatocytes-24m-Epithelial-nan|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MIA2 CPS1 MMP15 F7

3.71e-0418283477ab860e2add49dad0c1ffbfc64278ad499dfbd5
ToppCellfacs-Liver-Hepatocytes-24m-Epithelial-hepatocyte|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MIA2 CPS1 MMP15 F7

3.71e-041828344921c7d5687cc79f896b39753bb621d7e3d2972f
ToppCellPND14-Endothelial-Endothelial_blood-vessel-Microvascular_EC-CAP2-CAP2_prolif|PND14 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

BYSL ADNP2 DCAF4 MED13

3.79e-041838343ef9ac1ae13b6172f9121ab1c129ecaa0fef460f
ToppCelldroplet-Lung-18m-Hematologic-myeloid-classical_monocyte_proliferating-classical_monocyte_proliferating_l33-52|18m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

LIG1 FANCI POLQ NCAPH

3.95e-0418583447c69500877b851c0c9744f5e1ef2ee0bff99168
ToppCell10x5'-bone_marrow-Myeloid_Dendritic-Cycling_Dendritic|bone_marrow / Manually curated celltypes from each tissue

DPF1 FANCI POLQ NCAPH

3.95e-041858349d3168c7f0b1d739f78b368969cf5c77ce202b97
ToppCellControl-Endothelial-Endothelial-Artery|Control / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2

IGFBP2 NECAB1 MMRN2 MMP16

4.03e-041868342d3a975d2bf92e18e3410dd413fc9f84831d82de
ToppCellPBMC_fresh-frozen-Severe-critical_convalescent_d42-56-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c13-MKI67-CCL5_l|Severe-critical_convalescent_d42-56 / Compartment, severity and other cell annotations on 10x 3' data (130k)

LIG1 FANCI POLQ NCAPH

4.03e-04186834993c58ef4445bf81bbc9b489635883848b5b4c8e
ToppCell390C-Lymphocytic-CD4_T-cell-Treg_cell_3|Lymphocytic / Donor, Lineage, Cell class and subclass (all cells)

TRAF3IP2 MRPS24 DNPH1 NCAPH

4.03e-0418683474eb69a52090f9e2426a47e03a1c478ee0cfec18
ToppCellrenal_cortex_nuclei-Renal_AKI_(acute_kidney_injury)-Epithelial-Proximal_tubule_epithelial_cell-kidney_proximal_tubule_epithelial_cell_cycling|Renal_AKI_(acute_kidney_injury) / Celltypes from Cells and Nuclei per compartment and clinical group

LIG1 FANCI POLQ NCAPH

4.11e-041878349351fa87b69a951af85b10bf91fe9b1cce8c0517
ToppCelldroplet-Lung-nan-21m-Lymphocytic-Proliferating_T|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

LIG1 FANCI POLQ NCAPH

4.19e-0418883461ae7405ab56570409bf35382dc0a038e4137c15
ToppCellNS-critical-d_0-4-Lymphoid-NKT-proliferating|d_0-4 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

LIG1 FANCI POLQ NCAPH

4.28e-04189834d6bd46abb072b13a6b72f1ca25d19f218cceb1ff
ToppCell5'-GW_trimst-2-LargeIntestine-Mesenchymal-immature_mesenchymal_cell-cycling_stromal|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

LIG1 FANCI POLQ NCAPH

4.28e-04189834fd8834d1feb7f63911c5fa51efb1f679a8baddeb
ToppCellMid-temporal_gyrus_(MTG)-Neuronal-Glutamatergic_Excit|Mid-temporal_gyrus_(MTG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

ARHGAP32 NECAB1 MMP16 RYR2

4.28e-04189834a75226616340045b581d08429d2e123e041dee55
ToppCellLPS_only-Endothelial-Endothelial-Artery|LPS_only / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2

IGFBP2 NECAB1 MMRN2 MMP16

4.28e-04189834b028466fcd36fdeceec752e55a24286a1cd62ae4
ToppCellSomatosensory_Cortex_(S1)-Neuronal-Glutamatergic_Excit|Somatosensory_Cortex_(S1) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

ARHGAP32 NECAB1 MMP16 RYR2

4.36e-04190834d594da827e3c16644952b9589cc12b947ce36279
ToppCell368C-Lymphocytic-CD8+_Cytotoxic_T-cell-CD8+_Cytotoxic_T_cell_3|CD8+_Cytotoxic_T-cell / Donor, Lineage, Cell class and subclass (all cells)

PRPF4 MAP4K3 KLHDC3 MAPKAPK5

4.36e-04190834651a1d3ae286e40f9d9f60e438211c6148d24143
ToppCellPBMC-Severe-cDC_12|Severe / Compartment, Disease Groups and Clusters

LIG1 FANCI NCAPH KPNB1

4.36e-0419083484ee185939bdefb10705b621a70da27701eadcee
ToppCellSevere-Lymphoid-T-NK|Severe / Condition, Lineage, Cell class and cell subclass

FANCI APBA2 OMD POLQ

4.36e-0419083460642de433f84fa2cecd796c3a1a4aab9219d3db
ToppCellNS-moderate-d_16-33-Epithelial-FOXN4+|d_16-33 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

LIG1 TMEM67 FANCI PCNT

4.36e-04190834250ca4a605c1cccd77d23383e4fe6f91cf3609ba
ToppCellPCW_05-06-Mesenchymal-Mesenchymal_myocytic-mes_proliferating_SM_(20)|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung

LIG1 FANCI POLQ NCAPH

4.36e-04190834e83fa8b711aa79a1767818474f1c193b674b1c31
ToppCellprimary_auditory_cortex_(A1C)-Neuronal-Glutamatergic_Excit|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

ARHGAP32 NECAB1 MMP16 RYR2

4.36e-0419083449e09cdb843b3d889a06a811aa5affae68b25a75
ToppCelldroplet-Lung-21m-Hematologic-lymphocytic-Proliferating_T_cell-proliferating_T|21m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

LIG1 FANCI POLQ NCAPH

4.45e-0419183415dbc5a03bfab8931c0fd385b0f25874736ae874
ToppCellwk_20-22-Hematologic_Lymphocytic-NK-Cycling_NK|wk_20-22 / Celltypes from embryonic and fetal-stage human lung

LIG1 FANCI POLQ NCAPH

4.45e-041918345d4fed25bd318472a17228b12ade4c331865bda5
ToppCelldroplet-Lung-21m-Hematologic-lymphocytic-Proliferating_T_cell|21m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

LIG1 FANCI POLQ NCAPH

4.45e-0419183445c15f5ce4a207ac944bed65d45f06c1657d1a6d
ToppCellLPS-antiTNF-Endothelial-Endothelial-Artery|LPS-antiTNF / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2

IGFBP2 NECAB1 MMRN2 MMP16

4.45e-041918344b3d5157344dbfbf4fab518611cd9fa37fac7bd9
ToppCelltumor_Lymph_Node_/_Brain-T/NK_cells-Undetermined|tumor_Lymph_Node_/_Brain / Location, Cell class and cell subclass

LIG1 FANCI NCAPH HDAC1

4.54e-041928343856c4d611224cd6c2558631147cd5333bc0ccb7
ToppCellPBMC_fresh-frozen-Severe-critical_progression_d12-22-Lymphocytic-Lymphocytic_B-Plasma_cell-B_c05-MZB1-XBP1|Severe-critical_progression_d12-22 / Compartment, severity and other cell annotations on 10x 3' data (130k)

CANX DNPH1 SLC39A7 VCP

4.63e-0419383443ffa8ecc72bebcd204279db2bde98ae48d97f90
ToppCellPCW_10-12-Mesenchymal-Mesenchymal_myocytic-mes_proliferating_SM_(20)|PCW_10-12 / Celltypes from embryonic and fetal-stage human lung

LIG1 FANCI POLQ NCAPH

4.63e-04193834bbdfda6665941cfa1965418bb91ef9ff43b1326f
ToppCellhuman_hepatoblastoma-Tumor_cells-T1|Tumor_cells / Sample and Cell Type and Tumor Cluster (all cells)

LIG1 FANCI POLQ NCAPH

4.63e-041938344b9fa2a4424f8abe63fa7bee78db93dda04ab15f
ToppCellTCGA-Endometrium-Primary_Tumor-Endometrial_Adenocarcinoma-Endometrioid-1|TCGA-Endometrium / Sample_Type by Project: Shred V9

FANCI ADNP2 USP7 KPNB1

4.63e-04193834c2673d86f7d7b849788036032a93a6d136a70040
ToppCellBALF-PFMC-Severe-critical_progression_d12-22_with-steroid-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c14-MKI67-CCL5_h|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)

LIG1 FANCI POLQ NCAPH

4.63e-04193834cf680afddc08b6481f1b3eee9c57acfaebeac6f0
ToppCellwk_20-22-Hematologic_Lymphocytic-T_&_ILC-Cycling_T|wk_20-22 / Celltypes from embryonic and fetal-stage human lung

LIG1 FANCI POLQ NCAPH

4.63e-0419383481e6240cffb094b2aa3684fd0889b6497f47c4f0
ToppCellwk_08-11-Hematologic-Meg-ery-Definitive_erythroblast|wk_08-11 / Celltypes from embryonic and fetal-stage human lung

RELN USP7 ABCA7 PCNT

4.63e-04193834be75abfdf5301cf33df8ee9ed92504d44fdf19a6
ToppCellcontrol-T/NK_proliferative|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class

LIG1 FANCI POLQ NCAPH

4.63e-04193834ecb4018a47d9a82bb999e0bc8b3dceabd97d1f0d
ToppCellPSB-critical-LOC-Epithelial-FOXN4+|LOC / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

LIG1 FANCI NCAPH PCNT

4.63e-04193834b7d9c5bed524423e92f01496a9f8fad11b33a3f7
ToppCellPBMC-Control-Lymphocyte-T/NK-Other_T-T/NK_proliferative|Control / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

LIG1 FANCI POLQ NCAPH

4.72e-04194834f39a471293ecc5c5967b00e772b8f48ebc9affbe
ToppCellsystemic_lupus_erythematosus-flare-Lymphocytic|systemic_lupus_erythematosus / PBMC cell types (v2) per disease, treatment status, and sex

FANCI POLQ NCAPH VCP

4.72e-0419483417af04acd54dd6a895a966cbb4422de25dc4f1e6
ToppCellPCW_13-14-Mesenchymal-Mesenchymal_cycling-mes_proliferating3_(7)|PCW_13-14 / Celltypes from embryonic and fetal-stage human lung

LIG1 FANCI POLQ NCAPH

4.72e-04194834f9070035553bc68106a9e0bdf4b507715a138aba
ToppCellsystemic_lupus_erythematosus-flare-Lymphocytic-lymphocyte-female|systemic_lupus_erythematosus / PBMC cell types (v2) per disease, treatment status, and sex

FANCI POLQ NCAPH VCP

4.72e-041948343c385d93c5fe1a7817813c492f79fdb94d887357
DrugRodeo

HDAC3 KLHDC3 HDAC8 HDAC1

3.77e-0717834CID000038078
DrugVorinostat

HDAC3 HDAC8 HDAC1

4.65e-075833DB02546
DrugAC1MQZ6I

MMP24 PAIP2 MMP15 MMP16 PCK1 HDAC1 KPNB1

6.13e-06190837CID003509873
DrugMiconazole [22916-47-8]; Down 200; 9.6uM; PC3; HT_HG-U133A

ARHGAP32 ITFG2 DSPP USP7 CPS1 DNPH1 COQ7

7.52e-061968376615_DN
DrugPimelic Acids

HDAC3 HDAC1

1.31e-052832ctd:D010867
DrugAC1NV99J

HDAC3 HDAC8 HDAC1

2.53e-0516833CID005474719
DrugMMI270

MMP24 MMP15 MMP16

3.66e-0518833CID000446504
DrugAC1L1EXH

HDAC3 HDAC8 HDAC1

3.66e-0518833CID000002992
Drugtrapoxin B

HDAC3 HDAC1

3.93e-053832ctd:C067071
Drug5,6-dimethyl-1,10-phenanthroline

DSPP CANX

3.93e-053832CID000076357
Diseasesusceptibility to mononucleosis measurement

MDN1 ANKRD50 RYR2

9.50e-0469823EFO_0008403
Diseasecolorectal cancer (is_marker_for)

HDAC3 SETD2 AMER1 HDAC1

9.77e-04157824DOID:9256 (is_marker_for)
Diseaseautosomal dominant intellectual developmental disorder (is_implicated_in)

SETD2 MED13

1.01e-0317822DOID:0060307 (is_implicated_in)
Diseasetype 1 diabetes mellitus (is_marker_for)

HDAC3 F7 HDAC1

1.07e-0372823DOID:9744 (is_marker_for)
DiseaseBardet-Biedl syndrome

TMEM67 BBS12

1.13e-0318822cv:C0752166
Diseasediabetes mellitus (biomarker_via_orthology)

MAFA F7

1.27e-0319822DOID:9351 (biomarker_via_orthology)
Diseasehypothyroidism (biomarker_via_orthology)

RELN IGFBP2 F7

1.46e-0380823DOID:1459 (biomarker_via_orthology)
Diseasequinolinic acid measurement

CNTN4 CPS1

1.55e-0321822EFO_0010528
DiseaseDown syndrome (is_marker_for)

RELN PCNT

1.70e-0322822DOID:14250 (is_marker_for)
Diseaseprostate cancer, disease progression measurement

RBBP8NL F7

2.02e-0324822EFO_0008336, MONDO_0008315

Protein segments in the cluster

PeptideGeneStartEntry
HVHEEEGILVAVGQD

DCAF4

421

Q8WV16
GGAAGRSHHLDEDEE

KCTD10

276

Q9H3F6
GEEAAGGDRLIHEQD

DNPH1

66

O43598
HTHLAEEEGEENAER

DPF1

216

Q92782
NGHLIDFDRDGDHFE

CNTN4

536

Q8IWV2
HDGLSEAAHGPEDVV

AMER1

96

Q5JTC6
EGQDHGKEDDHDSSI

DSPP

281

Q9NZW4
EPSVLEAHDQEEDGH

APBA2

171

Q99767
LLDHGAEVNHEDVDG

ANKRD50

696

Q9ULJ7
GHIDVVQVLLEHGAD

ANKRD50

1056

Q9ULJ7
EHEDGHILHAGSQDS

CER1

246

O95813
NDLVELAVGLSHGDH

BBS12

266

Q6ZW61
GEGEGHHLQHISDRE

CCNYL1

56

Q8N7R7
FGELAVHGAEHGVED

ABCA7

2071

Q8IZY2
PDGHLGAEDQRHGEE

ADNP2

981

Q6IQ32
EDVIINGHSHEDDNP

PAIP2

16

Q9BPZ3
DHIHICDGSEEENGR

PCK1

41

P35558
DLELHLGALHGQEDT

MORN1

326

Q5T089
QDIHGHLGDIDQDVE

FANCI

1051

Q9NVI1
HDGNDLFLVAVHELG

MMP24

271

Q9Y5R2
RGHVAHLEDDEGDDD

MAP4K3

406

Q8IVH8
ADDQDGDAAQHPEEH

MDN1

4961

Q9NU22
EDAVEALIGSGHHGA

MAFA

136

Q8NHW3
GHLEGADAGEEDLEQ

MID1IP1

131

Q9NPA3
IHDHENGAEDSNVAL

MAPKAPK5

376

Q8IW41
LYIDIDIHHGDGVEE

HDAC1

171

Q13547
EHLEPSHDAGREEAA

MMRN2

676

Q9H8L6
GLGVAAEDAEVHAEN

MMP15

41

P51511
DDHSEGGLVENHVDS

IGFBP2

151

P18065
HDNESEEEGGLLHIP

ARHGAP32

756

A7KAX9
EDEAGLHQSQAVHGL

PCNT

231

O95613
GHLVDDDDISDQEDH

EIPR1

311

Q53HC9
YIDIDIHHGDGVQEA

HDAC3

166

O15379
LDASGHHETLIGEEQ

ITFG2

101

Q969R8
HDLGERAGALHAQVE

MYBBP1A

891

Q9BQG0
THHGELEGDGEQGEV

RELN

41

P78509
HEEAEEDHQGVGLRG

RBBP8NL

166

Q8NC74
IDGGHAVDAAAIQDE

GAL3ST1

346

Q99999
AISEHVEDAGVHSGD

CPS1

1191

P31327
QAAHKEEDPGHALEE

GBX2

216

P52951
GHDVLRADSHEGEVA

DOK1

261

Q99704
HGTHFGDDRFEDLEE

ENTR1

91

Q96C92
PVLDEHHQGDQDGGD

POLQ

1596

O75417
HHQGDQDGGDQDERA

POLQ

1601

O75417
GESHDHDQLNDTALE

COL6A5

926

A8TX70
DEELEHHDIGLDHDA

COQ7

176

Q99807
AIVEAHDGHDDDVID

CANX

16

P27824
GHEAVELGHGEANIT

DENND5B

756

Q6ZUT9
IDHIAGDEDHTDGVV

KPNB1

801

Q14974
VEEGHTHDILAAGFD

MANEAL

306

Q5VSG8
GLGDEFDLIDHSDLH

KLHDC3

316

Q9BQ90
DLDLHHGDGVEDAFS

HDAC8

176

Q9BY41
QQHLHGSGEEEEEEE

HINFP

41

Q9BQA5
LGTGFSDEELEEHHQ

LIG1

796

P18858
HIGQHQFGEDLILED

RYR2

3111

Q92736
LDISHHEDDHEGPEL

IPO13

651

O94829
AAGHHAEVVVDPEDE

BYSL

116

Q13895
SDENENQLDGDGHEH

CNST

36

Q6PJW8
ENIQERAGGVHHDID

KIF2B

621

Q8N4N8
DAERVLAQADHELHG

PARP10

61

Q53GL7
ESPEQEGAEGHFDLH

OMD

401

Q99983
KNEEDGGADEHEHPL

MIA2

401

Q96PC5
GGADEHEHPLTSELD

MIA2

406

Q96PC5
DHGEAHVQTDIALGV

TMEM67

516

Q5HYA8
LHTGNLDGEDHAAER

MRPS24

71

Q96EL2
DELHHGFTGLDLEEQ

MEIOC

221

A2RUB1
AHIQQLSEAAGEDDH

RIMOC1

21

A6NDU8
DLEAQEEILHQEGHS

PRPF4

351

O43172
AVLGEHDLSEHDGDE

F7

266

P08709
LEVNGVALQGAEHHE

SCRIB

781

Q14160
HRHQGHGIEEDEDVS

HRC

271

P23327
EKGTHHGSRDQEDEE

HRC

506

P23327
FADLIHHDLSEEEDG

MED13

91

Q9UHV7
AGGHHNDLEDVGRDL

AARS2

111

Q5JTZ9
GAESQLDEDEHGLHT

TRAF3IP2

481

O43734
NDEPDHTAVGDHEEF

NCAPH

376

Q15003
HAGHDREDGELEDGE

ZC3H6

6

P61129
DGNDLFLVAVHELGH

MMP16

236

P51512
LEQVANETHGHVGAD

VCP

396

P55072
AGLGGHDDLHDDLQE

SLC39A7

26

Q92504
GAGVTLHEALEAADH

TKTL2

511

Q9H0I9
ELGDIYDDQGHIHLN

POLR1F

101

Q3B726
LDERGEGGHVHTSDD

SETD2

981

Q9BYW2
EEAIEHNYGGHDDDL

USP7

491

Q93009
EGVAGEEDHHDEQEE

UBR5

1576

O95071
HGEENAEAEGQHDEH

UBR5

1591

O95071
DDPGEQVLSHAHEQE

ZSCAN23

131

Q3MJ62
ADGVLSGEELHELFH

NECAB1

56

Q8N987