Cluster composition

Functions

Category	Name	IntersectionWithQuery	PValue	GenesInTerm	GenesInQuery	GenesInTermInQuery	ID
GeneOntologyBiologicalProcess	positive regulation of RNA splicing	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	1.09e-17	63	37	10	GO:0033120
GeneOntologyBiologicalProcess	positive regulation of mRNA splicing, via spliceosome	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBMX RBMY1A1 RBMY1C RBMY1F	4.55e-17	44	37	9	GO:0048026
GeneOntologyBiologicalProcess	positive regulation of mRNA processing	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBMX RBMY1A1 RBMY1C RBMY1F	1.31e-16	49	37	9	GO:0050685
GeneOntologyBiologicalProcess	regulation of mRNA splicing, via spliceosome	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	1.94e-14	129	37	10	GO:0048024
GeneOntologyBiologicalProcess	regulation of mRNA processing	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	1.52e-13	158	37	10	GO:0050684
GeneOntologyBiologicalProcess	regulation of RNA splicing	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	2.29e-12	207	37	10	GO:0043484
GeneOntologyBiologicalProcess	mRNA splicing, via spliceosome	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	5.03e-10	358	37	10	GO:0000398
GeneOntologyBiologicalProcess	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	5.03e-10	358	37	10	GO:0000377
GeneOntologyBiologicalProcess	RNA splicing, via transesterification reactions	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	5.60e-10	362	37	10	GO:0000375
GeneOntologyBiologicalProcess	positive regulation of mRNA metabolic process	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBMX RBMY1A1 RBMY1C RBMY1F	6.18e-10	259	37	9	GO:1903313
GeneOntologyBiologicalProcess	regulation of mRNA metabolic process	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	3.91e-09	443	37	10	GO:1903311
GeneOntologyBiologicalProcess	RNA splicing	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	1.29e-08	502	37	10	GO:0008380
GeneOntologyBiologicalProcess	mRNA processing	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	3.11e-08	551	37	10	GO:0006397
GeneOntologyBiologicalProcess	mRNA metabolic process	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	3.35e-06	917	37	10	GO:0016071
GeneOntologyBiologicalProcess	positive regulation of gene expression	RBMY1D RBMY1B CIRBP RBMY1E AFDN HIF1A RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	4.80e-06	1446	37	12	GO:0010628
GeneOntologyBiologicalProcess	RNA processing	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 DDX18 RBMY1C RBMY1F	4.24e-05	1500	37	11	GO:0006396
GeneOntologyBiologicalProcess	regulation of alternative mRNA splicing, via spliceosome	RBM20 RBMX RBMY1A1	1.61e-04	59	37	3	GO:0000381
GeneOntologyBiologicalProcess	gonad development	RBMY1D RBMY1B RBMY1E BRCA2 RBMY1A1	1.65e-04	292	37	5	GO:0008406
GeneOntologyBiologicalProcess	development of primary sexual characteristics	RBMY1D RBMY1B RBMY1E BRCA2 RBMY1A1	1.79e-04	297	37	5	GO:0045137
GeneOntologyBiologicalProcess	male gonad development	RBMY1D RBMY1B RBMY1E RBMY1A1	2.43e-04	171	37	4	GO:0008584
GeneOntologyBiologicalProcess	development of primary male sexual characteristics	RBMY1D RBMY1B RBMY1E RBMY1A1	2.49e-04	172	37	4	GO:0046546
GeneOntologyBiologicalProcess	alternative mRNA splicing, via spliceosome	RBM20 RBMX RBMY1A1	3.83e-04	79	37	3	GO:0000380
GeneOntologyBiologicalProcess	sex differentiation	RBMY1D RBMY1B RBMY1E BRCA2 RBMY1A1	3.92e-04	352	37	5	GO:0007548
GeneOntologyBiologicalProcess	hematopoietic progenitor cell differentiation	RBMY1D RBMY1B RBMY1E RBMY1A1	4.17e-04	197	37	4	GO:0002244
GeneOntologyBiologicalProcess	male sex differentiation	RBMY1D RBMY1B RBMY1E RBMY1A1	4.33e-04	199	37	4	GO:0046661
GeneOntologyBiologicalProcess	response to light stimulus	CIRBP TYR USP2 HIF1A BRCA2	5.68e-04	382	37	5	GO:0009416
GeneOntologyBiologicalProcess	reproductive structure development	RBMY1D RBMY1B RBMY1E BRCA2 RBMY1A1	5.75e-04	383	37	5	GO:0048608
GeneOntologyBiologicalProcess	reproductive system development	RBMY1D RBMY1B RBMY1E BRCA2 RBMY1A1	6.10e-04	388	37	5	GO:0061458
GeneOntologyBiologicalProcess	negative regulation of mRNA metabolic process	CIRBP RBM20 RBMX	1.14e-03	115	37	3	GO:1903312
GeneOntologyBiologicalProcess	negative regulation of mRNA splicing, via spliceosome	RBM20 RBMX	1.15e-03	28	37	2	GO:0048025
GeneOntologyBiologicalProcess	negative regulation of mRNA processing	RBM20 RBMX	1.23e-03	29	37	2	GO:0050686
GeneOntologyCellularComponent	spliceosomal complex	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBMX RBMY1A1 RBMY1C RBMY1F	8.06e-11	215	36	9	GO:0005681
GeneOntologyCellularComponent	nuclear protein-containing complex	RBMY1D RBMY1B CIRBP RBMY1E HIF1A BRCA2 RBMXL1 SUN2 RBMX RBMY1A1 RBMY1C RBMY1F HMGXB4	2.30e-07	1377	36	13	GO:0140513
GeneOntologyCellularComponent	male germ cell nucleus	RBMY1D RBMY1B RBMY1E RBMY1A1	1.42e-05	86	36	4	GO:0001673
GeneOntologyCellularComponent	supraspliceosomal complex	RBMXL1 RBMX	1.73e-05	4	36	2	GO:0044530
GeneOntologyCellularComponent	germ cell nucleus	RBMY1D RBMY1B RBMY1E RBMY1A1	4.17e-05	113	36	4	GO:0043073
GeneOntologyCellularComponent	ribonucleoprotein complex	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBMX RBMY1A1 RBMY1C RBMY1F	1.45e-04	1194	36	9	GO:1990904
Domain	RBM1CTR	RBMY1D RBMY1B RBMY1E RBMXL1 RBMX RBMY1A1 RBMY1F	3.42e-19	8	35	7	PF08081
Domain	RBM1CTR	RBMY1D RBMY1B RBMY1E RBMXL1 RBMX RBMY1A1 RBMY1F	3.42e-19	8	35	7	IPR012604
Domain	RRM	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 MATR3 RBMY1F	5.19e-12	217	35	10	SM00360
Domain	RRM_dom	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 MATR3 RBMY1F	8.12e-12	227	35	10	IPR000504
Domain	RRM	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 MATR3 RBMY1F	9.25e-12	230	35	10	PS50102
Domain	Nucleotide-bd_a/b_plait	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 MATR3 RBMY1F	2.88e-11	258	35	10	IPR012677
Domain	-	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX MATR3 RBMY1F	5.02e-10	244	35	9	3.30.70.330
Domain	RRM_1	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBMX RBMY1A1 RBMY1F	3.76e-09	208	35	8	PF00076
Domain	RRM_dom_euk	CIRBP RBMXL1 RBMX	1.04e-05	23	35	3	IPR003954
Domain	RRM_1	CIRBP RBMXL1 RBMX	1.04e-05	23	35	3	SM00361
Domain	Znf_C2H2_matrin	RBM20 MATR3	2.23e-04	12	35	2	IPR000690
Domain	ZF_MATRIN	RBM20 MATR3	5.12e-04	18	35	2	PS50171
Domain	ZnF_U1	RBM20 MATR3	1.34e-03	29	35	2	SM00451
Domain	Znf_U1	RBM20 MATR3	1.34e-03	29	35	2	IPR003604
Domain	Helicase_C	CHD1 DDX18	1.71e-02	107	35	2	PF00271
Domain	HELICc	CHD1 DDX18	1.71e-02	107	35	2	SM00490
Domain	Helicase_C	CHD1 DDX18	1.74e-02	108	35	2	IPR001650
Domain	HELICASE_CTER	CHD1 DDX18	1.77e-02	109	35	2	PS51194
Domain	HELICASE_ATP_BIND_1	CHD1 DDX18	1.77e-02	109	35	2	PS51192
Domain	DEXDc	CHD1 DDX18	1.77e-02	109	35	2	SM00487
Domain	Helicase_ATP-bd	CHD1 DDX18	1.80e-02	110	35	2	IPR014001
Pathway	WP_MRNA_PROCESSING	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBMX RBMY1A1 MATR3	1.34e-06	451	27	8	MM15946
Pubmed	A Y chromosome gene family with RNA-binding protein homology: candidates for the azoospermia factor AZF controlling human spermatogenesis.	RBMY1D RBMY1B RBMY1E RBMY1A1 RBMY1C RBMY1F	6.62e-18	7	37	6	8269511
Pubmed	Structure and organization of the RBMY genes on the human Y chromosome: transposition and amplification of an ancestral autosomal hnRNPG gene.	RBMY1D RBMY1B RBMY1E RBMY1A1 RBMY1C RBMY1F	8.70e-16	12	37	6	9598316
Pubmed	RBMY, a male germ cell-specific RNA-binding protein, activated in human liver cancers and transforms rodent fibroblasts.	RBMY1D RBMY1B RBMY1E RBMY1A1 RBMY1F	6.16e-15	6	37	5	15184870
Pubmed	Degeneracy in human multicopy RBM (YRRM), a candidate spermatogenesis gene.	RBMY1D RBMY1B RBMY1E RBMY1A1 RBMY1F	2.16e-14	7	37	5	8875892
Pubmed	RBMY, a probable human spermatogenesis factor, and other hnRNP G proteins interact with Tra2beta and affect splicing.	RBMY1B RBMX RBMY1A1 RBMY1C RBMY1F	1.32e-12	13	37	5	10749975
Pubmed	Evolutionary strata on the mouse X chromosome correspond to strata on the human X chromosome.	RBMY1D RBMY1B RBMY1E RBMX RBMY1A1	3.06e-12	15	37	5	14762062
Pubmed	An RBM homologue maps to the mouse Y chromosome and is expressed in germ cells.	RBMY1D RBMY1B RBMY1E RBMY1A1	5.41e-12	5	37	4	8817321
Pubmed	Human RBMY regulates germline-specific splicing events by modulating the function of the serine/arginine-rich proteins 9G8 and Tra2-{beta}.	RBMY1D RBMY1B RBMY1E RBMY1A1	5.41e-12	5	37	4	20016065
Pubmed	The role of human and mouse Y chromosome genes in male infertility.	RBMY1D RBMY1B RBMY1E RBMY1A1	5.41e-12	5	37	4	11097427
Pubmed	Rapid evolution of mouse Y centromere repeat DNA belies recent sequence stability.	RBMY1D RBMY1B RBMY1E RBMY1A1	5.41e-12	5	37	4	19737860
Pubmed	The behavior of the X- and Y-chromosomes in the oocyte during meiotic prophase in the B6.Y(TIR)sex-reversed mouse ovary.	RBMY1D RBMY1B RBMY1E RBMY1A1	1.62e-11	6	37	4	18239052
Pubmed	Identification of target messenger RNA substrates for mouse RBMY.	RBMY1D RBMY1B RBMY1E RBMY1A1	1.62e-11	6	37	4	18492746
Pubmed	Meiotic sex chromosome inactivation in male mice with targeted disruptions of Xist.	RBMY1D RBMY1B RBMY1E RBMY1A1	1.62e-11	6	37	4	12356914
Pubmed	Mouse homologues of the human AZF candidate gene RBM are expressed in spermatogonia and spermatids, and map to a Y chromosome deletion interval associated with a high incidence of sperm abnormalities.	RBMY1D RBMY1B RBMY1E RBMY1A1	1.62e-11	6	37	4	9499427
Pubmed	Does Rbmy have a role in sperm development in mice?	RBMY1D RBMY1B RBMY1E RBMY1A1	1.62e-11	6	37	4	15051956
Pubmed	RNA-binding motif protein 15 binds to the RNA transport element RTE and provides a direct link to the NXF1 export pathway.	RBMY1D RBMY1B RBMY1E RBMY1A1	3.78e-11	7	37	4	17001072
Pubmed	The roles of RNA-binding proteins in spermatogenesis and male infertility.	RBMY1D RBMY1B RBMY1E RBMY1A1	3.78e-11	7	37	4	10377282
Pubmed	Y chromosome short arm-Sxr recombination in XSxr/Y males causes deletion of Rbm and XY female sex reversal.	RBMY1D RBMY1B RBMY1E RBMY1A1	7.56e-11	8	37	4	7479793
Pubmed	Mice with Y chromosome deletion and reduced Rbm genes on a heterozygous Dazl1 null background mimic a human azoospermic factor phenotype.	RBMY1D RBMY1B RBMY1E RBMY1A1	2.27e-10	10	37	4	10601091
Pubmed	Characterisation of the coding sequence and fine mapping of the human DFFRY gene and comparative expression analysis and mapping to the Sxrb interval of the mouse Y chromosome of the Dffry gene.	RBMY1D RBMY1B RBMY1E RBMY1A1	2.27e-10	10	37	4	9384609
Pubmed	The role of Dby mRNA in early development of male mouse zygotes.	RBMY1D RBMY1B RBMY1E RBMY1A1	5.33e-10	12	37	4	20543856
Pubmed	GASZ promotes germ cell derivation from embryonic stem cells.	RBMY1D RBMY1B RBMY1E RBMY1A1	7.69e-10	13	37	4	23816659
Pubmed	Absence of mDazl produces a final block on germ cell development at meiosis.	RBMY1D RBMY1B RBMY1E RBMY1A1	1.08e-09	14	37	4	14611631
Pubmed	RBMY evolved on the Y chromosome from a ubiquitously transcribed X-Y identical gene.	RBMXL1 RBMX RBMY1A1	1.11e-09	3	37	3	10391207
Pubmed	Loss of maternal Trim28 causes male-predominant early embryonic lethality.	RBMY1D RBMY1B RBMY1E RBMY1A1	2.55e-09	17	37	4	28115466
Pubmed	Sex differences in sex chromosome gene expression in mouse brain.	RBMY1D RBMY1B RBMY1E RBMY1A1	3.28e-09	18	37	4	12023983
Pubmed	MRNIP interacts with sex body chromatin to support meiotic progression, spermatogenesis, and male fertility in mice.	RBMY1D RBMY1B RBMY1E RBMY1A1	1.59e-08	26	37	4	35920200
Pubmed	A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain.	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBMX RBMY1A1	7.38e-08	347	37	7	16033648
Pubmed	T-STAR/ETOILE: a novel relative of SAM68 that interacts with an RNA-binding protein implicated in spermatogenesis.	RBMX RBMY1A1 RBMY1C	1.32e-07	10	37	3	10332027
Pubmed	Lineage-specific biology revealed by a finished genome assembly of the mouse.	RBMY1D RBMY1B RBMY1E RBMY1A1	3.56e-07	55	37	4	19468303
Pubmed	An abundance of X-linked genes expressed in spermatogonia.	RBMY1D RBMY1B RBMY1E RBMY1A1	4.73e-07	59	37	4	11279525
Pubmed	Potential dual functional roles of the Y-linked RBMY in hepatocarcinogenesis.	RBMY1B RBMY1A1	1.10e-06	2	37	2	32473614
Pubmed	Hypoxia Inducible Factor 1α Inhibits the Expression of Immunosuppressive Tryptophan-2,3-Dioxygenase in Glioblastoma.	HIF1A TDO2	1.10e-06	2	37	2	31866995
Pubmed	MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons.	CIRBP SIK3 GPATCH8 RBMXL1 SUN2 RBMX MATR3 DDX18 HMGXB4	1.50e-06	1082	37	9	38697112
Pubmed	Haploinsufficiency of SAMD9L, an endosome fusion facilitator, causes myeloid malignancies in mice mimicking human diseases with monosomy 7.	RBMY1D RBMY1B RBMY1E RBMY1A1	3.22e-06	95	37	4	24029230
Pubmed	Transcriptional control of CBX5 by the RNA binding proteins RBMX and RBMXL1 maintains chromatin state in myeloid leukemia.	RBMXL1 RBMX	3.30e-06	3	37	2	34458856
Pubmed	RBMX is a novel hepatic transcriptional regulator of SREBP-1c gene response to high-fructose diet.	RBMXL1 RBMX	3.30e-06	3	37	2	17188681
Pubmed	The candidate spermatogenesis gene RBMY has a homologue on the human X chromosome.	RBMX RBMY1A1	3.30e-06	3	37	2	10391206
Pubmed	hnRNP-G promotes exon 7 inclusion of survival motor neuron (SMN) via direct interaction with Htra2-beta1.	RBMX RBMY1A1	3.30e-06	3	37	2	12165565
Pubmed	HIF-1α overexpression in ductal carcinoma in situ of the breast in BRCA1 and BRCA2 mutation carriers.	HIF1A BRCA2	3.30e-06	3	37	2	23409121
Pubmed	Hypoxia-inducible factor 1{alpha} is a new target of microphthalmia-associated transcription factor (MITF) in melanoma cells.	TYR HIF1A	3.30e-06	3	37	2	15983061
Pubmed	The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes.	RBMY1D RBMY1B RBMY1E RBMY1A1 RBMY1F	5.57e-06	241	37	5	12815422
Pubmed	Nuclear organization of nucleotide excision repair is mediated by RING1B dependent H2A-ubiquitylation.	RBMXL1 RBMX MATR3 DDX18	6.20e-06	112	37	4	28416769
Pubmed	VEGF, HIF-1α expression and MVD as an angiogenic network in familial breast cancer.	HIF1A BRCA2	6.60e-06	4	37	2	23326384
Pubmed	SAFB1, an RBMX-binding protein, is a newly identified regulator of hepatic SREBP-1c gene.	RBMXL1 RBMX	6.60e-06	4	37	2	19403048
Pubmed	A genome-wide homologous recombination screen identifies the RNA-binding protein RBMX as a component of the DNA-damage response.	BRCA2 RBMX	6.60e-06	4	37	2	22344029
Pubmed	RNA-binding proteins with basic-acidic dipeptide (BAD) domains self-assemble and aggregate in Alzheimer's disease.	CIRBP NKTR GPATCH8 RBMXL1 RBMX MATR3 DDX18	8.91e-06	713	37	7	29802200
Pubmed	Proteomic analysis of the cullin 4B interactome using proximity-dependent biotinylation in living cells.	CIRBP RBMXL1 RBMX MATR3	2.12e-05	153	37	4	28225217
Pubmed	Jade-1S phosphorylation induced by CK1α contributes to cell cycle progression.	GPATCH8 DDX18 HMGXB4	2.96e-05	56	37	3	26919559
Pubmed	A central chaperone-like role for 14-3-3 proteins in human cells.	CEP350 NHSL1 AFDN SIK3 N4BP3 SIPA1L1 MATR3	3.00e-05	861	37	7	36931259
Pubmed	The STUbL RNF4 regulates protein group SUMOylation by targeting the SUMO conjugation machinery.	AFDN CHD1 HIF1A GPATCH8 SUN2 GDE1 MATR3 RBAK	3.16e-05	1203	37	8	29180619
Pubmed	A mechanism for the suppression of homologous recombination in G1 cells.	USP2 BRCA2	3.95e-05	9	37	2	26649820
Pubmed	Linc01232 promotes the metastasis of pancreatic cancer by suppressing the ubiquitin-mediated degradation of HNRNPA2B1 and activating the A-Raf-induced MAPK/ERK signaling pathway.	RBMX MATR3	4.93e-05	10	37	2	32814086
Pubmed	Niche-Selective Inhibition of Pathogenic Th17 Cells by Targeting Metabolic Redundancy.	TYR HIF1A	4.93e-05	10	37	2	32615085
Pubmed	H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.	HIF1A NKTR GPATCH8 SUN2 RBMX MATR3 DDX18 HMGXB4	5.30e-05	1294	37	8	30804502
Pubmed	The Nse5/6-like SIMC1-SLF2 complex localizes SMC5/6 to viral replication centers.	AFDN CHD1 BRCA2 RBMX MATR3 DDX18 HMGXB4	5.73e-05	954	37	7	36373674
Pubmed	Human RNPS1 and its associated factors: a versatile alternative pre-mRNA splicing regulator in vivo.	NKTR GPATCH8	6.02e-05	11	37	2	14729963
Pubmed	TRIM24 is an insulin-responsive regulator of P-bodies.	RBMXL1 RBMX MATR3	8.61e-05	80	37	3	35803934
Pubmed	TRIM28-mediated nucleocapsid protein SUMOylation enhances SARS-CoV-2 virulence.	CIRBP CHD1 RBMX MATR3 DDX18	8.88e-05	430	37	5	38172120
Pubmed	Glutamine Triggers Acetylation-Dependent Degradation of Glutamine Synthetase via the Thalidomide Receptor Cereblon.	RBMXL1 RBMX MATR3	8.93e-05	81	37	3	26990986
Pubmed	Comprehensive Interactome Mapping of the DNA Repair Scaffold SLX4 Using Proximity Labeling and Affinity Purification.	CHD1 BRCA2 RBMX DDX18	9.05e-05	222	37	4	37071664
Pubmed	BPA modulates the WDR5/TET2 complex to regulate ERβ expression in eutopic endometrium and drives the development of endometriosis.	CIRBP AFDN RBMXL1 RBMX MATR3 DDX18	9.68e-05	711	37	6	33022573
Pubmed	A systems-wide screen identifies substrates of the SCFβTrCP ubiquitin ligase.	SUN2 RBMX SIPA1L1 MATR3	1.07e-04	232	37	4	25515538
Pubmed	Comparative Application of BioID and TurboID for Protein-Proximity Biotinylation.	GPATCH8 RBM20 SUN2 RBMX MATR3	1.18e-04	457	37	5	32344865
Pubmed	The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei.	CIRBP AFDN CHD1 GPATCH8 N4BP3 SUN2 SIPA1L1 HMGXB4	1.46e-04	1497	37	8	31527615
Pubmed	SIK3 is essential for chondrocyte hypertrophy during skeletal development in mice.	HIF1A SIK3	1.48e-04	17	37	2	22318228
Pubmed	Proximity interactions among centrosome components identify regulators of centriole duplication.	CEP350 NKTR SIPA1L1	1.72e-04	101	37	3	24613305
Pubmed	Next-generation sequencing to generate interactome datasets.	CIRBP HIF1A SIK3 RBMX RBMY1A1 MATR3 RBMY1F	1.80e-04	1147	37	7	21516116
Pubmed	Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy.	RBMXL1 RBMX MATR3	2.15e-04	109	37	3	29511296
Pubmed	Targeting USP10 induces degradation of oncogenic ANLN in esophageal squamous cell carcinoma.	PIGN RBMXL1 SUN2 RBMX SIPA1L1 MATR3 DDX18	3.15e-04	1257	37	7	36526897
Pubmed	Large-scale mapping of human protein-protein interactions by mass spectrometry.	CIRBP AFDN CHD1 GPATCH8 SUN2 RBMX MATR3	3.58e-04	1284	37	7	17353931
Pubmed	Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs).	MATR3 DDX18	4.09e-04	28	37	2	22178446
Pubmed	Interactome analysis of the human Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 (hMTr1) protein.	CIRBP RBMX MATR3	4.30e-04	138	37	3	30320910
Pubmed	Placental but not heart defects are associated with elevated hypoxia-inducible factor alpha levels in mice lacking prolyl hydroxylase domain protein 2.	USP2 HIF1A	4.39e-04	29	37	2	16966370
Pubmed	14-3-3 cooperates with LKB1 to regulate the activity and localization of QSK and SIK.	USP2 SIK3	4.70e-04	30	37	2	16306228
Pubmed	ZMYM3 regulates BRCA1 localization at damaged chromatin to promote DNA repair.	RBMX MATR3 HMGXB4	5.49e-04	150	37	3	28242625
Pubmed	Cold-induced protein RBM3 orchestrates neurogenesis via modulating Yap mRNA stability in cold stress.	CIRBP HIF1A	5.69e-04	33	37	2	30037926
Pubmed	MYC multimers shield stalled replication forks from RNA polymerase.	CIRBP CHD1 GPATCH8 RBMX MATR3 DDX18	5.70e-04	989	37	6	36424410
Pubmed	Proteomic characterization of chromosomal common fragile site (CFS)-associated proteins uncovers ATRX as a regulator of CFS stability.	BRCA2 RBMXL1 RBMX MATR3 DDX18	6.05e-04	652	37	5	31180492
Pubmed	SMYD3 Impedes Small Cell Lung Cancer Sensitivity to Alkylation Damage through RNF113A Methylation-Phosphorylation Cross-talk.	CHD1 SIK3 SUN2 MATR3 DDX18	6.18e-04	655	37	5	35819319
Pubmed	Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress.	SUN2 RBMX DDX18	6.50e-04	159	37	3	22751105
Pubmed	Identifying biological pathways that underlie primordial short stature using network analysis.	CEP350 AFDN CHD1 RBMX MATR3 DDX18	6.84e-04	1024	37	6	24711643
Pubmed	Charting the landscape of tandem BRCT domain-mediated protein interactions.	CEP350 CIRBP USP2 SUN2 DDX18	6.84e-04	670	37	5	22990118
Pubmed	Pro-prion, as a membrane adaptor protein for E3 ligase c-Cbl, facilitates the ubiquitination of IGF-1R, promoting melanoma metastasis.	CEP350 CIRBP NHSL1 NKTR SIK3	7.76e-04	689	37	5	36543142
Pubmed	Proteomic analysis of integrin-associated complexes identifies RCC2 as a dual regulator of Rac1 and Arf6.	CIRBP AFDN RBMX MATR3 DDX18	8.71e-04	707	37	5	19738201
Pubmed	An inducible CRISPR/Cas9 screen identifies DTX2 as a transcriptional regulator of human telomerase.	N4BP3 RBMX MATR3	9.31e-04	180	37	3	35198878
Pubmed	Targeting TRIM37-driven centrosome dysfunction in 17q23-amplified breast cancer.	CEP350 RBMX SIPA1L1	9.92e-04	184	37	3	32908313
Pubmed	Characterizing ZC3H18, a Multi-domain Protein at the Interface of RNA Production and Destruction Decisions.	CIRBP RBMXL1 RBMX MATR3 DDX18	1.01e-03	731	37	5	29298432
Pubmed	Loss of TRIM31 promotes breast cancer progression through regulating K48- and K63-linked ubiquitination of p53.	RBMXL1 RBMX MATR3 DDX18	1.02e-03	421	37	4	34650049
Interaction	RBMY1F interactions	CIRBP RBMY1E RBMX RBMY1A1 RBMY1F	5.70e-09	36	37	5	int:RBMY1F
Interaction	RBMY1E interactions	RBMY1E RBMX RBMY1F	2.28e-08	4	37	3	int:RBMY1E
Interaction	RBMY1J interactions	RBMY1E RBMX RBMY1A1 RBMY1F	2.21e-07	29	37	4	int:RBMY1J
Interaction	RBMY1A1 interactions	CIRBP RBMX RBMY1A1 RBMY1F	3.33e-07	32	37	4	int:RBMY1A1
Interaction	RBMX interactions	CIRBP RBMY1E BRCA2 RBMXL1 RBMX RBMY1A1 MATR3 RBMY1F	1.52e-06	461	37	8	int:RBMX
Interaction	MTF1 interactions	HIF1A RBMXL1 RBMX MATR3 DDX18	2.91e-06	123	37	5	int:MTF1
Interaction	PCDHB14 interactions	RBMX RBMY1A1 RBMY1F	8.56e-06	22	37	3	int:PCDHB14
Interaction	MECP2 interactions	CIRBP NKTR SIK3 GPATCH8 RBMXL1 SUN2 RBMX MATR3 DDX18 RBAK HMGXB4	1.26e-05	1287	37	11	int:MECP2
Interaction	APOBEC3C interactions	RBMX RBMY1A1 DDX18 RBMY1F RBAK	2.23e-05	187	37	5	int:APOBEC3C
Interaction	SRSF3 interactions	CIRBP CHD1 RBMXL1 RBMX RBMY1A1 MATR3 DDX18	3.94e-05	522	37	7	int:SRSF3
Interaction	CLK3 interactions	GPATCH8 RBMXL1 RBMX RBMY1A1 RBMY1F	4.86e-05	220	37	5	int:CLK3
Interaction	YWHAB interactions	CEP350 NHSL1 AFDN SIK3 N4BP3 SUN2 RBMX SIPA1L1 MATR3	6.92e-05	1014	37	9	int:YWHAB
Interaction	RASD1 interactions	RBMY1A1 MATR3 RBMY1F	8.19e-05	46	37	3	int:RASD1
Interaction	PRR3 interactions	RBMXL1 RBMX RBMY1A1 MATR3 RBMY1F	8.24e-05	246	37	5	int:PRR3
Interaction	LINC01232 interactions	RBMX MATR3	1.17e-04	9	37	2	int:LINC01232
Interaction	LNX1 interactions	CIRBP TDO2 RBM20 RBMX RBMY1A1 RBMY1F RBAK	1.33e-04	634	37	7	int:LNX1
Interaction	SNRNP40 interactions	CHD1 NKTR GPATCH8 BRCA2 RBM20 RBMX DDX18	1.37e-04	637	37	7	int:SNRNP40
Interaction	ZNF330 interactions	CHD1 GPATCH8 RBMX DDX18 RBAK HMGXB4	1.48e-04	446	37	6	int:ZNF330
Interaction	DHX8 interactions	CHD1 NKTR GPATCH8 RBMX DDX18	1.84e-04	292	37	5	int:DHX8
Interaction	FBXW11 interactions	CHD1 RBMXL1 SUN2 RBMX SIPA1L1 MATR3	2.03e-04	473	37	6	int:FBXW11
Interaction	USP21 interactions	USP2 AFDN BRCA2 SIPA1L1	2.11e-04	161	37	4	int:USP21
Interaction	DDX23 interactions	CHD1 NKTR GPATCH8 RBMX MATR3 DDX18	2.20e-04	480	37	6	int:DDX23
Interaction	RBM3 interactions	RBMX RBMY1A1 MATR3 RBMY1F	2.21e-04	163	37	4	int:RBM3
Interaction	SNRPA interactions	CIRBP NKTR RBMX RBMY1A1 MATR3 RBMY1F	2.25e-04	482	37	6	int:SNRPA
Interaction	CIRBP interactions	CIRBP RBMX RBMY1A1 RBMY1F	2.26e-04	164	37	4	int:CIRBP
Interaction	SFN interactions	CEP350 HIF1A SIK3 N4BP3 RBMX SIPA1L1 MATR3	2.29e-04	692	37	7	int:SFN
Interaction	CHD4 interactions	HIF1A SIK3 GPATCH8 BRCA2 RBMX MATR3 DDX18 HMGXB4	2.47e-04	938	37	8	int:CHD4
Interaction	HIF1AN interactions	CEP350 AFDN HIF1A SIK3 GPATCH8	2.69e-04	317	37	5	int:HIF1AN
Interaction	ZNF707 interactions	NKTR BRCA2 RBAK	4.09e-04	79	37	3	int:ZNF707
Interaction	CLK2 interactions	NKTR GPATCH8 BRCA2 RBMXL1	4.37e-04	195	37	4	int:CLK2
Cytoband	Yq11.223	RBMY1D RBMY1B RBMY1E RBMY1A1 RBMY1F	1.27e-08	93	37	5	Yq11.223
Cytoband	Ensembl 112 genes in cytogenetic band chrYq11	RBMY1D RBMY1B RBMY1E RBMY1A1 RBMY1F	5.04e-06	311	37	5	chrYq11
Cytoband	11q23.3	USP2 SIK3	1.83e-03	78	37	2	11q23.3
Cytoband	22q13.1	SUN2 HMGXB4	2.16e-03	85	37	2	22q13.1
GeneFamily	RNA binding motif containing	RBMY1D RBMY1B CIRBP RBMY1E RBMXL1 RBM20 RBMX RBMY1A1 RBMY1C RBMY1F	7.08e-14	213	24	10	725
GeneFamily	PDZ domain containing	AFDN SIPA1L1	1.72e-02	152	24	2	1220
Coexpression	CHEN_ETV5_TARGETS_TESTIS	RBMY1D RBMY1B RBMY1E RBMY1A1	1.19e-07	33	36	4	MM701
Coexpression	ZHENG_IL22_SIGNALING_DN	RBMY1D RBMY1B RBMY1E RBMY1A1	4.29e-07	45	36	4	MM763
Coexpression	DACOSTA_UV_RESPONSE_VIA_ERCC3_DN	CEP350 CHD1 HIF1A SIK3 GPATCH8 BRCA2 SIPA1L1 HMGXB4	1.68e-05	856	36	8	M4500
Coexpression	GSE3982_MEMORY_CD4_TCELL_VS_TH2_UP	CEP350 SIK3 SESN1 SUN2	1.48e-04	196	36	4	M5381
Coexpression	GSE36476_CTRL_VS_TSST_ACT_40H_MEMORY_CD4_TCELL_YOUNG_UP	CIRBP CHD1 SIK3 SUN2	1.54e-04	198	36	4	M5289
Coexpression	GSE36476_CTRL_VS_TSST_ACT_40H_MEMORY_CD4_TCELL_OLD_UP	CIRBP CHD1 NKTR SUN2	1.54e-04	198	36	4	M5299
Coexpression	ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN	RBMY1D RBMY1B TYR RBMY1E N4BP3 RBMY1A1 RBMY1F	1.59e-04	873	36	7	M16009
Coexpression	GSE39556_UNTREATED_VS_3H_POLYIC_INJ_MOUSE_NK_CELL_DN	CHD1 KRT12 HIF1A SUN2	1.60e-04	200	36	4	M9411
Coexpression	GSE14308_TH2_VS_TH17_UP	SIK3 ZFAND4 SIPA1L1 HMGXB4	1.60e-04	200	36	4	M3361
Coexpression	GSE40666_NAIVE_VS_EFFECTOR_CD8_TCELL_WITH_IFNA_STIM_90MIN_DN	AFDN N4BP3 BRCA2 RBMXL1	1.60e-04	200	36	4	M9211
ToppCell	PBMC_fresh-frozen-Mild-Moderate_convalescent_d36-51\|PBMC_fresh-frozen / Compartment, severity and other cell annotations on 10x 3' data (130k)	CIRBP NKTR SUN2 MATR3	1.27e-05	189	34	4	0e8d1be3c406d1a393e18faccfe89116a8f82bcf
ToppCell	ILEUM-inflamed-(5)_Plasma-(5)_IgA_plasma_cells\|(5)_Plasma / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)	NKTR BRCA2 SESN1 DDX18	1.27e-05	189	34	4	a0634d72bfdd5f93877724ed6480b50a3a046f71
ToppCell	PBMC_fresh-frozen-Severe-critical_progression_d12-22-Lymphocytic\|Severe-critical_progression_d12-22 / Compartment, severity and other cell annotations on 10x 3' data (130k)	CIRBP NKTR GPATCH8 MATR3	1.46e-05	196	34	4	a9157809122e6fc5783a291522f103bef30943e4
ToppCell	Mild/Remission-B_naive-4\|World / disease group and sub_cluster of B and Plasma cells(res = 0.5)	HIF1A SIPA1L1 MATR3	1.94e-04	148	34	3	dd5e1bc02824e743e1c030a303e32f27a359a8ca
ToppCell	Mild/Remission-B_naive-4\|Mild/Remission / disease group and sub_cluster of B and Plasma cells(res = 0.5)	HIF1A SIPA1L1 MATR3	2.86e-04	169	34	3	c3a6179a64589a370108fea809b157839347759c
ToppCell	Smart-seq2-tissue-resident_(Smart-seq2)-myeloid-myeloid_dendritic-CD1c-positive_myeloid_dendritic_cell\|tissue-resident_(Smart-seq2) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type	AFDN HIF1A SIPA1L1	2.91e-04	170	34	3	cc66ac6846c58be9493eb270644ee3ce0f86cfea
ToppCell	3'-Parenchyma_lung-Epithelial-Airway_ciliated-ciliated_columnar_cell_of_tracheobronchial_tree-Multiciliated_(non-nasal)-Multiciliated_(non-nasal)_L.0.3.2.1\|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	NHSL1 USP2 GLB1L2	2.96e-04	171	34	3	1854a777d9eb9d3fc3ed3632332a6f89ce8131da
ToppCell	droplet-Heart-nan-3m\|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CEP350 RBM20 MATR3	3.22e-04	176	34	3	749b47eac5436fa34e0d243ffbc6f1897f4e431e
ToppCell	PBMC_fresh-frozen-Severe-critical_convalescent_d42-56-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c08-GZMK-FOS_h\|Severe-critical_convalescent_d42-56 / Compartment, severity and other cell annotations on 10x 3' data (130k)	USP2 SESN1 MATR3	3.44e-04	180	34	3	05f14cd367021891166825a8aac171227e2bcd97
ToppCell	facs-Large_Intestine-Distal-3m-Epithelial-nan\|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HIF1A SUN2 GDE1	3.44e-04	180	34	3	a0faed4cf23f6d5e6e8f6b0284cea8a5bd0680a0
ToppCell	5'-Airway_Nasal-Immune_Myeloid-Myeloid_monocytic-classical_monocyte-Classical_monocytes-Classical_monocytes_L.1.2.0.0\|5' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	CHD1 HIF1A BEAN1	3.55e-04	182	34	3	c3eafdc11858566aa7692b2f5dbe72ac01fb769a
ToppCell	5'-Airway_Nasal-Immune_Myeloid-Myeloid_monocytic-classical_monocyte\|5' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	CHD1 HIF1A BEAN1	3.61e-04	183	34	3	4bd6883daf2dbe8c1b49b776b48d41f9890d1cb4
ToppCell	5'-Airway_Nasal-Immune_Myeloid-Myeloid_monocytic\|5' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	CHD1 HIF1A BEAN1	3.61e-04	183	34	3	cff3197e9ff401362501db2317c86adc6d24b595
ToppCell	5'-Airway_Nasal-Immune_Myeloid-Myeloid_monocytic-classical_monocyte-Classical_monocytes\|5' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	CHD1 HIF1A BEAN1	3.61e-04	183	34	3	f803dd2881ceaed6327e21a1a51bc3d3ccf4b5f8
ToppCell	3'-Broncho-tracheal-Immune_Myeloid-Myeloid_macrophage-elicited_macrophage-Monocyte-derived_macrophage-Monocyte-derived_macrophage_L.1.2.5.0\|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	HIF1A SIK3 SIPA1L1	3.67e-04	184	34	3	d1ea2b60fb1ca1a0b809d131310c43903a9e84ce
ToppCell	droplet-Marrow-nan-3m\|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation	CEP350 CHD1 MATR3	3.67e-04	184	34	3	1154a5ad7b8512272b7476f949ddac350910bfb7
ToppCell	ILEUM-inflamed-(5)_Plasma-(5)_IgM_plasma_cells\|(5)_Plasma / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)	CIRBP GPATCH8 DDX18	3.73e-04	185	34	3	26ea60b6392410fab048f2e406a9860a018429cc
ToppCell	10x5'-GI_small-bowel-Lymphocytic_T_CD4-T_CD4/CD8\|GI_small-bowel / Manually curated celltypes from each tissue	CHD1 NKTR SIK3	3.91e-04	188	34	3	ab9b725d6e0cdab8e9ddda6dee09e14730e9a578
ToppCell	Control-Myeloid-cMonocyte\|Myeloid / Disease state, Lineage and Cell class	CHD1 HIF1A SIPA1L1	3.91e-04	188	34	3	47126c371a242c937499fd278a74a882df8f759c
ToppCell	Control\|World / Disease state, Lineage and Cell class	HIF1A SIK3 SIPA1L1	3.97e-04	189	34	3	fb8dddd3b901081c6bb9ed6f32dafc5cce5f30be
ToppCell	renal_cortex_nuclei-Adult_normal_reference\|renal_cortex_nuclei / Celltypes from Cells and Nuclei per compartment and clinical group	USP2 AFDN NKTR	3.97e-04	189	34	3	a48df46274d51e84ffb40264646de7346104efb9
ToppCell	IPF-Myeloid-cMonocyte\|Myeloid / Disease state, Lineage and Cell class	CHD1 HIF1A SIPA1L1	3.97e-04	189	34	3	ad7bb3a7de8e48c145e4382f90d30bb2159c2b76
ToppCell	COPD-Myeloid-cMonocyte\|Myeloid / Disease state, Lineage and Cell class	CHD1 HIF1A SIPA1L1	3.97e-04	189	34	3	6294691231c7d38707323cf31578a107d3b2c622
ToppCell	facs-Skin-Anagen-3m\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HIF1A SESN1 SUN2	4.03e-04	190	34	3	3466cebab16964e94da130d0673fa32e7d90b5ed
ToppCell	facs-Skin-Anagen-3m-Epithelial\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HIF1A SESN1 SUN2	4.03e-04	190	34	3	888ded899f0513d41bf655896d59ae8ef74e0978
ToppCell	IPF-Myeloid-cMonocyte\|World / Disease state, Lineage and Cell class	CHD1 HIF1A SIPA1L1	4.03e-04	190	34	3	ffa890138394f579fee53fcfac6c121bf86adc26
ToppCell	IPF-Myeloid-cMonocyte\|IPF / Disease state, Lineage and Cell class	CHD1 HIF1A SIPA1L1	4.03e-04	190	34	3	a099f51f2b7618b6712af38eedd5ee64d8663a4a
ToppCell	PBMC_fresh-frozen-Mild-Moderate_progression_d12-25\|PBMC_fresh-frozen / Compartment, severity and other cell annotations on 10x 3' data (130k)	CHD1 NKTR SIK3	4.09e-04	191	34	3	1ecd9849d14d5ebf3daf610e83fb50820cafd3ed
ToppCell	Control-Myeloid-cMonocyte\|Control / Disease state, Lineage and Cell class	CHD1 HIF1A SIPA1L1	4.15e-04	192	34	3	ad04c9c4bdebf94615cee1904ca48197e62c923b
ToppCell	10x5'-lymph-node_spleen-Lymphocytic_T_CD4-T_CD4/CD8\|lymph-node_spleen / Manually curated celltypes from each tissue	CHD1 NKTR SIK3	4.15e-04	192	34	3	47646d7e4990be85072987f92bf18d52f8da752e
ToppCell	nucseq\|World / Celltype signatures by Technology, Lineage, Lineage_subclass, Celltype_group, Cell_type2	SIK3 SIPA1L1 MATR3	4.22e-04	193	34	3	779276e775cb2492e8dd36436295a536084a6415
ToppCell	BALF-PFMC-Severe-critical_progression_d12-22_with-steroid-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c01-LEF1\|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)	CIRBP SESN1 RBMX	4.22e-04	193	34	3	4e78ddc96d8e403a21c4a303b1f26512d2ac91e8
ToppCell	droplet-Tongue-TONGUE-1m-Epithelial-parabasal\|Tongue / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation	AFDN RBM20 BEAN1	4.22e-04	193	34	3	55eab7d2574e9cc2ed8f08e0a7ca7cbf90fb5818
ToppCell	facs-Skin-Anagen-3m-Epithelial-bulge_keratinocyte\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	AFDN SESN1 SUN2	4.22e-04	193	34	3	eba3c70701b051bc1ed1f4db9270cb27a77ffc3e
ToppCell	facs-Skin-Telogen-3m\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HIF1A SESN1 MATR3	4.28e-04	194	34	3	ba10fc5929649bb994c3f1d2ce6ca3167fa9b11b
ToppCell	facs-Skin-Telogen\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HIF1A SESN1 MATR3	4.28e-04	194	34	3	bafecab8d48fc94ffd93f0d054b5f32c04b6b3f6
ToppCell	facs-Skin-Anagen-3m-Epithelial-outer_bulge\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	AFDN SESN1 SUN2	4.28e-04	194	34	3	5d30d3d41d5f19cdf3077cc609aa2738762cb8c5
ToppCell	facs-Skin-Telogen-3m-Epithelial\|Skin / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HIF1A SESN1 MATR3	4.28e-04	194	34	3	4d7fc4d0a55abb3b645116d13a983bbedc55f70c
ToppCell	Control-Myeloid-cMonocyte\|World / Disease state, Lineage and Cell class	CHD1 HIF1A SIPA1L1	4.28e-04	194	34	3	f852f5258617a66a4fbd56d64c7b47272e7b8b60
ToppCell	Transplant_Alveoli_and_parenchyma-Immune-Neutrophils\|Immune / Tissue, Lineage and Cell class of Lung Cells from 10X	CHD1 HIF1A SIPA1L1	4.28e-04	194	34	3	28571cf24b8a1d0ffb716167b977d420868cc874
ToppCell	3'-Broncho-tracheal-Immune_Myeloid-Myeloid_macrophage-elicited_macrophage-Monocyte-derived_macrophage-Monocyte-derived_macrophage_L.1.2.3.0\|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5	CHD1 HIF1A SIK3	4.41e-04	196	34	3	01cea0bb0b938d0986fd2ddae06597b8af1768ee
ToppCell	H1299-infected-SARSCoV2\|infected / Cell line, Condition and Strain	CEP350 NKTR DDX18	4.48e-04	197	34	3	0fa3e4cf93e77d78b1f97b906c5b13ca741ae17e
ToppCell	COVID-19_Mild\|World / Disease group, lineage and cell class	CHD1 HIF1A NKTR	4.48e-04	197	34	3	5c33454b10023decd2f5ccda9229b6512659711e
ToppCell	facs-Trachea-3m\|Trachea / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype	HIF1A SUN2 MATR3	4.48e-04	197	34	3	e77016d64b1cac9825fec7cfe5071f1567401187
ToppCell	facs-Trachea-nan-3m\|Trachea / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation	HIF1A SUN2 MATR3	4.48e-04	197	34	3	0353d925ee4b7aefc2c51b5fab873f465cdf9ebc
ToppCell	CV-Moderate\|CV / Virus stimulation, Condition and Cluster	AFDN N4BP3 SUN2	4.48e-04	197	34	3	8747a57ded96175a8365f066101ce2af80c8081d
ToppCell	PBMC-Mild\|PBMC / Location, Disease Group, Cell group, Cell class (2021.03.09)	CHD1 HIF1A NKTR	4.54e-04	198	34	3	44417089b62056269cac38d3134ff209c05b7007
ToppCell	systemic_lupus_erythematosus-flare\|systemic_lupus_erythematosus / PBMC cell types (v2) per disease, treatment status, and sex	NKTR SUN2 RBMX	4.54e-04	198	34	3	4c93ee921d56132d80832d8e94563f32ccf13bbc
ToppCell	Parenchymal-NucSeq\|Parenchymal / Cell types per location group and 10X technology with lineage, and cell group designations	NHSL1 SIK3 SIPA1L1	4.54e-04	198	34	3	1996373bdccc55aac347d349bd22f6aad6d0c668
ToppCell	PBMC-Mild\|PBMC / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)	CHD1 HIF1A NKTR	4.54e-04	198	34	3	28ef3fc4c17dcb765537b75917f7db78baa522db
ToppCell	IPF-Endothelial-VE_Peribronchial\|Endothelial / Disease state, Lineage and Cell class	CHD1 HIF1A SIK3	4.54e-04	198	34	3	b8bd1ba268480f54451648e01631b615a3401144
ToppCell	COPD-Myeloid-Macrophage\|Myeloid / Disease state, Lineage and Cell class	NHSL1 HIF1A SIPA1L1	4.61e-04	199	34	3	1cf1b2d6debf9e3389f1829dcaa2857e9533a080
ToppCell	wk_15-18-Mesenchymal-Fibroblast-Alveolar_fibro\|wk_15-18 / Celltypes from embryonic and fetal-stage human lung	CIRBP AFDN TDO2	4.61e-04	199	34	3	6bce8e65859a35cfea1c210f9c9765952d492ed2
ToppCell	COPD-Myeloid-Macrophage\|COPD / Disease state, Lineage and Cell class	NHSL1 HIF1A SIPA1L1	4.61e-04	199	34	3	4b9c53fb4f44190d2f6ad4d52b13be01ebe4955e
ToppCell	healthy_donor\|World / Disease condition, Lineage, Cell class and subclass	CIRBP NKTR SUN2	4.68e-04	200	34	3	afd4d5609adaa470e3d880f8be4a4d55e162b3d6
ToppCell	mild\|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class	CEP350 CHD1 NKTR	4.68e-04	200	34	3	12f1685ce8f218433068e090c9d839cd5a1910bf
Drug	azafagomine	RBMY1D RBMY1B RBMY1E RBMX RBMY1A1	2.92e-08	57	36	5	CID011957435
Drug	hydantoin-5-propionic acid	RBMY1D RBMY1B RBMY1E RBMY1A1	3.09e-08	21	36	4	CID000000782
Drug	AZFd	RBMY1D RBMY1B RBMY1E RBMY1A1	4.56e-08	23	36	4	CID000196489
Drug	Vistar	RBMY1D RBMY1B RBMY1E RBMY1A1	2.99e-07	36	36	4	CID000040896
Drug	2-chlorodideoxyadenosine	RBMY1D RBMY1B RBMY1E RBMY1A1	6.22e-07	43	36	4	CID000072194
Drug	PKI166	RBMY1D RBMY1B RBMY1E RBMY1A1	9.74e-07	48	36	4	CID006918403
Drug	HgCl	RBMY1D RBMY1B RBMY1E RBMY1A1	1.06e-06	49	36	4	CID000024182
Drug	thioglycolate	RBMY1D RBMY1B RBMY1E RBMY1A1	3.76e-06	67	36	4	CID000001133
Drug	SU6668	RBMY1D RBMY1B RBMY1E RBMY1A1	4.48e-06	70	36	4	CID000206042
Drug	p11-13	RBMY1D RBMY1B RBMY1E RBMY1A1	5.91e-06	75	36	4	CID000015759
Drug	ICI 182,780; Down 200; 1uM; MCF7; HT_HG-U133A_EA	CEP350 NKTR GPATCH8 DDX18 HMGXB4	8.32e-06	177	36	5	985_DN
Drug	sodium azide	CIRBP TYR CHD1 TDO2	9.73e-06	85	36	4	CID000033557
Drug	GW8510; Down 200; 10uM; MCF7; HT_HG-U133A	CEP350 CHD1 BRCA2 GLCE HMGXB4	9.78e-06	183	36	5	7062_DN
Drug	bipy	RBMY1D RBMY1B RBMY1E RBMY1A1	1.64e-05	97	36	4	CID000001474
Drug	2-oyl	RBMY1D RBMY1B RBMY1E RBMY1A1	2.25e-05	105	36	4	CID000657137
Drug	carbonyl sulfide	RBMY1D RBMY1B RBMY1E RBMY1A1	3.32e-05	116	36	4	CID000010039
Drug	crinamine	TYR HIF1A	5.08e-05	7	36	2	CID000073620
Drug	p-tolualdehyde	TYR BEAN1	8.69e-05	9	36	2	CID000007725
Drug	oligoadenylate	RBMY1D RBMY1B RBMY1E RBMY1A1	1.08e-04	157	36	4	CID000107918
Drug	butin	TYR BEAN1	1.32e-04	11	36	2	CID000092775
Disease	skin melanoma (is_implicated_in)	TYR BRCA2	9.02e-05	14	30	2	DOID:8923 (is_implicated_in)
Disease	prostate cancer (is_implicated_in)	CHD1 HIF1A BRCA2	2.28e-04	117	30	3	DOID:10283 (is_implicated_in)
Disease	cutaneous squamous cell carcinoma	TYR BRCA2	5.17e-04	33	30	2	EFO_1001927
Disease	melanoma (is_implicated_in)	TYR BRCA2	5.49e-04	34	30	2	DOID:1909 (is_implicated_in)
Disease	Bipolar Disorder	HIF1A TDO2 BRCA2 HMGXB4	1.32e-03	477	30	4	C0005586
Disease	Malignant neoplasm of skin	TYR HIF1A	1.65e-03	59	30	2	C0007114
Disease	Skin Neoplasms	TYR HIF1A	1.65e-03	59	30	2	C0037286
Disease	prostate carcinoma	CEP350 GPATCH8 SESN1 ZFAND4 SUN2	1.89e-03	891	30	5	EFO_0001663
Disease	Major Depressive Disorder	HIF1A TDO2 GDE1	1.90e-03	243	30	3	C1269683

Protein segments in the cluster

Peptide	Gene	Start	Entry
YNYHTYEDGSDSRDK	AFDN	401	P55196
YDGYDRFEFSHSYSK	GLCE	146	O94923
SSEYTHHKSSRDYRY	CHD1	1646	O14646
AYRDYGHSRRDESYS	RBMY1A1	276	P0DJD3
AYRDYGHSRRDESYS	RBMY1B	276	A6NDE4
AYRDYGHSRRDESYS	RBMY1C	276	P0DJD4
AYRDYGHSRRDESYS	RBMY1D	276	P0C7P1
AYRDYGHSRRDESYS	RBMY1E	276	A6NEQ0
AYRDYGHSRRDESYS	RBMY1F	276	Q15415
PHSVSSYKSREDGYY	RBM20	746	Q5T481
DDGYSTKDSYSSRDY	RBMX	211	P38159
YTYRDYGHSSSRDDY	RBMX	241	P38159
DYSDHPSGGSYRDSY	RBMX	271	P38159
DYDHGSRSQESGYYD	MATR3	201	P43243
TGTADASQSDYSKYY	KRT12	166	Q99456
YEYYHALDSDHLTKT	HIF1A	276	Q16665
DKLRHDGYRSSQYYS	NHSL1	121	Q5SYE7
QRSYSDDSYSDYSDR	GPATCH8	886	Q9UKJ3
RKHSSDDYYYGDISS	HMGXB4	76	Q9UGU5
EAYKSYIRAYDSHSL	DDX18	581	Q9NVP1
EKSYYESHLGSSYIT	GDE1	306	Q9NZC3
YHSDEVYNDSGYLSK	BRCA2	1751	P51587
YDSYSESSGYKNHDR	CEP350	1526	Q5VT06
HFHDYKSDVTSYDYD	GLB1L2	331	Q8IW92
EYEHGYVSDEHTYSR	BEAN1	91	Q3B7T3
SRHFEDTSYGYKDFS	SESN1	326	Q9Y6P5
DDGYSTKDSYSSRDY	RBMXL1	211	Q96E39
YTYRDYGHSSSRDDY	RBMXL1	241	Q96E39
DYSDHPSGGSYRDSY	RBMXL1	271	Q96E39
SGYHYLRSTVSDRYK	TDO2	346	P48775
SSYDPHSRSRSYTYD	NKTR	1391	P30414
DSTGTHSLYTTYKDY	SIPA1L1	666	O43166
SLRSDAYDHYSAIYS	SIK3	366	Q9Y2K2
SGGSYRDSYDSYATH	CIRBP	156	Q14011
SSGYSSEDDYVGYSD	SUN2	131	Q9UH99
LSYYTEHYRSHSEEK	RBAK	551	Q9NYW8
SSKDLGYDYSYLQDS	TYR	441	P14679
GDHVYTYSYDAKRED	PIGN	151	O95427
SHRYAETHGCTYDYK	ZFAND4	691	Q86XD8
TYDYKSAGRRYLHEA	ZFAND4	701	Q86XD8
YTESARYTDAHYAKS	USP2	11	O75604
SFEDRYDYYSKAEAH	LEG1	221	Q6P5S2
ADYATLYYREHSRAG	N4BP3	81	O15049