Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctioncholesterol-protein transferase activity

DHH SHH IHH

2.33e-083583GO:0140853
GeneOntologyMolecularFunctionpatched binding

DHH SHH IHH

1.29e-068583GO:0005113
GeneOntologyMolecularFunctionalkaline phosphatase activity

ALPI ALPG

1.23e-046582GO:0004035
GeneOntologyMolecularFunctionzinc ion binding

PRICKLE4 DHH TADA2B SHH CPB1 MMP19 KNG1 ALPI ALPG

1.00e-03891589GO:0008270
GeneOntologyMolecularFunctiontransition metal ion binding

PRICKLE4 DHH TADA2B PEPD SHH CPB1 MMP19 KNG1 ALPI ALPG

2.06e-0311895810GO:0046914
GeneOntologyMolecularFunctionpeptidase activity

DHH PEPD USP7 SHH CPB1 IHH MMP19

2.76e-03654587GO:0008233
GeneOntologyBiologicalProcesspositive regulation of mRNA splicing, via spliceosome

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B RBMY1E

3.38e-1144587GO:0048026
GeneOntologyBiologicalProcesspositive regulation of mRNA processing

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B RBMY1E

7.49e-1149587GO:0050685
GeneOntologyBiologicalProcesspositive regulation of RNA splicing

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B RBMY1E

4.68e-1063587GO:0033120
GeneOntologyBiologicalProcessregulation of mRNA processing

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B SAFB2 RBMY1E

1.37e-08158588GO:0050684
GeneOntologyBiologicalProcessintein-mediated protein splicing

DHH SHH IHH

2.11e-083583GO:0016539
GeneOntologyBiologicalProcessprotein splicing

DHH SHH IHH

2.11e-083583GO:0030908
GeneOntologyBiologicalProcessregulation of mRNA splicing, via spliceosome

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B RBMY1E

7.33e-08129587GO:0048024
GeneOntologyBiologicalProcessregulation of RNA splicing

RBMXL3 RBMY1A1 RBMY1C TADA2B RBMY1F RBMY1D RBMY1B RBMY1E

1.12e-07207588GO:0043484
GeneOntologyBiologicalProcessmale sex differentiation

DHH RBMY1A1 RBMY1D RBMY1B SAFB2 RBMY1E SHH

1.39e-06199587GO:0046661
GeneOntologyBiologicalProcessmRNA processing

RBMXL3 WDR33 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B SAFB2 RBMY1E PRMT7

2.81e-065515810GO:0006397
GeneOntologyBiologicalProcessregulation of mRNA metabolic process

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B SAFB2 RBMY1E E2F1

3.76e-06443589GO:1903311
GeneOntologyBiologicalProcessmRNA splicing, via spliceosome

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B RBMY1E PRMT7

6.85e-06358588GO:0000398
GeneOntologyBiologicalProcessRNA splicing, via transesterification reactions with bulged adenosine as nucleophile

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B RBMY1E PRMT7

6.85e-06358588GO:0000377
GeneOntologyBiologicalProcessRNA splicing, via transesterification reactions

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B RBMY1E PRMT7

7.43e-06362588GO:0000375
GeneOntologyBiologicalProcesspositive regulation of smoothened signaling pathway

DHH SKOR2 SHH IHH

7.69e-0645584GO:0045880
GeneOntologyBiologicalProcesspositive regulation of mRNA metabolic process

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B RBMY1E

7.90e-06259587GO:1903313
GeneOntologyBiologicalProcessmale gonad development

DHH RBMY1A1 RBMY1D RBMY1B SAFB2 RBMY1E

8.42e-06171586GO:0008584
GeneOntologyBiologicalProcessdevelopment of primary male sexual characteristics

DHH RBMY1A1 RBMY1D RBMY1B SAFB2 RBMY1E

8.71e-06172586GO:0046546
GeneOntologyBiologicalProcessself proteolysis

DHH SHH IHH

9.37e-0615583GO:0097264
GeneOntologyBiologicalProcessRNA splicing

RBMXL3 RBMY1A1 RBMY1C TADA2B RBMY1F RBMY1D RBMY1B RBMY1E PRMT7

1.03e-05502589GO:0008380
GeneOntologyBiologicalProcesscell fate specification

OLIG3 DHH SHH IHH OLIG2

2.47e-05123585GO:0001708
GeneOntologyBiologicalProcessmRNA metabolic process

RBMXL3 WDR33 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B SAFB2 RBMY1E E2F1 PRMT7

4.23e-059175811GO:0016071
GeneOntologyBiologicalProcesssex differentiation

DHH RBMY1A1 RBMY1D RBMY1B SAFB2 RBMY1E SHH

5.65e-05352587GO:0007548
GeneOntologyBiologicalProcessprotein autoprocessing

DHH SHH IHH

8.12e-0530583GO:0016540
GeneOntologyBiologicalProcessreproductive structure development

DHH RBMY1A1 RBMY1D RBMY1B SAFB2 RBMY1E SHH

9.59e-05383587GO:0048608
GeneOntologyBiologicalProcessreproductive system development

DHH RBMY1A1 RBMY1D RBMY1B SAFB2 RBMY1E SHH

1.04e-04388587GO:0061458
GeneOntologyBiologicalProcessneuron fate commitment

OLIG3 SHH IHH OLIG2

1.25e-0491584GO:0048663
GeneOntologyBiologicalProcessdevelopmental process involved in reproduction

CCNYL1 DHH WDR33 RBMY1A1 RBMY1D RBMY1B SAFB2 RBMY1E SHH IHH PRMT7 PGM3

1.38e-0412355812GO:0003006
GeneOntologyBiologicalProcessgonad development

DHH RBMY1A1 RBMY1D RBMY1B SAFB2 RBMY1E

1.67e-04292586GO:0008406
GeneOntologyBiologicalProcessdevelopment of primary sexual characteristics

DHH RBMY1A1 RBMY1D RBMY1B SAFB2 RBMY1E

1.83e-04297586GO:0045137
GeneOntologyBiologicalProcessspinal cord motor neuron differentiation

OLIG3 SHH OLIG2

2.08e-0441583GO:0021522
GeneOntologyBiologicalProcessregulation of smoothened signaling pathway

DHH SKOR2 SHH IHH

2.18e-04105584GO:0008589
GeneOntologyBiologicalProcesshematopoietic progenitor cell differentiation

RBMY1A1 RBMY1D RBMY1B RBMY1E SHH

2.30e-04197585GO:0002244
GeneOntologyBiologicalProcesscoenzyme A catabolic process

ALPI ALPG

2.76e-049582GO:0015938
GeneOntologyBiologicalProcessregulation of cerebellar granule cell precursor proliferation

SKOR2 SHH

3.45e-0410582GO:0021936
GeneOntologyBiologicalProcesscentral nervous system neuron differentiation

OLIG3 SKOR2 SLC4A10 SHH OLIG2

3.58e-04217585GO:0021953
GeneOntologyBiologicalProcessventral spinal cord development

OLIG3 SHH OLIG2

5.54e-0457583GO:0021517
GeneOntologyBiologicalProcessnegative regulation of T cell differentiation in thymus

SHH IHH

5.94e-0413582GO:0033085
GeneOntologyBiologicalProcesspositive regulation of T cell differentiation in thymus

SHH IHH

5.94e-0413582GO:0033089
GeneOntologyBiologicalProcesscell differentiation in spinal cord

OLIG3 SHH OLIG2

7.43e-0463583GO:0021515
GeneOntologyBiologicalProcessregulation of neuroblast proliferation

SKOR2 HAPLN4 SHH

8.90e-0467583GO:1902692
GeneOntologyBiologicalProcessthalamus development

SHH OLIG2

9.09e-0416582GO:0021794
GeneOntologyBiologicalProcesscell proliferation in external granule layer

SKOR2 SHH

9.09e-0416582GO:0021924
GeneOntologyBiologicalProcesscerebellar granule cell precursor proliferation

SKOR2 SHH

9.09e-0416582GO:0021930
GeneOntologyBiologicalProcessregulation of immature T cell proliferation in thymus

SHH IHH

1.03e-0317582GO:0033084
GeneOntologyBiologicalProcessregulation of immature T cell proliferation

SHH IHH

1.16e-0318582GO:0033083
GeneOntologyBiologicalProcesscell proliferation in hindbrain

SKOR2 SHH

1.16e-0318582GO:0021534
GeneOntologyBiologicalProcessimmature T cell proliferation in thymus

SHH IHH

1.29e-0319582GO:0033080
GeneOntologyBiologicalProcessnucleoside bisphosphate catabolic process

ALPI ALPG

1.29e-0319582GO:0033869
GeneOntologyBiologicalProcessribonucleoside bisphosphate catabolic process

ALPI ALPG

1.29e-0319582GO:0034031
GeneOntologyBiologicalProcesspurine nucleoside bisphosphate catabolic process

ALPI ALPG

1.29e-0319582GO:0034034
GeneOntologyBiologicalProcessimmature T cell proliferation

SHH IHH

1.43e-0320582GO:0033079
GeneOntologyBiologicalProcesssmoothened signaling pathway

DHH SKOR2 SHH IHH

1.52e-03176584GO:0007224
GeneOntologyBiologicalProcessembryonic digestive tract morphogenesis

SHH IHH

1.58e-0321582GO:0048557
GeneOntologyCellularComponentspliceosomal complex

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B RBMY1E

1.89e-06215577GO:0005681
GeneOntologyCellularComponentmale germ cell nucleus

RBMY1A1 RBMY1D RBMY1B RBMY1E

8.93e-0586574GO:0001673
GeneOntologyCellularComponentgerm cell nucleus

RBMY1A1 RBMY1D RBMY1B RBMY1E

2.56e-04113574GO:0043073
GeneOntologyCellularComponentmyofibril

PRICKLE4 PDE4DIP HRC ALPI ALPG

8.81e-04273575GO:0030016
GeneOntologyCellularComponentcontractile muscle fiber

PRICKLE4 PDE4DIP HRC ALPI ALPG

1.15e-03290575GO:0043292
GeneOntologyCellularComponentextracellular matrix

FRAS1 HAPLN4 SHH IHH COLQ MMP19 KNG1

1.97e-03656577GO:0031012
GeneOntologyCellularComponentexternal encapsulating structure

FRAS1 HAPLN4 SHH IHH COLQ MMP19 KNG1

2.00e-03658577GO:0030312
MousePhenoannular pancreas

SHH IHH

2.90e-053442MP:0006261
MousePhenothin interparietal bone

SHH MN1

2.90e-053442MP:0030277
DomainRBM1CTR

RBMY1A1 RBMY1F RBMY1D RBMY1B RBMY1E

1.35e-118585PF08081
DomainRBM1CTR

RBMY1A1 RBMY1F RBMY1D RBMY1B RBMY1E

1.35e-118585IPR012604
DomainHedgehog_sig/DD-Pept_Zn-bd_dom

DHH SHH IHH

2.84e-083583IPR009045
DomainHedgehog_signalling_dom

DHH SHH IHH

2.84e-083583IPR000320
DomainHintN

DHH SHH IHH

2.84e-083583SM00306
DomainHintC

DHH SHH IHH

2.84e-083583SM00305
DomainHedgehog

DHH SHH IHH

2.84e-083583IPR001657
DomainHint_dom

DHH SHH IHH

2.84e-083583IPR001767
Domain-

DHH SHH IHH

2.84e-0835833.30.1380.10
DomainHint_dom_N

DHH SHH IHH

2.84e-083583IPR003587
DomainHint_dom_C

DHH SHH IHH

2.84e-083583IPR003586
DomainHH_signal

DHH SHH IHH

2.84e-083583PF01085
DomainHint

DHH SHH IHH

2.84e-083583PF01079
Domain-

DHH SHH IHH

1.13e-0745832.170.16.10
DomainHedgehog/Intein_dom

DHH SHH IHH

1.13e-074583IPR028992
DomainRRM_1

RBMXL3 RBMY1A1 RBMY1F RBMY1D RBMY1B SAFB2 RBMY1E

3.57e-06208587PF00076
DomainRRM

RBMXL3 RBMY1A1 RBMY1F RBMY1D RBMY1B SAFB2 RBMY1E

4.72e-06217587SM00360
DomainRRM_dom

RBMXL3 RBMY1A1 RBMY1F RBMY1D RBMY1B SAFB2 RBMY1E

6.34e-06227587IPR000504
DomainRRM

RBMXL3 RBMY1A1 RBMY1F RBMY1D RBMY1B SAFB2 RBMY1E

6.91e-06230587PS50102
DomainINTEIN_N_TER

SHH IHH

9.48e-062582PS50817
DomainIntein_N

SHH IHH

9.48e-062582IPR006141
DomainNucleotide-bd_a/b_plait

RBMXL3 RBMY1A1 RBMY1F RBMY1D RBMY1B SAFB2 RBMY1E

1.46e-05258587IPR012677
DomainAlk_phosphatase

ALPI ALPG

5.66e-054582PF00245
DomainAlkaline_phosphatase_AS

ALPI ALPG

5.66e-054582IPR018299
DomainAlkaline_phosphatase

ALPI ALPG

5.66e-054582IPR001952
DomainalkPPc

ALPI ALPG

5.66e-054582SM00098
DomainALKALINE_PHOSPHATASE

ALPI ALPG

5.66e-054582PS00123
Domain-

RBMXL3 RBMY1F RBMY1D RBMY1B SAFB2 RBMY1E

1.07e-042445863.30.70.330
DomainAlkaline_phosphatase_core

ALPI ALPG

4.16e-0331582IPR017850
DomainAlkaline_Pase-like_a/b/a

ALPI ALPG

4.16e-0331582IPR017849
Domain-

ALPI ALPG

4.16e-03315823.40.720.10
DomainTPR

SH3TC1 TTC31 TONSL

7.53e-03129583SM00028
DomainRossmann-like_a/b/a_fold

GMPS CARS1

7.89e-0343582IPR014729
Domain-

GMPS CARS1

7.89e-03435823.40.50.620
DomainTPR_repeat

SH3TC1 TTC31 TONSL

8.19e-03133583IPR019734
PathwayKEGG_MEDICUS_REFERENCE_HEDGEHOG_SIGNALING_PATHWAY_HH_LIGAND_SECRETION

DHH SHH IHH

4.89e-076423M47892
PathwayREACTOME_RELEASE_OF_HH_NP_FROM_THE_SECRETING_CELL

DHH SHH IHH

8.54e-077423MM15187
PathwayREACTOME_LIGAND_RECEPTOR_INTERACTIONS

DHH SHH IHH

8.54e-077423MM15224
PathwayREACTOME_RELEASE_OF_HH_NP_FROM_THE_SECRETING_CELL

DHH SHH IHH

1.36e-068423M27444
PathwayREACTOME_LIGAND_RECEPTOR_INTERACTIONS

DHH SHH IHH

1.36e-068423M27496
PathwayKEGG_MEDICUS_REFERENCE_HEDGEHOG_SIGNALING_PATHWAY_PTCH_CORECEPTOR

DHH SHH IHH

2.04e-069423M47893
PathwayKEGG_MEDICUS_REFERENCE_HEDGEHOG_SIGNALING_PATHWAY

DHH SHH IHH

8.75e-0614423M47414
PathwayREACTOME_ACTIVATION_OF_SMO

DHH SHH IHH

8.75e-0614423MM15228
PathwayWP_HEDGEHOG_SIGNALING_WP47

DHH SHH IHH

1.34e-0516423M39675
PathwayREACTOME_ACTIVATION_OF_SMO

DHH SHH IHH

1.95e-0518423M27500
PathwayPID_HEDGEHOG_2PATHWAY

DHH SHH IHH

3.64e-0522423M211
PathwayWP_HEDGEHOG_SIGNALING_PATHWAY

DHH SHH IHH

3.64e-0522423MM15924
PathwayREACTOME_FORMATION_OF_LATERAL_PLATE_MESODERM

SHH IHH

8.62e-055422M46432
PathwayWP_HEDGEHOG_SIGNALING_WP4249

DHH SHH IHH

2.79e-0443423M39706
PathwayKEGG_FOLATE_BIOSYNTHESIS

ALPI ALPG

4.69e-0411422M2220
PathwayKEGG_HEDGEHOG_SIGNALING_PATHWAY

DHH SHH IHH

6.11e-0456423M1053
PathwayREACTOME_HEDGEHOG_LIGAND_BIOGENESIS

DHH SHH IHH

8.23e-0462423MM15181
PathwayREACTOME_HEDGEHOG_LIGAND_BIOGENESIS

DHH SHH IHH

9.45e-0465423M27439
PathwayREACTOME_DIGESTION

ALPI ALPG

1.76e-0321422MM15526
PathwayREACTOME_HEDGEHOG_ON_STATE

DHH SHH IHH

1.79e-0381423MM15225
PathwayWP_MRNA_PROCESSING

RBMXL3 RBMY1A1 RBMY1D RBMY1B SAFB2 RBMY1E

2.05e-03451426MM15946
PathwayREACTOME_HEDGEHOG_ON_STATE

DHH SHH IHH

2.12e-0386423M27497
Pubmed

A Y chromosome gene family with RNA-binding protein homology: candidates for the azoospermia factor AZF controlling human spermatogenesis.

RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B RBMY1E

1.28e-1675968269511
Pubmed

Structure and organization of the RBMY genes on the human Y chromosome: transposition and amplification of an ancestral autosomal hnRNPG gene.

RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B RBMY1E

1.68e-14125969598316
Pubmed

RBMY, a male germ cell-specific RNA-binding protein, activated in human liver cancers and transforms rodent fibroblasts.

RBMY1A1 RBMY1F RBMY1D RBMY1B RBMY1E

7.08e-14659515184870
Pubmed

Degeneracy in human multicopy RBM (YRRM), a candidate spermatogenesis gene.

RBMY1A1 RBMY1F RBMY1D RBMY1B RBMY1E

2.47e-1375958875892
Pubmed

An RBM homologue maps to the mouse Y chromosome and is expressed in germ cells.

RBMY1A1 RBMY1D RBMY1B RBMY1E

3.73e-1155948817321
Pubmed

Human RBMY regulates germline-specific splicing events by modulating the function of the serine/arginine-rich proteins 9G8 and Tra2-{beta}.

RBMY1A1 RBMY1D RBMY1B RBMY1E

3.73e-11559420016065
Pubmed

The role of human and mouse Y chromosome genes in male infertility.

RBMY1A1 RBMY1D RBMY1B RBMY1E

3.73e-11559411097427
Pubmed

Rapid evolution of mouse Y centromere repeat DNA belies recent sequence stability.

RBMY1A1 RBMY1D RBMY1B RBMY1E

3.73e-11559419737860
Pubmed

The behavior of the X- and Y-chromosomes in the oocyte during meiotic prophase in the B6.Y(TIR)sex-reversed mouse ovary.

RBMY1A1 RBMY1D RBMY1B RBMY1E

1.12e-10659418239052
Pubmed

Identification of target messenger RNA substrates for mouse RBMY.

RBMY1A1 RBMY1D RBMY1B RBMY1E

1.12e-10659418492746
Pubmed

Meiotic sex chromosome inactivation in male mice with targeted disruptions of Xist.

RBMY1A1 RBMY1D RBMY1B RBMY1E

1.12e-10659412356914
Pubmed

Mouse homologues of the human AZF candidate gene RBM are expressed in spermatogonia and spermatids, and map to a Y chromosome deletion interval associated with a high incidence of sperm abnormalities.

RBMY1A1 RBMY1D RBMY1B RBMY1E

1.12e-1065949499427
Pubmed

Does Rbmy have a role in sperm development in mice?

RBMY1A1 RBMY1D RBMY1B RBMY1E

1.12e-10659415051956
Pubmed

RNA-binding motif protein 15 binds to the RNA transport element RTE and provides a direct link to the NXF1 export pathway.

RBMY1A1 RBMY1D RBMY1B RBMY1E

2.60e-10759417001072
Pubmed

The roles of RNA-binding proteins in spermatogenesis and male infertility.

RBMY1A1 RBMY1D RBMY1B RBMY1E

2.60e-10759410377282
Pubmed

Y chromosome short arm-Sxr recombination in XSxr/Y males causes deletion of Rbm and XY female sex reversal.

RBMY1A1 RBMY1D RBMY1B RBMY1E

5.20e-1085947479793
Pubmed

Mice with Y chromosome deletion and reduced Rbm genes on a heterozygous Dazl1 null background mimic a human azoospermic factor phenotype.

RBMY1A1 RBMY1D RBMY1B RBMY1E

1.56e-091059410601091
Pubmed

Characterisation of the coding sequence and fine mapping of the human DFFRY gene and comparative expression analysis and mapping to the Sxrb interval of the mouse Y chromosome of the Dffry gene.

RBMY1A1 RBMY1D RBMY1B RBMY1E

1.56e-09105949384609
Pubmed

The role of Dby mRNA in early development of male mouse zygotes.

RBMY1A1 RBMY1D RBMY1B RBMY1E

3.66e-091259420543856
Pubmed

[Hedgehog signaling pathway and its impact on development of cancer therapy].

DHH SHH IHH

4.64e-09359318788453
Pubmed

The adventures of Sonic Hedgehog in development and repair. I. Hedgehog signaling in gastrointestinal development and disease.

DHH SHH IHH

4.64e-09359318063705
Pubmed

The hedgehog signaling pathway in the mouse ovary.

DHH SHH IHH

4.64e-09359317392501
Pubmed

The world according to hedgehog.

DHH SHH IHH

4.64e-0935939009843
Pubmed

Hedgehog signal transduction: from flies to vertebrates.

DHH SHH IHH

4.64e-09359310579908
Pubmed

A new role for Hedgehogs in juxtacrine signaling.

DHH SHH IHH

4.64e-09359324342078
Pubmed

Hedgehog-induced survival of B-cell chronic lymphocytic leukemia cells in a stromal cell microenvironment: a potential new therapeutic target.

DHH SHH IHH

4.64e-09359319074837
Pubmed

Evolution of the hedgehog gene family.

DHH SHH IHH

4.64e-0935938849902
Pubmed

Comparative biological responses to human Sonic, Indian, and Desert hedgehog.

DHH SHH IHH

4.64e-09359311472839
Pubmed

GASZ promotes germ cell derivation from embryonic stem cells.

RBMY1A1 RBMY1D RBMY1B RBMY1E

5.28e-091359423816659
Pubmed

RBMY, a probable human spermatogenesis factor, and other hnRNP G proteins interact with Tra2beta and affect splicing.

RBMY1A1 RBMY1C RBMY1F RBMY1B

5.28e-091359410749975
Pubmed

Absence of mDazl produces a final block on germ cell development at meiosis.

RBMY1A1 RBMY1D RBMY1B RBMY1E

7.38e-091459414611631
Pubmed

Pth1r in Neural Crest Cells Regulates Nasal Cartilage Differentiation.

DHH SHH E2F1 IHH

1.01e-081559438234039
Pubmed

Evolutionary strata on the mouse X chromosome correspond to strata on the human X chromosome.

RBMY1A1 RBMY1D RBMY1B RBMY1E

1.01e-081559414762062
Pubmed

Loss of maternal Trim28 causes male-predominant early embryonic lethality.

RBMY1A1 RBMY1D RBMY1B RBMY1E

1.75e-081759428115466
Pubmed

Expression of Sonic hedgehog and its putative role as a precursor cell mitogen in the developing mouse retina.

DHH SHH IHH

1.85e-0845939053312
Pubmed

Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity.

DHH SHH IHH

1.85e-0845937916661
Pubmed

Sex differences in sex chromosome gene expression in mouse brain.

RBMY1A1 RBMY1D RBMY1B RBMY1E

2.24e-081859412023983
Pubmed

Developmental pathways in breast cancer and breast tumor-initiating cells: therapeutic implications.

DHH SHH IHH

4.63e-08559322123293
Pubmed

Hedgehog signal activation coordinates proliferation and differentiation of fetal liver progenitor cells.

DHH SHH IHH

4.63e-08559319559697
Pubmed

Vertebrate Hedgehog signalling modulated by induction of a Hedgehog-binding protein.

DHH SHH IHH

4.63e-08559310050855
Pubmed

All mammalian Hedgehog proteins interact with cell adhesion molecule, down-regulated by oncogenes (CDO) and brother of CDO (BOC) in a conserved manner.

DHH SHH IHH

4.63e-08559320519495
Pubmed

Products, genetic linkage and limb patterning activity of a murine hedgehog gene.

DHH SHH IHH

4.63e-0855937720571
Pubmed

Hedgehog and patched gene expression in adult ocular tissues.

DHH SHH IHH

4.63e-0855939237688
Pubmed

Hedgehog signaling regulates the generation of ameloblast progenitors in the continuously growing mouse incisor.

DHH SHH IHH

9.24e-08659320978073
Pubmed

Hedgehog and Bmp genes are coexpressed at many diverse sites of cell-cell interaction in the mouse embryo.

DHH SHH IHH

9.24e-0865937589793
Pubmed

MRNIP interacts with sex body chromatin to support meiotic progression, spermatogenesis, and male fertility in mice.

RBMY1A1 RBMY1D RBMY1B RBMY1E

1.09e-072659435920200
Pubmed

Disruption of Scube2 Impairs Endochondral Bone Formation.

DHH SHH IHH

1.62e-07759325639508
Pubmed

Characterization of two patched receptors for the vertebrate hedgehog protein family.

DHH SHH IHH

1.62e-0775939811851
Pubmed

Defects in mouse mammary gland development caused by conditional haploinsufficiency of Patched-1.

DHH SHH IHH

2.58e-07859310529434
Pubmed

Basal cell carcinoma preferentially arises from stem cells within hair follicle and mechanosensory niches.

DHH SHH IHH

3.87e-07959325842978
Pubmed

Gli3Xt-J/Xt-J mice exhibit lambdoid suture craniosynostosis which results from altered osteoprogenitor proliferation and differentiation.

DHH SHH IHH

3.87e-07959320570969
Pubmed

Hedgehog induction of murine vasculogenesis is mediated by Foxf1 and Bmp4.

DHH SHH IHH

3.87e-07959317881493
Pubmed

Ectodysplasin and Wnt pathways are required for salivary gland branching morphogenesis.

DHH SHH IHH

5.52e-071059321652647
Pubmed

Indian hedgehog activates hematopoiesis and vasculogenesis and can respecify prospective neurectodermal cell fate in the mouse embryo.

DHH SHH IHH

5.52e-071059311311154
Pubmed

Analysis of Nsdhl-deficient embryos reveals a role for Hedgehog signaling in early placental development.

DHH SHH IHH

7.58e-071159317028112
Pubmed

Indian hedgehog signaling from endothelial cells is required for sclera and retinal pigment epithelium development in the mouse eye.

DHH SHH IHH

1.01e-061259318582859
Pubmed

Cloning, expression, and chromosomal location of SHH and IHH: two human homologues of the Drosophila segment polarity gene hedgehog.

DHH SHH IHH

1.01e-06125937590746
Pubmed

A YY1-dependent increase in aerobic metabolism is indispensable for intestinal organogenesis.

SHH ALPI ALPG

1.01e-061259327802136
Pubmed

Hedgehog signaling regulates differentiation from double-negative to double-positive thymocyte.

DHH SHH IHH

1.01e-061259310981962
Pubmed

Expression patterns of Hedgehog signalling pathway members during mouse palate development.

DHH SHH IHH

1.31e-061359316168717
Pubmed

Ptch2/Gas1 and Ptch1/Boc differentially regulate Hedgehog signalling in murine primordial germ cell migration.

DHH SHH IHH

1.31e-061359332332736
Pubmed

Interaction between hedgehog signalling and PAX6 dosage mediates maintenance and regeneration of the corneal epithelium.

DHH SHH IHH

1.31e-061359322275805
Pubmed

Hedgehog signaling regulates sensory cell formation and auditory function in mice and humans.

DHH SHH IHH

1.31e-061359318632939
Pubmed

Cytoneme signaling provides essential contributions to mammalian tissue patterning.

OLIG3 SHH OLIG2

1.67e-061459338171360
Pubmed

Genetic interaction between Gli3 and Ezh2 during limb pattern formation.

DHH SHH IHH

1.67e-061459329729398
Pubmed

Lineage specification of ovarian theca cells requires multicellular interactions via oocyte and granulosa cells.

DHH SHH IHH

2.08e-061559325917826
Pubmed

Lineage-specific biology revealed by a finished genome assembly of the mouse.

RBMY1A1 RBMY1D RBMY1B RBMY1E

2.39e-065559419468303
Pubmed

GATA4 and GATA6 regulate pancreatic endoderm identity through inhibition of hedgehog signaling.

DHH SHH IHH

2.56e-061659326932670
Pubmed

Disruption of a hedgehog-foxf1-rspo2 signaling axis leads to tracheomalacia and a loss of sox9+ tracheal chondrocytes.

SHH E2F1 IHH

2.56e-061659333328171
Pubmed

Differentiation of insulin-producing cells from human neural progenitor cells.

DHH IHH OLIG2

2.56e-061659315839736
Pubmed

Reproductive, Physiological, and Molecular Outcomes in Female Mice Deficient in Dhh and Ihh.

DHH IHH

2.83e-06259229788357
Pubmed

Potential dual functional roles of the Y-linked RBMY in hepatocarcinogenesis.

RBMY1A1 RBMY1B

2.83e-06259232473614
Pubmed

Basal cell carcinoma pathogenesis and therapy involving hedgehog signaling and beyond.

SHH IHH

2.83e-06259228574612
Pubmed

Opposite expression patterns of Sonic hedgehog and Indian hedgehog are associated with aberrant methylation status of their promoters in colorectal cancers.

SHH IHH

2.83e-06259220854074
Pubmed

Combining hedgehog signaling inhibition with focal irradiation on reduction of pancreatic cancer metastasis.

SHH IHH

2.83e-06259223468532
Pubmed

Cholesterol modification of hedgehog signaling proteins in animal development.

SHH IHH

2.83e-0625928824192
Pubmed

Hedgehog signaling in mouse ovary: Indian hedgehog and desert hedgehog from granulosa cells induce target gene expression in developing theca cells.

DHH IHH

2.83e-06259215878962
Pubmed

Hedgehog can drive terminal differentiation of amniote slow skeletal muscle.

SHH IHH

2.83e-06259215238161
Pubmed

New insight into hedgehog signaling in hematological malignancies.

SHH IHH

2.83e-06259224991722
Pubmed

The Hedgehog signalling pathway mediates drug response of MCF-7 mammosphere cells in breast cancer patients.

SHH IHH

2.83e-06259226201092
Pubmed

Silencing of sodium-hydrogen exchanger 1 attenuates the proliferation, hypertrophy, and migration of pulmonary artery smooth muscle cells via E2F1.

SLC9A1 E2F1

2.83e-06259221454803
Pubmed

Differential requirements for shh in mammary tissue and hair follicle morphogenesis.

SHH IHH

2.83e-06259212217324
Pubmed

Indian hedgehog in craniofacial neural crest cells links to skeletal malocclusion by regulating associated cartilage formation and gene expression.

E2F1 IHH

2.83e-06259232223017
Pubmed

Hedgehog signaling regulates expansion of pancreatic epithelial cells.

SHH IHH

2.83e-06259215766752
Pubmed

Expression of Semaphorin 4F in neurons and brain oligodendrocytes and the regulation of oligodendrocyte precursor migration in the optic nerve.

SEMA4F OLIG2

2.83e-06259221945643
Pubmed

Gorlin syndrome-derived induced pluripotent stem cells are hypersensitive to hedgehog-mediated osteogenic induction.

SHH IHH

2.83e-06259229088246
Pubmed

Distinct expression patterns of hedgehog ligands between cultured and primary colorectal cancers are associated with aberrant methylation of their promoters.

SHH IHH

2.83e-06259219856079
Pubmed

Novel neutralizing hedgehog antibody MEDI-5304 exhibits antitumor activity by inhibiting paracrine hedgehog signaling.

SHH IHH

2.83e-06259224344235
Pubmed

IHH, SHH, and primary cilia mediate epithelial-stromal cross-talk during decidualization in mice.

SHH IHH

2.83e-06259236853961
Pubmed

Usp7 promotes medulloblastoma cell survival and metastasis by activating Shh pathway.

USP7 SHH

2.83e-06259228137592
Pubmed

Hedgehog-dependent regulation of angiogenesis and myogenesis is impaired in aged mice.

DHH SHH

2.83e-06259224135022
Pubmed

Myomegalin regulates Hedgehog pathway by controlling PDE4D at the centrosome.

PDE4DIP SHH

2.83e-06259234260267
Pubmed

Nhe1 is a luminal Na+/H+ exchanger in mouse choroid plexus and is targeted to the basolateral membrane in Ncbe/Nbcn2-null mice.

SLC9A1 SLC4A10

2.83e-06259219369449
Pubmed

Widespread requirement for Hedgehog ligand stimulation in growth of digestive tract tumours.

SHH IHH

2.83e-06259214520411
Pubmed

Mechanism of USP7/HAUSP activation by its C-terminal ubiquitin-like domain and allosteric regulation by GMP-synthetase.

GMPS USP7

2.83e-06259221981925
Pubmed

Increased production of sonic hedgehog by ballooned hepatocytes.

SHH IHH

2.83e-06259221547909
Pubmed

Overactivation of hedgehog signaling alters development of the ovarian vasculature in mice.

DHH SHH IHH

3.10e-061759322402963
Pubmed

Centrosomal protein DZIP1 regulates Hedgehog signaling by promoting cytoplasmic retention of transcription factor GLI3 and affecting ciliogenesis.

DHH SHH IHH

3.10e-061759323955340
Pubmed

An abundance of X-linked genes expressed in spermatogonia.

RBMY1A1 RBMY1D RBMY1B RBMY1E

3.17e-065959411279525
Pubmed

Keratan Sulfate Regulates the Switch from Motor Neuron to Oligodendrocyte Generation During Development of the Mouse Spinal Cord.

OLIG3 SHH OLIG2

3.72e-061859326869039
InteractionHHIP interactions

DHH USP7 SHH IHH

1.28e-0810584int:HHIP
InteractionPTCH2 interactions

DHH SHH IHH

2.49e-0520583int:PTCH2
CytobandYq11.223

RBMY1A1 RBMY1F RBMY1D RBMY1B RBMY1E

1.40e-0793595Yq11.223
CytobandEnsembl 112 genes in cytogenetic band chrYq11

RBMY1A1 RBMY1F RBMY1D RBMY1B RBMY1E

5.13e-05311595chrYq11
Cytoband3q24

GMPS CPB1

7.37e-04315923q24
Cytoband22q12.1

MN1 SEZ6L

7.86e-043259222q12.1
Cytoband2p13.1

SEMA4F TTC31

8.87e-04345922p13.1
Cytoband4p16.1

SH3TC1 TADA2B

4.69e-03795924p16.1
GeneFamilyRNA binding motif containing

RBMXL3 RBMY1A1 RBMY1C RBMY1F RBMY1D RBMY1B SAFB2 RBMY1E

3.31e-08213438725
GeneFamilyAlkaline phosphatases

ALPI ALPG

3.31e-0544321072
CoexpressionCHEN_ETV5_TARGETS_TESTIS

RBMY1A1 RBMY1D RBMY1B RBMY1E

8.42e-0733584MM701
CoexpressionZHENG_IL22_SIGNALING_DN

RBMY1A1 RBMY1D RBMY1B RBMY1E

3.00e-0645584MM763
ToppCellfacs-Marrow-KLS-18m-Myeloid-granulocyte_monocyte_progenitor_cell|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MLKL PRMT7 RETSAT MMP19 PGM3

4.41e-06193565f92bbe70e6c725bfb8c08bfc2a94e375528151a3
ToppCellfacs-Marrow-KLS-18m-Myeloid-granulocyte_monocyte_progenitor_cell|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

MLKL PRMT7 RETSAT MMP19 PGM3

4.41e-0619356544ba79db566d0fa3bbcfe3adf9164bf8c3cb0bc3
Drughydantoin-5-propionic acid

RBMY1A1 RBMY1D RBMY1B RBMY1E

2.20e-0721584CID000000782
DrugAZFd

RBMY1A1 RBMY1D RBMY1B RBMY1E

3.24e-0723584CID000196489
DrugVistar

RBMY1A1 RBMY1D RBMY1B RBMY1E

2.10e-0636584CID000040896
Drug2-chlorodideoxyadenosine

RBMY1A1 RBMY1D RBMY1B RBMY1E

4.34e-0643584CID000072194
Drugbipy

RBMY1A1 RBMY1D RBMY1B RBMY1E ALPI

4.85e-0697585CID000001474
DrugPKI166

RBMY1A1 RBMY1D RBMY1B RBMY1E

6.78e-0648584CID006918403
Drug2-oyl

RBMY1A1 RBMY1D RBMY1B SAFB2 RBMY1E

7.15e-06105585CID000657137
DrugHgCl

RBMY1A1 RBMY1D RBMY1B RBMY1E

7.37e-0649584CID000024182
DrugButylparaben [94-26-8]; Up 200; 20.6uM; PC3; HT_HG-U133A

HOXD1 PDE4DIP ZNF223 KNG1 ALPI SEZ6L

1.02e-051955864647_UP
Drugtriparanol

DHH SHH IHH ALPI

1.09e-0554584CID000006536
Drugazafagomine

RBMY1A1 RBMY1D RBMY1B RBMY1E

1.35e-0557584CID011957435
Drugthioglycolate

RBMY1A1 RBMY1D RBMY1B RBMY1E

2.58e-0567584CID000001133
DrugAY9944

DHH SHH IHH

2.68e-0523583CID000009704
DrugAC1LXO3B

DHH SHH IHH

2.68e-0523583CID001356208
DrugSU6668

RBMY1A1 RBMY1D RBMY1B RBMY1E

3.07e-0570584CID000206042
Drugp11-13

RBMY1A1 RBMY1D RBMY1B RBMY1E

4.03e-0575584CID000015759
DrugAC1NS51S

DHH SHH IHH

4.91e-0528583CID005354165
Drug8-dehydrocholesterol

DHH SHH IHH

4.91e-0528583CID000129846
DrugHi-5

DHH SHH IHH

8.88e-0534583CID005288553
DrugAC1L1JOO

DHH SHH IHH

9.69e-0535583CID000005137
DrugBeta-Escin [11072-93-8]; Down 200; 3.2uM; MCF7; HT_HG-U133A

SEMA4F PDE4DIP USP7 GCNT2 PRMT7

1.26e-041915853890_DN
DrugButoconazole nitrate [32872-77-1]; Down 200; 8.4uM; MCF7; HT_HG-U133A

SEMA4F SLC9A1 PDE4DIP E2F1 GCNT2

1.39e-041955855388_DN
DrugTicarcillin sodium [4697-14-7]; Down 200; 9.4uM; HL60; HT_HG-U133A

RPAP1 SH3TC1 WDR33 COLQ MMP19

1.39e-041955856146_DN
DrugAminohippuric acid [61-78-9]; Down 200; 20.6uM; HL60; HT_HG-U133A

SLC9A1 WDR33 PDE4DIP SAFB2 MMP19

1.42e-041965853076_DN
DrugPralidoxime chloride [51-15-0]; Down 200; 23.2uM; HL60; HT_HG-U133A

RPAP1 WDR33 PDE4DIP COLQ MMP19

1.42e-041965853066_DN
DrugHexetidine [141-94-6]; Down 200; 11.8uM; HL60; HT_HG-U133A

SLC9A1 HOXD1 E2F1 IHH MMP19

1.46e-041975852457_DN
DrugEtofylline [519-37-9]; Down 200; 17.8uM; MCF7; HT_HG-U133A

SEMA4F SLC9A1 SAFB2 PRMT7 MMP19

1.49e-041985855467_DN
DrugPirenperone [ 75444-65-4]; Up 200; 10.2uM; MCF7; HT_HG-U133A

RPAP1 HOXD1 SH3TC1 IHH PURG

1.49e-041985855639_UP
Drugfelodipine; Down 200; 10uM; MCF7; HG-U133A

PDE4DIP MMP19 MN1 PGM3 SEZ6L

1.53e-04199585337_DN
DrugEburnamonine (-) [4880-88-0]; Up 200; 13.6uM; HL60; HG-U133A

SEMA4F HOXD1 TTC31 PPFIA4 ZNF223

1.56e-042005851788_UP
Diseaseprimary bacterial infectious disease (implicated_via_orthology)

DHH SHH IHH

4.56e-079533DOID:0050338 (implicated_via_orthology)
Diseaseautism spectrum disorder (is_marker_for)

SHH IHH

6.61e-057532DOID:0060041 (is_marker_for)
DiseasePain, Migratory

SLC9A1 HOXD1 KNG1

9.51e-0549533C0751407
DiseaseSuffering, Physical

SLC9A1 HOXD1 KNG1

9.51e-0549533C0751408
DiseasePain, Crushing

SLC9A1 HOXD1 KNG1

9.51e-0549533C0458259
DiseasePain, Splitting

SLC9A1 HOXD1 KNG1

9.51e-0549533C0458257
DiseasePain

SLC9A1 HOXD1 KNG1

9.51e-0549533C0030193
DiseaseRadiating pain

SLC9A1 HOXD1 KNG1

9.51e-0549533C0234254
DiseasePain, Burning

SLC9A1 HOXD1 KNG1

9.51e-0549533C0234230
DiseaseAche

SLC9A1 HOXD1 KNG1

9.51e-0549533C0234238
Diseasebrain age measurement

SHH RNF157

5.89e-0420532EFO_0010602
DiseaseEdema

SLC9A1 KNG1

1.00e-0326532C0013604
DiseaseAnasarca

SLC9A1 KNG1

1.00e-0326532C0151603
Diseaseeye measurement

SEMA4F ZNF469

1.08e-0327532EFO_0004731
Diseaseattention deficit hyperactivity disorder, bipolar disorder

DHH SLC4A10

1.42e-0331532EFO_0003888, MONDO_0004985
Diseaselateral ventricle volume measurement

SLC9A1 OLIG2

1.61e-0333532EFO_0008487

Protein segments in the cluster

PeptideGeneStartEntry
YHDADGHFHLIDGDK

PGM3

286

O95394
LDGKEVIHLEAGGYH

ALS2

556

Q96Q42
AELDFGEGEGHHLQH

CCNYL1

51

Q8N7R7
LSALAHHYGLDRGVE

EFCC1

31

Q9HA90
DGYGEALGRDHSEHL

RBMY1A1

371

P0DJD3
DGYGEALGRDHSEHL

RBMY1B

371

A6NDE4
DGYGEALGRDHSEHL

RBMY1C

371

P0DJD4
DGYGEALGRDHSEHL

RBMY1D

371

P0C7P1
DGYGEALGRDHSEHL

RBMY1E

371

A6NEQ0
DGYGEALGRDHSEHL

RBMY1F

371

Q15415
HGLGHFLGIDVHDVG

PEPD

366

P12955
HRAYCGDGHRHEGVE

COLQ

401

Q9Y215
LDELSRGLLHYAHDG

FRAS1

1281

Q86XX4
LGRAADDGGSHVHYA

HOXD1

121

Q9GZZ0
MEDRHGGCHGHYVHG

GCNT2

331

Q8N0V5
LRDYAGNLHESGVHG

PPFIA4

1046

O75335
AHEVGHALGLGHSRY

MMP19

211

Q99542
GLYRLHHSEAPELHG

MLKL

316

Q8NB16
RLVGEIYGGHHSAFH

OLIG3

146

Q7RTU3
YLFVEGGRIDHGHHE

ALPI

326

P09923
GGRIDHGHHEGVAYQ

ALPI

331

P09923
FLFVEGGRIDHGHHE

ALPG

326

P10696
GGRIDHGHHESRAYR

ALPG

331

P10696
HDGQLYCGRHHAELL

PRICKLE4

131

Q2TBC4
ENAGGDLKDGHHHYE

GMPS

11

P49915
HEALDYHFGLEEGEG

E2F1

406

Q01094
IGEGALPSYEHAHRH

PRMT7

151

Q9NVM4
EDGHHAQDSLHYEGR

DHH

131

O43323
KYHVDHHRYLGGDGL

DEGS2

126

Q6QHC5
HYEAAAHGHDGVRLK

HAPLN4

71

Q86UW8
DDLEHQGGHVLDHGH

KNG1

481

P01042
ALASAHHGGEHFEGE

CPB1

11

P15086
DGHHSEESLHYEGRA

IHH

136

Q14623
YAHLGLKGHRQEHGH

PURG

126

Q9UJV8
EPYGFHARGHSELHA

MN1

66

Q10571
RGACYGADHDLGRLH

RETSAT

531

Q6NUM9
SGGVAHFHCHLGYEL

SEZ6L

411

Q9BYH1
DEGDEYFGHCHVLLG

RNF157

206

Q96PX1
DGHHSEESLHYEGRA

SHH

131

Q15465
DIHGGGFDLRFPHHD

CARS1

361

P49589
DVLYLGTEDGHLHRA

SEMA4F

451

O95754
FSAGAEIGHHRRYHG

TADA2B

36

Q86TJ2
LQHRLGHGELAEHFY

SH3TC1

1201

Q8TE82
RLVSEIYGGHHAGFH

OLIG2

171

Q13516
HILRHGHRGHDGEDD

HRC

176

P23327
DYGGLHHAAARISGD

MTRF1

231

O75570
GLDLHHRAHTGERPY

ZNF223

386

Q9UK11
VGGHYEENRGHSLDA

RBMXL3

506

Q8N7X1
EGRPHGEHEYHLGRS

SYNGAP1

91

Q96PV0
HQLGELLAGHGRYAE

TONSL

31

Q96HA7
LHGEYVGRACGHDHP

SLC4A10

706

Q6U841
HHHYGGLFAGAEERS

ZNF281

146

Q9Y2X9
LTGIEDICGHYGHHH

SLC9A1

531

P19634
MGDHRDGQHYGDDRH

SAFB2

791

Q14151
LGLHHHGEEAERAGY

RPAP1

376

Q9BWH6
HLLEGRKAGGGSYHH

SKOR2

606

Q2VWA4
YPEHGELLAHLGGAH

ZNF469

3346

Q96JG9
DGEHHDGYHRDEPFG

WDR33

1281

Q9C0J8
HNYGGHDDDLSVRHC

USP7

496

Q93009
HHDYLLGHLDDEGKS

TTC31

76

Q49AM3
HGRHVIGHIDDYSAL

PDE4DIP

2176

Q5VU43