Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctionRNA polymerase II transcription regulatory region sequence-specific DNA binding

BHLHE23 CEBPB SALL3 NACC2 MTF1 HMX3 MAZ TPRX1 SOX18 DMRTB1 INSM2 SALL4 DLX4 FOXI3 NFAT5 ZNF865 RFXAP DMBX1 TCF7L1 FOXK1 FOXF2 FOXE3

7.81e-0814598322GO:0000977
GeneOntologyMolecularFunctionDNA-binding transcription factor activity, RNA polymerase II-specific

BHLHE23 CEBPB SALL3 NACC2 MTF1 HMX3 MAZ TPRX1 SOX18 DMRTB1 INSM2 SALL4 DLX4 FOXI3 NFAT5 RFXAP DMBX1 TCF7L1 FOXK1 FOXF2 FOXE3

2.10e-0714128321GO:0000981
GeneOntologyMolecularFunctionRNA polymerase II cis-regulatory region sequence-specific DNA binding

BHLHE23 CEBPB SALL3 NACC2 MTF1 MAZ TPRX1 SOX18 DMRTB1 INSM2 SALL4 DLX4 FOXI3 NFAT5 ZNF865 TCF7L1 FOXK1 FOXF2 FOXE3

6.06e-0712448319GO:0000978
GeneOntologyMolecularFunctioncis-regulatory region sequence-specific DNA binding

BHLHE23 CEBPB SALL3 NACC2 MTF1 MAZ TPRX1 SOX18 DMRTB1 INSM2 SALL4 DLX4 FOXI3 NFAT5 ZNF865 TCF7L1 FOXK1 FOXF2 FOXE3

8.39e-0712718319GO:0000987
GeneOntologyMolecularFunctionactinin binding

LDB3 MICALL2 PKD2

7.58e-0443833GO:0042805
GeneOntologyMolecularFunctionlarge ribosomal subunit rRNA binding

RPLP0 RPLP0P6

9.16e-0411832GO:0070180
GeneOntologyBiologicalProcessnegative regulation of transcription by RNA polymerase II

CRY2 SAMD1 CEBPB NACC2 MAZ CXXC5 SMARCC2 SOX18 INSM2 SALL4 DLX4 CBX4 DMBX1 FOXK1 SCAF4

1.10e-0510538015GO:0000122
GeneOntologyBiologicalProcessnegative regulation of DNA-templated transcription

CRY2 SAMD1 CEBPB NACC2 MAZ CXXC5 SMARCC2 SOX18 INSM2 SALL4 DLX4 CBX4 DMBX1 TCF7L1 FOXK1 FOXF2 SCAF4

2.10e-0513998017GO:0045892
GeneOntologyBiologicalProcessnegative regulation of RNA biosynthetic process

CRY2 SAMD1 CEBPB NACC2 MAZ CXXC5 SMARCC2 SOX18 INSM2 SALL4 DLX4 CBX4 DMBX1 TCF7L1 FOXK1 FOXF2 SCAF4

2.38e-0514138017GO:1902679
GeneOntologyBiologicalProcessmRNA transcription by RNA polymerase II

TAF4 TAF4B TAF5 FOXE3

4.93e-0552804GO:0042789
GeneOntologyBiologicalProcessmRNA transcription

TAF4 TAF4B TAF5 FOXE3

7.09e-0557804GO:0009299
GeneOntologyBiologicalProcesspositive regulation of transcription by RNA polymerase II

BHLHE23 CEBPB MTF1 MAZ PKD2 CHCHD2 SOX18 SALL4 MAML2 TAF4 TAF4B TAF5 NFAT5 RFXAP TCF7L1 FOXF2

7.33e-0513908016GO:0045944
GeneOntologyCellularComponenttranscription regulator complex

CRY2 CEBPB SOX18 INSM2 SALL4 TAF4 TAF4B TAF5 NFAT5 RFXAP DMBX1 TCF7L1 FOXF2 FOXE3

8.72e-085968314GO:0005667
GeneOntologyCellularComponentchromatin

BHLHE23 CEBPB NACC2 HMX3 TPRX1 SMARCC2 SOX18 DMRTB1 SALL4 DLX4 TAF4 TAF5 NFAT5 DMBX1 TCF7L1 FOXK1 FOXF2 FOXE3

1.61e-0514808318GO:0000785
GeneOntologyCellularComponentmCRD-mediated mRNA stability complex

PABPC3 PABPC1

2.31e-046832GO:0106002
GeneOntologyCellularComponentRNA polymerase II transcription regulator complex

CEBPB TAF4 TAF4B TAF5 RFXAP TCF7L1

7.50e-04272836GO:0090575
GeneOntologyCellularComponenttranscription factor TFIID complex

TAF4 TAF4B TAF5

8.63e-0447833GO:0005669
GeneOntologyCellularComponentnuclear protein-containing complex

CRY2 SART3 CEBPB AMOT PABPC3 CAMSAP3 SMARCC2 CBX4 TAF4 TAF4B TAF5 RFXAP PABPC1 TCF7L1

9.87e-0413778314GO:0140513
MousePhenopostnatal lethality

SAMD1 LDB3 MEX3A CEBPB SNAP91 ADRM1 NISCH HMX3 MAZ CAMSAP3 PKD2 SMARCC2 SOX18 SALL4 GNAS FOXI3 NFAT5 ALDH5A1 DMBX1 FOXF2

1.53e-0710846920MP:0002082
MousePhenopostnatal lethality, incomplete penetrance

SAMD1 LDB3 MEX3A CEBPB SNAP91 NISCH HMX3 MAZ CAMSAP3 PKD2 SOX18 SALL4 GNAS NFAT5 DMBX1

6.89e-076696915MP:0011086
MousePhenolethality during fetal growth through weaning, incomplete penetrance

SAMD1 LDB3 MEX3A CEBPB SNAP91 NISCH HMX3 MAZ CAMSAP3 PKD2 SMARCC2 SOX18 SALL4 GNAS TOPORS NFAT5 DMBX1 TCF7L1

5.72e-0611246918MP:0011112
MousePhenopostnatal growth retardation

LDB3 IRS4 MEX3A SNAP91 NISCH HMX3 ACSS1 APC2 PKD2 GNAS STAM NFAT5 DMBX1 FOXF2

8.39e-058816914MP:0001732
MousePhenoabnormal postnatal growth

LDB3 IRS4 MEX3A SNAP91 NISCH HMX3 ACSS1 APC2 PKD2 GNAS STAM NFAT5 DMBX1 FOXF2

1.14e-049076914MP:0001731
DomainTAF4

TAF4 TAF4B

1.90e-052822PF05236
DomainTAF4

TAF4 TAF4B

1.90e-052822IPR007900
DomainTF_fork_head_CS_2

FOXI3 FOXK1 FOXF2 FOXE3

4.89e-0546824IPR030456
DomainTF_fork_head_CS_1

FOXI3 FOXK1 FOXF2 FOXE3

5.33e-0547824IPR018122
DomainFH

FOXI3 FOXK1 FOXF2 FOXE3

6.29e-0549824SM00339
DomainFORK_HEAD_1

FOXI3 FOXK1 FOXF2 FOXE3

6.29e-0549824PS00657
DomainFORK_HEAD_2

FOXI3 FOXK1 FOXF2 FOXE3

6.29e-0549824PS00658
DomainFork_head_dom

FOXI3 FOXK1 FOXF2 FOXE3

6.29e-0549824IPR001766
DomainFORK_HEAD_3

FOXI3 FOXK1 FOXF2 FOXE3

6.29e-0549824PS50039
DomainForkhead

FOXI3 FOXK1 FOXF2 FOXE3

6.29e-0549824PF00250
DomainTAFH

TAF4 TAF4B

1.89e-045822SM00549
DomainPolyA

PABPC3 PABPC1

1.89e-045822SM00517
Domain-

PABPC3 PABPC1

1.89e-0458221.10.1900.10
DomainPABP

PABPC3 PABPC1

1.89e-045822PF00658
DomainTAFH

TAF4 TAF4B

1.89e-045822PS51119
DomainPABC

PABPC3 PABPC1

1.89e-045822PS51309
DomainPABP_1234

PABPC3 PABPC1

1.89e-045822IPR006515
DomainPABP_HYD

PABPC3 PABPC1

1.89e-045822IPR002004
DomainTAFH

TAF4 TAF4B

1.89e-045822PF07531
DomainTAFH_NHR1

TAF4 TAF4B

1.89e-045822IPR003894
Domain-

SNAP91 STAM SCAF4

1.97e-04268231.25.40.90
DomainENTH_VHS

SNAP91 STAM SCAF4

2.74e-0429823IPR008942
DomainRRM_1

SART3 PABPC3 PABPC1 RBM38 SCAF4

2.22e-03208825PF00076
DomainRRM

SART3 PABPC3 PABPC1 RBM38 SCAF4

2.67e-03217825SM00360
Domain-

SMARCC2 FOXI3 FOXK1 FOXF2 FOXE3

2.73e-032188251.10.10.10
DomainRRM_dom

SART3 PABPC3 PABPC1 RBM38 SCAF4

3.24e-03227825IPR000504
DomainRRM

SART3 PABPC3 PABPC1 RBM38 SCAF4

3.43e-03230825PS50102
DomainZnf_C2H2_jaz

ZFR GPATCH8

4.15e-0322822IPR022755
Domainzf-C2H2_jaz

ZFR GPATCH8

4.15e-0322822PF12171
DomainWHTH_DNA-bd_dom

SMARCC2 FOXI3 FOXK1 FOXF2 FOXE3

4.25e-03242825IPR011991
Domain-

SART3 PABPC3 PABPC1 RBM38 SCAF4

4.40e-032448253.30.70.330
DomainRRM_dom_euk

PABPC3 PABPC1

4.54e-0323822IPR003954
DomainRRM_1

PABPC3 PABPC1

4.54e-0323822SM00361
Pubmed

A census of human transcription factors: function, expression and evolution.

BHLHE23 CEBPB MTF1 HMX3 MAZ TPRX1 SOX18 DMRTB1 DLX4 FOXI3 NFAT5 DMBX1 TCF7L1 FOXK1 FOXF2 FOXE3

4.98e-10908841619274049
Pubmed

The Nse5/6-like SIMC1-SLF2 complex localizes SMC5/6 to viral replication centers.

SART3 IRS4 SALL3 RPLP0 SNAP91 RPLP0P6 PABPC3 MAZ SMARCC2 DIDO1 ZFR CBX4 TAF4 PABPC1 SCAF4

8.53e-09954841536373674
Pubmed

Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders.

IQSEC3 SNAP91 PABPC3 NISCH CASKIN1 APC2 CAMSAP3 SMARCC2 DGKI DIDO1 ZFR TAF4 TAF5 PABPC1 PCDH8

9.66e-09963841528671696
Pubmed

TAF4 inactivation reveals the 3 dimensional growth promoting activities of collagen 6A3.

COL6A3 TAF4 TAF4B

1.36e-08384324498316
Pubmed

Human TAFII 105 is a cell type-specific TFIID subunit related to hTAFII130.

TAF4 TAF4B TAF5

2.70e-0768438858156
Pubmed

Human transcription factor protein interaction networks.

IRS4 RFLNB ADRM1 PABPC3 MAZ SMARCC2 DIDO1 ZFR TAF4 GPATCH8 TAF5 GTPBP1 RFXAP PABPC1 FOXK1 SCAF4

2.77e-071429841635140242
Pubmed

KCTD13-mediated ubiquitination and degradation of GluN1 regulates excitatory synaptic transmission and seizure susceptibility.

SART3 IQSEC3 RPLP0 GUCY1A2 SNAP91 EPB41L4B AMOT PABPC3 NISCH CASKIN1 CAMSAP3 SYN2 SMARCC2 DLST GTPBP1 PABPC1

2.82e-071431841637142655
Pubmed

A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract.

LDB3 MTF1 HMX3 SOX18 DIDO1 ZFR DLX4 NFAT5 DMBX1 TCF7L1 FOXK1

1.13e-06709841122988430
Pubmed

The Tumor Suppressor CIC Directly Regulates MAPK Pathway Genes via Histone Deacetylation.

IRS4 CEBPB RPLP0 MAZ TAF4 TAF5 GTPBP1 NFAT5 ZNF865 FOXK1

1.47e-06583841029844126
Pubmed

Interaction with 14-3-3 adaptors regulates the sorting of hMex-3B RNA-binding protein to distinct classes of RNA granules.

MEX3A MEX3D PABPC1

2.94e-061284318779327
Pubmed

An Oct4-centered protein interaction network in embryonic stem cells.

SALL3 CAMSAP3 CXXC5 SMARCC2 SALL4 TAF4

3.34e-0616784620362541
Pubmed

Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus.

LDB3 HMX3 SOX18 DMBX1 TCF7L1 FOXK1 FOXF2

3.60e-0626384720932939
Pubmed

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.

SART3 MEX3A RPLP0 MAZ MEX3D DIDO1 ZFR GPATCH8 PABPC1 RBM38 SCAF4

3.91e-06807841122681889
Pubmed

The DNA sequence and comparative analysis of human chromosome 20.

BHLHE23 CEBPB ADRM1 ACSS1 SOX18 DIDO1 TAF4 GNAS RBM38

4.53e-0651784911780052
Pubmed

mTORC1 activity regulates post-translational modifications of glycine decarboxylase to modulate glycine metabolism and tumorigenesis.

SART3 IRS4 AMOT SMARCC2 ZFR GTPBP1 PABPC1

4.71e-0627484734244482
Pubmed

Characterization of two cytoplasmic poly(A)-binding proteins, PABPC1 and PABPC2, in mouse spermatogenic cells.

PABPC3 PABPC1

5.76e-06284219020299
Pubmed

Structural changes in TAF4b-TFIID correlate with promoter selectivity.

TAF4 TAF4B

5.76e-06284218206971
Pubmed

Functional compensation for the loss of testis-specific poly(A)-binding protein, PABPC2, during mouse spermatogenesis.

PABPC3 PABPC1

5.76e-06284226971890
Pubmed

Molecular cloning and analysis of two subunits of the human TFIID complex: hTAFII130 and hTAFII100.

TAF4 TAF5

5.76e-0628428942982
Pubmed

Levels of free PABP are limited by newly polyadenylated mRNA in early Spisula embryogenesis.

PABPC3 PABPC1

5.76e-06284210954604
Pubmed

The promoter of the Poly(A) binding protein 2 (Pabp2) retroposon is derived from the 5'-untranslated region of the Pabp1 progenitor gene.

PABPC3 PABPC1

5.76e-06284210534404
Pubmed

The mouse gene encoding the testis-specific isoform of Poly(A) binding protein (Pabp2) is an expressed retroposon: intimations that gene expression in spermatogenic cells facilitates the creation of new genes.

PABPC3 PABPC1

5.76e-0628429732454
Pubmed

Dual function of MAZ mediated by FOXF2 in basal-like breast cancer: Promotion of proliferation and suppression of progression.

MAZ FOXF2

5.76e-06284228577976
Pubmed

Nucleotide sequence of a mouse testis poly(A) binding protein cDNA.

PABPC3 PABPC1

5.76e-0628421630930
Pubmed

Developmental expression of poly(A) binding protein mRNAs during spermatogenesis in the mouse.

PABPC3 PABPC1

5.76e-0628427893484
Pubmed

CCT3 acts upstream of YAP and TFCP2 as a potential target and tumour biomarker in liver cancer.

IRS4 RPLP0 RPLP0P6 AMOT PABPC3 GNAS PABPC1

6.52e-0628884731501420
Pubmed

Impact of cytosine methylation on DNA binding specificities of human transcription factors.

BHLHE23 CEBPB MTF1 SOX18 DLX4 NFAT5 DMBX1 TCF7L1 FOXK1

6.82e-0654484928473536
Pubmed

SRCAP complex promotes lung cancer progression by reprograming the oncogenic transcription of Hippo-YAP/TAZ signaling pathway.

IRS4 RFLNB AMOT DIDO1 NAA30 ZFR TAF4 TAF5 SCAF4

7.34e-0654984938280479
Pubmed

Mutations in the carboxy-terminal domain of TBP affect the synthesis of human immunodeficiency virus type 1 full-length and short transcripts similarly.

TAF4 TAF4B TAF5

7.44e-06168438764009
Pubmed

Direct interaction of human TFIID with the HIV-1 transactivator tat.

TAF4 TAF4B TAF5

7.44e-06168438121496
Pubmed

Wild-type and transactivation-defective mutants of human immunodeficiency virus type 1 Tat protein bind human TATA-binding protein in vitro.

TAF4 TAF4B TAF5

7.44e-06168438680883
Pubmed

A novel LBP-1-mediated restriction of HIV-1 transcription at the level of elongation in vitro.

TAF4 TAF4B TAF5

7.44e-06168437836461
Pubmed

Novel mechanism and factor for regulation by HIV-1 Tat.

TAF4 TAF4B TAF5

7.44e-06168437835343
Pubmed

The TAF10-containing TFIID and SAGA transcriptional complexes are dispensable for early somitogenesis in the mouse embryo.

RPLP0 TAF4 TAF4B TAF5

7.85e-065284428893950
Pubmed

In-Depth In Vivo Crosslinking in Minutes by a Compact, Membrane-Permeable, and Alkynyl-Enrichable Crosslinker.

SART3 TNRC18 IRS4 TCERG1L RPLP0 GUCY1A2 SNAP91 PABPC3 CAMSAP3 SMARCC2 DLST ZFR TAF4 PABPC1

8.73e-061442841435575683
Pubmed

Ex vivo Quantitative Proteomic Analysis of Serotonin Transporter Interactome: Network Impact of the SERT Ala56 Coding Variant.

SNAP91 AMOT PABPC3 CASKIN1 APC2 CAMSAP3 STK39 PABPC1

9.82e-0643084832581705
Pubmed

ADAM10 hyperactivation acts on piccolo to deplete synaptic vesicle stores in Huntington's disease.

IQSEC3 SNAP91 PABPC3 CASKIN1 DLST PABPC1

9.94e-0620284633601422
Pubmed

Architecture of TAF11/TAF13/TBP complex suggests novel regulation properties of general transcription factor TFIID.

TAF4 TAF4B TAF5

1.08e-051884329111974
Pubmed

Phosphorylation on Thr-55 by TAF1 mediates degradation of p53: a role for TAF1 in cell G1 progression.

TAF4 TAF4B TAF5

1.08e-051884315053879
Pubmed

Role of flanking E box motifs in human immunodeficiency virus type 1 TATA element function.

TAF4 TAF4B TAF5

1.08e-05188437933101
Pubmed

Interaction of human immunodeficiency virus type 1 Tat with a unique site of TFIID inhibits negative cofactor Dr1 and stabilizes the TFIID-TFIIA complex.

TAF4 TAF4B TAF5

1.28e-05198438764062
Pubmed

Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.

DIDO1 CBX4 TAF4 TAF4B TAF5

1.31e-0512484520850016
Pubmed

H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.

SAMD1 CEBPB MAZ CXXC5 DIDO1 ZFR CBX4 TAF4 GPATCH8 TAF5 RFXAP FOXK1 SCAF4

1.33e-051294841330804502
Pubmed

The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei.

SART3 SAMD1 CEBPB MICALL2 MAZ CAMSAP3 CXXC5 DIDO1 CBX4 TAF4 GPATCH8 TAF5 FOXK1 SCAF4

1.33e-051497841431527615
Pubmed

TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions.

SART3 IRS4 CEBPB ADRM1 AMOT DLST GNAS PABPC1 FOXF2 RBM38 SCAF4

1.36e-05922841127609421
Pubmed

Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

TAF4 TAF4B TAF5

1.50e-052084317884155
Pubmed

The in vivo Interaction Landscape of Histones H3.1 and H3.3.

SAMD1 MAZ SMARCC2 DIDO1 CBX4 TAF4 GPATCH8 RFXAP FOXK1

1.65e-0560884936089195
Pubmed

Embryonic Poly(A)-Binding Protein Is Required During Early Stages of Mouse Oocyte Development for Chromatin Organization, Transcriptional Silencing, and Meiotic Competence.

PABPC3 PABPC1

1.73e-05384226134869
Pubmed

Human testis expresses a specific poly(A)-binding protein.

PABPC3 PABPC1

1.73e-05384211328870
Pubmed

Superovulation alters embryonic poly(A)-binding protein (Epab) and poly(A)-binding protein, cytoplasmic 1 (Pabpc1) gene expression in mouse oocytes and early embryos.

PABPC3 PABPC1

1.73e-05384225034140
Pubmed

circ-PKD2 inhibits carcinogenesis via the miR-204-3p/APC2 axis in oral squamous cell carcinoma.

APC2 PKD2

1.73e-05384231206208
Pubmed

Epab is dispensable for mouse spermatogenesis and male fertility.

PABPC3 PABPC1

1.73e-05384224599567
Pubmed

Differential 3' Processing of Specific Transcripts Expands Regulatory and Protein Diversity Across Neuronal Cell Types.

PABPC3 PABPC1

1.73e-05384229578408
Pubmed

SIRT1 Functions as a Negative Regulator of Eukaryotic Poly(A)RNA Transport.

PABPC3 PABPC1

1.73e-05384228756945
Pubmed

The poly(A)-binding protein genes, EPAB, PABPC1, and PABPC3 are differentially expressed in infertile men with non-obstructive azoospermia.

PABPC3 PABPC1

1.73e-05384226843391
Pubmed

Domain-functional analyses of PIWIL1 and PABPC1 indicate their synergistic roles in protein translation via 3'-UTRs of meiotic mRNAs.

PABPC3 PABPC1

1.73e-05384229701755
Pubmed

Nuclear relocalisation of cytoplasmic poly(A)-binding proteins PABP1 and PABP4 in response to UV irradiation reveals mRNA-dependent export of metazoan PABPs.

PABPC3 PABPC1

1.73e-05384221940797
Pubmed

Translation repression via modulation of the cytoplasmic poly(A)-binding protein in the inflammatory response.

PABPC3 PABPC1

1.73e-05384228635594
Pubmed

The mouse Y-box protein, MSY2, is associated with a kinase on non-polysomal mouse testicular mRNAs.

PABPC3 PABPC1

1.73e-05384210076007
Pubmed

Epab and Pabpc1 are differentially expressed in the postnatal mouse ovaries.

PABPC3 PABPC1

1.73e-05384225370180
Pubmed

Epab and Pabpc1 are differentially expressed during male germ cell development.

PABPC3 PABPC1

1.73e-05384222814100
Pubmed

Cytoplasmic poly(A)-binding protein 1 (PABPC1) interacts with the RNA-binding protein hnRNPLL and thereby regulates immunoglobulin secretion in plasma cells.

PABPC3 PABPC1

1.73e-05384228611064
Pubmed

A twin UGUA motif directs the balance between gene isoforms through CFIm and the mTORC1 signaling pathway.

PABPC3 PABPC1

1.73e-05384237665675
Pubmed

De novo variants in the PABP domain of PABPC1 lead to developmental delay.

PABPC3 PABPC1

1.73e-05384235511136
Pubmed

Neuron-specific protein network mapping of autism risk genes identifies shared biological mechanisms and disease-relevant pathologies.

SART3 IQSEC3 TNRC18 RPLP0 ADRM1 CASKIN1 CAMSAP3 SYN2 SMARCC2 DLST ALDH5A1 PCDH8

1.85e-051139841236417873
Pubmed

Acetylation of ELF5 suppresses breast cancer progression by promoting its degradation and targeting CCND1.

SART3 ADRM1 AMOT MAZ ZFR STK39 PABPC1 FOXK1 SCAF4

2.89e-0565384933742100
Pubmed

Nuclear actin interactome analysis links actin to KAT14 histone acetyl transferase and mRNA splicing.

SART3 IRS4 RPLP0 SMARCC2 DLST ZFR PABPC1 SCAF4

3.15e-0550684830890647
Pubmed

Regulation of poly(A) binding protein function in translation: Characterization of the Paip2 homolog, Paip2B.

PABPC3 PABPC1

3.45e-05484216804161
Pubmed

Evolution of complexity in the zebrafish synapse proteome.

PABPC3 PABPC1

3.45e-05484228252024
Pubmed

An embryonic poly(A)-binding protein (ePAB) is expressed in mouse oocytes and early preimplantation embryos.

PABPC3 PABPC1

3.45e-05484215630085
Pubmed

Cryptochrome mediates circadian regulation of cAMP signaling and hepatic gluconeogenesis.

CRY2 GNAS

3.45e-05484220852621
Pubmed

Regulation and function of Spalt proteins during animal development.

SALL3 SALL4

3.45e-05484219247946
Pubmed

Genomic organization and chromosomal localization of the mouse snail (Sna) gene.

CEBPB GNAS

3.45e-0548429271672
Pubmed

The vertebrate spalt genes in development and disease.

SALL3 SALL4

3.45e-05484216545361
Pubmed

Neural RNA-binding protein Musashi1 inhibits translation initiation by competing with eIF4G for PABP.

PABPC3 PABPC1

3.45e-05484218490513
Pubmed

UNR, a new partner of poly(A)-binding protein, plays a key role in translationally coupled mRNA turnover mediated by the c-fos major coding-region determinant.

PABPC3 PABPC1

3.45e-05484215314026
Pubmed

Stress granules inhibit apoptosis by reducing reactive oxygen species production.

PABPC3 PABPC1

3.45e-05484223230274
Pubmed

A class III PDZ binding motif in the myotilin and FATZ families binds enigma family proteins: a common link for Z-disc myopathies.

LDB3 MYOZ3

3.45e-05484219047374
Pubmed

Oxygen-dependent expression of cytochrome c oxidase subunit 4-2 gene expression is mediated by transcription factors RBPJ, CXXC5 and CHCHD2.

CXXC5 CHCHD2

3.45e-05484223303788
Pubmed

Transthyretin Upregulates Long Non-Coding RNA MEG3 by Affecting PABPC1 in Diabetic Retinopathy.

PABPC3 PABPC1

3.45e-05484231847264
Pubmed

BHLHB4 is a bHLH transcriptional regulator in pancreas and brain that marks the dimesencephalic boundary.

BHLHE23 GNAS

3.45e-05484211863370
Pubmed

RNA-binding proteins in mouse oocytes and embryos: expression of genes encoding Y box, DEAD box RNA helicase, and polyA binding proteins.

PABPC3 PABPC1

3.45e-0548429883581
Pubmed

TAF4/4b x TAF12 displays a unique mode of DNA binding and is required for core promoter function of a subset of genes.

TAF4 TAF4B

3.45e-05484219635797
Pubmed

Immunoaffinity enrichment and mass spectrometry analysis of protein methylation.

PABPC3 PABPC1

3.45e-05484224129315
Pubmed

cTag-PAPERCLIP Reveals Alternative Polyadenylation Promotes Cell-Type Specific Protein Diversity and Shifts Araf Isoforms with Microglia Activation.

PABPC3 PABPC1

3.45e-05484228910620
Pubmed

ATXN2-CAG42 sequesters PABPC1 into insolubility and induces FBXW8 in cerebellum of old ataxic knock-in mice.

PABPC3 PABPC1

3.45e-05484222956915
Pubmed

Functional cloning of genes that suppress oxidative stress-induced cell death: TCTP prevents hydrogen peroxide-induced cell death.

PABPC3 PABPC1

3.45e-05484219328788
Pubmed

A central chaperone-like role for 14-3-3 proteins in human cells.

IRS4 AMOT MAZ CAMSAP3 CBX4 GNAS PRAG1 ZNRF2 PABPC1 FOXK1

4.34e-05861841036931259
Pubmed

Pro-prion, as a membrane adaptor protein for E3 ligase c-Cbl, facilitates the ubiquitination of IGF-1R, promoting melanoma metastasis.

SAMD1 TNRC18 RPLP0 DGKI DLST MAML2 TAF4 TAF4B FOXK1

4.38e-0568984936543142
Pubmed

Proteomic Analysis Reveals a Role for RSK in p120-catenin Phosphorylation and Melanoma Cell-Cell Adhesion.

IRS4 EPB41L4B NISCH STK39 GTPBP1

4.46e-0516084531678930
Pubmed

Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.

SART3 RPLP0 SMARCC2 ZFR TAF4 TAF5 PABPC1

4.56e-0539084717643375
Pubmed

The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis.

SALL3 SMARCC2 DIDO1 SALL4 GPATCH8 ZNF865 TCF7L1

5.02e-0539684726687479
Pubmed

ZASP: a new Z-band alternatively spliced PDZ-motif protein.

LDB3 MYOZ3

5.74e-05584210427098
Pubmed

Multicentre search for genetic susceptibility loci in sporadic epilepsy syndrome and seizure types: a case-control study.

SYN2 ALDH5A1

5.74e-05584217913586
Pubmed

Linkage mapping around the ragged (Ra) and wasted (wst) loci on distal mouse chromosome 2.

SOX18 GNAS

5.74e-0558428020960
Pubmed

HIV- 1 protease inhibits Cap- and poly(A)-dependent translation upon eIF4GI and PABP cleavage.

PABPC3 PABPC1

5.74e-05584219956697
Pubmed

Interaction of HuDA and PABP at 5'UTR of mouse insulin2 regulates insulin biosynthesis.

PABPC3 PABPC1

5.74e-05584229590218
Pubmed

Poly(A) tail length regulates PABPC1 expression to tune translation in the heart.

PABPC3 PABPC1

5.74e-05584228653618
Pubmed

The architecture of human general transcription factor TFIID core complex.

TAF4 TAF5

5.74e-05584223292512
Pubmed

Embryonic Poly(A)-Binding Protein (EPAB) Is Required for Granulosa Cell EGF Signaling and Cumulus Expansion in Female Mice.

PABPC3 PABPC1

5.74e-05584226492470
InteractionYAP1 interactions

TNRC18 IRS4 RPLP0 RPLP0P6 AMOT PABPC3 OTUD1 APC2 SMARCC2 DIDO1 NAA30 ZFR TAF4 GNAS TAF5 NFAT5 PABPC1 SCAF4

4.65e-0710958418int:YAP1
InteractionRNPS1 interactions

SART3 CEBPB DLST ZFR TAF4 GPATCH8 TAF5 TOPORS FOXK1 SCAF4 FOXE3

1.50e-064258411int:RNPS1
InteractionSNU13 interactions

SART3 CEBPB RPLP0 RPLP0P6 PABPC3 DLST GTPBP1 RFXAP PABPC1

2.90e-06285849int:SNU13
InteractionLUC7L interactions

BHLHE23 CEBPB RPLP0 CHCHD2 DLST GPATCH8 CHCHD2P9 SCAF4

7.65e-06242848int:LUC7L
InteractionFOXE3 interactions

CHCHD2 SALL4 FOXE3

8.21e-0610843int:FOXE3
InteractionTFCP2 interactions

LDB3 IRS4 CEBPB RPLP0 RPLP0P6 AMOT PABPC3 SALL4 GNAS PABPC1

1.34e-054368410int:TFCP2
InteractionSMC5 interactions

SART3 IRS4 SALL3 RPLP0 SNAP91 RPLP0P6 PABPC3 MAZ SMARCC2 DIDO1 ZFR CBX4 TAF4 PABPC1 SCAF4

1.46e-0510008415int:SMC5
InteractionCELF1 interactions

MEX3A CEBPB MEX3D CAMSAP3 ZFR GPATCH8 PABPC1 SCAF4

2.69e-05288848int:CELF1
InteractionSENP3 interactions

SAMD1 RPLP0 SNAP91 NACC2 NISCH MEX3D CHCHD2 ZFR

3.68e-05301848int:SENP3
InteractionSPATA25 interactions

TAF4 TAF4B TAF5

5.45e-0518843int:SPATA25
InteractionWEE2-AS1 interactions

NISCH DIDO1 DLST GTPBP1 PABPC1 FOXK1

6.16e-05163846int:WEE2-AS1
InteractionING1 interactions

TNRC18 SALL3 CAMSAP3 SMARCC2 FOXK1

7.09e-05103845int:ING1
InteractionFMR1 interactions

MEX3A RPLP0 NISCH CASKIN1 OTUD1 APC2 SMARCC2 DLST ZFR PABPC1

7.70e-055368410int:FMR1
InteractionMED26 interactions

CEBPB TAF4 TAF4B TAF5 SCAF4

8.50e-05107845int:MED26
InteractionLSM14A interactions

MEX3A CEBPB RPLP0 MICALL2 ZFR GTPBP1 PABPC1

1.07e-04260847int:LSM14A
InteractionRBBP4 interactions

TNRC18 CEBPB SALL3 RPLP0 NACC2 ADRM1 OTUD1 SMARCC2 SALL4 TOPORS

1.33e-045738410int:RBBP4
CytobandEnsembl 112 genes in cytogenetic band chr20q13

BHLHE23 CEBPB ADRM1 SOX18 DIDO1 SALL4 TAF4 GNAS RBM38

8.62e-08422849chr20q13
Cytoband20q13.33

BHLHE23 ADRM1 SOX18 DIDO1 TAF4

3.68e-077984520q13.33
Cytoband1p33

MTF1 DMBX1

1.89e-03358421p33
CytobandEnsembl 112 genes in cytogenetic band chr7p22

TNRC18 MICALL2 FOXK1

1.95e-03134843chr7p22
GeneFamilyForkhead boxes

FOXK1 FOXF2 FOXE3

3.35e-0443573508
GeneFamilyRNA binding motif containing

SART3 PABPC3 PABPC1 RBM38 SCAF4

5.51e-04213575725
CoexpressionNIKOLSKY_BREAST_CANCER_20Q12_Q13_AMPLICON

BHLHE23 CEBPB ADRM1 SOX18 DIDO1 SALL4 TAF4 GNAS RBM38

1.24e-09149849M18973
CoexpressionMEISSNER_NPC_HCP_WITH_H3K4ME2_AND_H3K27ME3

IQSEC3 HMX3 SOX18 INSM2 SALL4 GNAS PHLDA2 DMBX1 FOXF2 FOXE3

1.82e-073508410M1949
CoexpressionMEISSNER_NPC_HCP_WITH_H3K4ME2_AND_H3K27ME3

IQSEC3 HMX3 SOX18 INSM2 SALL4 GNAS PHLDA2 DMBX1 FOXF2 FOXE3

2.19e-073578410MM828
CoexpressionMEISSNER_BRAIN_HCP_WITH_H3K27ME3

BHLHE23 HMX3 INSM2 SALL4 DLX4 GNAS DMBX1 FOXE3

2.68e-06272848M1938
CoexpressionMEISSNER_BRAIN_HCP_WITH_H3K27ME3

BHLHE23 HMX3 INSM2 SALL4 DLX4 GNAS DMBX1 FOXE3

3.49e-06282848MM822
CoexpressionMIKKELSEN_NPC_HCP_WITH_H3K27ME3

IQSEC3 BHLHE23 TCERG1L SOX18 SALL4 PHLDA2 DMBX1 FOXE3

1.52e-05345848M2009
CoexpressionMIKKELSEN_NPC_HCP_WITH_H3K27ME3

IQSEC3 BHLHE23 TCERG1L SOX18 SALL4 PHLDA2 DMBX1 FOXE3

1.58e-05347848MM860
CoexpressionLIU_OVARIAN_CANCER_TUMORS_AND_XENOGRAFTS_XDGS_UP

PABPC3 CHCHD2 DLX4 FOXI3 PABPC1

2.58e-05108845MM1334
CoexpressionHOXA9_DN.V1_DN

MEX3D SOX18 STAM TAF4B ALDH5A1 RBM38

3.41e-05190846M2848
CoexpressionGSE20152_HTNFA_OVERXPRESS_ANKLE_VS_CTRL_SPHK1_KO_ANKLE_UP

MICALL2 SNAP91 MTF1 CBX4 TAF4 TOPORS

4.06e-05196846M7687
CoexpressionPEREZ_TP53_AND_TP63_TARGETS

MICALL2 EPB41L4B APC2 TAF5 FOXF2 RBM38

5.49e-05207846M14566
CoexpressionHOELZEL_NF1_TARGETS_UP

CEBPB NACC2 MAML2 GNAS PHLDA2

9.21e-05141845M2142
CoexpressionBOYLAN_MULTIPLE_MYELOMA_C_D_UP

SART3 GID4 PABPC3 PABPC1 RBM38

9.84e-05143845MM788
CoexpressionBENPORATH_SUZ12_TARGETS

IRS4 BHLHE23 GUCY1A2 AMOT HMX3 ACSS1 DGKI INSM2 DLX4 GNAS PCDH8 FOXE3

1.11e-0410358412M9898
CoexpressionPEREZ_TP53_TARGETS

MICALL2 EPB41L4B ADRM1 GID4 APC2 CXXC5 DIDO1 INSM2 CBX4 GNAS TAF5 FOXF2 SCAF4

1.11e-0412018413M4391
CoexpressionMIKKELSEN_MEF_HCP_WITH_H3K27ME3

IQSEC3 BHLHE23 TCERG1L SOX18 INSM2 SALL4 PCDH8 DMBX1 FOXE3

1.16e-04591849M2019
CoexpressionMIKKELSEN_MEF_HCP_WITH_H3K27ME3

IQSEC3 BHLHE23 TCERG1L SOX18 INSM2 SALL4 PCDH8 DMBX1 FOXE3

1.32e-04601849MM866
CoexpressionBILD_E2F3_ONCOGENIC_SIGNATURE

SAMD1 EPB41L4B CXXC5 TAF4 GNAS ALDH5A1

1.48e-04248846M13061
ToppCellPCW_05-06-Mesenchymal-Mesenchymal_fibroblastic-mes_immature5_(6)|PCW_05-06 / Celltypes from embryonic and fetal-stage human lung

COL6A3 CEBPB RPLP0 GUCY1A2 SALL4 PRAG1 PABPC1 FOXF2

3.55e-09195848c5d2d9f12fd893331c9de261af30607d845d4f6a
DiseaseDown syndrome (biomarker_via_orthology)

RPLP0 RPLP0P6

7.82e-062832DOID:14250 (biomarker_via_orthology)
Diseasefrontotemporal dementia and/or amyotrophic lateral sclerosis-2 (implicated_via_orthology)

CHCHD2 CHCHD2P9

2.34e-053832DOID:0060214 (implicated_via_orthology)
DiseaseParkinson's disease 22 (implicated_via_orthology)

CHCHD2 CHCHD2P9

2.34e-053832DOID:0080504 (implicated_via_orthology)
Diseasespinal muscular atrophy, Jokela type (implicated_via_orthology)

CHCHD2 CHCHD2P9

2.34e-053832DOID:0081356 (implicated_via_orthology)
Diseasehyperuricemia

PKD2 GNAS NFAT5

1.10e-0433833EFO_0009104
Diseaseinfluenza A severity measurement

MAML2 PRAG1

2.78e-049832EFO_0007743
Diseasepolycystic kidney disease (implicated_via_orthology)

PKD2 STAM

6.96e-0414832DOID:0080322 (implicated_via_orthology)
Diseasecaffeine measurement

STK39 MAML2

8.02e-0415832EFO_0021177
Diseasedisease free survival, rectum cancer

TCERG1L CHCHD2P9

8.02e-0415832EFO_0000409, EFO_1000657
Diseaseresponse to radiation, Urinary retention

COL6A3 MEX3D

1.03e-0317832GO_0009314, HP_0000016
DiseaseIntellectual Disability

IQSEC3 MTF1 APC2 SMARCC2 GNAS ALDH5A1

1.65e-03447836C3714756
Diseaseotitis media (implicated_via_orthology)

NISCH SALL4

1.74e-0322832DOID:10754 (implicated_via_orthology)

Protein segments in the cluster

PeptideGeneStartEntry
APAPAPALASAATKE

BARGIN

526

Q6ZT62
PSGSAPAVAAAAAQP

ACSS1

41

Q9NUB1
AAVAPISVPAPVAAA

AMOT

876

Q4VCS5
ISVPAPVAAAATAAA

AMOT

881

Q4VCS5
AAAAAPAAAAAPSPA

AMOT

916

Q4VCS5
PAAAAAPSPATAAAT

AMOT

921

Q4VCS5
AAPAPRAPAQAAESS

BHLHE23

51

Q8NDY6
PEPSSPGAARAAAAA

GTPBP1

21

O00178
APAASEGAAAPATPT

SNAP91

451

O60641
EGAAAPATPTPVAAA

SNAP91

456

O60641
TAPSPAPAVAAAAAA

SNAP91

521

O60641
RASPAAPADGAAPAQ

CAMSAP3

191

Q9P1Y5
AAAPPSAVGSSAAAP

CHCHD2

36

Q9Y6H1
AVFPDLAPVPSVAAA

DLX4

16

Q92988
SYPAAVPQALSAAAP

RBM38

206

Q9H0Z9
GPRPAAAAAAATPAV

PABPC1

491

P11940
APPAGSIEAAPSSAA

OTUD1

261

Q5VV17
AAAAAAAAAAPPAPP

CASKIN1

1346

Q8WXD9
AATAAAPGAPPAARA

FOXI3

21

A8MTJ6
AASPSAASPPLATAA

LDB3

326

O75112
PPRTLFAPASAAAAA

HMX3

51

A6NHT5
ARASVPAAPNPAATS

MICALL2

296

Q8IY33
AAPCTAAAASHPAVP

MICALL2

351

Q8IY33
KAFPASAALAPATPA

GPATCH8

1341

Q9UKJ3
APGAPATSPFAAAAA

PCDH8

361

O95206
ATSLPSSPAAAACAP

MEX3D

561

Q86XN8
AAAVAAAPPAPAAAS

MAZ

106

P56270
AAPPAPAAASTVDTA

MAZ

111

P56270
SAPAAEAAPPASAAT

MAZ

141

P56270
VAAAPVAAATTAAPA

RPLP0

276

P05388
LPAAPATAPAAAARA

IQSEC3

76

Q9UPP2
AAFSCSVAPAAAPTP

INSM2

146

Q96T92
AGSPPPAVVAADASS

NFAT5

56

O94916
VAAAAPASVADDTPP

CXXC5

41

Q7LFL8
PRPAAAAAAAATPAV

PABPC3

486

Q9H361
AEPAAAAPLTATPVA

PRR27

131

Q6MZM9
AAPLTATPVAAEPAA

PRR27

136

Q6MZM9
ATPVAAEPAAGAPVA

PRR27

141

Q6MZM9
PPPAGASAASAASLI

GID4

91

Q8IVV7
APPAASQAAATAAPP

MAML2

111

Q8IZL2
AEAPAAAAPKAEPTA

DLST

156

P36957
PDGAVPAAPASADAA

APC2

2111

O95996
AAAPPSAVGSSAAAP

CHCHD2P9

36

Q5T1J5
ATAAAVAPAPAPGTD

CRY2

6

Q49AN0
QASGAAAAAPAPVPV

DMRTB1

76

Q96MA1
RAPAAAAAAAASPPG

DGKI

21

O75912
PAPAAAAAAAAVPYL

DMBX1

291

Q8NFW5
ATATDTFEAAPPAPA

CEBPB

91

P17676
AAKPAAVRPPAAAAA

COL6A3

2946

P12111
AAAAAPTTTAEKPPA

CBX4

506

O00257
PAAPSPATAATTAAA

DIDO1

1281

Q9BTC0
CAAAAAAAFPAAAPP

FOXK1

26

P85037
ALPPPETAAAATTAA

SAMD1

6

Q6SPF0
ENGPAAAPAVAAPAA

SART3

931

Q15020
AAPAVAAPAATEAPK

SART3

936

Q15020
PAPTATVPAAAAPAA

SCAF4

296

O95104
AAPAPAPAPQSAASS

SALL3

321

Q9BXA9
QTPEFADAAPAAPAA

SALL4

26

Q9UJQ4
PAAAASSSALPAAPG

EPB41L4B

41

Q9H329
RPGTSAPAAAAAALP

nan

596

A6NNC1
APAAAAAALPPSTLN

nan

601

A6NNC1
EPAALAAAAAAEPPF

IRS4

216

O14654
ALMSPPPAAAAAAAA

FOXF2

26

Q12947
PPAAAAAAAAAPETT

FOXF2

31

Q12947
LEPSPAAAAAAAAPA

GUCY1A2

46

P33402
AAAAAAAAPAPTPAA

GUCY1A2

51

P33402
AAAPAPTPAASAAAA

GUCY1A2

56

P33402
TEPAGAAPPAAVSAS

TAF4B

6

Q92750
SCAPVPAAAAVAAGP

TAF4

136

O00268
PTVAVSAAAPAGAAP

TAF5

66

Q15542
SAAAPAGAAPVPAAA

TAF5

71

Q15542
SAGLVDAPAPAPAAA

SYN2

96

Q92777
VAAAPVAADTTAAPA

RPLP0P6

276

Q8NHW5
PAAATFPVQDPASGA

ALDH5A1

71

P51649
DAAAATPAAPSPASL

RFLNB

61

Q8N5W9
AVASAVAAPAPPQST

MTF1

511

Q14872
AARAAPAAPADPDSG

GNAS

391

Q5JWF2
PEAPAAPAAAETRAA

GNAS

471

Q5JWF2
APDAGAPTAPAASAT

GNAS

491

Q5JWF2
AAPDAAAAAFPPCAA

FOXE3

241

Q13461
AAAAFPPCAAAASPP

FOXE3

246

Q13461
LAAAAVAAPLSAPPS

PPP1R3G

181

B7ZBB8
PAAAPTLAPASVAAA

RFXAP

26

O00287
LAVAPASVVPAPAGS

SMARCC2

986

Q8TAQ2
RATPAPSAPAAASAT

ADRM1

226

Q16186
LPLPSAPDSAAAAAA

TCERG1L

91

Q5VWI1
DASAAAPAPVSTAPA

TNRC18

2006

O15417
AAAAAAPAAPAAPRS

ZNRF2

66

Q8NHG8
LPAPAASAATAAAPS

ZNF865

296

P0CJ78
ARAAPLVPAASASAP

TPRX1

41

Q8N7U7
PAQASPARASPALAS

TMPRSS13

81

Q9BYE2
AQPAAPAQASAAIPA

SARG

391

Q9BW04
TPSAALASPAAPAAT

TCF7L1

481

Q9HCS4
AAPPAAPTAAPAAQT

MEX3A

86

A1L020
AEVPAPAPAAASASG

NISCH

1056

Q9Y2I1
SPPPAATAAAATADV

STAM

481

Q92783
QAAARDPPAGAAASP

PKD2

61

Q13563
APAPAAAAPPCSSAA

PRAG1

1171

Q86YV5
AVAAAAAAPSEPSEP

PHLDA2

126

Q53GA4
RPAPVAVAAAATAAA

ZFR

91

Q96KR1
ELAASAPARPAPASS

TOPORS

51

Q9NS56
AAGPAALAAPAAPAS

SOX18

36

P35713
AAPAAATAAPAPAAP

STK39

26

Q9UEW8
PAAAAAAPYVVSPSV

NACC2

151

Q96BF6
PSPVEAAAASDPAAA

NAA30

151

Q147X3
AAAPAGCVPSPSALA

MYOZ3

126

Q8TDC0