Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctionmRNA binding

TRA2B YBX1 YBX3 FXR1 SRSF1

7.71e-05694145GO:0003729
GeneOntologyMolecularFunctionsingle-stranded DNA binding

YBX1 YBX3

3.86e-03134142GO:0003697
GeneOntologyBiologicalProcessnegative regulation of mRNA catabolic process

YBX1 THRAP3 YBX3 FXR1 SRSF1

2.31e-0987145GO:1902373
GeneOntologyBiologicalProcessnegative regulation of RNA catabolic process

YBX1 THRAP3 YBX3 FXR1 SRSF1

4.92e-09101145GO:1902369
GeneOntologyBiologicalProcessnegative regulation of mRNA metabolic process

YBX1 THRAP3 YBX3 FXR1 SRSF1

9.49e-09115145GO:1903312
GeneOntologyBiologicalProcessmRNA metabolic process

TRA2B YBX1 THRAP3 SRSF8 YBX3 FXR1 CLASRP SRSF1

3.50e-08917148GO:0016071
GeneOntologyBiologicalProcessmRNA stabilization

YBX1 THRAP3 YBX3 SRSF1

1.75e-0777144GO:0048255
GeneOntologyBiologicalProcessregulation of mRNA metabolic process

TRA2B YBX1 THRAP3 YBX3 FXR1 SRSF1

2.46e-07443146GO:1903311
GeneOntologyBiologicalProcessRNA stabilization

YBX1 THRAP3 YBX3 SRSF1

3.00e-0788144GO:0043489
GeneOntologyBiologicalProcessRNA splicing

TRA2B YBX1 THRAP3 SRSF8 CLASRP SRSF1

5.13e-07502146GO:0008380
GeneOntologyBiologicalProcessmRNA processing

TRA2B YBX1 THRAP3 SRSF8 CLASRP SRSF1

8.85e-07551146GO:0006397
GeneOntologyBiologicalProcessregulation of mRNA stability

YBX1 THRAP3 YBX3 FXR1 SRSF1

9.91e-07292145GO:0043488
GeneOntologyBiologicalProcessregulation of RNA stability

YBX1 THRAP3 YBX3 FXR1 SRSF1

1.29e-06308145GO:0043487
GeneOntologyBiologicalProcessregulation of mRNA catabolic process

YBX1 THRAP3 YBX3 FXR1 SRSF1

1.31e-06309145GO:0061013
GeneOntologyBiologicalProcessmRNA catabolic process

YBX1 THRAP3 YBX3 FXR1 SRSF1

3.30e-06373145GO:0006402
GeneOntologyBiologicalProcessnegative regulation of catabolic process

YBX1 THRAP3 YBX3 FXR1 SRSF1

5.75e-06418145GO:0009895
GeneOntologyBiologicalProcessRNA catabolic process

YBX1 THRAP3 YBX3 FXR1 SRSF1

6.75e-06432145GO:0006401
GeneOntologyBiologicalProcessnucleic acid catabolic process

YBX1 THRAP3 YBX3 FXR1 SRSF1

9.54e-06464145GO:0141188
GeneOntologyBiologicalProcesspositive regulation of RNA splicing

TRA2B THRAP3 SRSF1

9.65e-0663143GO:0033120
GeneOntologyBiologicalProcessalternative mRNA splicing, via spliceosome

TRA2B THRAP3 SRSF1

1.91e-0579143GO:0000380
GeneOntologyBiologicalProcesspositive regulation of mRNA metabolic process

TRA2B YBX1 THRAP3 FXR1

2.20e-05259144GO:1903313
GeneOntologyBiologicalProcessRNA processing

TRA2B TDRD5 YBX1 THRAP3 SRSF8 CLASRP SRSF1

2.31e-051500147GO:0006396
GeneOntologyBiologicalProcesspositive regulation of cytoplasmic translation

YBX1 YBX3

5.78e-0517142GO:2000767
GeneOntologyBiologicalProcessnucleobase-containing compound catabolic process

YBX1 THRAP3 YBX3 FXR1 SRSF1

6.70e-05696145GO:0034655
GeneOntologyBiologicalProcessmRNA splicing, via spliceosome

TRA2B THRAP3 SRSF8 SRSF1

7.78e-05358144GO:0000398
GeneOntologyBiologicalProcessRNA splicing, via transesterification reactions with bulged adenosine as nucleophile

TRA2B THRAP3 SRSF8 SRSF1

7.78e-05358144GO:0000377
GeneOntologyBiologicalProcessRNA splicing, via transesterification reactions

TRA2B THRAP3 SRSF8 SRSF1

8.13e-05362144GO:0000375
GeneOntologyBiologicalProcesspositive regulation of translation

YBX1 YBX3 FXR1

1.32e-04151143GO:0045727
GeneOntologyBiologicalProcessRNA transport

YBX1 FXR1 SRSF1

2.04e-04175143GO:0050658
GeneOntologyBiologicalProcessnucleic acid transport

YBX1 FXR1 SRSF1

2.04e-04175143GO:0050657
GeneOntologyBiologicalProcessestablishment of RNA localization

YBX1 FXR1 SRSF1

2.14e-04178143GO:0051236
GeneOntologyBiologicalProcesspositive regulation of gene expression

TRA2B YBX1 THRAP3 YBX3 FXR1 SRSF1

2.16e-041446146GO:0010628
GeneOntologyBiologicalProcessregulation of cytoplasmic translation

YBX1 YBX3

2.81e-0437142GO:2000765
GeneOntologyBiologicalProcessregulation of RNA splicing

TRA2B THRAP3 SRSF1

3.34e-04207143GO:0043484
GeneOntologyBiologicalProcessRNA localization

YBX1 FXR1 SRSF1

3.84e-04217143GO:0006403
GeneOntologyBiologicalProcesspositive regulation of mRNA splicing, via spliceosome

TRA2B THRAP3

3.98e-0444142GO:0048026
GeneOntologyBiologicalProcesspositive regulation of mRNA processing

TRA2B THRAP3

4.94e-0449142GO:0050685
GeneOntologyBiologicalProcessskeletal muscle organ development

YBX3 MYORG FXR1

5.15e-04240143GO:0060538
GeneOntologyBiologicalProcessnucleobase-containing compound transport

YBX1 FXR1 SRSF1

5.73e-04249143GO:0015931
GeneOntologyBiologicalProcesspost-transcriptional regulation of gene expression

YBX1 THRAP3 YBX3 FXR1 SRSF1

7.09e-041153145GO:0010608
GeneOntologyBiologicalProcessregulation of alternative mRNA splicing, via spliceosome

TRA2B THRAP3

7.16e-0459142GO:0000381
GeneOntologyBiologicalProcessregulation of catabolic process

YBX1 THRAP3 YBX3 FXR1 SRSF1

1.03e-031252145GO:0009894
GeneOntologyBiologicalProcessembryo development

TRA2B TDRD5 YBX1 YBX3 SRSF1

1.92e-031437145GO:0009790
GeneOntologyBiologicalProcessmuscle structure development

YBX1 YBX3 MYORG FXR1

2.13e-03858144GO:0061061
GeneOntologyBiologicalProcessmuscle organ development

YBX3 MYORG FXR1

2.87e-03436143GO:0007517
GeneOntologyBiologicalProcesscellular response to cytokine stimulus

YBX1 BCLAF1 YBX3 SRSF1

3.29e-03967144GO:0071345
GeneOntologyBiologicalProcessregulation of mRNA splicing, via spliceosome

TRA2B THRAP3

3.36e-03129142GO:0048024
GeneOntologyBiologicalProcessnuclear-transcribed mRNA catabolic process

YBX1 THRAP3

3.52e-03132142GO:0000956
GeneOntologyBiologicalProcessregulation of circadian rhythm

THRAP3 FXR1

3.68e-03135142GO:0042752
GeneOntologyBiologicalProcessregulation of translation

YBX1 YBX3 FXR1

4.08e-03494143GO:0006417
GeneOntologyBiologicalProcessmRNA transport

FXR1 SRSF1

4.23e-03145142GO:0051028
GeneOntologyBiologicalProcessresponse to cytokine

YBX1 BCLAF1 YBX3 SRSF1

4.95e-031083144GO:0034097
GeneOntologyBiologicalProcessregulation of mRNA processing

TRA2B THRAP3

4.99e-03158142GO:0050684
GeneOntologyBiologicalProcessresponse to peptide

YBX1 BCLAF1 YBX3 SRSF1

5.24e-031100144GO:1901652
GeneOntologyBiologicalProcesscytoplasmic translation

YBX1 YBX3

5.89e-03172142GO:0002181
GeneOntologyBiologicalProcessin utero embryonic development

YBX1 YBX3 SRSF1

6.89e-03596143GO:0001701
GeneOntologyBiologicalProcessmRNA destabilization

YBX1 FXR1

8.35e-03206142GO:0061157
GeneOntologyBiologicalProcessRNA destabilization

YBX1 FXR1

8.74e-03211142GO:0050779
GeneOntologyBiologicalProcesspositive regulation of mRNA catabolic process

YBX1 FXR1

8.74e-03211142GO:0061014
GeneOntologyBiologicalProcessregulation of intrinsic apoptotic signaling pathway

BCLAF1 YBX3

9.14e-03216142GO:2001242
GeneOntologyBiologicalProcesspallium development

TRA2B FXR1

9.64e-03222142GO:0021543
GeneOntologyBiologicalProcessskeletal muscle tissue development

YBX3 MYORG

9.72e-03223142GO:0007519
GeneOntologyBiologicalProcessnegative regulation of translation

YBX1 FXR1

1.03e-02230142GO:0017148
GeneOntologyBiologicalProcesscircadian rhythm

THRAP3 FXR1

1.19e-02248142GO:0007623
GeneOntologyCellularComponentcytoplasmic ribonucleoprotein granule

TDRD5 YBX1 PRRC2C FXR1

2.43e-05269144GO:0036464
GeneOntologyCellularComponentribonucleoprotein granule

TDRD5 YBX1 PRRC2C FXR1

3.12e-05287144GO:0035770
GeneOntologyCellularComponentcytoplasmic stress granule

YBX1 PRRC2C FXR1

3.29e-0596143GO:0010494
GeneOntologyCellularComponentexon-exon junction complex

THRAP3 SRSF1

8.68e-0521142GO:0035145
GeneOntologyCellularComponentnuclear speck

BCLAF1 THRAP3 SRSF8 SRSF1

1.51e-04431144GO:0016607
GeneOntologyCellularComponentmediator complex

BCLAF1 THRAP3

2.74e-0437142GO:0016592
GeneOntologyCellularComponentspliceosomal complex

TRA2B YBX1 SRSF1

3.59e-04215143GO:0005681
GeneOntologyCellularComponentnuclear envelope

TRA2B MYORG FXR1 SRSF1

4.12e-04560144GO:0005635
GeneOntologyCellularComponentnuclear protein-containing complex

TRA2B YBX1 BCLAF1 THRAP3 SRSF1

1.49e-031377145GO:0140513
GeneOntologyCellularComponentnuclear body

BCLAF1 THRAP3 SRSF8 SRSF1

2.45e-03903144GO:0016604
GeneOntologyCellularComponentperinuclear region of cytoplasm

TRA2B YBX1 YBX3 FXR1

2.77e-03934144GO:0048471
GeneOntologyCellularComponentorganelle envelope

TRA2B MYORG FXR1 SRSF1

1.27e-021435144GO:0031967
DomainTHRAP3_BCLAF1

BCLAF1 THRAP3

1.56e-063142PF15440
DomainTHRAP3_BCLAF1

BCLAF1 THRAP3

1.56e-063142IPR029199
DomainCOLD_SHOCK

YBX1 YBX3

7.81e-066142PS00352
DomainCold-shock_CS

YBX1 YBX3

7.81e-066142IPR019844
DomainCSD

YBX1 YBX3

1.46e-058142PF00313
DomainCSP

YBX1 YBX3

1.46e-058142SM00357
DomainCSP_DNA-bd

YBX1 YBX3

1.46e-058142IPR002059
DomainCold_shock_prot

YBX1 YBX3

1.46e-058142IPR011129
DomainNA-bd_OB-fold

YBX1 YBX3 FXR1

2.97e-0583143IPR012340
DomainRRM_1

TRA2B SRSF8 SRSF1

4.53e-04208143PF00076
DomainRRM

TRA2B SRSF8 SRSF1

5.12e-04217143SM00360
DomainRRM_dom

TRA2B SRSF8 SRSF1

5.84e-04227143IPR000504
DomainRRM

TRA2B SRSF8 SRSF1

6.07e-04230143PS50102
Domain-

TRA2B SRSF8 SRSF1

7.21e-042441433.30.70.330
DomainNucleotide-bd_a/b_plait

TRA2B SRSF8 SRSF1

8.47e-04258143IPR012677
PathwayWP_MRNA_PROCESSING

TRA2B YBX1 BCLAF1 FXR1 CLASRP SRSF1

1.47e-06451136MM15946
PathwayWP_MRNA_PROCESSING

TRA2B YBX1 CLASRP SRSF1

4.09e-06126134M39406
PathwayREACTOME_MRNA_SPLICING

TRA2B YBX1 SRSF8 SRSF1

3.20e-05212134M14033
PathwayWP_INTERACTOME_OF_POLYCOMB_REPRESSIVE_COMPLEX_2_PRC2

BCLAF1 THRAP3

9.35e-0516132M39484
PathwayREACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA

TRA2B YBX1 SRSF8 SRSF1

9.85e-05283134M13087
PathwayKEGG_SPLICEOSOME

TRA2B SRSF8 SRSF1

1.91e-04127133M2044
PathwayREACTOME_MRNA_SPLICING

TRA2B YBX1 SRSF1

7.35e-04201133MM15411
PathwayREACTOME_MRNA_SPLICING_MINOR_PATHWAY

YBX1 SRSF1

8.65e-0448132MM15410
PathwayREACTOME_MRNA_SPLICING_MINOR_PATHWAY

YBX1 SRSF1

9.38e-0450132M5583
PathwayREACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA

TRA2B YBX1 SRSF1

1.85e-03277133MM15414
PathwayREACTOME_METABOLISM_OF_RNA

TRA2B YBX1 SRSF8 SRSF1

3.40e-03724134M16843
Pubmed

RNA-binding proteins with basic-acidic dipeptide (BAD) domains self-assemble and aggregate in Alzheimer's disease.

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 SRSF8 YBX3 FXR1 CLASRP SRSF1

1.15e-14713141029802200
Pubmed

SND1 binds SARS-CoV-2 negative-sense RNA and promotes viral RNA synthesis through NSP9.

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

2.38e-1425814837794589
Pubmed

Circular RNA circPVT1 promotes nasopharyngeal carcinoma metastasis via the β-TrCP/c-Myc/SRSF1 positive feedback loop.

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 YBX3 FXR1 SRSF1

2.53e-1426014836199071
Pubmed

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 SRSF8 YBX3 FXR1 SRSF1

3.37e-1280714922681889
Pubmed

Regulation of alternative splicing by SRrp86 and its interacting proteins.

TRA2B YBX1 THRAP3 SRSF8 SRSF1

1.96e-115714514559993
Pubmed

The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus.

TRA2B YBX1 THRAP3 SRSF8 YBX3 SRSF1

3.50e-1116914623084401
Pubmed

SMYD3 Impedes Small Cell Lung Cancer Sensitivity to Alkylation Damage through RNF113A Methylation-Phosphorylation Cross-talk.

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

4.12e-1165514835819319
Pubmed

PTPN14 regulates Roquin2 stability by tyrosine dephosphorylation.

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

5.42e-1167814830209976
Pubmed

Anticancer sulfonamides target splicing by inducing RBM39 degradation via recruitment to DCAF15.

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

8.17e-1171414828302793
Pubmed

Characterizing ZC3H18, a Multi-domain Protein at the Interface of RNA Production and Destruction Decisions.

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 SRSF8 YBX3 SRSF1

9.85e-1173114829298432
Pubmed

The interactome of CLUH reveals its association to SPAG5 and its co-translational proximity to mitochondrial proteins.

TRA2B PRRC2C THRAP3 YBX3 FXR1 SRSF1

1.06e-1020314635012549
Pubmed

New roles for the de-ubiquitylating enzyme OTUD4 in an RNA-protein network and RNA granules.

TRA2B YBX1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

2.21e-1046214731138677
Pubmed

Poly(ADP-ribosyl)ation of BRD7 by PARP1 confers resistance to DNA-damaging chemotherapeutic agents.

YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

3.14e-1048614730940648
Pubmed

Interactome analyses revealed that the U1 snRNP machinery overlaps extensively with the RNAP II machinery and contains multiple ALS/SMA-causative proteins.

TRA2B YBX1 BCLAF1 THRAP3 YBX3 SRSF1

3.21e-1024414629884807
Pubmed

SPATA2 Links CYLD to LUBAC, Activates CYLD, and Controls LUBAC Signaling.

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 SRSF1

8.21e-1055814727591049
Pubmed

Interactome analysis of the human Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 (hMTr1) protein.

YBX1 BCLAF1 YBX3 FXR1 SRSF1

1.78e-0913814530320910
Pubmed

The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability.

YBX1 BCLAF1 THRAP3 SRSF8 YBX3 SRSF1

1.89e-0932814623398456
Pubmed

ZBTB2 protein is a new partner of the Nucleosome Remodeling and Deacetylase (NuRD) complex.

TRA2B BCLAF1 THRAP3 SRSF8 YBX3 FXR1

1.96e-0933014633301849
Pubmed

NudCL2 regulates cell migration by stabilizing both myosin-9 and LIS1 with Hsp90.

TRA2B YBX1 THRAP3 FXR1 CHGB SRSF1

2.07e-0933314632665550
Pubmed

Charting the landscape of tandem BRCT domain-mediated protein interactions.

TRA2B YBX1 BCLAF1 THRAP3 YBX3 CLASRP SRSF1

2.91e-0967014722990118
Pubmed

SR protein kinases promote splicing of nonconsensus introns.

TRA2B BCLAF1 PRRC2C THRAP3 YBX3 CLASRP

3.36e-0936114626167880
Pubmed

The protein interaction landscape of the human CMGC kinase group.

TRA2B BCLAF1 THRAP3 SRSF8 YBX3 CLASRP SRSF1

3.75e-0969514723602568
Pubmed

Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis.

TRA2B YBX1 BCLAF1 YBX3 SRSF1

5.39e-0917214526336360
Pubmed

Targeting USP10 induces degradation of oncogenic ANLN in esophageal squamous cell carcinoma.

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

7.05e-09125714836526897
Pubmed

Loss of TRIM31 promotes breast cancer progression through regulating K48- and K63-linked ubiquitination of p53.

TRA2B YBX1 THRAP3 YBX3 FXR1 SRSF1

8.40e-0942114634650049
Pubmed

TRIM28-mediated nucleocapsid protein SUMOylation enhances SARS-CoV-2 virulence.

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 SRSF1

9.53e-0943014638172120
Pubmed

HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation.

YBX1 BCLAF1 PRRC2C THRAP3 SRSF8 YBX3 FXR1 SRSF1

1.39e-08137114836244648
Pubmed

Combinatorial targeting of a chromatin complex comprising Dot1L, menin and the tyrosine kinase BAZ1B reveals a new therapeutic vulnerability of endocrine therapy-resistant breast cancer.

TRA2B YBX1 BCLAF1 THRAP3 YBX3 FXR1 SRSF1

1.47e-0884714735850772
Pubmed

CAF-derived exosomal WEE2-AS1 facilitates colorectal cancer progression via promoting degradation of MOB1A to inhibit the Hippo pathway.

YBX1 BCLAF1 THRAP3 FXR1

1.66e-087214436123327
Pubmed

The SARS-CoV-2 RNA interactome.

YBX1 THRAP3 YBX3 FXR1

1.86e-087414433989516
Pubmed

GREB1: An evolutionarily conserved protein with a glycosyltransferase domain links ERα glycosylation and stability to cancer.

YBX1 BCLAF1 THRAP3 YBX3 FXR1

1.98e-0822314533731348
Pubmed

TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions.

TRA2B YBX1 BCLAF1 THRAP3 YBX3 SRSF1 PJA1

2.62e-0892214727609421
Pubmed

Ovarian tumorB1-mediated heat shock transcription factor 1 deubiquitination is critical for glycolysis and development of endometriosis.

TRA2B YBX1 BCLAF1 THRAP3 SRSF1

2.63e-0823614536339263
Pubmed

Identification of proteins associated with ligand-activated estrogen receptor α in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS.

YBX1 BCLAF1 THRAP3 YBX3 SRSF1

3.17e-0824514521182205
Pubmed

TBK1 phosphorylation activates LIR-dependent degradation of the inflammation repressor TNIP1.

TRA2B YBX1 BCLAF1 THRAP3 YBX3 FXR1 SRSF1

3.20e-0894914736574265
Pubmed

SETD1A Methyltransferase Is Physically and Functionally Linked to the DNA Damage Repair Protein RAD18.

TRA2B BCLAF1 PRRC2C THRAP3 SRSF8

3.57e-0825114531076518
Pubmed

Arginine methylation and ubiquitylation crosstalk controls DNA end-resection and homologous recombination repair.

YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1

4.15e-0855114634728620
Pubmed

ISG15 Connects Autophagy and IFN-γ-Dependent Control of Toxoplasma gondii Infection in Human Cells.

YBX1 BCLAF1 PRRC2C THRAP3 SRSF1

4.95e-0826814533024031
Pubmed

CHD3 and CHD4 form distinct NuRD complexes with different yet overlapping functionality.

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 SRSF1

7.21e-0860514628977666
Pubmed

Molecular Characterization of the Oncogene BTF3 and Its Targets in Colorectal Cancer.

TRA2B YBX1 BCLAF1 THRAP3 FXR1 SRSF1

8.82e-0862614633644029
Pubmed

Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy.

YBX1 BCLAF1 THRAP3 SRSF1

8.92e-0810914429511296
Pubmed

ZZW-115-dependent inhibition of NUPR1 nuclear translocation sensitizes cancer cells to genotoxic agents.

TRA2B BCLAF1 THRAP3 YBX3 FXR1 SRSF1

1.20e-0766014632780723
Pubmed

Complementary proteomics strategies capture an ataxin-1 interactome in Neuro-2a cells.

TRA2B BCLAF1 PRRC2C THRAP3 FXR1 SRSF1

1.26e-0766514630457570
Pubmed

The necdin interactome: evaluating the effects of amino acid substitutions and cell stress using proximity-dependent biotinylation (BioID) and mass spectrometry.

TRA2B YBX1 BCLAF1 PRRC2C SRSF1

1.39e-0733014532529326
Pubmed

Btf and TRAP150 have distinct roles in regulating subcellular mRNA distribution.

BCLAF1 THRAP3

1.50e-07214223778535
Pubmed

The RNA processing factors THRAP3 and BCLAF1 promote the DNA damage response through selective mRNA splicing and nuclear export.

BCLAF1 THRAP3

1.50e-07214229112714
Pubmed

YB-3 substitutes YB-1 in global mRNA binding.

YBX1 YBX3

1.50e-07214231944153
Pubmed

Differential distribution of Y-box-binding protein 1 and cold shock domain protein A in developing and adult human brain.

YBX1 YBX3

1.50e-07214224817634
Pubmed

Bcl-2-associated transcription factor 1 interacts with fragile X-related protein 1.

BCLAF1 FXR1

1.50e-07214224389646
Pubmed

Alterations in expression pattern of splicing factors in epithelial ovarian cancer and its clinical impact.

TRA2B SRSF1

1.50e-07214223748175
Pubmed

SPATA2-Mediated Binding of CYLD to HOIP Enables CYLD Recruitment to Signaling Complexes.

TRA2B YBX1 BCLAF1 THRAP3 SRSF1

1.94e-0735314527545878
Pubmed

Ubiquitin-Independent Disassembly by a p97 AAA-ATPase Complex Drives PP1 Holoenzyme Formation.

TRA2B YBX1 BCLAF1 THRAP3 SRSF1

2.17e-0736114530344098
Pubmed

Prosaposin facilitates sortilin-independent lysosomal trafficking of progranulin.

YBX1 BCLAF1 THRAP3 SRSF1

3.13e-0714914426370502
Pubmed

A protein-RNA interaction atlas of the ribosome biogenesis factor AATF.

BCLAF1 PRRC2C THRAP3 FXR1

4.38e-0716214431363146
Pubmed

A bead-based approach for large-scale identification of in vitro kinase substrates.

YBX1 BCLAF1 THRAP3 FXR1

4.49e-0716314422113938
Pubmed

Two human genes isolated by a novel method encode DNA-binding proteins containing a common region of homology.

YBX1 YBX3

4.51e-0731422977358
Pubmed

The Y-box motif mediates redox-dependent transcriptional activation in mouse cells.

YBX1 YBX3

4.51e-0731428530481
Pubmed

Cold shock domain family members YB-1 and MSY4 share essential functions during murine embryogenesis.

YBX1 YBX3

4.51e-07314216954378
Pubmed

A human importin-beta family protein, transportin-SR2, interacts with the phosphorylated RS domain of SR proteins.

TRA2B SRSF1

4.51e-07314210713112
Pubmed

Gain of Additional BIRC3 Protein Functions through 3'-UTR-Mediated Protein Complex Formation.

TRA2B YBX1 BCLAF1 THRAP3 YBX3 FXR1 SRSF1

5.09e-07142514730948266
Pubmed

Deubiquitinase FAM/USP9X interacts with the E3 ubiquitin ligase SMURF1 protein and protects it from ligase activity-dependent self-degradation.

YBX1 BCLAF1 THRAP3 SRSF1

5.56e-0717214423184937
Pubmed

A HIV-1 Tat mutant protein disrupts HIV-1 Rev function by targeting the DEAD-box RNA helicase DDX1.

SRSF8 FXR1 SRSF1

7.29e-074514325496916
Pubmed

Dynamic Protein Interactions of the Polycomb Repressive Complex 2 during Differentiation of Pluripotent Cells.

TRA2B YBX1 PRRC2C FXR1 CLASRP

7.91e-0746914527634302
Pubmed

Delineating the HMGB1 and HMGB2 interactome in prostate and ovary epithelial cells and its relationship with cancer.

TRA2B BCLAF1 THRAP3 SRSF1

7.93e-0718814429721183
Pubmed

Characterization of the gene for dbpA, a family member of the nucleic-acid-binding proteins containing a cold-shock domain.

YBX1 YBX3

9.02e-0741427628487
Pubmed

Cloning of a gene, YT521, for a novel RNA splicing-related protein induced by hypoxia/reoxygenation.

TRA2B SRSF1

9.02e-0741429473574
Pubmed

The Nse5/6-like SIMC1-SLF2 complex localizes SMC5/6 to viral replication centers.

YBX1 BCLAF1 PRRC2C THRAP3 YBX3 SRSF1

1.04e-0695414636373674
Pubmed

Profiling of Parkin-binding partners using tandem affinity purification.

PRRC2C YBX3 CHGB SRSF1

1.08e-0620314424244333
Pubmed

Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders.

TRA2B BCLAF1 PRRC2C THRAP3 FXR1 SRSF1

1.10e-0696314628671696
Pubmed

Integrative genomics positions MKRN1 as a novel ribonucleoprotein within the embryonic stem cell gene regulatory network.

YBX1 PRRC2C FXR1

1.13e-065214326265008
Pubmed

In silico APC/C substrate discovery reveals cell cycle-dependent degradation of UHRF1 and other chromatin regulators.

TRA2B YBX1 PRRC2C YBX3 FXR1 SRSF1

1.16e-0697114633306668
Pubmed

Angulin proteins ILDR1 and ILDR2 regulate alternative pre-mRNA splicing through binding to splicing factors TRA2A, TRA2B, or SRSF1.

TRA2B SRSF1

1.50e-06514228785060
Pubmed

Phosphorylation of cold shock domain/Y-box proteins by ERK2 and GSK3beta and repression of the human VEGF promoter.

YBX1 YBX3

1.50e-06514216198352
Pubmed

Identifying biological pathways that underlie primordial short stature using network analysis.

TRA2B YBX1 BCLAF1 THRAP3 FXR1 SRSF1

1.57e-06102414624711643
Pubmed

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning.

YBX1 BCLAF1 THRAP3 CLASRP SRSF1 PJA1

1.70e-06103814626673895
Pubmed

The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells.

TRA2B YBX1 THRAP3 SRSF1

2.06e-0623914426641092
Pubmed

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins.

YBX1 SRSF1

2.25e-06614219561594
Pubmed

Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements.

SRSF8 SRSF1

2.25e-06614217361132
Pubmed

Identification of Wilms' tumor 1-associating protein complex and its role in alternative splicing and the cell cycle.

BCLAF1 THRAP3

2.25e-06614224100041
Pubmed

HIV-1 transcription is regulated by splicing factor SRSF1.

TRA2B SRSF1

2.25e-06614225416801
Pubmed

Functional association of human Ki-1/57 with pre-mRNA splicing events.

YBX1 SRSF1

2.25e-06614219523114
Pubmed

SARS-CoV-2 N Protein Antagonizes Stress Granule Assembly and IFN Production by Interacting with G3BPs to Facilitate Viral Replication.

BCLAF1 THRAP3 YBX3 FXR1

2.28e-0624514435652658
Pubmed

Mapping Extracellular Protein-Protein Interactions Using Extracellular Proximity Labeling (ePL).

TRA2B BCLAF1 THRAP3 SRSF1

2.35e-0624714439238192
Pubmed

WWP1 upregulation predicts poor prognosis and promotes tumor progression by regulating ubiquitination of NDFIP1 in intrahepatic cholangiocarcinoma.

BCLAF1 THRAP3 SRSF1

2.68e-066914335264565
Pubmed

Tissue-Specific Regulation of the Wnt/β-Catenin Pathway by PAGE4 Inhibition of Tankyrase.

YBX1 BCLAF1 THRAP3 SRSF1

2.71e-0625614432698014
Pubmed

SNIP1 Recruits TET2 to Regulate c-MYC Target Genes and Cellular DNA Damage Response.

TRA2B BCLAF1 THRAP3 SRSF1

2.84e-0625914430404004
Pubmed

WWP2 ubiquitylates RNA polymerase II for DNA-PK-dependent transcription arrest and repair at DNA breaks.

PRRC2C THRAP3 YBX3 FXR1 SRSF1

2.98e-0661514531048545
Pubmed

A systematic screen for CDK4/6 substrates links FOXM1 phosphorylation to senescence suppression in cancer cells.

TRA2B CLASRP SRSF1

3.18e-067314322094256
Pubmed

ARPC1B promotes mesenchymal phenotype maintenance and radiotherapy resistance by blocking TRIM21-mediated degradation of IFI16 and HuR in glioma stem cells.

YBX1 YBX3 SRSF1

3.59e-067614336380368
Pubmed

Suppression of ACE2 SUMOylation protects against SARS-CoV-2 infection through TOLLIP-mediated selective autophagy.

YBX1 BCLAF1 PRRC2C THRAP3 SRSF1

3.65e-0664114536057605
Pubmed

Luzp4 defines a new mRNA export pathway in cancer cells.

BCLAF1 THRAP3 SRSF1

4.19e-068014325662211
Pubmed

A Noncanonical Role of Fructose-1, 6-Bisphosphatase 1 Is Essential for Inhibition of Notch1 in Breast Cancer.

YBX1 BCLAF1 THRAP3 SRSF1

4.20e-0628614432041737
Pubmed

SAF-B protein couples transcription and pre-mRNA splicing to SAR/MAR elements.

TRA2B SRSF1

4.21e-0681429671816
Pubmed

FXR1 can bind with the CFIm25/CFIm68 complex and promote the progression of urothelial carcinoma of the bladder by stabilizing TRAF1 mRNA.

FXR1 SRSF1

4.21e-06814235194031
Pubmed

Genetic and Proteomic Interrogation of Lower Confidence Candidate Genes Reveals Signaling Networks in β-Catenin-Active Cancers.

TRA2B YBX1 BCLAF1 THRAP3 FXR1 SRSF1

4.92e-06124714627684187
Pubmed

Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors.

CLASRP SRSF1

5.41e-06914214623875
Pubmed

The mouse poly(C)-binding protein exists in multiple isoforms and interacts with several RNA-binding proteins.

YBX1 YBX3

5.41e-0691428871564
Pubmed

Myosin-X recruits lamellipodin to filopodia tips.

BCLAF1 THRAP3 PJA1

5.78e-068914336861887
Pubmed

Comparative interactome analysis of α-arrestin families in human and Drosophila.

BCLAF1 THRAP3 SRSF1 PJA1

6.00e-0631314438270169
Pubmed

BPA modulates the WDR5/TET2 complex to regulate ERβ expression in eutopic endometrium and drives the development of endometriosis.

YBX1 BCLAF1 THRAP3 FXR1 SRSF1

6.05e-0671114533022573
InteractionSRPK2 interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 SRSF8 YBX3 FXR1 CLASRP SRSF1

2.69e-127171410int:SRPK2
InteractionSRSF6 interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 YBX3 FXR1 CLASRP SRSF1

6.27e-12503149int:SRSF6
InteractionGSPT2 interactions

TRA2B YBX1 BCLAF1 THRAP3 YBX3 SRSF1

5.64e-11107146int:GSPT2
InteractionSUZ12 interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 YBX3 FXR1 SRSF1 PJA1

5.71e-11644149int:SUZ12
InteractionSNRNP70 interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 SRSF8 YBX3 FXR1 CLASRP SRSF1

6.17e-119841410int:SNRNP70
InteractionSRSF7 interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 YBX3 FXR1 SRSF1

9.85e-11425148int:SRSF7
InteractionMAGOH interactions

TRA2B YBX1 THRAP3 SRSF8 YBX3 FXR1 SRSF1

1.94e-10264147int:MAGOH
InteractionLUC7L2 interactions

TRA2B BCLAF1 THRAP3 SRSF8 FXR1 CLASRP SRSF1

1.47e-09353147int:LUC7L2
InteractionCLK2 interactions

TRA2B BCLAF1 THRAP3 SRSF8 CLASRP SRSF1

2.14e-09195146int:CLK2
InteractionU2AF2 interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 YBX3 CLASRP SRSF1

2.87e-09651148int:U2AF2
InteractionRC3H2 interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

3.48e-09667148int:RC3H2
InteractionRC3H1 interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

3.91e-09677148int:RC3H1
InteractionCLK1 interactions

TRA2B BCLAF1 THRAP3 SRSF8 CLASRP SRSF1

4.29e-09219146int:CLK1
InteractionCLK3 interactions

TRA2B BCLAF1 THRAP3 SRSF8 CLASRP SRSF1

4.41e-09220146int:CLK3
InteractionRNF113A interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

4.64e-09692148int:RNF113A
InteractionSRSF9 interactions

TRA2B TDRD5 YBX1 BCLAF1 FXR1 SRSF1

4.92e-09224146int:SRSF9
InteractionLARP4B interactions

YBX1 BCLAF1 PRRC2C SRSF8 FXR1 SRSF1

7.43e-09240146int:LARP4B
InteractionLUC7L interactions

BCLAF1 THRAP3 SRSF8 FXR1 CLASRP SRSF1

7.81e-09242146int:LUC7L
InteractionBTRC interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 YBX3 FXR1 SRSF1

1.13e-08775148int:BTRC
InteractionCLUH interactions

TRA2B PRRC2C THRAP3 YBX3 FXR1 SRSF1

1.28e-08263146int:CLUH
InteractionZC3H18 interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 SRSF8 YBX3 SRSF1

2.96e-08877148int:ZC3H18
InteractionPABPC5 interactions

TRA2B YBX1 SRSF8 YBX3 SRSF1

3.08e-08142145int:PABPC5
InteractionSRSF1 interactions

TRA2B YBX1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

4.03e-08570147int:SRSF1
InteractionBARD1 interactions

TRA2B YBX1 BCLAF1 THRAP3 CLASRP SRSF1

4.36e-08323146int:BARD1
InteractionMYCN interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 CHGB SRSF1

4.51e-081373149int:MYCN
InteractionNKAPD1 interactions

TRA2B BCLAF1 THRAP3 SRSF8 SRSF1

5.78e-08161145int:NKAPD1
InteractionPRC1 interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 YBX3 FXR1 SRSF1

6.65e-08973148int:PRC1
InteractionEED interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 FXR1 CLASRP SRSF1 PJA1

7.04e-081445149int:EED
InteractionPAXIP1 interactions

TRA2B YBX1 BCLAF1 THRAP3 YBX3 SRSF1

8.16e-08359146int:PAXIP1
InteractionHNRNPC interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 SRSF1 PJA1

8.36e-08634147int:HNRNPC
InteractionBRD7 interactions

YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

8.63e-08637147int:BRD7
InteractionKIF23 interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 YBX3 FXR1 SRSF1

1.04e-071031148int:KIF23
InteractionSREK1 interactions

TRA2B YBX1 THRAP3 SRSF8 SRSF1

1.10e-07183145int:SREK1
InteractionRBM39 interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

1.13e-071042148int:RBM39
InteractionKIF20A interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 YBX3 FXR1 SRSF1

1.22e-071052148int:KIF20A
InteractionELAVL2 interactions

TRA2B YBX1 SRSF8 FXR1 SRSF1

1.25e-07188145int:ELAVL2
InteractionPAN2 interactions

YBX1 BCLAF1 THRAP3 SRSF8 YBX3 SRSF1

1.48e-07397146int:PAN2
InteractionSNIP1 interactions

TRA2B BCLAF1 THRAP3 SRSF8 CLASRP SRSF1

1.98e-07417146int:SNIP1
InteractionTHOC1 interactions

TRA2B BCLAF1 THRAP3 FXR1 SRSF1

2.17e-07210145int:THOC1
InteractionNUDCD2 interactions

TRA2B YBX1 THRAP3 FXR1 CHGB SRSF1

2.18e-07424146int:NUDCD2
InteractionCMTR1 interactions

YBX1 BCLAF1 YBX3 FXR1 SRSF1

2.62e-07218145int:CMTR1
InteractionSNRPC interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 SRSF1

2.71e-07440146int:SNRPC
InteractionFUS interactions

TRA2B YBX1 BCLAF1 THRAP3 YBX3 SRSF1 PJA1

2.80e-07757147int:FUS
InteractionTHRAP3 interactions

BCLAF1 THRAP3 SRSF8 YBX3 FXR1 SRSF1

2.82e-07443146int:THRAP3
InteractionSMG6 interactions

PRRC2C THRAP3 FXR1 SRSF1

2.86e-0785144int:SMG6
InteractionZBTB2 interactions

TRA2B BCLAF1 THRAP3 SRSF8 YBX3 FXR1

3.09e-07450146int:ZBTB2
InteractionNDN interactions

TRA2B YBX1 BCLAF1 PRRC2C SRSF1 PJA1

3.22e-07453146int:NDN
InteractionTRIM31 interactions

TRA2B YBX1 THRAP3 YBX3 FXR1 SRSF1

3.26e-07454146int:TRIM31
InteractionELK4 interactions

TRA2B BCLAF1 THRAP3 YBX3

3.93e-0792144int:ELK4
InteractionSRPK1 interactions

TRA2B BCLAF1 THRAP3 SRSF8 YBX3 SRSF1

4.36e-07477146int:SRPK1
InteractionDDRGK1 interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

4.57e-071249148int:DDRGK1
InteractionSNRPA interactions

TRA2B BCLAF1 PRRC2C THRAP3 SRSF8 SRSF1

4.63e-07482146int:SNRPA
InteractionCHCHD2 interactions

YBX1 BCLAF1 PRRC2C THRAP3 YBX3

4.96e-07248145int:CHCHD2
InteractionDANCR interactions

YBX1 YBX3 SRSF1

6.87e-0726143int:DANCR
InteractionSF3B2 interactions

TRA2B YBX1 PRRC2C THRAP3 FXR1 SRSF1

6.98e-07517146int:SF3B2
InteractionCYLD interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3 SRSF1

7.06e-07868147int:CYLD
InteractionSRSF3 interactions

TRA2B YBX1 THRAP3 SRSF8 YBX3 SRSF1

7.38e-07522146int:SRSF3
InteractionSF3A2 interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF1

7.97e-07273145int:SF3A2
InteractionECT2 interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF8 YBX3 SRSF1

8.18e-07887147int:ECT2
InteractionFMR1 interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 FXR1

8.62e-07536146int:FMR1
InteractionCAND1 interactions

TRA2B YBX1 BCLAF1 THRAP3 YBX3 FXR1 SRSF1

8.62e-07894147int:CAND1
InteractionPRMT1 interactions

YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1 SRSF1

1.12e-06929147int:PRMT1
InteractionTNIP2 interactions

TRA2B YBX1 BCLAF1 THRAP3 YBX3 SRSF1 PJA1

1.32e-06952147int:TNIP2
InteractionCIT interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 SRSF8 FXR1 SRSF1

1.43e-061450148int:CIT
InteractionATXN2 interactions

TRA2B YBX1 FXR1 CLASRP CHGB

1.54e-06312145int:ATXN2
InteractionSMC5 interactions

YBX1 BCLAF1 PRRC2C THRAP3 YBX3 SRSF1 PJA1

1.83e-061000147int:SMC5
InteractionUFL1 interactions

TRA2B YBX1 BCLAF1 THRAP3 YBX3 FXR1 SRSF1

2.25e-061031147int:UFL1
InteractionHNRNPU interactions

TRA2B YBX1 BCLAF1 THRAP3 YBX3 FXR1 SRSF1

2.31e-061035147int:HNRNPU
InteractionATXN1 interactions

TRA2B BCLAF1 PRRC2C THRAP3 FXR1 CLASRP SRSF1

2.37e-061039147int:ATXN1
InteractionAPOBEC3D interactions

YBX1 THRAP3 SRSF8 YBX3

2.64e-06148144int:APOBEC3D
InteractionBMI1 interactions

YBX1 BCLAF1 PRRC2C THRAP3 YBX3 FXR1

2.87e-06659146int:BMI1
InteractionMAGOHB interactions

TRA2B THRAP3 FXR1 SRSF1

3.17e-06155144int:MAGOHB
InteractionNUPR1 interactions

TRA2B BCLAF1 THRAP3 YBX3 FXR1 SRSF1

3.53e-06683146int:NUPR1
InteractionAATF interactions

BCLAF1 PRRC2C THRAP3 FXR1 SRSF1

3.84e-06376145int:AATF
InteractionWEE2-AS1 interactions

YBX1 BCLAF1 THRAP3 FXR1

3.88e-06163144int:WEE2-AS1
InteractionPABPC1 interactions

TRA2B YBX1 PRRC2C YBX3 FXR1 SRSF1

4.03e-06699146int:PABPC1
InteractionPHAX interactions

YBX1 THRAP3 YBX3 SRSF1

4.27e-06167144int:PHAX
InteractionSNRPF interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF1

4.31e-06385145int:SNRPF
InteractionDDX21 interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 YBX3

4.71e-06718146int:DDX21
InteractionRNF31 interactions

TRA2B YBX1 BCLAF1 THRAP3 SRSF1

5.38e-06403145int:RNF31
InteractionPAIP2B interactions

YBX1 BCLAF1 SRSF1

5.78e-0652143int:PAIP2B
InteractionALYREF interactions

YBX1 BCLAF1 THRAP3 FXR1 SRSF1

6.28e-06416145int:ALYREF
InteractionCHD3 interactions

TRA2B YBX1 BCLAF1 PRRC2C THRAP3 SRSF1

6.39e-06757146int:CHD3
InteractionTNIP1 interactions

TRA2B YBX1 BCLAF1 THRAP3 YBX3 FXR1 SRSF1

6.78e-061217147int:TNIP1
InteractionYWHAG interactions

TRA2B BCLAF1 PRRC2C THRAP3 SRSF8 FXR1 SRSF1

8.01e-061248147int:YWHAG
InteractionBTF3 interactions

TRA2B YBX1 BCLAF1 THRAP3 FXR1 SRSF1

8.71e-06799146int:BTF3
InteractionPSAP interactions

YBX1 BCLAF1 THRAP3 SRSF1

8.72e-06200144int:PSAP
InteractionNELFE interactions

BCLAF1 THRAP3 SRSF8 SRSF1

8.89e-06201144int:NELFE
InteractionDOT1L interactions

TRA2B YBX1 THRAP3 YBX3 FXR1 SRSF1

9.22e-06807146int:DOT1L
InteractionSRSF11 interactions

TRA2B BCLAF1 THRAP3 SRSF1

9.24e-06203144int:SRSF11
InteractionTRIP4 interactions

YBX1 BCLAF1 THRAP3 FXR1

9.80e-06206144int:TRIP4
InteractionRAD18 interactions

TRA2B BCLAF1 PRRC2C THRAP3 SRSF8

9.92e-06457145int:RAD18
InteractionCTCF interactions

YBX1 THRAP3 YBX3 FXR1 SRSF1

1.03e-05461145int:CTCF
InteractionGSK3A interactions

YBX1 BCLAF1 THRAP3 FXR1 SRSF1

1.07e-05464145int:GSK3A
InteractionNFX1 interactions

YBX1 BCLAF1 PRRC2C FXR1 SRSF1

1.09e-05466145int:NFX1
InteractionIK interactions

BCLAF1 THRAP3 FXR1 SRSF1

1.16e-05215144int:IK
InteractionSRSF5 interactions

TRA2B YBX1 SRSF8 YBX3 SRSF1

1.18e-05474145int:SRSF5
InteractionBIRC3 interactions

TRA2B YBX1 BCLAF1 THRAP3 YBX3 FXR1 SRSF1

1.24e-051334147int:BIRC3
InteractionHNRNPK interactions

TRA2B YBX1 BCLAF1 YBX3 FXR1 SRSF1

1.27e-05853146int:HNRNPK
InteractionMIR138-1 interactions

TRA2B YBX1 YBX3

1.30e-0568143int:MIR138-1
CytobandEnsembl 112 genes in cytogenetic band chr1p34

YBX1 THRAP3

3.53e-03294142chr1p34
GeneFamilyY box binding proteins

YBX1 YBX3

5.14e-07382106
GeneFamilyRNA binding motif containing|Serine and arginine rich splicing factors

SRSF8 SRSF1

1.13e-051282737
GeneFamilyRNA binding motif containing

TRA2B SRSF1

3.69e-0321382725
CoexpressionTABULA_MURIS_SENIS_SPLEEN_PROERYTHROBLAST_AGEING

TRA2B YBX1 PRRC2C THRAP3 YBX3 SRSF1

1.51e-051144146MM3843
CoexpressionPUJANA_ATM_PCC_NETWORK

TRA2B YBX1 PRRC2C SRSF8 CLASRP SRSF1

4.64e-051394146M9585
CoexpressionSCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM

SRSF8 YBX3 SRSF1

7.88e-05161143M5075
CoexpressionJISON_SICKLE_CELL_DISEASE_DN

BCLAF1 PRRC2C SRSF8

1.21e-04186143M4911
CoexpressionMILI_PSEUDOPODIA_HAPTOTAXIS_UP

TRA2B BCLAF1 FXR1 SRSF1

1.34e-04523144M12707
CoexpressionGSE21546_WT_VS_SAP1A_KO_DP_THYMOCYTES_DN

TRA2B TDRD5 BCLAF1

1.35e-04193143M7544
CoexpressionGSE29617_CTRL_VS_DAY3_TIV_FLU_VACCINE_PBMC_2008_UP

BCLAF1 PRRC2C SRSF1

1.41e-04196143M4928
CoexpressionMILI_PSEUDOPODIA_HAPTOTAXIS_UP

TRA2B BCLAF1 FXR1 SRSF1

1.45e-04534144MM1054
CoexpressionGSE23321_CD8_STEM_CELL_MEMORY_VS_EFFECTOR_MEMORY_CD8_TCELL_DN

BCLAF1 PRRC2C YBX3

1.48e-04199143M8430
CoexpressionGSE2770_IL12_VS_TGFB_AND_IL12_TREATED_ACT_CD4_TCELL_6H_DN

TRA2B BCLAF1 FXR1

1.48e-04199143M6060
CoexpressionGSE32423_CTRL_VS_IL7_IL4_MEMORY_CD8_TCELL_UP

YBX1 THRAP3 MYORG

1.50e-04200143M5087
CoexpressionBIDUS_METASTASIS_UP

TRA2B YBX1 SRSF1

2.01e-04221143M15866
CoexpressionCAIRO_HEPATOBLASTOMA_CLASSES_UP

YBX1 YBX3 FXR1 SRSF1

2.44e-04612144M4772
CoexpressionLEE_RECENT_THYMIC_EMIGRANT

TRA2B THRAP3 YBX3

2.53e-04239143M17496
CoexpressionRICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP

TRA2B CLASRP SRSF1

2.62e-04242143M904
CoexpressionGRAHAM_CML_QUIESCENT_VS_NORMAL_DIVIDING_UP

TRA2B FXR1

4.45e-0459142M17730
CoexpressionPUJANA_CHEK2_PCC_NETWORK

TRA2B YBX1 PRRC2C SRSF1

5.59e-04761144M11961
CoexpressionDODD_NASOPHARYNGEAL_CARCINOMA_UP

TRA2B YBX1 PRRC2C FXR1 SRSF1

5.89e-041407145M14427
CoexpressionAtlasDevelopingGonad_e12.5_epididymis_emap-29139_top-relative-expression-ranked_1000

TRA2B TDRD5 BCLAF1 PRRC2C THRAP3 CHGB

6.79e-06806146gudmap_developingGonad_e12.5_epididymis_1000
CoexpressionAtlasFacebaseRNAseq_e8.5_Hind Brain Neural Epithelium_top-relative-expression-ranked_2500_k-means-cluster#3

BCLAF1 PRRC2C THRAP3 YBX3 FXR1

1.61e-05532145Facebase_RNAseq_e8.5_Hind Brain Neural Epithelium_2500_K3
CoexpressionAtlasDevelopingGonad_e12.5_epididymis_emap-29139_top-relative-expression-ranked_500

TRA2B BCLAF1 PRRC2C CHGB

1.10e-04403144gudmap_developingGonad_e12.5_epididymis_500
CoexpressionAtlasDevelopingGonad_e12.5_ovary_emap-28876_top-relative-expression-ranked_1000

TRA2B BCLAF1 PRRC2C THRAP3 SRSF1

1.16e-04804145gudmap_developingGonad_e12.5_ovary_1000
CoexpressionAtlasDevelopingGonad_e11.5_ovary + mesonephros_emap-3226_top-relative-expression-ranked_1000

TRA2B BCLAF1 PRRC2C CHGB SRSF1

1.23e-04815145gudmap_developingGonad_e11.5_ovary + mesonephros_1000
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_top-relative-expression-ranked_1000

TRA2B PRRC2C CHGB SRSF1 PJA1

1.26e-04818145DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_1000
CoexpressionAtlasDevelopingGonad_e12.5_testes_emap-29069_top-relative-expression-ranked_1000

TDRD5 BCLAF1 THRAP3 SRSF1 PJA1

1.26e-04819145gudmap_developingGonad_e12.5_testes_1000
CoexpressionAtlasfacebase_RNAseq_e10.5_Emin_LatNas_2500_K3

TRA2B BCLAF1 THRAP3 YBX3 MYORG

9.20e-041257145facebase_RNAseq_e10.5_Emin_LatNas_2500_K3
CoexpressionAtlasDevelopingGonad_e16.5_epididymis_emap-29702_k-means-cluster#4_top-relative-expression-ranked_200

TRA2B PRRC2C

1.12e-0376142gudmap_developingGonad_e16.5_epididymis_200_k4
CoexpressionAtlasDevelopingGonad_e11.5_ovary + mesonephros_emap-3226_k-means-cluster#2_top-relative-expression-ranked_1000

TRA2B PRRC2C SRSF1

1.12e-03323143gudmap_developingGonad_e11.5_ovary + mesonephros_k2_1000
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_k-means-cluster#2_top-relative-expression-ranked_1000

TRA2B SRSF1 PJA1

1.19e-03330143DevelopingLowerUrinaryTract_e14.5_ urogenital sinus_emap-6689_k2_1000
CoexpressionAtlasDevelopingGonad_e16.5_epididymis_emap-29702_top-relative-expression-ranked_1000

TRA2B BCLAF1 PRRC2C THRAP3

1.41e-03790144gudmap_developingGonad_e16.5_epididymis_1000
CoexpressionAtlasDevelopingGonad_e16.5_ovary_emap-9563_top-relative-expression-ranked_1000

TRA2B TDRD5 BCLAF1 PRRC2C

1.45e-03795144gudmap_developingGonad_e16.5_ovary_1000
CoexpressionAtlasDevelopingGonad_P2_epididymis_emap-30199_top-relative-expression-ranked_1000

TRA2B BCLAF1 PRRC2C THRAP3

1.46e-03797144gudmap_developingGonad_P2_epididymis_1000
CoexpressionAtlasDevelopingGonad_e18.5_epididymis_emap-13166_top-relative-expression-ranked_1000

TRA2B BCLAF1 PRRC2C THRAP3

1.47e-03799144gudmap_developingGonad_e18.5_epididymis_1000
CoexpressionAtlasDevelopingGonad_e14.5_ epididymis_emap-29141_top-relative-expression-ranked_1000

TRA2B BCLAF1 PRRC2C THRAP3

1.49e-03801144gudmap_developingGonad_e14.5_ epididymis_1000
CoexpressionAtlasDevelopingGonad_e14.5_ testes_emap-6710_top-relative-expression-ranked_1000

TDRD5 BCLAF1 SRSF1 PJA1

1.64e-03822144gudmap_developingGonad_e14.5_ testes_1000
CoexpressionAtlasDevelopingGonad_e11.5_testes_emap-3226_top-relative-expression-ranked_1000

BCLAF1 PRRC2C SRSF1 PJA1

1.79e-03843144gudmap_developingGonad_e11.5_testes_1000
CoexpressionAtlasfacebase_RNAseq_e10.5_Emin_LatNas_2500

TRA2B BCLAF1 THRAP3 YBX3 MYORG

1.80e-031459145facebase_RNAseq_e10.5_Emin_LatNas_2500
CoexpressionAtlasDevelopingLowerUrinaryTract_e14.5_ bladder_emap-30872_k-means-cluster#5_top-relative-expression-ranked_1000

TRA2B SRSF1 PJA1

2.03e-03397143gudmap_developingLowerUrinaryTract_e14.5_ bladder_1000_k5
CoexpressionAtlasDevelopingGonad_e18.5_epididymis_emap-13166_k-means-cluster#1_top-relative-expression-ranked_1000

BCLAF1 THRAP3

2.12e-03105142gudmap_developingGonad_e18.5_epididymis_1000_k1
CoexpressionAtlasDevelopingGonad_e16.5_epididymis_emap-29702_top-relative-expression-ranked_500

TRA2B BCLAF1 PRRC2C

2.16e-03406143gudmap_developingGonad_e16.5_epididymis_500
CoexpressionAtlasDevelopingGonad_e14.5_ epididymis_emap-29141_top-relative-expression-ranked_500

TRA2B BCLAF1 PRRC2C

2.27e-03413143gudmap_developingGonad_e14.5_ epididymis_500
ToppCelldroplet-Large_Intestine-COLON_PROXIMAL|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

YBX1 PRRC2C THRAP3 YBX3

3.05e-0719114460c986d2dcbc19d9338c03da6cb5e1d92fd48f8e
ToppCelldroplet-Large_Intestine-COLON_PROXIMAL-30m|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

YBX1 PRRC2C THRAP3 YBX3

3.05e-07191144973117730d6ba5f127e7a0bfabfd0ff2ca7ac131
ToppCellBrain_organoid-organoid_Tanaka_cellReport-6m-Neuronal-Intermediate|6m / Sample Type, Dataset, Time_group, and Cell type.

BCLAF1 PRRC2C YBX3 FXR1

3.66e-072001447c261e39ac30b318511373ab7302aa53b8b81b9c
ToppCelldroplet-Marrow-nan-3m|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

BCLAF1 PRRC2C THRAP3

2.37e-051841431154a5ad7b8512272b7476f949ddac350910bfb7
ToppCellBrain_organoid-organoid_Kanton_Nature|Brain_organoid / Sample Type, Dataset, Time_group, and Cell type.

TRA2B PRRC2C PJA1

2.41e-05185143857c7ca8493e91ef1d0078ddafd6082020f9b169
ToppCelldroplet-Large_Intestine-COLON_PROXIMAL-30m-Epithelial|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

YBX1 PRRC2C YBX3

2.65e-0519114309db184cb90fe282a14474d7217068c58092c6f8
ToppCellmetastatic_Brain-T/NK_cells-Exhausted_CD8+_T|T/NK_cells / Location, Cell class and cell subclass

TRA2B PRRC2C YBX3

2.65e-051911432ffd40ebf1d63e61a97208ddcbeb6a86e409f9d8
ToppCelldroplet-Tongue-TONGUE-1m-Epithelial-suprabasal_differentiating|Tongue / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

BCLAF1 PRRC2C THRAP3

2.73e-0519314349f4fbec91acda4727703e0e359ed780eefb8a22
ToppCellfacs-Thymus-nan-3m-Lymphocytic|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

TDRD5 PRRC2C SRSF1

2.77e-0519414366c056232ac216780acf4cc8ea325bd8ed1909c9
ToppCellfacs-Thymus-nan-3m|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

TDRD5 PRRC2C SRSF1

2.77e-05194143f1661f9f2439fca5c1012c693b0744c4e3b90a9b
ToppCellfacs-Thymus-nan|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

TDRD5 PRRC2C SRSF1

2.77e-05194143cda1b197efb199330ea7ab25a7cee22cae22589d
ToppCelldroplet-Limb_Muscle-MUSCLE|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

BCLAF1 PRRC2C THRAP3

2.77e-05194143e3d63874111d1e8da3977329426e4dcf68d6de87
ToppCellControl-Classical_Monocyte-cMono_2|Classical_Monocyte / Disease condition and Cell class

TRA2B BCLAF1 PRRC2C

2.90e-05197143eb7610c9496a95a5fd866e16abcbc39b83abe617
ToppCellPBMC_fresh-frozen|World / Compartment, severity and other cell annotations on 10x 3' data (130k)

TRA2B YBX1 PRRC2C

2.95e-05198143dcc223a0396b8b673e4ed8c6733ec6cd74e9a03a
ToppCellCOVID-19_Convalescent-Classical_Monocyte-cMono_2|Classical_Monocyte / Disease condition and Cell class

TRA2B YBX1 YBX3

2.99e-051991433feee9f53860b4b2e93ff2360beb2b2b74f51d24
ToppCellhuman_hepatoblastoma-Tumor_cells-T9|Tumor_cells / Sample and Cell Type and Tumor Cluster (all cells)

TRA2B YBX3 FXR1

2.99e-05199143e9c83555d2197b740797a9f33b64f8f7a7ba1ee2
ToppCellsevere|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class

TRA2B BCLAF1 PRRC2C

3.04e-05200143accc618d6b960bff30cb531c1226295bfc8650f6
ToppCellmild|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class

TRA2B BCLAF1 PRRC2C

3.04e-0520014312f1685ce8f218433068e090c9d839cd5a1910bf
ToppCellCOVID-19|World / Disease, condition lineage and cell class

TRA2B BCLAF1 PRRC2C

3.04e-052001437dec470c379cd89f05a0f37c8628b21f136e52f0
ToppCell343B-Lymphocytic-NK_cells-NK_cell_B|Lymphocytic / Donor, Lineage, Cell class and subclass (all cells)

MYORG PJA1

9.53e-041481421d9fa6b2ee9feaed39c63d44e638b5c0942d947c
ToppCellBALF-PFMC-Severe-critical_progression_d12-22_no-steroids-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD4_c06-NR4A2|Severe-critical_progression_d12-22_no-steroids / Compartment, severity and other cell annotations on 10x 3' data (130k)

THRAP3 CHGB

1.00e-031521425adcdf93fd3ca066402aaaf308c363e4648f871d
ToppCellGlobus_pallidus-Macroglia-POLYDENDROCYTE-P3-Tnr-Polydendrocyte.Tnr.Cyth3_(Cyth3)|Globus_pallidus / BrainAtlas - Mouse McCarroll V32

TRA2B THRAP3

1.02e-0315314288ca2d2c2ab19fbee13e18951b993ee05dd30f67
ToppCellGlobus_pallidus-Macroglia-POLYDENDROCYTE-P3-Tnr-Polydendrocyte.Tnr.Cyth3_(Cyth3)-|Globus_pallidus / BrainAtlas - Mouse McCarroll V32

TRA2B THRAP3

1.02e-03153142553dff9688a1996d8f4ba16e60c683593d781389
ToppCell10x5'-GI_large-bowel-Lymphocytic_T_CD8-Trm/em_CD8|GI_large-bowel / Manually curated celltypes from each tissue

YBX3 CLASRP

1.07e-03157142d85304af4cd3b8aaedc5362a8223537e1b9dbec2
ToppCellfacs-Limb_Muscle-forelimb_and_hindlimb-18m-Myeloid-macrophage|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

TDRD5 CHGB

1.15e-0316314257f02f2b9ce940a2962bb57cd8d02eb67b6f44a3
ToppCellfacs-Limb_Muscle-forelimb_and_hindlimb-18m-Myeloid|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

TDRD5 CHGB

1.15e-03163142155ac52a34e0d55545aab8a3e4162fc4c387e697
ToppCellfacs-Limb_Muscle-forelimb_and_hindlimb-18m-Myeloid-nan|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

TDRD5 CHGB

1.15e-03163142c132fb5b56186a10d33ae5ce17b2a7e670d52f79
ToppCellfacs-Spleen-nan-24m|Spleen / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

YBX3 CHGB

1.18e-03165142966ed14d479e0f1a507f46d08408aa99bd7682ae
ToppCellLPS-antiTNF-Endothelial-Mes-Like-Gen_Cap|LPS-antiTNF / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2

SRSF8 YBX3

1.20e-031661423b750d4023a0a09d86113aae5a97d84391f7b482
ToppCelldroplet-Pancreas-Endocrine-18m-Epithelial-nan|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

CHGB SRSF1

1.20e-0316614266026988509e39e41274fa0de738383219e8ff30
ToppCellfacs-Tongue-nan-24m-Epithelial|Tongue / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

YBX1 YBX3

1.21e-0316714273fdf4b81a45ec686d2929eaf641b434f70b7898
ToppCellfacs-Tongue-nan-24m|Tongue / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

YBX1 YBX3

1.21e-03167142c4157fb31b44fe7c44be4215dda8ae2d37cf49a8
ToppCellfacs-Spleen-nan-24m-Lymphocytic|Spleen / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

YBX3 CHGB

1.21e-031671429a8e291c082d7c26bab21df77bd36ce927032a70
ToppCell10x3'2.3-week_12-13-Lymphocytic_T-T_NK-Treg|week_12-13 / cell types per 3 fetal stages;per 3',per 5'

MYORG CHGB

1.22e-0316814299117480687e2b8e7521d3ae9e020791757ec48e
ToppCell10x_3'_v3-tissue-resident_(10x_3'_v3)-hematologic-hematopoietic_progenitor-erythroid_progenitor_cell|tissue-resident_(10x_3'_v3) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type

YBX3 CHGB

1.25e-0317014274bb46826141bd1e80b4ce16e6bbfc770bd427d3
ToppCell10x_3'_v3-tissue-resident_(10x_3'_v3)-hematologic-hematopoietic_progenitor|tissue-resident_(10x_3'_v3) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type

YBX3 CHGB

1.25e-031701426592ebe204b43b81c6b6da99e05da72c0983b3fa
ToppCell3'-GW_trimst-1.5-SmallIntestine-Epithelial-neuro-epithelial|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

TDRD5 CHGB

1.30e-0317314246ed379571385684145b5cb6dd4ae340ac546e64
ToppCelldroplet-Heart-nan-3m|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

PRRC2C THRAP3

1.34e-03176142749b47eac5436fa34e0d243ffbc6f1897f4e431e
ToppCellBrain_organoid-organoid_Kanton_Nature-Organoid-2M-Radial_glial-RGCs_early_1|Organoid-2M / Sample Type, Dataset, Time_group, and Cell type.

YBX1 YBX3

1.34e-031761422a15437c5f5dbf6398d5ea70050632c24a7dc66c
ToppCell3'-GW_trimst-1.5-SmallIntestine-Epithelial-neuro-epithelial-K_cells_(GIP+)|GW_trimst-1.5 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

TDRD5 CHGB

1.36e-0317714243dce527392f3b8364bb6a55268ce9d6518d3a29
ToppCelldroplet-Limb_Muscle-MUSCLE-30m|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

BCLAF1 PRRC2C

1.37e-0317814201dafd19de04eff459253eaa9a35debf8f3deedf
ToppCellBALF-PFMC-Severe-critical_progression_d12-22_with-steroid-Lymphocytic-Lymphocytic_T-mature_alpha-beta_T_cell-T_CD8_c01-LEF1|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)

PRRC2C YBX3

1.37e-0317814273936c2e7e8855b4ab65cad425686513dba331a3
ToppCellfacs-Heart-RA-18m|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

THRAP3 YBX3

1.37e-03178142b505e2550860e777535ee95f29c936242fd607f1
ToppCelldroplet-Liver-LIVER_HEP|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

PRRC2C CHGB

1.40e-03180142423454e3390080ae03bb3cbb267255ebfe4df080
ToppCelldroplet-Liver-LIVER_HEP-30m|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

PRRC2C CHGB

1.40e-03180142dd1b10c7f5a0fbc63163844ca1882884a24a84d3
ToppCellILEUM-inflamed-(1)_T_cell-(1)_CD8_Trm|(1)_T_cell / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)

TRA2B BCLAF1

1.47e-03184142cef3ee2a4a0af961aa3b4c92150d423e841ae8c1
ToppCellTCGA-Lung-Primary_Tumor-Lung_Carcinoma-Lung_Squamous_Cell_Carcinoma-3|TCGA-Lung / Sample_Type by Project: Shred V9

TRA2B FXR1

1.47e-03184142ea4ccebe2d54279fcc517e4f0bfa652b91a808bb
ToppCelldroplet-Bladder-nan|Bladder / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation

TRA2B PRRC2C

1.51e-03187142663991a8afe652e92363b64bcbd68c14d0307f0e
ToppCelldroplet-Tongue-nan|Tongue / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

TRA2B PRRC2C

1.53e-03188142d62cc37e86b7b186e53aeb7f421c4e5ee28f23bd
ToppCellHippocampus-Macroglia-POLYDENDROCYTE|Hippocampus / BrainAtlas - Mouse McCarroll V32

TRA2B YBX1

1.53e-031881428bd6f2cd1aadbd6f9ed31b160f59c1eff144e1dc
ToppCellILEUM-non-inflamed-(1)_T_cell-(1)_CD8_Trm|(1)_T_cell / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)

TRA2B BCLAF1

1.55e-031891422c8a2fb76ea002bac554bc1c761ce960b5e116e1
ToppCelldroplet-Large_Intestine-COLON_PROXIMAL-30m-Epithelial-Lgr5-_amplifying_undifferentiated_cell|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

THRAP3 YBX3

1.56e-0319014236e83995021ba16690f84e2077a9e8baec547d05
ToppCelldroplet-Large_Intestine-COLON_PROXIMAL-30m-Epithelial-epithelial_cell_of_large_intestine|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

THRAP3 YBX3

1.56e-03190142d26be9e1b676f750e716b91ebc3598fac3735612
ToppCelldroplet-Pancreas-Endocrine-21m-Epithelial-pancreatic_D_cell|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

CHGB PJA1

1.56e-03190142e792e42fc49472eaf974eb0905819eb51a1da8e5
ToppCelldroplet-Limb_Muscle-MUSCLE-30m-Mesenchymal-nan|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

BCLAF1 PRRC2C

1.58e-031911427d1595e616f6f111fc2f5bc1b179c5d67d624cc9
ToppCellPBMC_fresh-frozen-Mild-Moderate_progression_d12-25|PBMC_fresh-frozen / Compartment, severity and other cell annotations on 10x 3' data (130k)

BCLAF1 PRRC2C

1.58e-031911421ecd9849d14d5ebf3daf610e83fb50820cafd3ed
ToppCellBrain_organoid-organoid_Kanton_Nature-Organoid-2M-Neuronal-ventral_progenitors_and_neurons_2|Organoid-2M / Sample Type, Dataset, Time_group, and Cell type.

YBX1 PJA1

1.58e-03191142509d17d8ee0d028757ce0f2c9b97e5875f06f0ab
ToppCellBrain_organoid-organoid_Paulsen_bioRxiv|Brain_organoid / Sample Type, Dataset, Time_group, and Cell type.

YBX1 SRSF8

1.58e-03191142e0072b392f8833fab5e1006148c46a17cce894bc
ToppCelldroplet-Limb_Muscle-MUSCLE-30m-Mesenchymal-mesenchymal_stem_cell|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

BCLAF1 PRRC2C

1.59e-0319214211088878043a6ff95ba1970361256a82e434b80a
ToppCellCF-Myeloid-Monocyte|Myeloid / Disease state, Lineage and Cell class

YBX1 YBX3

1.59e-03192142da55719454b800b7e0cd6d5afd6332ecc5553218
ToppCelldroplet-Pancreas-Endocrine-21m-Epithelial-pancreatic_D_cell|Pancreas / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

CHGB PJA1

1.59e-03192142550a6574a93acadb43c449094565c73ca51a0c5c
ToppCell343B-Lymphocytic-B_cell|Lymphocytic / Donor, Lineage, Cell class and subclass (all cells)

YBX1 YBX3

1.61e-03193142361174a7b54c4d564b8f15000edc1b9d6a887739
ToppCell343B-Lymphocytic-B_cell-|Lymphocytic / Donor, Lineage, Cell class and subclass (all cells)

YBX1 YBX3

1.61e-031931428cbde0cc50643525b2744c9800e62fddc5eafcc5
ToppCellCOVID-19_Mild|World / Disease condition and Cell class

BCLAF1 PRRC2C

1.61e-031931427256a5a491536c525b31ae96d47ab5c6303cb73a
ToppCelldroplet-Marrow-nan-3m-Myeloid-granulocytopoietic_cell|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

PRRC2C THRAP3

1.63e-031941428ef0b71fef5b84cfd04973f891215333e7035d1d
ToppCell10x3'2.3|World / cell types per 3 fetal stages;per 3',per 5'

TRA2B YBX3

1.63e-03194142fc7ed8350ffe1475b8934dfbb107b51991876b0b
ToppCellfacs-Thymus-nan-3m-Lymphocytic-thymocyte|Thymus / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

TDRD5 SRSF1

1.64e-0319514279114b3c78cc15c413bb58f0673e7215b784a9b6
ToppCelldroplet-Limb_Muscle-MUSCLE-30m-Mesenchymal|Limb_Muscle / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

BCLAF1 PRRC2C

1.64e-031951425c86fddd6d0530beecf45ea5ba6b823123847696
ToppCelltumor_Lung-Endothelial_cells-Stalk-like_ECs|Endothelial_cells / Location, Cell class and cell subclass

TRA2B YBX3

1.64e-0319514256f88ce95495260360bf08f9c76cc36e395dc6a9
ToppCellfrontal_cortex-Neuronal|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

CHGB PJA1

1.66e-03196142de7d10da862f98894ce47244fbc992f4a12d63bb
ToppCelllymphoid-T_cell-unlabelled(multiplets)|World / Lineage, cell class and subclass

TRA2B YBX1

1.66e-0319614278b006922307c154622d71fcbc79ae5eed3f4b23
ToppCellmild_COVID-19_(asymptomatic)-B_naive|mild_COVID-19_(asymptomatic) / disease group, cell group and cell class (v2)

THRAP3 YBX3

1.66e-03196142c87499aa570f8fab878c4c015e47c711a3a21e9c
ToppCell3'|World / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

YBX1 YBX3

1.66e-0319614244007f0c14e0f0703f7ee715b8eababb4d80a8b5
ToppCelldroplet-Tongue-TONGUE-1m-Epithelial-basal_cell_of_epidermis|Tongue / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

YBX1 PRRC2C

1.66e-03196142d4df86ce289835e76763213641989fde77935a16
ToppCellCOVID-19_Severe-Classical_Monocyte-cMono_3|Classical_Monocyte / Disease condition and Cell class

TRA2B BCLAF1

1.66e-031961427c3a99f0893c43d8c7980b560503844573d3b03c
ToppCellCOVID-19_Severe|World / Disease condition and Cell class

TRA2B PRRC2C

1.66e-03196142450ac2aff89c5ca73b8bfbc80663e03be066931f
ToppCellprimary_visual_cortex-Neuronal|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

CHGB PJA1

1.66e-031961428efc2b3a95f57c31be203ac781b2098d4909297f
ToppCellCOVID-19_Mild|World / Disease group, lineage and cell class

BCLAF1 PRRC2C

1.68e-031971425c33454b10023decd2f5ccda9229b6512659711e
ToppCell10x_3'_v2v3-Neoplastic-Stem-like-NPC-like-NPC-like_OPC-F|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group

TRA2B YBX1

1.68e-03197142d9a5b6171867de21d4ef12aa5a802fb4de9e0c00
ToppCell10x3'2.3-week_17-19|World / cell types per 3 fetal stages;per 3',per 5'

TRA2B YBX3

1.68e-03197142f5cfad0b42d0f817e22cc78b9bfb2b4b7e4330ed
ToppCelllymphoid-T_cell-unlabelled(multiplets)|lymphoid / Lineage, cell class and subclass

TRA2B YBX1

1.68e-03197142a224c0a010489ad043bd2ad1385eef33c3b6b792
ToppCellmoderate-Epithelial-Basal|moderate / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

YBX1 YBX3

1.68e-031971426c81bcf6e16ffa7df40e2339feb3362ec3af8837
ToppCelllymphoid-T_cell-unlabelled(multiplets)|T_cell / Lineage, cell class and subclass

TRA2B YBX1

1.68e-03197142f215435aee15f0ed254104bfd55670144b6d2ac3
ToppCellParenchymal-10x5prime-Hematologic-Erythrocyte|10x5prime / Cell types per location group and 10X technology with lineage, and cell group designations

YBX1 YBX3

1.69e-031981422a00648d3aa5843d9e924e054c5e973025f86e97
ToppCellCOVID-19_Mild|World / Disease condition and Cell class

BCLAF1 PRRC2C

1.69e-0319814261ceb2245b6cb58e308b999a61d218c89dbc615e
ToppCell10x3'2.3-week_17-19-Lymphocytic_B|week_17-19 / cell types per 3 fetal stages;per 3',per 5'

TRA2B YBX3

1.69e-031981425f465cf5c7493e32d9afe9e9d05757d0a95acc33
ToppCellParenchymal-10x5prime-Hematologic-Erythrocyte-Erythrocyte|10x5prime / Cell types per location group and 10X technology with lineage, and cell group designations

YBX1 YBX3

1.69e-03198142745e966fd52f06485061727cdbd9358b9df7d97d
ToppCellParenchymal-10x5prime-Hematologic|10x5prime / Cell types per location group and 10X technology with lineage, and cell group designations

YBX1 YBX3

1.69e-0319814224b1138746dd69d1cda419f7070ef5a402d07563
ToppCellPBMC-Mild|PBMC / Location, Disease Group, Cell group, Cell class (2021.03.09)

BCLAF1 PRRC2C

1.69e-0319814244417089b62056269cac38d3134ff209c05b7007
ToppCellNeuron-Postmitotic-Excitatory_Neuron_-Newborn-35|World / Primary Cells by Cluster

BCLAF1 PRRC2C

1.69e-03198142de5214a85fe017eb23d4aa8af624464f062ec57e
ToppCellmLN-T_cell-Activated_CD4_T|T_cell / Region, Cell class and subclass

TRA2B BCLAF1

1.69e-03198142404ec46bd39b6f4d02a03ef38c30850bbbd8b608
ToppCellSmart-seq2-thymus_(Smart-seq2)-myeloid|thymus_(Smart-seq2) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type

YBX1 YBX3

1.69e-031981422e470249edc7cf85bed550795ff84cbef22895c0
ToppCellPBMC|World / Compartment, Disease Groups and Clusters

TRA2B BCLAF1

1.69e-0319814284f5b43dad0c57556171dbc0b799735654582ecf
ToppCellCOVID-19_Convalescent-Classical_Monocyte-cMono_2|COVID-19_Convalescent / Disease condition and Cell class

TRA2B YBX3

1.69e-03198142f65fd9b773aeafa55e38309479954a8e41371f52
ToppCellsevere-Myeloid-CD14_Monocytes_3|severe / Cohort 2 (Rhapsody WB + PBMC) with disease condition, lineage and cell classs

YBX1 YBX3

1.69e-03198142374d7a24e00cd3f435ca980123ab3c6a441c9ad5
ToppCellNS-moderate-d_16-33-Epithelial-Basal|d_16-33 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

YBX1 YBX3

1.69e-031981425c52b69d65909b667ef0943e7e04572c9d5b1ba0
ToppCell10x5'-GI_small-bowel-Lymphocytic_T_CD8-Trm_gut_CD8|GI_small-bowel / Manually curated celltypes from each tissue

TRA2B BCLAF1

1.69e-03198142aedd91e734bd919cf6b8c1586ad0cbd6e6d0f2ed
ToppCell10x_3'_v3-bone_marrow_(10x_3'_v3)-hematologic|bone_marrow_(10x_3'_v3) / Per Platform+tissue_group, by lineage_subgroup, cell_group, cell_type

YBX1 YBX3

1.69e-031981428be58e41ae7870d268e7ce5ab937769e2ecb60d9
ToppCell10x3'2.3-week_17-19-Lymphocytic_B-B_lineage|week_17-19 / cell types per 3 fetal stages;per 3',per 5'

TRA2B YBX3

1.69e-0319814277ce3fe1ab161c0faf8987e73a64ab61294b9255
ToppCellPBMC-Mild|PBMC / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

BCLAF1 PRRC2C

1.69e-0319814228ef3fc4c17dcb765537b75917f7db78baa522db
ComputationalNeighborhood of SMC1L1

TRA2B PRRC2C SRSF1

2.92e-0562113MORF_SMC1L1
ComputationalNeighborhood of UBE2N

TRA2B PRRC2C SRSF1

1.05e-0495113MORF_UBE2N
ComputationalNeighborhood of APEX1

TRA2B BCLAF1 FXR1

1.80e-04114113GCM_APEX1
ComputationalNeighborhood of ACTG1

TRA2B BCLAF1 FXR1

2.31e-04124113GCM_ACTG1
ComputationalGenes in the cancer module 98.

TRA2B YBX1 YBX3 SRSF1

4.73e-04393114MODULE_98
ComputationalNeighborhood of TDG

TRA2B SRSF1

5.56e-0435112GNF2_TDG
ComputationalNeighborhood of RAD21

TRA2B BCLAF1

6.22e-0437112GCM_RAD21
ComputationalNeighborhood of ANP32B

TRA2B SRSF1

6.22e-0437112GNF2_ANP32B
ComputationalNeighborhood of ACP1

TRA2B YBX1 PRRC2C

1.10e-03211113MORF_ACP1
ComputationalNeighborhood of DEK

TRA2B SRSF1

1.53e-0358112GNF2_DEK
ComputationalTFs and nuclear.

TRA2B YBX1 SRSF1

1.53e-03237113MODULE_252
ComputationalGenes in the cancer module 32.

TRA2B YBX1 YBX3

1.61e-03241113MODULE_32
ComputationalNeighborhood of MCM5

TRA2B SRSF1

1.69e-0361112GNF2_MCM5
ComputationalNeighborhood of DDX5

TRA2B BCLAF1

1.91e-0365112GCM_DDX5
ComputationalRNA splicing.

TRA2B SRSF1

1.91e-0365112MODULE_183
ComputationalNeighborhood of DEK

TRA2B PRRC2C SRSF1

2.09e-03264113MORF_DEK
ComputationalGenes in the cancer module 198.

TRA2B YBX1 SRSF1

3.09e-03303113MODULE_198
ComputationalNeighborhood of APEX1

TRA2B SRSF1

3.79e-0392112GNF2_APEX1
ComputationalNeighborhood of RRM1

TRA2B SRSF1

4.64e-03102112MORF_RRM1
ComputationalNeighborhood of PTPN11

PRRC2C SRSF1

5.19e-03108112MORF_PTPN11
ComputationalNeighborhood of HDAC1

TRA2B SRSF1

5.37e-03110112GNF2_HDAC1
ComputationalNeighborhood of DNMT1

TRA2B SRSF1

6.16e-03118112MORF_DNMT1
ComputationalNeighborhood of DAP3

TRA2B SRSF1

6.26e-03119112GNF2_DAP3
ComputationalNeighborhood of FBL

TRA2B SRSF1

9.30e-03146112GNF2_FBL
DiseaseMalignant neoplasm of breast

YBX1 FXR1 CLASRP SRSF1

1.30e-031074144C0006142
DiseaseCOVID-19, mortality

MYORG FXR1

2.87e-03170142EFO_0004352, MONDO_0100096

Protein segments in the cluster

PeptideGeneStartEntry
IYSGPRSHRRVPYRG

TDRD5

111

Q8NAT2
RSYSGRGRGRRGPNY

FXR1

381

P51114
YRNNRGMRRPYGYRG

BCLAF1

61

Q9NYF8
RYRGRGSEEYRAPRP

CHGB

361

P05060
RGRGRGEYYSRGRSY

PRRC2C

1186

Q9Y520
RGSRYSRSPYSRSPY

SRSF8

151

Q9BRL6
RRAPQYTFGYRRPYR

ODF3L1

136

Q8IXM7
HRYSRSPARRGGYGP

CLASRP

451

Q8N2M8
HNRGYRRPYYFRGRN

THRAP3

76

Q9Y2W1
RRPYYFRGRNRGFYP

THRAP3

81

Q9Y2W1
RYRRGYYGRRRGPPR

YBX3

176

P16989
YYGRRRGPPRNYAGE

YBX3

181

P16989
RPYRRRRFPPYYMRR

YBX1

186

P67809
RRFPPYYMRRPYGRR

YBX1

191

P67809
YSPRRSRGSPRYSPR

SRSF1

226

Q07955
YSRYPPREYRASGSR

PJA1

96

Q8NG27
RRRSPSPYYSRGGYR

TRA2B

261

P62995
SPYYSRGGYRSRSRS

TRA2B

266

P62995
AYPRRRRPGCYAYRQ

MYORG

11

Q6NSJ0