Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctionchromatin binding

ARID1B CEBPA GLI1 GATA2 FOXP1 CHD7 TCF7L1 EP300 BAHCC1

1.28e-04739539GO:0003682
GeneOntologyMolecularFunctiontranscription coactivator binding

FLYWCH1 GATA2 EP300

3.98e-0454533GO:0001223
GeneOntologyMolecularFunctiontranscription coregulator binding

FLYWCH1 GATA2 FOXP1 EP300

5.19e-04140534GO:0001221
GeneOntologyMolecularFunctionSTAT family protein binding

CEBPA EP300

5.29e-0413532GO:0097677
GeneOntologyBiologicalProcessepithelial cell development

CEBPA NTRK1 GATA2 SDC1 HYDIN NOTCH2

6.39e-05269536GO:0002064
GeneOntologyBiologicalProcessregulation of developmental growth

ATXN2 GLI1 CDKL3 FOXP1 CHD7 RIMS1 EP300

9.63e-05421537GO:0048638
GeneOntologyBiologicalProcessrespiratory system development

CEBPA GLI1 FOXP1 CHD7 HYDIN EP300

1.27e-04305536GO:0060541
GeneOntologyBiologicalProcesspositive regulation of hydrogen peroxide-mediated programmed cell death

FOXP1 EP300

1.35e-047532GO:1901300
GeneOntologyBiologicalProcessolfactory nerve development

NTRK1 CHD7

1.80e-048532GO:0021553
GeneOntologyBiologicalProcessneuron projection morphogenesis

OTX2 SEMA5B ATXN2 NTRK1 CDKL3 FOXP1 RIMS1 EP300 NOTCH2

1.85e-04802539GO:0048812
GeneOntologyBiologicalProcessaxis specification

OTX2 PKD1L1 TCF7L1 NOTCH2

2.03e-04113534GO:0009798
GeneOntologyBiologicalProcessmononuclear cell differentiation

ARID1B CEBPA NTRK1 GATA2 FOXP1 CHD7 EP300 NOTCH2

2.12e-04640538GO:1903131
GeneOntologyBiologicalProcessplasma membrane bounded cell projection morphogenesis

OTX2 SEMA5B ATXN2 NTRK1 CDKL3 FOXP1 RIMS1 EP300 NOTCH2

2.16e-04819539GO:0120039
GeneOntologyBiologicalProcesscell projection morphogenesis

OTX2 SEMA5B ATXN2 NTRK1 CDKL3 FOXP1 RIMS1 EP300 NOTCH2

2.31e-04826539GO:0048858
GeneOntologyBiologicalProcessembryonic organ morphogenesis

ALX3 OTX2 GLI1 GATA2 CHD7 NOTCH2

2.72e-04351536GO:0048562
GeneOntologyBiologicalProcesscell fate determination

OTX2 GATA2 NOTCH2

2.88e-0450533GO:0001709
GeneOntologyBiologicalProcessepithelial cell differentiation

OTX2 CEBPA GLI1 NTRK1 GATA2 FOXP1 SDC1 HYDIN NOTCH2

3.38e-04870539GO:0030855
GeneOntologyBiologicalProcesssemicircular canal development

GATA2 CHD7

3.51e-0411532GO:0060872
GeneOntologyBiologicalProcesspattern specification process

ALX3 OTX2 GLI1 PKD1L1 TCF7L1 EP300 NOTCH2

3.76e-04526537GO:0007389
HumanPhenoDuplication of phalanx of hallux

EP300 KIF7 KIAA0753

5.79e-0514293HP:0010066
HumanPhenoDuplication of phalanx of toe

EP300 KIF7 KIAA0753

7.21e-0515293HP:0010181
HumanPhenoRadial deviation of thumb terminal phalanx

GLI1 EP300

9.36e-053292HP:0005895
HumanPhenoAbdominal situs inversus

OTX2 PIEZO2 GLI1 PKD1L1 HYDIN KIAA0753

1.18e-04142296HP:0003363
HumanPhenoSitus inversus totalis

OTX2 PIEZO2 GLI1 PKD1L1 HYDIN KIAA0753

1.18e-04142296HP:0001696
HumanPhenoAbnormal spatial orientation of the cardiac segments

OTX2 PIEZO2 GLI1 PKD1L1 HYDIN KIAA0753

1.18e-04142296HP:0011534
HumanPhenoAbnormality of abdominal situs

OTX2 PIEZO2 GLI1 PKD1L1 HYDIN KIAA0753

1.18e-04142296HP:0011620
HumanPhenoHeterotaxy

OTX2 PIEZO2 GLI1 PKD1L1 HYDIN KIAA0753

1.33e-04145296HP:0030853
HumanPhenoCompulsive behaviors

ARID1B NTRK1 FOXP1 CHD7 DMPK EP300

2.13e-04158296HP:0000722
HumanPhenoDislocated radial head

ARID1B CHD7 EP300 NOTCH2

2.20e-0454294HP:0003083
HumanPhenoDextrocardia

OTX2 PIEZO2 GLI1 PKD1L1 HYDIN KIAA0753

2.20e-04159296HP:0001651
HumanPhenoAbnormal anatomic location of the heart

OTX2 PIEZO2 GLI1 PKD1L1 HYDIN KIAA0753

2.28e-04160296HP:0004307
HumanPhenoAbnormality of the radial head

ARID1B CHD7 EP300 NOTCH2

2.72e-0457294HP:0003995
MousePhenoabnormal embryonic growth/weight/body size

ALX3 ELOA OTX2 PIEZO2 FLYWCH1 PEG10 PKD1L1 GATA2 BICRAL CPD CHD7 TCF7L1 EP300 NOTCH2 KIAA0753 ZNF503

1.82e-0612954616MP:0002088
MousePhenoembryonic growth retardation

ALX3 ELOA OTX2 PEG10 PKD1L1 GATA2 BICRAL CHD7 EP300 NOTCH2 KIAA0753 ZNF503

4.47e-067634612MP:0003984
MousePhenoabnormal prenatal growth/weight/body size

ALX3 ELOA OTX2 PIEZO2 FLYWCH1 PEG10 PKD1L1 GATA2 BICRAL CPD CHD7 TCF7L1 EP300 NOTCH2 KIAA0753 ZNF503

1.16e-0514934616MP:0004196
MousePhenoprenatal growth retardation

ALX3 ELOA OTX2 PEG10 PKD1L1 GATA2 BICRAL CHD7 EP300 NOTCH2 KIAA0753 ZNF503

1.68e-058694612MP:0010865
MousePhenodecreased embryonic neuroepithelium thickness

ELOA OTX2 CHD7

3.66e-0520463MP:0012703
MousePhenoedema

ARID1B PKD1L1 FOXP1 CHD7 TCF7L1 EP300 NOTCH2 KIF7 ZNF503

9.66e-05581469MP:0001785
MousePhenoabnormal embryo turning

ELOA PKD1L1 BICRAL CHD7 EP300 KIAA0753

1.62e-04251466MP:0001700
MousePhenolethality during fetal growth through weaning, incomplete penetrance

ALX3 OTX2 CEBPA NTRK1 PKD1L1 GATA2 FOXP1 CHD7 TCF7L1 EP300 NOTCH2 BAHCC1

2.05e-0411244612MP:0011112
MousePhenoperinatal lethality

ALX3 ARID1B OTX2 CEBPA GATA2 SCNN1A TCF7L1 EP300 NOTCH2 KIF7 ZNF503 BAHCC1

2.16e-0411304612MP:0002081
DomainTLV_coat

ERVV-2 ERVV-1

1.71e-047542PF00429
DomainTLV/ENV_coat_polyprotein

ERVV-2 ERVV-1

2.27e-048542IPR018154
DomainKinesin_motor_CS

KIF24 KIF7

6.26e-0341542IPR019821
DomainKinesin-like_fam

KIF24 KIF7

6.87e-0343542IPR027640
DomainKINESIN_MOTOR_1

KIF24 KIF7

7.18e-0344542PS00411
Domain-

KIF24 KIF7

7.18e-03445423.40.850.10
DomainKinesin_motor_dom

KIF24 KIF7

7.18e-0344542IPR001752
DomainKinesin

KIF24 KIF7

7.18e-0344542PF00225
DomainKINESIN_MOTOR_2

KIF24 KIF7

7.18e-0344542PS50067
DomainKISc

KIF24 KIF7

7.18e-0344542SM00129
PathwayWP_WHITE_FAT_CELL_DIFFERENTIATION

CEBPA GATA2 TCF7L1

8.49e-0532383M39333
PathwayWP_WHITE_FAT_CELL_DIFFERENTIATION

CEBPA GATA2 TCF7L1

9.32e-0533383MM15869
PathwayWP_CANCER_PATHWAYS

CEBPA GLI1 NTRK1 TCF7L1 EP300 NOTCH2 KIF7

3.57e-04507387M48302
PathwayPID_AR_TF_PATHWAY

CEBPA GATA2 EP300

3.86e-0453383M151
PathwayREACTOME_NOTCH2_INTRACELLULAR_DOMAIN_REGULATES_TRANSCRIPTION

EP300 NOTCH2

4.59e-0412382M27159
PathwayREACTOME_DISEASES_OF_METABOLISM

SEMA5B THSD7B SDC1 NOTCH2 OPLAH

5.24e-04250385M27554
PathwayWP_TRANSCRIPTIONAL_CASCADE_REGULATING_ADIPOGENESIS

CEBPA GATA2

5.42e-0413382M39753
PathwayREACTOME_DISEASES_OF_GLYCOSYLATION

SEMA5B THSD7B SDC1 NOTCH2

5.73e-04143384M27275
PathwayKEGG_MEDICUS_REFERENCE_HEDGEHOG_SIGNALING_PATHWAY

GLI1 KIF7

6.31e-0414382M47414
PathwayREACTOME_DISEASES_ASSOCIATED_WITH_O_GLYCOSYLATION_OF_PROTEINS

SEMA5B THSD7B NOTCH2

8.03e-0468383M27303
PathwayWP_ACUTE_MYELOID_LEUKEMIA

CEBPA GLI1 TCF7L1

8.03e-0468383M48322
PathwayWP_HEDGEHOG_SIGNALING_WP47

GLI1 KIF7

8.29e-0416382M39675
Pubmed

Parcellation of the striatal complex into dorsal and ventral districts.

OTX2 GLI1 FOXP1 ZNF503

6.93e-074257432170006
Pubmed

Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.

ARID1B FOXP1 BICRAL OSMR SIPA1L2 TCF7L1 EP300 NOTCH2 ZNF687 KIF7 BAHCC1

1.69e-061116571131753913
Pubmed

Interaction network of human early embryonic transcription factors.

ARID1B OTX2 FOXP1 CHD7 EP300 ZNF503 BAHCC1

1.72e-0635157738297188
Pubmed

Exome sequencing identifies highly recurrent somatic GATA2 and CEBPA mutations in acute erythroid leukemia.

CEBPA GATA2

2.64e-06257227389056
Pubmed

Bidisomide (SC-40230), a new antiarrhythmic agent: initial study of tolerability and pharmacokinetics.

CEBPA GATA2

2.64e-0625721563207
Pubmed

Pre-B cell to macrophage transdifferentiation without significant promoter DNA methylation changes.

CEBPA EP300

2.64e-06257222086955
Pubmed

p300 coactivates the adipogenic transcription factor CCAAT/enhancer-binding protein alpha.

CEBPA EP300

2.64e-06257211340085
Pubmed

Gene conversion and purifying selection of a placenta-specific ERV-V envelope gene during simian evolution.

ERVV-2 ERVV-1

2.64e-06257218826608
Pubmed

Shed syndecan-1 translocates to the nucleus of cells delivering growth factors and inhibiting histone acetylation: a novel mechanism of tumor-host cross-talk.

SDC1 EP300

2.64e-06257225404732
Pubmed

Allele-specific expression of GATA2 due to epigenetic dysregulation in CEBPA double-mutant AML.

CEBPA GATA2

2.64e-06257233831168
Pubmed

GATA2 zinc finger 1 mutations associated with biallelic CEBPA mutations define a unique genetic entity of acute myeloid leukemia.

CEBPA GATA2

2.64e-06257222649106
Pubmed

Clinical impact of GATA2 mutations in acute myeloid leukemia patients harboring CEBPA mutations: a study of the AML study group.

CEBPA GATA2

2.64e-06257227375010
Pubmed

Mutations of the GATA2 and CEBPA genes in paediatric acute myeloid leukaemia.

CEBPA GATA2

2.64e-06257224033149
Pubmed

Differential evolutionary fate of an ancestral primate endogenous retrovirus envelope gene, the EnvV syncytin, captured for a function in placentation.

ERVV-2 ERVV-1

2.64e-06257223555306
Pubmed

C/EBPα and GATA-2 Mutations Induce Bilineage Acute Erythroid Leukemia through Transformation of a Neomorphic Neutrophil-Erythroid Progenitor.

CEBPA GATA2

2.64e-06257232330454
Pubmed

Classification of CEBPA mutated acute myeloid leukemia by GATA2 mutations.

CEBPA GATA2

2.64e-06257225611491
Pubmed

Proper expression of the Gcn5 histone acetyltransferase is required for neural tube closure in mouse embryos.

OTX2 GLI1 EP300

2.79e-061757318330926
Pubmed

Identification and functional characterization of transcriptional activators in human cells.

ARID1B FOXP1 BICRAL CHD7 EP300 ZNF503 BAHCC1

3.94e-0639857735016035
Pubmed

Tcf/Lef repressors differentially regulate Shh-Gli target gene activation thresholds to generate progenitor patterning in the developing CNS.

GLI1 GATA2 TCF7L1

6.29e-062257321775418
Pubmed

Secondary leukemia in patients with germline transcription factor mutations (RUNX1, GATA2, CEBPA).

CEBPA GATA2

7.91e-06357232430494
Pubmed

CEBPA double-mutated acute myeloid leukaemia harbours concomitant molecular mutations in 76·8% of cases with TET2 and GATA2 alterations impacting prognosis.

CEBPA GATA2

7.91e-06357223521373
Pubmed

CBFβ-SMMHC creates aberrant megakaryocyte-erythroid progenitors prone to leukemia initiation in mice.

GLI1 GATA2

7.91e-06357227443289
Pubmed

Molecular characterization of the intact mouse muscle spindle using a multi-omics approach.

PIEZO2 GLI1

7.91e-06357236744866
Pubmed

Functional regulation of GATA-2 by acetylation.

GATA2 EP300

7.91e-06357215001660
Pubmed

GATA2 is critical for the maintenance of cellular identity in differentiated mast cells derived from mouse bone marrow.

CEBPA GATA2

7.91e-06357225855601
Pubmed

Directed differentiation of telencephalic precursors from embryonic stem cells.

OTX2 FOXP1 ZNF503

9.36e-062557315696161
Pubmed

Murine leukemia retrovirus integration induces the formation of transcription factor complexes on palindromic sequences in the signal transducer and activator of transcription factor 5a gene during the development of pre-B lymphomagenesis.

GATA2 EP300

1.58e-05457221356387
Pubmed

Molecular regulation of the endothelin-1 gene by hypoxia. Contributions of hypoxia-inducible factor-1, activator protein-1, GATA-2, AND p300/CBP.

GATA2 EP300

1.58e-05457211278891
Pubmed

Interaction between GATA and the C/EBP family of transcription factors is critical in GATA-mediated suppression of adipocyte differentiation.

CEBPA GATA2

1.58e-05457215632071
Pubmed

p300-dependent acetylation of activating transcription factor 5 enhances C/EBPβ transactivation of C/EBPα during 3T3-L1 differentiation.

CEBPA EP300

1.58e-05457224216764
Pubmed

Identification of novel candidate genes in heterotaxy syndrome patients with congenital heart diseases by whole exome sequencing.

GLI1 KIF7

1.58e-05457232738303
Pubmed

Genome-wide characterisation of Foxa1 binding sites reveals several mechanisms for regulating neuronal differentiation in midbrain dopamine cells.

OTX2 GLI1 FOXP1

1.64e-053057325804738
Pubmed

Human transcription factor protein interaction networks.

ARID1B ATXN2 PEG10 SVIL GATA2 FOXP1 CHD7 EP300 ZNF687 KIF7 ZNF503

1.76e-051429571135140242
Pubmed

Twist function is required for the morphogenesis of the cephalic neural tube and the differentiation of the cranial neural crest cells in the mouse embryo.

ALX3 OTX2 GLI1

2.41e-053457312086465
Pubmed

Hematopoietic stem and progenitor cells as novel prognostic biomarkers of longevity in a murine model for amyotrophic lateral sclerosis.

CEBPA GATA2

2.63e-05557227681176
Pubmed

T-cell factor 4N (TCF-4N), a novel isoform of mouse TCF-4, synergizes with beta-catenin to coactivate C/EBPalpha and steroidogenic factor 1 transcription factors.

CEBPA EP300

2.63e-05557212861022
Pubmed

Cell-autonomous FGF signaling regulates anteroposterior patterning and neuronal differentiation in the mesodiencephalic dopaminergic progenitor domain.

OTX2 GATA2 FOXP1

2.87e-053657322278924
Pubmed

Quantitative trait loci affecting the 3D skull shape and size in mouse and prioritization of candidate genes in-silico.

ALX3 CHD7 KIF7

3.66e-053957325859222
Pubmed

ARID1B maintains mesenchymal stem cell quiescence via inhibition of BCL11B-mediated non-canonical Activin signaling.

ARID1B GLI1

3.94e-05657238816354
Pubmed

Coordinated hedgehog signaling induces new hair follicles in adult skin.

GLI1 SDC1

3.94e-05657232178760
Pubmed

Characteristic overexpression of the forkhead box transcription factor Foxf1 in Patched-associated tumors.

GLI1 NOTCH2

3.94e-05657219020777
Pubmed

Cloning of the gene for spinocerebellar ataxia 2 reveals a locus with high sensitivity to expanded CAG/glutamine repeats.

ARID1B ATXN2

3.94e-0565728896557
Pubmed

Reactivation of codogenic endogenous retroviral (ERV) envelope genes in human endometrial carcinoma and prestages: Emergence of new molecular targets.

ERVV-2 ERVV-1

3.94e-05657223085571
Pubmed

Individual retinal progenitor cells display extensive heterogeneity of gene expression.

RHBDL3 FOXP1 TCF7L1

4.26e-054157318270576
Pubmed

The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis.

ARID1B OTX2 PEG10 CHD7 SIPA1L2 TCF7L1

4.66e-0539657626687479
Pubmed

Developmental waves of mechanosensitivity acquisition in sensory neuron subtypes during embryonic development.

NTRK1 PKD1L1 SCNN1A

5.27e-054457319322198
Pubmed

The Wnt/beta-catenin pathway regulates Gli-mediated Myf5 expression during somitogenesis.

GLI1 TCF7L1

5.51e-05757216936075
Pubmed

Essential function of oncostatin m in nociceptive neurons of dorsal root ganglia.

NTRK1 OSMR

5.51e-05757214985435
Pubmed

Deregulated FGF and homeotic gene expression underlies cerebellar vermis hypoplasia in CHARGE syndrome.

OTX2 CHD7

5.51e-05757224368733
Pubmed

Dlx1&2 and Mash1 transcription factors control MGE and CGE patterning and differentiation through parallel and overlapping pathways.

OTX2 GLI1 FOXP1 ZNF503

6.31e-0513057419386638
Pubmed

Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs.

ABCA2 BICRAL THSD7B BAHCC1

6.31e-0513057412421765
Pubmed

Dlx1&2 and Mash1 transcription factors control striatal patterning and differentiation through parallel and overlapping pathways.

OTX2 GLI1 FOXP1 ZNF503

7.10e-0513457419030180
Pubmed

PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα.

ARID1B CEBPA ATXN2 FOXP1 BICRAL CHD7 EP300 ZNF687 ZNF503

7.19e-05110357934189442
Pubmed

A dual-activity topoisomerase complex regulates mRNA translation and turnover.

ABCA2 GLI1 GATA2 SIPA1L2 EP300 NOTCH2 ZNF687 ZNF503 BAHCC1

7.29e-05110557935748872
Pubmed

A ciliopathy complex builds distal appendages to initiate ciliogenesis.

GLI1 KIAA0753

7.34e-05857234241634
Pubmed

Syncytins expressed in human placental trophoblast.

ERVV-2 ERVV-1

7.34e-05857233504453
Pubmed

CHD7 and SOX2 act in a common gene regulatory network during mammalian semicircular canal and cochlear development.

OTX2 CHD7

7.34e-05857238408234
Pubmed

TNF-α inhibits glucocorticoid receptor-induced gene expression by reshaping the GR nuclear cofactor profile.

ARID1B SLC22A16 CHD7 CSMD2 EP300 ZNF687 KIF7

8.08e-0563857731182584
Pubmed

An atlas of combinatorial transcriptional regulation in mouse and man.

ALX3 ELOA OTX2 CEBPA GLI1 GATA2 FOXP1 EP300

8.77e-0587757820211142
Pubmed

Kif7 promotes hedgehog signaling in growth plate chondrocytes by restricting the inhibitory function of Sufu.

GLI1 KIF7

9.43e-05957221795282
Pubmed

Opposing gradients of Gli repressor and activators mediate Shh signaling along the dorsoventral axis of the inner ear.

OTX2 GLI1

9.43e-05957217395647
Pubmed

Reproductive dysfunction and decreased GnRH neurogenesis in a mouse model of CHARGE syndrome.

OTX2 CHD7

9.43e-05957221596839
Pubmed

Nolz1 expression is required in dopaminergic axon guidance and striatal innervation.

OTX2 FOXP1 ZNF503

1.03e-045557332561725
Pubmed

Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia.

OTX2 GLI1 NTRK1

1.15e-045757335377797
Pubmed

The kinesin protein Kif7 is a critical regulator of Gli transcription factors in mammalian hedgehog signaling.

GLI1 KIF7

1.18e-041057219549984
Pubmed

Tectal-derived interneurons contribute to phasic and tonic inhibition in the visual thalamus.

OTX2 GATA2

1.18e-041057227929058
Pubmed

GCN5 and p300 share essential functions during early embryogenesis.

OTX2 EP300

1.18e-041057215937931
Pubmed

Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro.

FBXO42 CHD7 SIPA1L2 ZNF687

1.19e-0415357410718198
Pubmed

Pleiotropic role for MYCN in medulloblastoma.

OTX2 GLI1

1.44e-041157220478998
Pubmed

mTORC1 activity is essential for erythropoiesis and B cell lineage commitment.

CEBPA GATA2

1.44e-041157231729420
Pubmed

Duration of Shh signaling contributes to mDA neuron diversity.

OTX2 GLI1

1.44e-041157223201023
Pubmed

Zfp503/Nlz2 Is Required for RPE Differentiation and Optic Fissure Closure.

OTX2 ZNF503

1.44e-041157236326727
Pubmed

The chromatin remodeling factor CHD7 controls cerebellar development by regulating reelin expression.

OTX2 CHD7

1.44e-041157228165338
Pubmed

The onecut transcription factor hepatocyte nuclear factor-6 controls B lymphopoiesis in fetal liver.

OSMR F12

1.72e-041257212874218
Pubmed

The ATP-dependent chromatin remodeling enzyme CHD7 regulates pro-neural gene expression and neurogenesis in the inner ear.

OTX2 CHD7

1.72e-041257220736290
Pubmed

AP-2alpha knockout mice exhibit optic cup patterning defects and failure of optic stalk morphogenesis.

OTX2 GLI1

1.72e-041257220150232
Pubmed

Cell type-selective expression of the zinc finger-containing gene Nolz-1/Zfp503 in the developing mouse striatum.

FOXP1 ZNF503

1.72e-041257223684982
Pubmed

Sox6 and Otx2 control the specification of substantia nigra and ventral tegmental area dopamine neurons.

OTX2 ZNF503

2.03e-041357225127144
Pubmed

The mammalian Cos2 homolog Kif7 plays an essential role in modulating Hh signal transduction during development.

GLI1 KIF7

2.03e-041357219592253
Pubmed

Sufu and Kif7 in limb patterning and development.

GLI1 KIF7

2.37e-041457225581370
Pubmed

Niche-mediated repair of airways is directed in an occupant-dependent manner.

PIEZO2 GLI1

2.37e-041457236543133
Pubmed

Dose-Dependent and Subset-Specific Regulation of Midbrain Dopaminergic Neuron Differentiation by LEF1-Mediated WNT1/b-Catenin Signaling.

OTX2 TCF7L1

2.37e-041457233195246
Pubmed

Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette.

SVIL FOXP1 CHD7 SEC31A KIF24 NOTCH2

2.43e-0453657615840001
Pubmed

Exchangeable gene trap using the Cre/mutated lox system.

SVIL FOXP1 CHD7 SEC31A KIF24 NOTCH2

2.48e-0453857610512203
Pubmed

KIF7 Controls the Proliferation of Cells of the Respiratory Airway through Distinct Microtubule Dependent Mechanisms.

GLI1 KIF7

2.73e-041557226439735
Pubmed

Arx Expression Suppresses Ventralization of the Developing Dorsal Forebrain.

OTX2 GLI1

2.73e-041557230659230
Pubmed

Mapping lineage progression of somatic progenitor cells in the mouse fetal testis.

GLI1 NOTCH2

2.73e-041557227621062
Pubmed

Jarid2 promotes temporal progression of retinal progenitors via repression of Foxp1.

OTX2 FOXP1

2.73e-041557236924502
Pubmed

Intraflagellar transport protein 172 is essential for primary cilia formation and plays a vital role in patterning the mammalian brain.

OTX2 GLI1

2.73e-041557218930042
Pubmed

Tcf7l1 prepares epiblast cells in the gastrulating mouse embryo for lineage specification.

OTX2 TCF7L1

2.73e-041557223487311
Pubmed

The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo.

OTX2 CEBPA GLI1 GATA2

2.77e-0419157424146773
Pubmed

Kif7 regulates Gli2 through Sufu-dependent and -independent functions during skin development and tumorigenesis.

GLI1 KIF7

3.12e-041657223034632
Pubmed

Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules.

CEBPA EP300

3.12e-041657222780989
Pubmed

Identification and characterization of VPO1, a new animal heme-containing peroxidase.

OTX2 GLI1

3.12e-041657218929642
Pubmed

Distinct developmental origins and regulatory mechanisms for GABAergic neurons associated with dopaminergic nuclei in the ventral mesodiencephalic region.

OTX2 GATA2

3.12e-041657222627282
Pubmed

Protein interaction screening for the ankyrin repeats and suppressor of cytokine signaling (SOCS) box (ASB) family identify Asb11 as a novel endoplasmic reticulum resident ubiquitin ligase.

SVIL CPD ZC3H6 NOTCH2

3.18e-0419857424337577
Pubmed

Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst.

OTX2 CEBPA GATA2 FOXP1 ZC3H6 TCF7L1 ZNF687

3.43e-0480857720412781
Pubmed

Identification of the SOX2 Interactome by BioID Reveals EP300 as a Mediator of SOX2-dependent Squamous Differentiation and Lung Squamous Cell Carcinoma Growth.

ARID1B CHD7 EP300

3.49e-048357328794006
Pubmed

Six1 controls patterning of the mouse otic vesicle.

OTX2 GLI1

3.53e-041757214695375
Pubmed

Proper ciliary assembly is critical for restricting Hedgehog signaling during early eye development in mice.

OTX2 GLI1

3.53e-041757228778798
InteractionGATA2 interactions

ARID1B CEBPA GATA2 FOXP1 CHD7 EP300 ZNF503

1.12e-06199557int:GATA2
InteractionSOX7 interactions

ARID1B FOXP1 CHD7 EP300 BAHCC1

2.92e-0682555int:SOX7
InteractionIRF4 interactions

ARID1B PEG10 FOXP1 CHD7 EP300

3.49e-0685555int:IRF4
InteractionGSC interactions

ARID1B FOXP1 EP300 ZNF503 BAHCC1

3.92e-0687555int:GSC
InteractionLHX2 interactions

ARID1B FLYWCH1 FOXP1 CHD7 OSMR ZNF687

1.03e-05183556int:LHX2
InteractionGATA3 interactions

ARID1B PEG10 GATA2 CHD7 EP300 ZNF503

1.17e-05187556int:GATA3
InteractionACTL6A interactions

ARID1B CEBPA NTRK1 GATA2 BICRAL EP300 KIF7

1.31e-05289557int:ACTL6A
InteractionZNF503 interactions

ARID1B CEBPA GATA2 ZNF503

1.76e-0557554int:ZNF503
InteractionPAX7 interactions

ARID1B FOXP1 CHD7 EP300 ZNF503

2.21e-05124555int:PAX7
InteractionPAX9 interactions

ARID1B FOXP1 CHD7 EP300 ZNF503

2.78e-05130555int:PAX9
InteractionSMARCA4 interactions

ARID1B CEBPA GLI1 NTRK1 GATA2 BICRAL CHD7 EP300

3.40e-05462558int:SMARCA4
InteractionGCM1 interactions

ARID1B FOXP1 EP300 ZNF503

3.55e-0568554int:GCM1
InteractionSMARCA2 interactions

ARID1B CEBPA GATA2 FOXP1 BICRAL OSMR EP300

4.14e-05346557int:SMARCA2
InteractionSMARCC2 interactions

ARID1B CEBPA GLI1 NTRK1 GATA2 CHD7 EP300

4.70e-05353557int:SMARCC2
InteractionARID2 interactions

ARID1B CEBPA FBXO42 GATA2 CHD7

6.05e-05153555int:ARID2
InteractionDCAF7 interactions

CEBPA ATXN2 SVIL GATA2 SEC31A EP300 ZNF503

6.11e-05368557int:DCAF7
InteractionCRX interactions

ARID1B OTX2 FOXP1 CHD7 EP300 BAHCC1

6.53e-05254556int:CRX
InteractionFOXP1 interactions

CEBPA SLC22A16 GATA2 FOXP1 HYDIN ZNF687

6.82e-05256556int:FOXP1
InteractionZBTB39 interactions

CEBPA FOXP1 NOTCH2

9.90e-0533553int:ZBTB39
InteractionEGR2 interactions

ARID1B FOXP1 CHD7 EP300 BAHCC1

1.02e-04171555int:EGR2
InteractionARID1A interactions

ARID1B CEBPA FBXO42 GATA2 CHD7 EP300

1.03e-04276556int:ARID1A
InteractionTLX1 interactions

ARID1B FOXP1 CHD7 EP300 ZNF503

1.14e-04175555int:TLX1
InteractionSOX10 interactions

ARID1B CEBPA CHD7 EP300

1.16e-0492554int:SOX10
InteractionFOXI1 interactions

ARID1B FOXP1 EP300 ZNF503

1.16e-0492554int:FOXI1
InteractionPATL1 interactions

NTRK1 SIPA1L2 EP300 KIF7 KIAA0753

1.20e-04177555int:PATL1
InteractionSMARCE1 interactions

ARID1B CEBPA GLI1 GATA2 CHD7 EP300

1.28e-04287556int:SMARCE1
InteractionTLX3 interactions

ARID1B OTX2 FOXP1 CHD7 EP300 ZNF503

1.38e-04291556int:TLX3
InteractionHNF1B interactions

ARID1B OTX2 FOXP1 CHD7 EP300

1.68e-04190555int:HNF1B
InteractionTSG101 interactions

ATXN2 PEG10 NTRK1 SCNN1A CHD7 EP300

1.72e-04303556int:TSG101
InteractionTBL1XR1 interactions

CEBPA NTRK1 GATA2 SEC31A EP300

1.76e-04192555int:TBL1XR1
InteractionJDP2 interactions

ALX3 CEBPA EP300

2.05e-0442553int:JDP2
InteractionFEV interactions

ARID1B FOXP1 CHD7 EP300 ZNF503

2.28e-04203555int:FEV
InteractionPAX8 interactions

ARID1B FOXP1 CHD7 EP300

2.39e-04111554int:PAX8
InteractionTBR1 interactions

ARID1B CHD7 EP300 ZNF503

2.56e-04113554int:TBR1
InteractionNFIC interactions

ELOA ARID1B CEBPA GATA2 FOXP1

2.67e-04210555int:NFIC
InteractionNR3C1 interactions

ARID1B CEBPA SLC22A16 FBXO42 SVIL CHD7 CSMD2 EP300 ZNF687 KIF7

2.67e-049745510int:NR3C1
InteractionZNF316 interactions

CEBPA NTRK1 NOTCH2

2.69e-0446553int:ZNF316
InteractionZNF687 interactions

CEBPA FOXP1 NOTCH2 ZNF687

2.74e-04115554int:ZNF687
InteractionTBXT interactions

ARID1B FOXP1 CHD7 EP300

2.83e-04116554int:TBXT
InteractionPLRG1 interactions

LINS1 CEBPA GLI1 NTRK1 EP300

3.04e-04216555int:PLRG1
InteractionNANOG interactions

ARID1B OTX2 PEG10 CHD7 SIPA1L2 TCF7L1 EP300

3.18e-04481557int:NANOG
InteractionRTRAF interactions

OTX2 CEBPA ATXN2 NTRK1 EP300

3.45e-04222555int:RTRAF
InteractionSMARCD1 interactions

ARID1B CEBPA NTRK1 GATA2 BICRAL KIAA0753

3.66e-04349556int:SMARCD1
InteractionPTPN22 interactions

CEBPA KIF7 KIAA0753

3.87e-0452553int:PTPN22
ToppCell368C-Epithelial_cells-Epithelial-G_(Club-Clara_cells)|368C / Donor, Lineage, Cell class and subclass (all cells)

PEG10 SIMC1 SCNN1A SDC1 ZNF687

4.13e-06187575b827d9da7032bf051756ddf88352af922eb0f87b
ToppCell368C-Epithelial_cells-Epithelial-G_(Club-Clara_cells)-|368C / Donor, Lineage, Cell class and subclass (all cells)

PEG10 SIMC1 SCNN1A SDC1 ZNF687

4.13e-0618757561c00604dda8b36a5c3eea6554e5601aa1b884f7
ToppCellCOPD-Endothelial-VE_Capillary_B|Endothelial / Disease state, Lineage and Cell class

GATA2 CPD RIMS1 OSMR SIPA1L2

5.32e-0619757530dbc05ea66892d2e18ff375ffa86d1db7bc4083
ToppCellControl-B_naive-8|World / disease group and sub_cluster of B and Plasma cells(res = 0.5)

ARID1B PEG10 SIMC1 FOXP1 BAHCC1

5.32e-06197575925bf0d38e4ce279fa45f455546ebd199282c0df
ToppCellrenal_medulla_nuclei-Hypertensive_with+without-CKD-Epithelial-Collecting_tubule_epithelial_cell-kidney_connecting_tubule_epithelial_cell_cycling-Cycling_Connecting_Tubule_Cell_S-high|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group

ALX3 RHBDL3 RIMS1 KIF24

3.03e-05139574c9bf98bed77415a1438f3f9e441a1346e75c26b0
ToppCell356C-Fibroblasts-Fibroblast-G-|Fibroblasts / Donor, Lineage, Cell class and subclass (all cells)

LINS1 PIEZO2 SCNN1A IBA57-DT

5.25e-051605740293b244c063a62819690bf22bbc2681f8d15252
ToppCell356C-Fibroblasts-Fibroblast-G|Fibroblasts / Donor, Lineage, Cell class and subclass (all cells)

LINS1 PIEZO2 SCNN1A IBA57-DT

5.25e-051605743eaae86fa08f7651021316f8e5811bf48055591e
ToppCellmoderate-Myeloid-Mast_cell|Myeloid / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

PIEZO2 NTRK1 GATA2 FOXP1

6.06e-05166574c3835b424c63bf11a4e2c47635dc3787fc4a637a
ToppCellprimary_auditory_cortex_(A1C)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_2-Inh_L2-6_VIP_VIP|primary_auditory_cortex_(A1C) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

POU5F2 ADAM33 CHD7 THSD7B

6.80e-05171574a5634b76476b8b2488a706bbab5141f7bd94631f
ToppCellfacs-Lung-Endomucin_-18m-Myeloid-non-classical_monocyte|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

POU5F2 SVIL SCNN1A EP300

7.11e-05173574c31076c725f4cd912c56903592a2d9356ae59f54
ToppCellfacs-Lung-Endomucin_-18m-Myeloid-Nonclassical_Monocyte|Lung / Lung_Trachea - method, tissue, subtissue, age, lineage, cell ontology and free annotation

POU5F2 SVIL SCNN1A EP300

7.11e-05173574a4ed191cfdf6588b7f3672995bf0a4fe9e4b8df6
ToppCellfacs-Heart-RV-24m-Mesenchymal-smooth_muscle_cell|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SEMA5B SIPA1L2 DMPK SDC1

8.29e-05180574a37cc885fe3f6cb9df69d43358064c83c18412e7
ToppCellfacs-Heart-RV-24m-Mesenchymal-smooth_muscle_cell|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SEMA5B SIPA1L2 DMPK SDC1

8.29e-0518057463a6d532b16b8b15c7c9102148d7297ee3afd641
ToppCellfacs-Large_Intestine-Distal-24m-Epithelial-nan|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

PIEZO2 SCNN1A FOXP1 TCF7L1

8.47e-0518157475340f0c06977c88f9d2e56265f4aa84d706d2c6
ToppCellfacs-Liver-Hepatocytes-24m|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

CEBPA SDC1 F12 OPLAH

8.84e-05183574d0721c6aa426953a520d40e976b6e65aa7ca65e8
ToppCelldroplet-Lung-1m-Mesenchymal-fibroblast-alveolar_fibroblast-alveolar_fibroblast_l1|1m / method, tissue, age, lineage, sublineage, cell ontologies, cell type and subtype

GLI1 OSMR DMPK KIF7

9.03e-05184574e33e2a887aafba7b6a31f00bb0dbe974b4359fd6
ToppCellAnterior_Cingulate_gyrus_(CgG)-Neuronal-Inh_GABAergic-i_Gaba_2-GABA_VIP_1-Inh_L1_ADARB2_ADAM33|Anterior_Cingulate_gyrus_(CgG) / Sample groups (6 Anatomical region groups), with 5 level hierarchy of cell types

NPIPB11 ADAM33 THSD7B SIPA1L2

9.22e-05185574487fa382232564f075960899d50afa0edae5d258
ToppCellControl-Epithelial-Club|World / Disease state, Lineage and Cell class

PEG10 SCNN1A OSMR SDC1

9.41e-051865749798428691408e17ff2af2fe2d1b345f074d67e4
ToppCellILEUM-inflamed-(8)_Fibroblast-(8)_Smooth_muscle_cells|(8)_Fibroblast / shred on tissue, inflammation_status, cell class(v3), cell subclass (v2)

GLI1 ERVV-1 RIMS1 HYDIN

9.41e-05186574cacc2f0b2ed46516173b61ba1c5c226a2db7cddc
ToppCellkidney_cells-Hypertensive_with+without-CKD-Epithelial-Collecting_tubule_epithelial_cell-kidney_collecting_duct_intercalated_cell-Intercalated_Cell_Type_B|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group

NTRK1 GATA2 SCNN1A ZNF503

1.00e-041895741fd763c4e9904e866586a506ee7b0b285170481d
ToppCellIPF-Epithelial-Club|IPF / Disease state, Lineage and Cell class

SCNN1A RIMS1 OSMR SDC1

1.00e-04189574f3fcef008ef252b29ac6d567fef27f9acf9cd70f
ToppCellIPF-Epithelial-Club|World / Disease state, Lineage and Cell class

SCNN1A RIMS1 OSMR SDC1

1.04e-041915743c88a6f1d74bb3b9173cd0ea3a63c6d9570e3954
ToppCellControl-Epithelial-Club|Control / Disease state, Lineage and Cell class

PEG10 SCNN1A OSMR SDC1

1.06e-04192574d84ed1ea4a03edaa18c804f75afb03bd7b1f0e16
ToppCellEndothelial-A|World / shred on cell class and cell subclass (v4)

PIEZO2 GATA2 FOXP1 ZNF503

1.06e-041925749919cdc0ce833894525dba429f251ea1b094fbd8
ToppCell5'-GW_trimst-2-LargeIntestine-Mesenchymal-myocytic|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

SVIL RIMS1 DMPK ZNF503

1.06e-04192574d0fb6885f023d55a2b7984c99db9c6463258f788
ToppCellPND03-Endothelial-Endothelial_blood-vessel-Microvascular_EC-CAP1|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

PIEZO2 GATA2 FOXP1 ZNF503

1.11e-0419457444c7d4b75f3b7c9301eba20610e548a01a84ae40
ToppCellPND03-Endothelial-Endothelial_blood-vessel-Microvascular_EC-CAP1-CAP1_mature|PND03 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

PIEZO2 GATA2 FOXP1 ZNF503

1.11e-041945747f24023df47935286f185dd428d48797daf26f49
ToppCellControl-B_naive-8|Control / disease group and sub_cluster of B and Plasma cells(res = 0.5)

ARID1B PEG10 FOXP1 BAHCC1

1.15e-0419657454074da84000e4749ade8acc542f05a275bf829f
ToppCellcritical-Epithelial-Secretory|Epithelial / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

SCNN1A CPD RIMS1 SEC31A

1.15e-04196574dbf14f5851c2b779a8b35e820c4584ea9096e49d
ToppCell5'-GW_trimst-2-LargeIntestine-Mesenchymal-fibroblastic-Stromal_3_(C7+)|GW_trimst-2 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

PIEZO2 PEG10 SVIL ZNF503

1.17e-041975742744cc94883c5d0424677cf5093bbab622933e9b
ToppCell3'-GW_trimst-1-LargeIntestine-Mesenchymal-fibroblastic|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

PIEZO2 SEMA5B PEG10 SVIL

1.17e-041975746668f0da54f3bf96769275e668cd57e00b8a5ef9
ToppCell3'-GW_trimst-1-LargeIntestine-Mesenchymal-fibroblastic-Stromal_3_(C7+)|GW_trimst-1 / Celltypes from developing, pediatric, Crohn's, & adult GI tract

PIEZO2 SEMA5B PEG10 SVIL

1.17e-041975747c275a2ac24a9a4f83fceda93a067e754837102f
ToppCelldistal-3-mesenchymal-Fibromyocyte|3 / Location, Lineage, Cell class (ontology) and Donor from 10X sequencing (macrophage renamed)

GLI1 ADAM33 THSD7B CSMD2

1.20e-04198574dc93886439a378a0c71e99acb8081bfb6b6d467b
ToppCellBAL-Severe-Epithelial-Epithelial-AT1/AT2-|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

PEG10 SCNN1A OSMR SDC1

1.20e-04198574691a2f1779225e5519155460eeb6a2aac5f67a92
ToppCellmoderate-Epithelial-Secretory|Epithelial / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

SCNN1A CPD SEC31A SDC1

1.20e-041985747ecce5e266bb08797088cc8f8309e0c7b48df5c9
ToppCellCOVID-19-Epithelial-AT2,_AT1_cells|COVID-19 / Condition, Lineage and Cell class

PEG10 SCNN1A OSMR SDC1

1.20e-041985747e6f089e71e70190ff8486341ab06719d7741467
ToppCelldistal-mesenchymal-Fibromyocyte-3|distal / Location, Lineage, Cell class (ontology) and Donor from 10X sequencing (macrophage renamed)

GLI1 ADAM33 THSD7B CSMD2

1.20e-041985749d1d95e7703cfc70a8ad427e400c340dbd205db8
ToppCellBAL-Severe-Epithelial-Epithelial-AT1/AT2|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

PEG10 SCNN1A OSMR SDC1

1.20e-04198574aed0476248e9637897eefb1623ec4035f2dacd82
ToppCellBAL-Severe-Epithelial-Epithelial-AT1/AT2|Severe / Location, Disease Group, Cell group, Cell class (2021.03.09)

PEG10 SCNN1A OSMR SDC1

1.20e-04198574e115eea04012e9e492e923ed080e1723c38d14fd
ToppCellBAL-Severe-Epithelial-Epithelial-AT1/AT2-|Severe / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)

PEG10 SCNN1A OSMR SDC1

1.20e-0419857433d1e0b6f57663544bee0ffdde83a65da764d44c
ToppCellSevere_COVID-19-Epithelial-AT1/AT2|Severe_COVID-19 / Disease group,lineage and cell class (2021.01.30)

PEG10 SCNN1A OSMR SDC1

1.20e-0419857443e33d28d9de5033bd00d39be953542a225236ed
ToppCelldistal-mesenchymal-Fibromyocyte|distal / Location, Lineage, Cell class (ontology) and Donor from 10X sequencing (macrophage renamed)

GLI1 ADAM33 THSD7B CSMD2

1.20e-04198574fbfac1d10e4224990a094cc84b74bbc206881423
ToppCellNS-control-d_0-4-Epithelial-Secretory|d_0-4 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

SCNN1A CPD RIMS1 SDC1

1.22e-0419957432bdfff40fd442b88489c8b0f79af3927a51a03c
ToppCellTracheal-NucSeq-Endothelial-Endothelia_vascular-VE_pulmonary_venous|NucSeq / Cell types per location group and 10X technology with lineage, and cell group designations

ALX3 GATA2 VARS2 OSMR

1.22e-04199574079931e7196719f22a89cfad82f452ec67219ee5
ToppCellcontrol-Epithelial-Secretory|Epithelial / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

SCNN1A CPD RIMS1 SDC1

1.22e-041995743d01f90ffd271ca00129192787e4921bdca7e01e
ToppCellcontrol-Epithelial-Secretory|control / Severity, Lineage and Cell class of Nasopharyngeal (NS) Samples from Patients and Controls

SCNN1A CPD RIMS1 SDC1

1.22e-04199574262e5b8a52c8ddb0b47048c786e8bdb7158e1b9a
ToppCellBronchial-10x5prime-Immune_Myeloid-Myeloid-Megakaryocyte|10x5prime / Cell types per location group and 10X technology with lineage, and cell group designations

PIEZO2 POU5F2 NTRK1 GATA2

1.22e-041995746e7f7214317f2af2ba8523df9896f54b7294d58a
ToppCellBronchial-10x5prime-Immune_Myeloid-Myeloid|10x5prime / Cell types per location group and 10X technology with lineage, and cell group designations

PIEZO2 POU5F2 NTRK1 GATA2

1.22e-041995745f499595597c10857bba8272f62afe4d32d733ac
ToppCellBiopsy_IPF-Epithelial-SCGB3A2+|Biopsy_IPF / Sample group, Lineage and Cell type

PEG10 SCNN1A RIMS1 SDC1

1.24e-042005742aaf130d702d18c277d16b6800f006a53ed653fb
ToppCellmild-B_naive|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class

ARID1B PEG10 FOXP1 CHD7

1.24e-04200574222789b897e2a683bbfd1d00b6fd8705015d90df
ToppCellFetal_brain-organoid_Tanaka_cellReport-GW09-Macroglial|GW09 / Sample Type, Dataset, Time_group, and Cell type.

SDC1 NOTCH2 ZNF687

1.65e-04835737893ce9fbf34c6250dca9c265fe9b2d4cb889ade
ToppCellfrontal_cortex-Neuronal-glutamatergic_neuron-L6b-L6b_VISp_Col8a1_Rprm|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SEMA5B SVIL THSD7B

4.87e-041205732b7596946f9268c4202348adf3069decd8313bb0
ToppCellfrontal_cortex-Non-neuronal-leptomeningeal_cell-VLMC-VLMC_Spp1_Hs3st6|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

ALX3 NOTCH2 ZNF503

5.24e-0412357364a2d7e40d9c948a9ccaf61c465fb2207e0b7ab8
ToppCellCOVID-19_Mild-Neu_4|World / 5 Neutrophil clusters in COVID-19 patients

PKD1L1 CSMD2 TCF7L1

5.36e-041245735ef9eb806fb2c8ee5aae0a75503d244b08ee10d4
ToppCellfrontal_cortex-Neuronal-GABAergic_neuron-Vip-Vip_Igfbp6_Pltp|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SVIL CHD7 THSD7B

5.36e-0412457336dfc702a570e1a1a6dde09f38badf9023ea7287
ToppCellPBMC-Mild-Myeloid-Neutrophil-immature_Neutrophil-Neu_4|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.01)

PKD1L1 CSMD2 TCF7L1

5.62e-0412657369b2525b92d1c7c35b21cc701f5fa52a9c1b94bb
ToppCellPBMC-Mild-Myeloid-Neutrophil-immature_Neutrophil-Neu_4|Mild / Location, Disease Group, Cell group, Cell class and sub_cluster (2021.03.09)

PKD1L1 CSMD2 TCF7L1

5.62e-041265736cb89754010d64875e115da6c5805efac7a4a82d
ToppCellprimary_visual_cortex-Neuronal-glutamatergic_neuron-L6b-L6b_VISp_Mup5|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SEMA5B SVIL THSD7B

5.75e-041275736df92f80b8922ca00eb383f79cd8dda4d602adfc
ToppCellfrontal_cortex-Neuronal-glutamatergic_neuron-L6b-L6b_ALM_Olfr111_Spon1|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SEMA5B SVIL THSD7B

5.75e-04127573cd69ba386796715e87674f8324d2acaad1d4d094
ToppCellLPS-antiTNF-Epithelial_alveolar-Mes-Like-Differentiating_AT1|LPS-antiTNF / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2

ABCA2 SDC1 ZNF687

5.88e-041285732cf0384240a4a663869cf6b27d954236f6214a9a
ToppCellprimary_visual_cortex-Neuronal-glutamatergic_neuron-L6b-L6b_VISp_Col8a1_Rxfp1|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SEMA5B SVIL THSD7B

6.29e-0413157381efe8b0ca4377e557a42ddb12aecaf3f46b15bf
ToppCellprimary_visual_cortex-Neuronal-glutamatergic_neuron-L6b-L6b_P2ry12|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SVIL ADAM33 SDC1

6.29e-0413157380630812f8894b9358d36dc2dd03fea7ee870502
ToppCellPBMC_fresh-frozen-Severe-critical_progression_d12-22-Lymphocytic-Lymphocytic_T-CD8-positive,_alpha-beta_T_cell-T_CD8_c06-TNF|Severe-critical_progression_d12-22 / Compartment, severity and other cell annotations on 10x 3' data (130k)

CEBPA CDKL3 TCF7L1

7.63e-04140573276b3fa924176426efb31112ed4d355407f0b218
ToppCellfrontal_cortex-Neuronal-glutamatergic_neuron-L6b|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SEMA5B SVIL SDC1

7.63e-0414057317005ca714ba03d7528fe7979ffb4654a46b666c
ToppCellprimary_visual_cortex-Neuronal-glutamatergic_neuron-L6b|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SEMA5B SVIL THSD7B

7.79e-041415735ef3166c5271aa90fd0633016edfe2c74b835319
ToppCellSevere-B_naive-8|World / disease group and sub_cluster of B and Plasma cells(res = 0.5)

PEG10 FOXP1 BAHCC1

8.45e-04145573a24cad86509208bc7267b02ef1d1b0a25a2a7043
ToppCellfrontal_cortex-Neuronal-GABAergic_neuron-Vip-Vip_Lmo1_Myl1|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SEMA5B SVIL LINGO4

8.45e-04145573590ba937c741ae67460f303eca88b1cd3ac87f64
ToppCellIIH-CD8-proli_CD4|IIH / Condition, Cell_class and T cell subcluster

ABCA2 NPIPB11 DMPK

8.61e-041465737fa6e35def3f7cffbee1e1c2f10b523bab678e14
ToppCellP15-Epithelial-epithelial_progenitor_cell-epithelial_progenitor_cell|P15 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase

CEBPA SCNN1A SDC1

8.79e-04147573aba44c7057096483c4293a7ebcf8ccc8baed0231
ToppCellfrontal_cortex-Neuronal-GABAergic_neuron-Vip-Vip_Lmo1_Fam159b|frontal_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

OTX2 SEMA5B SVIL

8.96e-041485739205b26e0d042b342cc643cda0f4f3f8bb392d00
ToppCellTCGA-Brain-Primary_Tumor-Low_Grade_Glioma-Astrocytoma-3|TCGA-Brain / Sample_Type by Project: Shred V9

ELOA CSMD2 TCF7L1

9.14e-04149573768877bade04ca0321593b8470b5011ad8270431
ToppCellE18.5-samps-Mesenchymal-Pericyte-pericyte_B|E18.5-samps / Age Group, Lineage, Cell class and subclass

PEG10 BICRAL SIPA1L2

9.49e-041515738ba15ab24fe2e71df0a2a7511ca451ad2376bd91
ToppCellP03-Epithelial-epithelial_progenitor_cell-epi_progenitor|P03 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase

ABCA2 CEBPA SDC1

9.49e-04151573fce04bce66411c21cd5d4d41375f26f1f50f3348
ToppCellrenal_cortex_nuclei-CKD+DKD_normotensive-Epithelial-Collecting_tubule_epithelial_cell-kidney_collecting_duct_intercalated_cell-Intercalated_Cell_Type_B|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

NTRK1 FOXP1 SIPA1L2

9.68e-04152573655d47efe0608d729801f1f01668e84c1bc0675f
ToppCellP15-Epithelial-epithelial_progenitor_cell|P15 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase

CEBPA SCNN1A SDC1

9.68e-0415257300d5503d462cfa009fb4cac79ecee11725a18b9a
ToppCellprimary_visual_cortex-Neuronal-GABAergic_neuron-Vip-Vip_Rspo1_Itga4|primary_visual_cortex / Per Region, Lineage, Cell class, Cell type, Cell subtype

SEMA5B PEG10 SVIL

1.02e-03155573cba6f3f7742b4d5d54ad0a0ac0dd4016e73fe658
ToppCellfacs-BAT-Fat-24m-Lymphocytic-NK_cell|BAT / Fat_BAT_GAT_MAT_SCAT - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SIMC1 ZNF687 OPLAH

1.02e-03155573550e7e7e52829244ead829e5be010bfdc71e2ba5
ToppCell10x_3'_v2v3-Non-neoplastic-Glial-Neuronal-OPC-OPC-E|10x_3'_v2v3 / Platform, Oncotype, Lineage, Cell_class, celltype (level4), mutation group

SEMA5B RHBDL3 CSMD2

1.02e-0315557377fdae85d36efb776db977eb424b32487ef222e4
ToppCellfacs-Liver-Non-hepatocytes-3m-Endothelial-nan|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

CPD OSMR HYDIN

1.02e-031555738fdda4e3657ac56188ae88ed3caf145f4d9d1567
ToppCellNS-moderate-d_07-13-Myeloid-Mast_cell|d_07-13 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

NTRK1 GATA2 FOXP1

1.04e-0315657317c38d3b03fc38cb125cf0d165b2fd694cd88edd
ToppCellfacs-Marrow-B-cells-18m-Myeloid-granulocyte|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

NTRK1 SVIL F12

1.06e-031575730673c7161c25feceee8f1e5fd237171576c42c6b
ToppCellfacs-Marrow-B-cells-18m-Myeloid-granulocyte|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

NTRK1 SVIL F12

1.06e-03157573d307d0b48af35e0e1af41ecd3ebf91be8fd29dc0
ToppCell10x5'-bone_marrow-Lymphocytic_B-GC_B_(I)|bone_marrow / Manually curated celltypes from each tissue

PEG10 OSMR KIF24

1.06e-03157573d4da4057917dda066da0f2aac2621fdaf1fb943b
ToppCellAdult-Mesenchymal-vascular_smooth_muscle_cell-D231|Adult / Lineage, Cell type, age group and donor

SEMA5B ADAM33 DMPK

1.08e-031585738d64c0c9de910a3f4658778642d183c8b9b6f6a2
ToppCellE18.5-samps-Mesenchymal-Matrix_fibroblast-FB-1|E18.5-samps / Age Group, Lineage, Cell class and subclass

GLI1 NOTCH2 ZNF687

1.10e-03159573b4bc888e978b1b577721b891b0af6ba9a1607044
ToppCellCOVID-19-kidney-Technical/muscle_(Mes)|kidney / Disease (COVID-19 only), tissue and cell type

RIMS1 THSD7B CSMD2

1.10e-031595735335cbcdeaf2bbd0268bbfe0e45c8c0d288e640d
ToppCellPND07-Immune-Immune_Lymphocytic_T/NK-Lymphocytic_ILC-NK-ILC-ILC_prolif|PND07 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

ABCA2 CSMD2 KIF24

1.10e-03159573f7bccfeffa737f151417bf52ea45111b0957bce9
ToppCellP15-Epithelial-epithelial_progenitor_cell-epi_progenitor|P15 / developmental_time, Lineage, Cell group, Cell type, Cell type_cellcyc-phase

CEBPA SCNN1A SDC1

1.10e-03159573a4bfd59c53237964fc24a24de5c1925fdd01db99
ToppCellFetal_29-31_weeks-Epithelial-club_cell-D062|Fetal_29-31_weeks / Lineage, Cell type, age group and donor

SCNN1A RIMS1 SDC1

1.16e-031625735c9bc3c3857a99d8a3caf359a7eb279ce9cc1c81
ToppCellfacs-Liver-Non-hepatocytes-24m-Myeloid-neutrophil|Liver / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

SVIL SIPA1L2 NOTCH2

1.18e-03163573abec4389cd88252449f110fe95416d67424b403a
ToppCellFetal_29-31_weeks-Immune-mast_cell|Fetal_29-31_weeks / Lineage, Cell type, age group and donor

NTRK1 GATA2 LINGO4

1.18e-0316357303b2ec226adffba3ce893f3d12e549c841e662fd
ToppCellNS-moderate-d_16-33-Myeloid-Mast_cell|d_16-33 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

NTRK1 GATA2 FOXP1

1.20e-0316457335c673380f75cb4bfe080089bc723c4373bcc7a5
ToppCellrenal_cortex_nuclei-Hypertensive_with+without-CKD-Mesenchymal-glomerular_mesenchymal_cell-Mesangial_Cell-mesangial_typical|Hypertensive_with+without-CKD / Celltypes from Cells and Nuclei per compartment and clinical group

PIEZO2 SEMA5B KIF7

1.20e-03164573b6df1e67a5ce5f2d86f4e1420f4ee931f760bf4d
ToppCell10x5'v1-week_12-13-Hematopoietic-HSC/MPP_and_pro-MEP|week_12-13 / cell types per 3 fetal stages;per 3',per 5'

NTRK1 GATA2 IBA57-DT

1.20e-0316457347355439e578d1b1a387fb4ee761162028abea4a
ToppCelllymphoid-B_cell-pro-B|lymphoid / Lineage, cell class and subclass

PIEZO2 SLC22A16 BAHCC1

1.23e-031655738126c2f7810fc6e09b18783aadf6434ae12b0514
ToppCell356C-Fibroblasts-Fibroblast-D|356C / Donor, Lineage, Cell class and subclass (all cells)

PIEZO2 GLI1 ADAM33

1.25e-031665737286a37b2827f3747469ffd0d76cbe81116db7ee
ToppCell356C-Fibroblasts-Fibroblast-D-|356C / Donor, Lineage, Cell class and subclass (all cells)

PIEZO2 GLI1 ADAM33

1.25e-031665737c2eee0a4f45795a956acf936b85bdb35f1b1624
ToppCellNS-critical-d_0-4-Epithelial-unknown_epithelial|d_0-4 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

BICRAL RIMS1 TCF7L1

1.25e-03166573dd02bbe4af609c6348dc92417254f4740f2900a8
ToppCell3'_v3-GI_small-bowel-Lymphocytic_Invariant-Inducer-like-ILC3|GI_small-bowel / Manually curated celltypes from each tissue

SVIL ZNF503 BAHCC1

1.25e-03166573773673a5d0430640439845b264740bfbbdad0cb2
ToppCell10x5'-bone_marrow-Hematopoietic_progenitors-Progenitor_Erythro-Mega|bone_marrow / Manually curated celltypes from each tissue

PIEZO2 SEMA5B GATA2

1.25e-03166573a853005a5587d42daecdf2e23a93109919021a4f
DiseaseDiffuse Large B-Cell Lymphoma

GLI1 SEC31A EP300 NOTCH2

3.19e-0655544C0079744
DiseaseLeukemia, Myelocytic, Acute

CEBPA SVIL GATA2 EP300 NOTCH2

1.64e-05173545C0023467
DiseaseInherited acute myeloid leukemia

CEBPA GATA2

1.97e-054542C4707228
DiseaseNeoplasm of uncertain or unknown behavior of breast

ARID1B EP300 NOTCH2

5.88e-0541543C0496956
DiseaseBreast adenocarcinoma

ARID1B EP300 NOTCH2

5.88e-0541543C0858252
DiseaseOROFACIODIGITAL SYNDROME VI

KIF7 KIAA0753

6.86e-057542C2745997
Diseaseneuroblastoma (is_marker_for)

NTRK1 SCNN1A

9.14e-058542DOID:769 (is_marker_for)
Diseaseattention deficit hyperactivity disorder, substance abuse, antisocial behaviour measurement

ARID1B OTX2 ATXN2 FOXP1 BICRAL CHD7 THSD7B SIPA1L2

9.82e-05801548EFO_0003888, EFO_0007052, MONDO_0002491
Diseaseneutrophil percentage of leukocytes

CEBPA ATXN2 GATA2 FOXP1 CHD7 SEC31A TCF7L1

1.19e-04610547EFO_0007990
Diseaseneutrophil-to-lymphocyte ratio

ATXN2 FOXP1 CHD7 VARS2

3.70e-04185544EFO_0008447
DiseaseAcute myeloid leukemia

CEBPA GATA2

4.39e-0417542cv:C0023467
DiseaseLEUKEMIA, ACUTE MYELOID

CEBPA GATA2

4.39e-0417542601626
Diseaseischemia (implicated_via_orthology)

ARID1B SCNN1A

4.39e-0417542DOID:326 (implicated_via_orthology)
Diseasealcohol use disorder (implicated_via_orthology)

ARID1B RHBDL3 EP300 NOTCH2

4.52e-04195544DOID:1574 (implicated_via_orthology)
Diseasehematocrit

ARID1B CEBPA ATXN2 LINGO4 FOXP1 OSMR HYDIN BAHCC1

4.75e-041011548EFO_0004348
DiseaseNeurodevelopmental Disorders

ARID1B FOXP1 RIMS1

6.69e-0493543C1535926
Diseasetooth agenesis

FOXP1 THSD7B

7.42e-0422542EFO_0005410
Diseasecongenital diaphragmatic hernia (biomarker_via_orthology)

EP300 KIF7

8.84e-0424542DOID:3827 (biomarker_via_orthology)
DiseaseKallmann Syndrome

OTX2 CHD7

1.04e-0326542C0162809
Diseaselifestyle measurement, alcohol consumption measurement

PIEZO2 CEBPA CSMD2

1.24e-03115543EFO_0007878, EFO_0010724
DiseaseCrohn's disease

CEBPA ATXN2 FOXP1 OSMR NOTCH2

1.26e-03441545EFO_0000384
Diseaselymphocyte percentage of leukocytes

CEBPA ATXN2 GATA2 FOXP1 CHD7 TCF7L1

1.32e-03665546EFO_0007993
Diseasediastolic blood pressure, systolic blood pressure

ARID1B PIEZO2 ATXN2 SVIL TCF7L1 F12

1.37e-03670546EFO_0006335, EFO_0006336
DiseaseFamilial aplasia of the vermis

KIF7 KIAA0753

1.38e-0330542C0431399
DiseaseSquamous cell carcinoma

CEBPA EP300 NOTCH2

1.54e-03124543C0007137
Diseasemyeloid white cell count

ATXN2 NTRK1 ADAM33 FOXP1 CHD7 TCF7L1 NOTCH2

1.54e-03937547EFO_0007988
DiseaseAcute Myeloid Leukemia, M1

CEBPA SVIL GATA2

1.57e-03125543C0026998
DiseaseAcute Myeloid Leukemia (AML-M2)

CEBPA SVIL GATA2

1.57e-03125543C1879321
Diseaseclear cell renal cell carcinoma (is_marker_for)

GATA2 EP300

1.67e-0333542DOID:4467 (is_marker_for)

Protein segments in the cluster

PeptideGeneStartEntry
QPSMPGSAQCHHRPD

nan

31

A8MWP4
PIMPPGSQGSHIHCP

EP300

806

Q09472
GRGPASHMQHPGQLP

BAHCC1

906

Q9P281
LVSCGHPGSPPHSQM

CSMD2

2771

Q7Z408
HPHGSVAGFMGVPAP

ALX3

276

O95076
NPHCGGSVTMPPINL

CDKL3

421

Q8IVW4
HPLGGVHPMELGPTA

ADAM33

756

Q9BZ11
PTIHPMSFSPAGCHP

ERVV-2

146

B6SEH9
PHPSPGGQMHAGISS

ARID1B

886

Q8NFD5
GPGHLSHVPQQSPSM

CHD7

231

Q9P2D1
CGHVPVSPKAPSMLG

OSMR

871

Q99650
NCIVTTHGPPPMAGH

FBXO42

221

Q6P3S6
THGPPPMAGHSSCVI

FBXO42

226

Q6P3S6
GQRGPGTHMSEPPHN

NOTCH2

2451

Q04721
GPLAHMPNASCGVPT

NTRK1

181

P04629
CRGSVPALMPPDHHV

LINS1

316

Q8NG48
VTVMRGHCHPPDLGG

FLYWCH1

471

Q4VC44
VPQAHVQSGMVPSHP

ATXN2

1246

Q99700
PTIHPMSFSPAGCHP

ERVV-1

146

B6SEH8
GPSHPCLAGLLGPMH

IBA57-DT

51

B1ANH7
SPGRSPMQAVHPVHV

FOXP1

621

Q9H334
AHAHVLGMVPPACLP

KIF7

571

Q2M1P5
PHIEMIPGAHSIPSG

PEG10

531

Q86TG7
MAGHRPSNHFCPLPG

POU5F2

1

Q8N7G0
PFTTIHMGVPHSGPT

KIF24

1191

Q5T7B8
PHDSARGGMIPHPQS

GLI1

156

P08151
VAVGQCPLVGPGPMH

DMPK

556

Q09013
LCSMHHLVPGGSAPP

RIMS1

1226

Q86UR5
HLPSVCGGRFHPQPM

NPIPB11

666

E5RHQ5
GGQMCRPHLLHSPGL

GATA2

81

P23769
PGLATMGTQPATHHP

GATA2

231

P23769
TIAFSPQMGHLHPGC

HYDIN

3691

Q4G0P3
TGGSIVIHSPMGQPH

BICRAL

381

Q6AI39
GHVQSPPSCTSPHQM

ELOA

201

Q14241
AHCGQTTMHLQPGHP

CEBPA

211

P49715
ASNHPIMKTGEPHCP

CPD

296

O75976
CPSSVGGHPPQMRVV

ABCA2

1651

Q9BZC7
HFCPHPMSLSLSQPG

SCNN1A

616

P37088
PAPRDMACQVQPHHG

PKD1L1

1191

Q8TDX9
LDFGMSPPACAGPHH

LINGO4

376

Q6UY18
CGSYLTPMHHQLPGP

OTX2

201

P32243
VNMPSGPHCLCPQHL

F12

111

P00748
MCIPPPNVTGSLHIG

VARS2

141

Q5ST30
PIPASCSGGTHPVMA

SVIL

751

O95425
MGEHPSPGPAVAACA

RHBDL3

1

P58872
SVFMGVTPHHVCRPP

SLC22A16

41

Q86VW1
HADIGGITPGSMPPH

OPLAH

856

O14841
PCMPATILGPVHLAG

SIPA1L2

1271

Q9P2F8
QSPGGMPHLPGDVLH

SIMC1

311

Q8NDZ2
DMQPGHHETSTPAGP

SDC1

156

P18827
MGPGQPASTCVHLAP

KIAA0753

1

Q2KHM9
SQGHSSPVMHPGSPG

ZC3H6

486

P61129
SPVMHPGSPGHHPCA

ZC3H6

491

P61129
HMVAPAHPGLPTSGI

TCF7L1

291

Q9HCS4
MNPIDSCARHHGPPI

SPATA31D1

286

Q6ZQQ2
YHTIHPSLPMENGPG

PIEZO2

426

Q9H5I5
MPCGFSPSPVAHHLV

SEMA5B

1

Q9P283
CHMHIPTSGAPGSPG

ZNF503

571

Q96F45
MHKNRPPHVCPECGG

ZNF687

726

Q8N1G0
HVLMESTGPAGHCPH

THSD7B

516

Q9C0I4
PNAAGQLPTSPGHMH

SEC31A

851

O94979