Cluster composition

Functions

CategoryNameIntersectionWithQueryPValueGenesInTermGenesInQueryGenesInTermInQueryID
GeneOntologyMolecularFunctionglycosphingolipid binding

SELL PSAP LYN

8.23e-05131353GO:0043208
GeneOntologyMolecularFunctiontubulin binding

TRAF3IP1 CEP295NL CEP290 TUBGCP2 CLIP1 CEP350 CCDC66 CCDC88A BRCA2 PAFAH1B1 LYN

1.60e-0442813511GO:0015631
GeneOntologyMolecularFunctionmicrotubule binding

TRAF3IP1 CEP295NL CEP290 TUBGCP2 CLIP1 CEP350 CCDC66 CCDC88A PAFAH1B1

2.52e-043081359GO:0008017
GeneOntologyMolecularFunctionSUMO ligase activity

RGPD8 RGPD1 ZNF451

3.17e-04201353GO:0061665
MousePhenoabnormal rod electrophysiology

RGPD8 CEP290 RGPD1 CCDC66 ERC2 EGFLAM PLCB4 CTNNA1

2.11e-061191008MP:0004021
DomainGRIP_dom

RGPD8 RGPD1 TRIP11 RGPD5

9.68e-07121274IPR000237
DomainGRIP

RGPD8 RGPD1 TRIP11 RGPD5

9.68e-07121274PS50913
DomainGrip

RGPD8 RGPD1 RGPD5

4.87e-05111273SM00755
DomainGRIP

RGPD8 RGPD1 RGPD5

4.87e-05111273PF01465
DomainRan_BP1

RGPD8 RGPD1 RGPD5

6.46e-05121273PF00638
DomainRANBD1

RGPD8 RGPD1 RGPD5

6.46e-05121273PS50196
DomainCullin_repeat-like_dom

CUL4B CUL4A EXOC8

6.46e-05121273IPR016159
DomainRanBD

RGPD8 RGPD1 RGPD5

8.35e-05131273SM00160
DomainRan_bind_dom

RGPD8 RGPD1 RGPD5

8.35e-05131273IPR000156
DomainRmlC-like_jellyroll

HCN2 RIOX2 SLC9C1 KCNH2

3.98e-04511274IPR014710
DomainDOCK_N

DOCK2 DOCK4

4.53e-0451272PF16172
DomainDOCK_N

DOCK2 DOCK4

4.53e-0451272IPR032376
DomainThiolase_acyl_enz_int_AS

SCP2 ACAA2

4.53e-0451272IPR020615
DomainThiolase_C

SCP2 ACAA2

6.76e-0461272PF02803
DomainTHIOLASE_2

SCP2 ACAA2

6.76e-0461272PS00737
DomainTHIOLASE_1

SCP2 ACAA2

6.76e-0461272PS00098
DomainTHIOLASE_3

SCP2 ACAA2

6.76e-0461272PS00099
DomainThiolase_N

SCP2 ACAA2

6.76e-0461272IPR020616
DomainThiolase_C

SCP2 ACAA2

6.76e-0461272IPR020617
DomainThiolase_CS

SCP2 ACAA2

6.76e-0461272IPR020613
DomainThiolase

SCP2 ACAA2

6.76e-0461272IPR002155
DomainThiolase_N

SCP2 ACAA2

6.76e-0461272PF00108
DomainTPR_REGION

RGPD8 RGPD1 PRKDC ANAPC5 CFAP46 RGPD5

9.30e-041651276PS50293
DomainTPR

RGPD8 RGPD1 PRKDC ANAPC5 CFAP46 RGPD5

9.30e-041651276PS50005
DomainCullin_CS

CUL4B CUL4A

9.42e-0471272IPR016157
DomainRab_bind

RGPD8 RGPD1

9.42e-0471272PF16704
DomainCULLIN

CUL4B CUL4A

9.42e-0471272SM00182
DomainGCC2_Rab_bind

RGPD8 RGPD1

9.42e-0471272IPR032023
DomainIon_trans_dom

HCN2 SLC9C1 KCNC4 KCNH2 TRPV3

1.09e-031141275IPR005821
DomainIon_trans

HCN2 SLC9C1 KCNC4 KCNH2 TRPV3

1.09e-031141275PF00520
DomainCullin_neddylation_domain

CUL4B CUL4A

1.25e-0381272IPR019559
DomainCullin_Nedd8

CUL4B CUL4A

1.25e-0381272PF10557
DomainCullin_Nedd8

CUL4B CUL4A

1.25e-0381272SM00884
DomainCNMP_BINDING_1

HCN2 SLC9C1 KCNH2

1.32e-03321273PS00888
DomainCNMP_BINDING_2

HCN2 SLC9C1 KCNH2

1.32e-03321273PS00889
DomaincNMP

HCN2 SLC9C1 KCNH2

1.58e-03341273SM00100
DomaincNMP_binding

HCN2 SLC9C1 KCNH2

1.58e-03341273PF00027
DomainCullin_homology

CUL4B CUL4A

1.60e-0391272IPR016158
DomaincNMP-bd_dom

HCN2 SLC9C1 KCNH2

1.71e-03351273IPR000595
DomainCNMP_BINDING_3

HCN2 SLC9C1 KCNH2

1.71e-03351273PS50042
DomainCAP_GLY

CLIP1 CEP350

1.99e-03101272PF01302
DomainCullin

CUL4B CUL4A

1.99e-03101272PF00888
DomainCAP_GLY

CLIP1 CEP350

1.99e-03101272SM01052
Domain-

CLIP1 CEP350

1.99e-031012722.30.30.190
Domain-

SCP2 ACAA2

1.99e-031012723.40.47.10
DomainCULLIN_2

CUL4B CUL4A

1.99e-03101272PS50069
DomainCAP_GLY_1

CLIP1 CEP350

1.99e-03101272PS00845
DomainCAP_GLY_2

CLIP1 CEP350

1.99e-03101272PS50245
DomainThiolase-like

SCP2 ACAA2

1.99e-03101272IPR016039
DomainCAP-Gly_domain

CLIP1 CEP350

1.99e-03101272IPR000938
DomainCullin_N

CUL4B CUL4A

1.99e-03101272IPR001373
DomainCULLIN_1

CUL4B CUL4A

1.99e-03101272PS01256
Domain-

RGPD8 RGPD1

1.99e-031012721.10.220.60
DomaincNMP-bd-like

HCN2 SLC9C1 KCNH2

2.18e-03381273IPR018490
DomainDHR-1_domain

DOCK2 DOCK4

2.42e-03111272IPR027007
DomainDHR_2

DOCK2 DOCK4

2.42e-03111272PS51651
DomainDHR_1

DOCK2 DOCK4

2.42e-03111272PS51650
DomainDHR-2

DOCK2 DOCK4

2.42e-03111272PF06920
DomainDOCK

DOCK2 DOCK4

2.42e-03111272IPR026791
DomainDOCK_C

DOCK2 DOCK4

2.42e-03111272IPR010703
DomainDOCK-C2

DOCK2 DOCK4

2.42e-03111272PF14429
DomainDHR-2

DOCK2 DOCK4

2.42e-03111272IPR027357
DomainTPR-contain_dom

RGPD8 RGPD1 PRKDC ANAPC5 RGPD5

3.63e-031501275IPR013026
DomainK_chnl_volt-dep_EAG/ELK/ERG

HCN2 KCNH2

3.96e-03141272IPR003938
Domain-

HCN2 SLC9C1 KCNH2

4.25e-034812732.60.120.10
DomainGATA_ZN_FINGER_1

ATRX TRPS1

5.17e-03161272PS00344
DomainGATA_ZN_FINGER_2

ATRX TRPS1

5.17e-03161272PS50114
DomainTPR-like_helical_dom

RGPD8 RGPD1 PRKDC ANAPC5 CFAP46 RGPD5

5.22e-032331276IPR011990
Pubmed

An antibody-based proximity labeling map reveals mechanisms of SARS-CoV-2 inhibition of antiviral immunity.

CUL4B PRPF31 RGPD8 CEP290 TNRC6B ARHGEF18 ICE1 TUBGCP2 CEP350 ZCCHC14 CCDC88A EIF4ENIF1 WDHD1 CEBPZ PHF3 ZNF451 PFDN6

6.67e-097331391734672954
Pubmed

The human cytoplasmic dynein interactome reveals novel activators of motility.

CUL4B DOCK4 TCP1 CEP290 RGPD1 TNRC6B TUBGCP2 BIN3 CLIP1 CEP350 CCDC66 CCDC88A EIF4ENIF1 BRCA2 TSR1 LYN PFDN6 RAVER1

9.97e-098531391828718761
Pubmed

Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders.

CAD RGPD8 TRAF3IP1 RGPD1 TNRC6B ARHGEF18 UPF1 HCN2 CLIP1 TRIP11 LETM1 CYRIB CCDC13 CCDC88A ERC2 CTNNA1 GOLGA3 AFF4 RAI1

1.10e-089631391928671696
Pubmed

Pro-prion, as a membrane adaptor protein for E3 ligase c-Cbl, facilitates the ubiquitination of IGF-1R, promoting melanoma metastasis.

CUL4B DOCK4 CEP290 TRPS1 PSMD4 TUBGCP2 LETM1 CEP350 RIOX2 THADA WDHD1 PHF3 ZNF451 DENND4B PKP1 WDR48

1.88e-086891391636543142
Pubmed

Systematic analysis of human protein complexes identifies chromosome segregation proteins.

CUL4B CUL4A PRPF31 SNRNP27 RGPD8 TRAF3IP1 TRPS1 RGPD1 TUBGCP2 CLIP1 CEP350 TSR1 ZNF451 PAFAH1B1 CTNNA1 PRKDC PFDN6 ANAPC5 RGPD5 RAVER1

3.79e-0811551392020360068
Pubmed

Chr21 protein-protein interactions: enrichment in proteins involved in intellectual disability, autism, and late-onset Alzheimer's disease.

PSAP TRAF3IP1 ATRX CEP290 TRPS1 ZBTB47 PSMD4 TRIP11 FN3K PRKRA CEP350 CCDC13 ZNF451 ERC2 CTNNA1 PRKDC STAMBPL1 SNAP25 MED13 GOLGA3 AFF4

4.47e-0812851392135914814
Pubmed

Genetic and Proteomic Interrogation of Lower Confidence Candidate Genes Reveals Signaling Networks in β-Catenin-Active Cancers.

CUL4A CAD TCP1 TNRC6B PSMD4 UPF1 SERPINH1 PRKRA TSR1 CEBPZ PHF3 UCHL3 CTNNA1 PRKDC LYN PFDN6 MED13 AFF4 RAVER1

6.02e-0712471391927684187
Pubmed

An improved smaller biotin ligase for BioID proximity labeling.

TCP1 TNRC6B CCDC168 CCDC88A EIF4ENIF1 PFDN6 AHNAK2

6.75e-07123139726912792
Pubmed

Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer.

CUL4B CUL4A PRPF31 CAD ATRX TCP1 TRPS1 UPF1 SERPINH1 RTF1 WDHD1 TSR1 PHF3 UCHL3 ZNF451 PRKDC MED13

6.79e-0710141391732416067
Pubmed

KAP1 facilitates reinstatement of heterochromatin after DNA replication.

PRPF31 CAD TCP1 PSMD4 UPF1 PRKRA SLC25A12 WDHD1 UPF2 CEBPZ GYS1 PAFAH1B1 ACAA2 PRKDC

9.75e-077041391429955894
Pubmed

Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1-CoREST interactome during embryonic stem cell differentiation.

SNRNP27 ZNF148 RGPD8 TRPS1 RGPD1 TNRC6B ICE1 CCDC88A EIF4ENIF1 BRCA2 GOLGA3

1.05e-064181391134709266
Pubmed

In silico APC/C substrate discovery reveals cell cycle-dependent degradation of UHRF1 and other chromatin regulators.

CUL4A PRPF31 CAD TNRC6B PSMD4 UPF1 SERPINH1 RIOX2 WDHD1 UPF2 TSR1 CEBPZ ERC2 SHCBP1L PFDN6 ANAPC5

1.85e-069711391633306668
Pubmed

Complex genomic rearrangements lead to novel primate gene function.

RGPD8 RGPD1 RGPD5

2.16e-067139315710750
Pubmed

Proximity labeling of endogenous RICTOR identifies mTOR complex 2 regulation by ADP ribosylation factor ARF1.

CUL4B CUL4A RGPD8 TCP1 TRPS1 RGPD1 UPF1 RGPD5

2.63e-06215139835973513
Pubmed

The p300/YY1/miR-500a-5p/HDAC2 signalling axis regulates cell proliferation in human colorectal cancer.

CUL4B CUL4A CAD TCP1 LETM1 CDYL PRKDC AHNAK2 RAVER1

3.42e-06298139930737378
Pubmed

Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones.

CUL4B TNRC6B RTF1 ZCCHC14 MLC1 PHF3 ERC2 WDR48

3.69e-06225139812168954
Pubmed

Assembly of the U5 snRNP component PRPF8 is controlled by the HSP90/R2TP chaperones.

CUL4A PRPF31 CAD TCP1 CARS1 TNRC6B MRPL28 UPF1 SERPINH1 LETM1 RTF1 TSR1 CEBPZ PKP1 AK2 CTNNA1 PRKDC AHNAK2 RAVER1

3.84e-0614151391928515276
Pubmed

Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.

PRPF31 SNRNP27 TRAF3IP1 TCP1 RGPD1 ARHGEF18 AK2 PFDN6 GOLGA3 AFF4

4.14e-063901391017643375
Pubmed

The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis.

CUL4A CAD TCP1 ZBTB47 UPF1 TUBGCP2 SERPINH1 CLIP1 AK2 PRKDC

4.73e-063961391026687479
Pubmed

An organelle-specific protein landscape identifies novel diseases and molecular mechanisms.

CUL4B CUL4A PRPF31 TRAF3IP1 ATRX CEP290 CLIP1 TRIP11 EXOC8 SLC9C1 THADA CCDC88A EIF4ENIF1 GYS1 PAFAH1B1 CTNNA1 WDR48 RAVER1

5.79e-0613211391827173435
Pubmed

Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries.

DOCK4 TNRC6B ZCCHC14 MLC1 PHF3 ZNF451 DENND4B ERC2 ANKRD12 WDR48

6.02e-064071391012693553
Pubmed

Characterization of staufen1 ribonucleoproteins by mass spectrometry and biochemical analyses reveal the presence of diverse host proteins associated with human immunodeficiency virus type 1.

CAD TCP1 UPF1 SERPINH1 PRKRA PRKDC GOLGA3 RAVER1

6.11e-06241139823125841
Pubmed

A Degradation Motif in STAU1 Defines a Novel Family of Proteins Involved in Inflammation.

PRPF31 TNRC6B UPF1 PRKRA CEP350 RIOX2 EIF4ENIF1 UPF2 CEBPZ PHF3 AHNAK2 WDR48 RAVER1

7.30e-067241391336232890
Pubmed

Cullin4 E3 Ubiquitin Ligases Regulate Male Gonocyte Migration, Proliferation and Blood-Testis Barrier Homeostasis.

CUL4B CUL4A CTNNA1

7.34e-0610139334685710
Pubmed

The histone acetyltransferase KAT6A is recruited to unmethylated CpG islands via a DNA binding winged helix domain.

ZNF148 ATRX MRPL28 PRKRA RTF1 CEP350 CCDC88A TSR1 CEBPZ AFF4

7.44e-064171391036537216
Pubmed

Identification of SUMO Binding Proteins Enriched after Covalent Photo-Cross-Linking.

ATRX TCP1 UPF1 WDHD1 TSR1 PHF3 GYS1 PRKDC AHNAK2

8.16e-06332139932786267
Pubmed

A High-Density Human Mitochondrial Proximity Interaction Network.

CAD RGPD8 TCP1 MRPL28 PSMD4 UPF1 TRIP11 LETM1 IVD THADA SLC25A12 EIF4ENIF1 UPF2 SCP2 AK2 ACAA2 GOLGA3 AHNAK2 RAVER1

8.48e-0614961391932877691
Pubmed

LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells.

PRPF31 CAD TCP1 CEP290 TUBGCP2 CEP350 CCDC88A EIF4ENIF1 PKP1 PRKDC GOLGA3 RAVER1

1.07e-056391391223443559
Pubmed

Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes.

CUL4A RNASEH2B CEP290 TNRC6B SERPINH1 CEP350 CCDC66 TSR1 SCP2 CDYL MED13 RAI1

1.17e-056451391225281560
Pubmed

Targeting USP10 induces degradation of oncogenic ANLN in esophageal squamous cell carcinoma.

PRPF31 CAD TCP1 MRPL28 UPF1 TUBGCP2 SERPINH1 PRKRA UPF2 TSR1 CEBPZ PHF3 PKP1 CTNNA1 PRKDC LYN RAVER1

1.18e-0512571391736526897
Pubmed

Defining the human deubiquitinating enzyme interaction landscape.

CUL4B CUL4A PRPF31 SNRNP27 PSMD4 ICE1 TUBGCP2 EXOC8 UCHL3 GYS1 PKP1 STAMBPL1 PFDN6 RGPD5 WDR48

1.28e-0510051391519615732
Pubmed

EVI1 oncoprotein interacts with a large and complex network of proteins and integrates signals through protein phosphorylation.

ZNF148 TRPS1 CAGE1 UPF1 PKP1 PRKDC

1.33e-05128139623858473
Pubmed

TRiC controls transcription resumption after UV damage by regulating Cockayne syndrome protein A.

CUL4B CUL4A TCP1 PFDN6

1.46e-0537139429531219
Pubmed

Modulation of RNA-binding properties of the RNA helicase UPF1 by its activator UPF2.

UPF1 UPF2

1.59e-052139236456182
Pubmed

Dysregulation of CUL4A and CUL4B Ubiquitin Ligases in Lung Cancer.

CUL4B CUL4A

1.59e-052139227974468
Pubmed

Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2.

UPF1 UPF2

1.59e-052139221419344
Pubmed

Discovery and characterization of potent And-1 inhibitors for cancer treatment.

CUL4B WDHD1

1.59e-052139234923765
Pubmed

Results of the determination of serum markers in patients with malignant melanoma.

UPF1 UPF2

1.59e-052139217469741
Pubmed

HoxB5 is an upstream transcriptional switch for differentiation of the vascular endothelium from precursor cells.

HOXB5 KDR

1.59e-052139212897140
Pubmed

Regulation of DNA-dependent protein kinase by the Lyn tyrosine kinase.

PRKDC LYN

1.59e-05213929748231
Pubmed

4E-T-bound mRNAs are stored in a silenced and deadenylated form.

TNRC6B EIF4ENIF1

1.59e-052139232354837
Pubmed

Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2.

UPF1 UPF2

1.59e-052139219556969
Pubmed

Mutations in Cullin 4B result in a human syndrome associated with increased camptothecin-induced topoisomerase I-dependent DNA breaks.

CUL4B CUL4A

1.59e-052139220064923
Pubmed

Alpha-catenin-dependent recruitment of the centrosomal protein CAP350 to adherens junctions allows epithelial cells to acquire a columnar shape.

CEP350 CTNNA1

1.59e-052139225764135
Pubmed

LIS1, CLIP-170's key to the dynein/dynactin pathway.

CLIP1 PAFAH1B1

1.59e-052139211940666
Pubmed

Interaction between Ski7p and Upf1p is required for nonsense-mediated 3'-to-5' mRNA decay in yeast.

UPF1 UPF2

1.59e-052139212881429
Pubmed

Massively parallel sequencing of the mouse exome to accurately identify rare, induced mutations: an immediate source for thousands of new mouse models.

DOCK2 PRKDC LYN

1.74e-0513139322724066
Pubmed

Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways.

CUL4A CAD CEP290 OBSCN SERPINH1 SLC25A12 PAFAH1B1 PKP1 ERC2 ACAA2 PRKDC

1.78e-055641391121565611
Pubmed

A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape.

CAD TCP1 MRPL28 PSMD4 UPF1 TUBGCP2 SERPINH1 LETM1 CYRIB PRKRA THADA CEBPZ ACAA2 CTNNA1 PRKDC SNAP25 AHNAK2 RAVER1

1.85e-0514401391830833792
Pubmed

In-Depth In Vivo Crosslinking in Minutes by a Compact, Membrane-Permeable, and Alkynyl-Enrichable Crosslinker.

CYLC1 RGPD8 ATRX RGPD1 CAGE1 LETM1 IVD SLC25A12 CEBPZ ERC2 KDR PRKDC DTHD1 MED13 RAI1 CFAP46 BAHCC1 RGPD5

1.88e-0514421391835575683
Pubmed

Phenotypic and Interaction Profiling of the Human Phosphatases Identifies Diverse Mitotic Regulators.

CAD TCP1 CEP290 TRPS1 PSMD4 LETM1 CEP350 CCDC88A TSR1 CEBPZ AK2 CTNNA1 PFDN6 WDR48 RAVER1

2.11e-0510491391527880917
Pubmed

A high-throughput approach for measuring temporal changes in the interactome.

CUL4B CUL4A RNASEH2B PSAP TCP1 CARS1 PSMD4 SERPINH1 CLIP1 RTF1 WDHD1 TSR1 PAFAH1B1 ACAA2 CTNNA1 PRKDC PFDN6 AHNAK2

2.12e-0514551391822863883
Pubmed

Genome-wide CRISPR screens identify novel regulators of wild-type and mutant p53 stability.

DOCK4 CAD RGPD8 ATRX TUBGCP2 SERPINH1 TRIP11 CCDC88A BRCA2 ZNF451 ERC2

2.61e-055881391138580884
Pubmed

CHK2-BRCA1 tumor-suppressor axis restrains oncogenic Aurora-A kinase to ensure proper mitotic microtubule assembly.

CAD TCP1 ZBTB47 TNRC6B PSMD4 UPF1 SERPINH1 CLIP1 PRKRA CTNNA1

3.18e-054941391026831064
Pubmed

Systematic identification of factors for provirus silencing in embryonic stem cells.

CAD RGPD8 RGPD1 TSR1 CTNNA1 ANAPC5

3.64e-05153139626365490
Pubmed

Identification of new ciliary signaling pathways in the brain and insights into neurological disorders.

HCN2 XKR4 FN3K MLC1 DENND4B LRRTM4 CD47 SNAP25 WDR48

3.90e-05405139938187761
Pubmed

Targeted ubiquitination and degradation of G-protein-coupled receptor kinase 5 by the DDB1-CUL4 ubiquitin ligase complex.

CUL4B CUL4A DOCK4 GYS1 PRKDC AFF4

4.06e-05156139622952844
Pubmed

Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.

CUL4B CUL4A ZNF148 TRPS1 TNRC6B TUBGCP2 THADA SLC25A12 EIF4ENIF1 KMT5B ANAPC5 AFF4 RAI1 BAHCC1 WDR48

4.29e-0511161391531753913
Pubmed

Thrombospondin-1 inhibits VEGF receptor-2 signaling by disrupting its association with CD47.

CD47 KDR

4.75e-053139220923780
Pubmed

Genetic variants in DNA repair genes and the risk of cutaneous malignant melanoma in melanoma-prone families with/without CDKN2A mutations.

PRKDC POLN

4.75e-053139221671477
Pubmed

Chromatoid Body Protein TDRD6 Supports Long 3' UTR Triggered Nonsense Mediated mRNA Decay.

UPF1 UPF2

4.75e-053139227149095
Pubmed

Identification of the cyclic-nucleotide-binding domain as a conserved determinant of ion-channel cell-surface localization.

HCN2 KCNH2

4.75e-053139215961404
Pubmed

UPF1 helicase orchestrates mutually exclusive interactions with the SMG6 endonuclease and UPF2.

UPF1 UPF2

4.75e-053139238709891
Pubmed

Dynamic regulation of TFH selection during the germinal centre reaction.

SELL LY75

4.75e-053139233536617
Pubmed

CUL4 E3 ligase regulates the proliferation and apoptosis of lung squamous cell carcinoma and small cell lung carcinoma.

CUL4B CUL4A

4.75e-053139232587774
Pubmed

Communication with the exon-junction complex and activation of nonsense-mediated decay by human Upf proteins occur in the cytoplasm.

UPF1 UPF2

4.75e-053139217803942
Pubmed

Proteasome inhibitors and knockdown of SMG1 cause accumulation of Upf1 and Upf2 in human cells.

UPF1 UPF2

4.75e-053139224173962
Pubmed

Integrins regulate hERG1 dynamics by girdin-dependent Gαi3: signaling and modeling in cancer cells.

CCDC88A KCNH2

4.75e-053139237923359
Pubmed

RB1 loss overrides PARP inhibitor sensitivity driven by RNASEH2B loss in prostate cancer.

RNASEH2B BRCA2

4.75e-053139235179959
Pubmed

The centriolar satellite protein CCDC66 interacts with CEP290 and functions in cilium formation and trafficking.

CEP290 CCDC66

4.75e-053139228235840
Pubmed

Upf1/Upf2 regulation of 3' untranslated region splice variants of AUF1 links nonsense-mediated and A+U-rich element-mediated mRNA decay.

UPF1 UPF2

4.75e-053139217000771
Pubmed

CUL4high Lung Adenocarcinomas Are Dependent on the CUL4-p21 Ubiquitin Signaling for Proliferation and Survival.

CUL4B CUL4A

4.75e-053139234119472
Pubmed

Dynein, Lis1 and CLIP-170 counteract Eg5-dependent centrosome separation during bipolar spindle assembly.

CLIP1 PAFAH1B1

4.75e-053139219020519
Pubmed

A novel UCHL3 inhibitor, perifosine, enhances PARP inhibitor cytotoxicity through inhibition of homologous recombination-mediated DNA double strand break repair.

BRCA2 UCHL3

4.75e-053139231113933
Pubmed

Macrophages prevent human red blood cell reconstitution in immunodeficient mice.

CD47 PRKDC

4.75e-053139221926352
Pubmed

Cullin4B/E3-ubiquitin ligase negatively regulates beta-catenin.

CUL4B CUL4A

4.75e-053139217954973
Pubmed

E3 ubiquitin ligase Cullin4B mediated polyubiquitination of p53 for its degradation.

CUL4B CUL4A

4.75e-053139224452595
Pubmed

A protein interaction landscape of breast cancer.

CUL4B DOCK4 ZNF148 CARS1 TRIP11 IVD SLC25A12 BRCA2 PKP1 CTNNA1 WDR48

5.16e-056341391134591612
Pubmed

TNF-α inhibits glucocorticoid receptor-induced gene expression by reshaping the GR nuclear cofactor profile.

TRPS1 RGPD1 MRPL28 TRIP11 CEP350 WDHD1 GYS1 PFDN6 RAI1 AHNAK2 RAVER1

5.45e-056381391131182584
Pubmed

Dioxin receptor is a ligand-dependent E3 ubiquitin ligase.

CUL4B CUL4A PSMD4

5.78e-0519139317392787
Pubmed

∆F508 CFTR interactome remodelling promotes rescue of cystic fibrosis.

CAD RGPD1 TNRC6B PSMD4 UPF1 SERPINH1 EXOC8 THADA SLC25A12 CTNNA1 PRKDC

6.18e-056471391126618866
Pubmed

Proximity interactions of the ubiquitin ligase Mind bomb 1 reveal a role in regulation of epithelial polarity complex proteins.

CUL4B CUL4A RGPD8 TNRC6B CCDC66 KMT5B

6.34e-05169139631462741
Pubmed

Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription.

CUL4B CAD UPF1 SERPINH1 PRKRA TSR1 CEBPZ PHF3 CTNNA1 PRKDC RAI1

6.71e-056531391122586326
Pubmed

Direct binding of CoREST1 to SUMO-2/3 contributes to gene-specific repression by the LSD1/CoREST1/HDAC complex.

CAD ATRX CARS1 ZNF451 PRKDC

6.95e-05106139519394292
Pubmed

Leukodystrophy Overview – RETIRED CHAPTER, FOR HISTORICAL REFERENCE ONLY

RNASEH2B PSAP MLC1 SCP2

7.11e-0555139424501781
Pubmed

Defining the membrane proteome of NK cells.

DOCK2 CAD CEP290 TUBGCP2 EXOC8 LRP8 PRKRA CEP350 EIF4ENIF1 GYS1 SCP2 PRKDC STAMBPL1 MED13 GOLGA3

7.15e-0511681391519946888
Pubmed

Menin and Menin-Associated Proteins Coregulate Cancer Energy Metabolism.

CUL4B PRPF31 ZNF148 TRPS1 TUBGCP2 WDHD1 UPF2 AFF4

7.28e-05341139832971831
Pubmed

Multi-omics profiling identifies a deregulated FUS-MAP1B axis in ALS/FTD-associated UBQLN2 mutants.

CUL4A CAD TCP1 PSMD4 SERPINH1 SLC25A12 PRKDC

8.06e-05256139735777956
Pubmed

Human GW182 Paralogs Are the Central Organizers for RNA-Mediated Control of Transcription.

ANAPC5 MED13 AFF4 AHNAK2

9.38e-0559139428813667
Pubmed

Elevated CD47 is a hallmark of dysfunctional aged muscle stem cells that can be targeted to augment regeneration.

CD47 PRKDC

9.47e-054139236384141
Pubmed

Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay.

UPF1 UPF2

9.47e-054139211544179
Pubmed

A phosphorylation-deubiquitination cascade regulates the BRCA2-RAD51 axis in homologous recombination.

BRCA2 UCHL3

9.47e-054139227941124
Pubmed

Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4).

UPF1 UPF2

9.47e-054139211113196
Pubmed

Calcium-dependent interaction of Lis1 with IQGAP1 and Cdc42 promotes neuronal motility.

CLIP1 PAFAH1B1

9.47e-054139216369480
Pubmed

Endothelial Dab1 signaling orchestrates neuro-glia-vessel communication in the central nervous system.

LRP8 KDR

9.47e-054139230139844
Pubmed

A yeast model of FUS/TLS-dependent cytotoxicity.

UPF1 UPF2

9.47e-054139221541368
Pubmed

Elevated HMGN4 expression potentiates thyroid tumorigenesis.

ATRX BRCA2

9.47e-054139228186538
Pubmed

Inflammation-dependent downregulation of miR-194-5p contributes to human intervertebral disc degeneration by targeting CUL4A and CUL4B.

CUL4B CUL4A

9.47e-054139230945295
Pubmed

Proximity Labeling, Quantitative Proteomics, and Biochemical Studies Revealed the Molecular Mechanism for the Inhibitory Effect of Indisulam on the Proliferation of Gastric Cancer Cells.

CUL4B CUL4A

9.47e-054139234420308
Pubmed

Sterol carrier protein-2.

SCP2 ACAA2

9.47e-054139210856712
InteractionDCAF4 interactions

CUL4B CUL4A TCP1 TNRC6B UPF1 DMXL1 PRKRA CEP350 EIF4ENIF1 CEBPZ PFDN6 WDR48 RAVER1

1.75e-0637813613int:DCAF4
InteractionBRCA1 interactions

CUL4B DOCK4 CAD ZNF148 PSAP TCP1 OBSCN CARS1 ZBTB47 TNRC6B PSMD4 UPF1 SERPINH1 CLIP1 TRIP11 PRKRA CEP350 WDHD1 BRCA2 CTNNA1 PRKDC POLN WDR48

1.01e-05124913623int:BRCA1
InteractionDCAF4L1 interactions

CUL4B CUL4A TCP1 PFDN6

1.59e-05231364int:DCAF4L1
InteractionPOC1B interactions

CUL4B CUL4A CAD TCP1 OBSCN PFDN6

2.08e-05831366int:POC1B
InteractionNUP43 interactions

CUL4A RGPD8 TCP1 TNRC6B ICE1 CCDC168 RTF1 CCDC88A EIF4ENIF1 BRCA2 CEBPZ AK2 PFDN6 AHNAK2 RGPD5

2.16e-0562513615int:NUP43
InteractionDUSP16 interactions

CAD TRIP11 LRP8 CEP350 CCDC88A EIF4ENIF1 BRCA2 ANAPC5 RGPD5

3.39e-052371369int:DUSP16
GeneFamilyCullins

CUL4B CUL4A

6.15e-0488621032
CoexpressionNAKAYA_PLASMACYTOID_DENDRITIC_CELL_FLUMIST_AGE_18_50YO_7DY_UP

CUL4B CUL4A ZNF148 ATRX TCP1 CEP290 TRPS1 CARS1 PSMD4 CLIP1 TRIP11 DMXL1 CEP350 RIOX2 UPF2 TSR1 UCHL3 DENND4B PAFAH1B1 SCP2 AK2 CDYL CTNNA1 PRKDC IQCE

3.94e-09121513725M41122
CoexpressionDAZARD_RESPONSE_TO_UV_NHEK_DN

DOCK4 ZNF148 ATRX ICE1 CEP350 ZCCHC14 WDHD1 PHF3 ZNF451 PAFAH1B1 CDYL

5.43e-0730013711M8702
CoexpressionDACOSTA_UV_RESPONSE_VIA_ERCC3_DN

DOCK4 ZNF148 ATRX ATP8B1 CLIP1 CEP350 SLC25A12 WDHD1 UPF2 BRCA2 PHF3 ZNF451 PAFAH1B1 CDYL PLCB4 LYN MED13

2.52e-0685613717M4500
CoexpressionTRAVAGLINI_LUNG_CILIATED_CELL

TRAF3IP1 CEP290 CARS1 PSMD4 BCAS1 TUBGCP2 BIN3 ENO4 LRGUK THADA CCDC66 STPG1 STK33 DTHD1 ANAPC5 IQCE CFAP46 AHNAK2

1.64e-05109313718M41649
CoexpressionRODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP

CUL4B ATRX CARS1 SERPINH1 S100A2 CCDC88A WDHD1 BRCA2 CEBPZ CDYL STAMBPL1 SNAP25 AFF4 AHNAK2

2.63e-0572113714M10237
CoexpressionPUJANA_ATM_PCC_NETWORK

DOCK2 CUL4A RNASEH2B PRPF31 SNRNP27 CAD OBSCN ARHGEF18 ICE1 S100A2 ZCCHC14 UPF2 CEBPZ PHF3 CD47 PLCB4 PRKDC LY75 LYN PFDN6

3.86e-05139413720M9585
CoexpressionDIAZ_CHRONIC_MYELOGENOUS_LEUKEMIA_UP

CUL4B CUL4A CAD ATRX TCP1 UPF1 PRKRA IVD EIF4ENIF1 KCNH2 CD47 SCP2 AK2 CDYL ACAA2 CTNNA1 PRKDC LYN ANAPC5 MED13

4.06e-05139913720M535
CoexpressionHAMAI_APOPTOSIS_VIA_TRAIL_UP

CUL4B ZNF148 CEP290 CLIP1 TRIP11 DMXL1 CEP350 CCDC88A WDHD1 CEBPZ PHF3 SCP2 SNAP25

4.20e-0565613713M18979
CoexpressionPUJANA_CHEK2_PCC_NETWORK

CUL4A RNASEH2B CAD TCP1 PRKRA WDHD1 BRCA2 TSR1 CEBPZ UCHL3 CD47 PRKDC PFDN6 ANAPC5

4.71e-0576113714M11961
CoexpressionGSE2706_UNSTIM_VS_2H_R848_DC_UP

RNASEH2B ZNF148 CEP290 ZBTB47 ARHGEF18 CCDC66 CFAP46

7.71e-051951377M4691
CoexpressionGSE20484_MCSG_VS_CXCL4_MONOCYTE_DERIVED_MACROPHAGE_DN

CEP350 ZCCHC14 EIF4ENIF1 KMT5B ZNF451 ANKRD12 IQCE

7.71e-051951377M7382
CoexpressionHALLMARK_MITOTIC_SPINDLE

DOCK2 DOCK4 TUBGCP2 CLIP1 CCDC88A BRCA2 PAFAH1B1

8.75e-051991377M5893
CoexpressionSHEN_SMARCA2_TARGETS_UP

CUL4B CUL4A ATRX PRKRA CEP350 SLC25A12 UPF2 PHF3 PAFAH1B1 CTNNA1

8.98e-0542913710M29
CoexpressionGSE37301_LYMPHOID_PRIMED_MPP_VS_GRAN_MONO_PROGENITOR_UP

CUL4A BIN3 RIOX2 CEBPZ UCHL3 STAMBPL1 AHNAK2

9.03e-052001377M8860
CoexpressionAtlasDevelopingGonad_e14.5_ testes_emap-6710_top-relative-expression-ranked_1000

CAD ZNF148 PSAP ATRX TNRC6B PSMD4 NRN1 DMXL1 ZCCHC14 KCTD14 AK2 ACAA2 EGFLAM SHCBP1L ANAPC5 WDR48 RAVER1

2.06e-0582213617gudmap_developingGonad_e14.5_ testes_1000
CoexpressionAtlasFacebaseRNAseq_e10.5_Neural Epithelium Flanking Eminence_top-relative-expression-ranked_1000_k-means-cluster#2

TRAF3IP1 ATRX CEP290 CLIP1 LETM1 CCDC66 CCDC88A BRCA2 CEBPZ PRKDC

3.28e-0531113610Facebase_RNAseq_e10.5_Neural Epithelium Flanking Eminence_1000_K2
CoexpressionAtlasFacebaseRNAseq_e10.5_Neural Epithelium Flanking Eminence_top-relative-expression-ranked_2500_k-means-cluster#5

TRAF3IP1 ATRX CEP290 TNRC6B CLIP1 LETM1 LRP8 CCDC66 CCDC88A BRCA2 CEBPZ ERC2 PRKDC ANAPC5 GOLGA3 AFF4

8.54e-0583113616Facebase_RNAseq_e10.5_Neural Epithelium Flanking Eminence_2500_K5
CoexpressionAtlasDevelopingGonad_e16.5_ovary_emap-9563_k-means-cluster#5_top-relative-expression-ranked_1000

DOCK2 DOCK4 CEP290 DMXL1 ENO4 LRRTM4 KCTD14 POLN

8.56e-052191368gudmap_developingGonad_e16.5_ovary_1000_k5
CoexpressionAtlasDevelopingKidney_e11.5_metaneph mesench_emap-3843_k-means-cluster#1_top-relative-expression-ranked_100

LRP8 HOXB5 ADAMTS18

8.88e-05141363gudmap_developingKidney_e11.5_metaneph mesench_100_k1
CoexpressionAtlasFacebaseRNAseq_e10.5_Lateral Nasal Eminence_top-relative-expression-ranked_1000_k-means-cluster#3

TRAF3IP1 ATRX CEP290 TRPS1 CLIP1 CCDC66 CCDC88A BRCA2 AFF4

1.10e-042911369Facebase_RNAseq_e10.5_Lateral Nasal Eminence_1000_K3
ToppCell(03)_KRT6B+-(2)_GFP_FOXI1|(03)_KRT6B+ / shred by cell type by condition

ATRX CEP290 TNRC6B BCAS1 CLIP1 TRIP11 RTF1 CEP350 PHF3 ANKRD12

6.91e-1019913810c425e7975f492ed5cfcca022248adb627e1d27d4
ToppCell(02)_MMP9/10+-(2)_GFP_FOXI1|(02)_MMP9/10+ / shred by cell type by condition

ATRX CEP290 TRIP11 RTF1 CCDC88A PHF3 ANKRD12 AHNAK2

2.06e-07199138818a7f9ced4364f45b184bd529f32ef02c27779d3
ToppCell(09)_Interm._secr.>cil.-(2)_GFP_FOXI1|(09)_Interm._secr.>cil. / shred by cell type by condition

ATRX CEP290 TNRC6B CLIP1 TRIP11 CEP350 PHF3 ANKRD12

2.06e-071991388fc680f85ebd3bab4c72876a19a461b0afb5f51ce
ToppCell5'-Airway_Nasal-Epithelial-Airway_ciliated-ciliated_columnar_cell_of_tracheobronchial_tree-Multiciliated_(non-nasal)-|5' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

PLIN4 TRAF3IP1 CCDC13 LRGUK STAMBPL1 CCDC152 IQCE

1.31e-06176138787de432c680b80555342afac864599bbc002c040
ToppCelldroplet-Heart-nan-3m|Heart / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

ATRX TRIP11 CEP350 CCDC88A KMT5B PAFAH1B1 GOLGA3

1.31e-061761387749b47eac5436fa34e0d243ffbc6f1897f4e431e
ToppCelldroplet-Marrow-nan-3m-Myeloid-nan|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

ATRX TRPS1 CLIP1 TRIP11 CEP350 CCDC88A STAMBPL1

1.64e-061821387f8c73baaaca145e2efc48f10f636feb79c8fc779
ToppCellLPS-IL1RA|World / V2 postpublication: Rhesus Genome Updated; Treatment groups by lineage, cell_type_level1, cell_type_level2

DOCK4 CARS1 SLC9C1 UCHL3 KDR STAMBPL1 LYN

1.76e-061841387c066c2ec4f0f1d6eb183fca5c7bb0cd45c9950dc
ToppCelldroplet-Marrow-nan-3m|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

ATRX CLIP1 TRIP11 CEP350 CCDC88A CEBPZ PHF3

1.76e-0618413871154a5ad7b8512272b7476f949ddac350910bfb7
ToppCelldroplet-Marrow-nan-3m-Myeloid|Marrow / Spleen_Marrow_Thymus - method, tissue, subtissue, age, lineage, cell ontology and free annotation

ATRX TRPS1 CLIP1 TRIP11 CEP350 CCDC88A STAMBPL1

1.83e-0618513877adfa929930cfa795cbfbd9f1a0b439e08aa765d
ToppCelldroplet-Bladder-nan|Bladder / Skin_Bladder_Kidney_Mammary_Gland - method, tissue, subtissue, age, lineage, cell ontology and free annotation

CLIP1 TRIP11 RTF1 UPF2 CEBPZ PAFAH1B1 ANKRD12

1.96e-061871387663991a8afe652e92363b64bcbd68c14d0307f0e
ToppCellTCGA-Prostate-Primary_Tumor-Prostate_Adenocarcinoma-Acinar_Adenocarcinoma-6|TCGA-Prostate / Sample_Type by Project: Shred V9

CUL4B ZNF148 ATRX TRIP11 CEP350 PRKDC MED13

2.42e-061931387abd71b2cf667ef2b1c4d88acd0c1dd19a12ff659
ToppCellrenal_cortex_nuclei-CKD+DKD_normotensive-Immune-Myeloid-Macrophage_Dendritic|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

DOCK2 DOCK4 PSAP TRPS1 CYRIB CCDC88A LYN

2.59e-061951387247803cf58c6d9c561a52aa34e581188ddad197e
ToppCellrenal_cortex_nuclei-CKD+DKD_normotensive-Immune-Myeloid|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

DOCK2 DOCK4 PSAP TRPS1 CYRIB CCDC88A LYN

2.77e-0619713878af4a1e35ce9fb4ea3d26ab619599efb7eac43a5
ToppCellCOVID-19-kidney-Macrophages|COVID-19 / Disease (COVID-19 only), tissue and cell type

DOCK2 DOCK4 PSAP TRPS1 CYRIB CCDC88A LYN

2.77e-0619713873912301018d0863144dcfac8d1fa8adc081748d7
ToppCellH1299-infected-SARSCoV2|infected / Cell line, Condition and Strain

ATRX CEP290 RTF1 CEP350 CCDC88A UPF2 ANKRD12

2.77e-0619713870fa3e4cf93e77d78b1f97b906c5b13ca741ae17e
ToppCell(11)_FOXN4+-(2)_GFP_FOXI1|(11)_FOXN4+ / shred by cell type by condition

ATRX CEP290 TRIP11 RTF1 CEP350 CCDC88A ANKRD12

2.86e-06198138776d40b8c2f8399725b3a62ee2ae0896559cf91eb
ToppCell(04)_Interm._basal>secr.-(2)_GFP_FOXI1|(04)_Interm._basal>secr. / shred by cell type by condition

ATRX CEP290 BCAS1 CLIP1 TRIP11 RTF1 ANKRD12

2.96e-06199138753ca3861f9e00dab3f3fbefb0837857ee39ab084
ToppCellsaliva-Severe-critical_progression_d12-22_with-steroid-Myeloid-Macrophage|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)

SELL PLIN4 ATRX ZCCHC14 CEBPZ BAHCC1

1.28e-051651386436ce4bc75e1ba4351c439ccad19f84ad5bcb92f
ToppCellsaliva-Severe-critical_progression_d12-22_with-steroid-Myeloid-Macrophage-macrophage,_alveolar|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)

SELL PLIN4 ATRX ZCCHC14 CEBPZ BAHCC1

1.28e-051651386242bdb7654f415391fb8e9bdc06412c7eee9c97e
ToppCellPND01-Immune-Immune_Myeloid-Monocytic-Macrophage-AM|PND01 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

PSAP CYRIB LRP8 CCDC88A CD47 LY75

2.09e-051801386cc31d2cd06161300b91b17a67bb432b75f0d719b
ToppCellPND01-Immune-Immune_Myeloid-Monocytic-Macrophage-AM-AM_mature|PND01 / Age_group by Lineage, Lineage_subclass, Cell_type, subtypes-by-prolif

PSAP CYRIB LRP8 CCDC88A CD47 LY75

2.23e-05182138694d061b7b5ebbfc564c644bc8b2d52341927145d
ToppCellTCGA-Pancreas-Primary_Tumor-Pancreatic_Adenocarcinoma-Ductal_Adenocarcinoma-1|TCGA-Pancreas / Sample_Type by Project: Shred V9

TRAF3IP1 ATRX RTF1 CEP350 UPF2 ANKRD12

2.52e-05186138603db813598b67b1e08f759758a1c2023396921fa
ToppCelldroplet-Tongue-nan|Tongue / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

ATRX TRPS1 CLIP1 RTF1 CEBPZ PAFAH1B1

2.67e-051881386d62cc37e86b7b186e53aeb7f421c4e5ee28f23bd
ToppCelldroplet-Large_Intestine-COLON_PROXIMAL|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

ZNF148 ATRX TRIP11 CEP350 KMT5B PHF3

2.92e-05191138660c986d2dcbc19d9338c03da6cb5e1d92fd48f8e
ToppCelldroplet-Large_Intestine-COLON_PROXIMAL-30m-Epithelial|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

ZNF148 ATRX TRIP11 CEP350 KMT5B PHF3

2.92e-05191138609db184cb90fe282a14474d7217068c58092c6f8
ToppCelldroplet-Large_Intestine-COLON_PROXIMAL-30m|Large_Intestine / Large_Intestine_Pancreas_Liver - method, tissue, subtissue, age, lineage, cell ontology and free annotation

ZNF148 ATRX TRIP11 CEP350 KMT5B PHF3

2.92e-051911386973117730d6ba5f127e7a0bfabfd0ff2ca7ac131
ToppCell3'-Broncho-tracheal-Epithelial-Airway_ciliated-ciliated_columnar_cell_of_tracheobronchial_tree-Multiciliated_(non-nasal)-Multiciliated_(non-nasal)_L.0.3.3.0|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

TRAF3IP1 ANKRD18B LRGUK STK33 DTHD1 CFAP46

3.19e-0519413864a2c127c90d1fefe604fcb9e796577d21b489dd6
ToppCellCOVID-19-Myeloid-Monocyte-derived_macrophages|COVID-19 / group, cell type (main and fine annotations)

DOCK2 DOCK4 PSAP TRPS1 CYRIB CCDC88A

3.28e-051951386c172c5599379c29123340621a36bfb1fc90c2115
ToppCellChildren_(3_yrs)-Immune-alveolar_macrophage_(MARCO_positive)-D139|Children_(3_yrs) / Lineage, Cell type, age group and donor

DOCK2 PSAP SLC39A11 TRPS1 CCDC88A LYN

3.28e-0519513869d649ac7d2af313481069c95349efc0c68449e2b
ToppCellCOVID-19-lung-Macrophage_CD163hi_MERTKhi|lung / Disease (COVID-19 only), tissue and cell type

DOCK2 PSAP TRPS1 CYRIB CCDC88A LYN

3.28e-051951386148fff8c3c9ba45ec36e98dff1be57e3f8294506
ToppCellrenal_cortex_nuclei-CKD+DKD_normotensive-Immune-Myeloid-Monocytic-Monocyte-derived_Cell|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

DOCK2 DOCK4 PSAP CYRIB CCDC88A LYN

3.28e-05195138662dc745e1aa3e2e58afa16c7bb2cf9b03d4e8105
ToppCell3'-Airway_Nasal-Epithelial-Airway_ciliated-multi-ciliated_epithelial_cell-Multiciliated_(nasal)-Multiciliated_(nasal)_L.0.3.1.1|3' / 5'-vs-3', Tissue groups, Lineages, Lineage subclass, Cell_type2, Cell_subtype2_L4.5

TRAF3IP1 BCAS1 STK33 DTHD1 IQCE CFAP46

3.28e-05195138679dc031258579ea328181dda33710dd897f1064a
ToppCellPBMC_fresh-frozen-Mild-Moderate_progression_d12-25-Lymphocytic|Mild-Moderate_progression_d12-25 / Compartment, severity and other cell annotations on 10x 3' data (130k)

ATRX TNRC6B CCDC66 PHF3 ANKRD12 RGPD5

3.28e-051951386ed5f772c82d4dfd1c8735224446ec9feae3fb8c2
ToppCell(1)_T_cells-(1)_T_CD4_naive|(1)_T_cells / Spleen cell shreds - cell class (v1) and cell subclass (v1)

SELL ATRX TNRC6B TRIP11 CCDC66 PHF3

3.28e-051951386d3fa551bc6f5ee5890af1040415e61ecd5d46201
ToppCellCOVID-19-Myeloid-Monocytes|COVID-19 / group, cell type (main and fine annotations)

DOCK2 PSAP TRPS1 CYRIB CCDC88A LYN

3.38e-05196138604d710267658ea5601ae2cfb4ed5acb8a29bd8a1
ToppCellCOVID-19-Myeloid-Transitioning_MDM|COVID-19 / group, cell type (main and fine annotations)

DOCK2 DOCK4 PSAP TRPS1 CYRIB CCDC88A

3.38e-0519613864929cfed1f150c1fde4d79cb49895c2ea467a18f
ToppCellChildren_(3_yrs)-Immune|Children_(3_yrs) / Lineage, Cell type, age group and donor

DOCK2 PSAP TRPS1 CYRIB CCDC88A LYN

3.47e-051971386f18807124b91310fcd84238484a80ecdba684679
ToppCellCOVID-19-lung-Macrophage_LDB2hi_OSMRhi_YAP1hi|lung / Disease (COVID-19 only), tissue and cell type

DOCK2 PSAP TRPS1 CYRIB CCDC88A LYN

3.47e-0519713863896729740d151f0eb845f1961c7b969bfbdd28d
ToppCellrenal_cortex_nuclei-CKD+DKD_normotensive-Immune-Myeloid-Monocytic|CKD+DKD_normotensive / Celltypes from Cells and Nuclei per compartment and clinical group

DOCK2 DOCK4 PSAP CYRIB CCDC88A LYN

3.47e-0519713861eb9ff8467118b943b5d443cb996168e1e1206b5
ToppCellNS-critical-d_0-4-Myeloid|d_0-4 / Location, Severity, dps_group, Lineage and Cell class of Upper airway (combined)

SELL DOCK4 PSAP CYRIB CCDC88A LYN

3.57e-05198138672d51284d267f102c26f0ae8279ee9e11e69c7e3
ToppCellmild-low-quality_cells|World / Cohort 1 (10x PBMC) with disease condition, cell group and cell class

ATRX PHF3 ZNF451 ANKRD12 DTHD1 RGPD5

3.67e-051991386f0b0097df0026496470a80d8cc9375ffd8389b00
ToppCellCOVID-19-lung|COVID-19 / Disease (COVID-19 only), tissue and cell type

DOCK2 DOCK4 PSAP CYRIB CD47 LYN

3.67e-051991386155b03b859157013e9142e9248551369127d9204
ToppCell(05)_Secretory-(2)_GFP_FOXI1|(05)_Secretory / shred by cell type by condition

ATRX BCAS1 CLIP1 TRIP11 RTF1 ANKRD12

3.67e-051991386d72d87e1e530ed894c0ad5e7b5b2b1d6b59fa098
ToppCell(01)_IL1RL1+-(2)_GFP_FOXI1|(01)_IL1RL1+ / shred by cell type by condition

ATRX TRIP11 ANKRD18B RTF1 CCDC88A ANKRD12

3.67e-051991386a2f7d0cabf35b80fe239fae34a77bf9344d5d743
ToppCellTracheal|World / Cell types per location group and 10X technology with lineage, and cell group designations

SLC39A11 TRPS1 ATP8B1 BCAS1 S100A2 PLCB4

3.78e-052001386682960e28542a3d6c119047cd0131941932cfdea
ToppCellH1299|World / Cell line, Condition and Strain

TCP1 LETM1 CCDC88A PLCB4 PRKDC AHNAK2

3.78e-05200138623f08d7cffacfced48785cd3ad230ecadb95713f
ToppCellfacs-Aorta-Heart-3m-Myeloid-nan|Aorta / Tongue_Heart_Limb_Muscle_Aorta_Diaphragm - method, tissue, subtissue, age, lineage, cell ontology and free annotation

FAM220A LRGUK LOXHD1 ANKRD34B STPG1

7.30e-05139138522a769d5195ed761ef333ef542746e1ba617a698
ToppCellsaliva-Severe-critical_progression_d12-22_with-steroid-Myeloid-Granulocytic-Neutrophil-Neu_c6-FGF23|Severe-critical_progression_d12-22_with-steroid / Compartment, severity and other cell annotations on 10x 3' data (130k)

PLIN4 TCP1 LRP8 CEP350 CCDC66

1.15e-0415313858bc09b8b1a32a8d7ac8201c626d2b306e7cc2972
DrugClorgyline

ATRX CEP290 CLIP1 TRIP11 DMXL1 CEP350 PHF3 ANKRD12 RGPD5

8.36e-071681379ctd:D003010
DrugOxantel pamoate [68813-55-8]; Down 200; 6.6uM; MCF7; HT_HG-U133A

PRPF31 BCAS1 CYRIB PHF3 CD47 CDYL LYN AFF4 WDR48

2.76e-0619413792632_DN
Drug0179445-0000 [211246-22-9]; Down 200; 10uM; MCF7; HT_HG-U133A

CUL4A LETM1 E2F8 RTF1 SLC25A12 BRCA2 KMT5B DENND4B

1.67e-0518513784755_DN
DrugAC1NRAX5

UPF1 TGM4 UPF2

1.74e-0591373CID005288137
DrugCloperastine hydrochloride [14984-68-0]; Down 200; 11uM; PC3; HT_HG-U133A

ATRX CEP290 TUBGCP2 E2F8 CEP350 CCDC88A PHF3 ANAPC5

1.95e-0518913784271_DN
DrugStrophanthidin [66-28-4]; Down 200; 9.8uM; PC3; HT_HG-U133A

ATP8B1 CYRIB HOXB5 PHF3 PAFAH1B1 AK2 ACAA2 AHNAK2

2.35e-0519413785826_DN
DrugChelidonine monohydrate (+) [476-32-4]; Down 200; 10.8uM; MCF7; HT_HG-U133A

CUL4B PRPF31 ARHGEF18 SLC25A12 WDHD1 PHF3 ANAPC5 WDR48

2.35e-0519413782779_DN
Drug5194442; Up 200; 20uM; MCF7; HT_HG-U133A

CYRIB LRP8 ZCCHC14 KCNH2 CDYL LYN BAHCC1 WDR48

2.53e-0519613786599_UP
DrugPentoxifylline [6493-05-6]; Down 200; 14.4uM; HL60; HG-U133A

PRPF31 ATP8B1 CLIP1 CYRIB CEP350 HOXB5 CCDC88A WDR48

2.53e-0519613781444_DN
DrugCyproheptadine hydrochloride [969-33-5]; Down 200; 12.4uM; PC3; HG-U133A

CUL4B ATP8B1 BIN3 RTF1 PAFAH1B1 AK2 ANKRD12 IQCE

2.63e-0519713781938_DN
DrugRamipril [87333-19-5]; Down 200; 9.6uM; MCF7; HT_HG-U133A

CYLC1 ATP8B1 CLIP1 CEP350 WDHD1 PHF3 PLCB4 WDR48

2.63e-0519713786792_DN
DrugPHA-00767505E [723337-45-9]; Up 200; 10uM; MCF7; HT_HG-U133A

CYLC1 BCAS1 CEBPZ KCNH2 CDYL LYN IQCE WDR48

2.72e-0519813786596_UP
Diseaseendometriosis (biomarker_via_orthology)

SELL KDR LYN

4.91e-05161343DOID:289 (biomarker_via_orthology)
Diseasesarcoma (is_marker_for)

ATRX KDR

2.03e-0451342DOID:1115 (is_marker_for)
DiseaseX-24020 measurement

TUBGCP2 KCNH2

2.03e-0451342EFO_0022128
DiseaseProstate cancer, familial

DOCK2 BCAS1 BRCA2 DENND4B

2.80e-04691344C2931456
Diseasesmoking status measurement, triglyceride measurement

ZNF729 ZNF676

3.03e-0461342EFO_0004530, EFO_0006527
DiseaseSenior-Loken syndrome (is_implicated_in)

TRAF3IP1 CEP290

4.24e-0471342DOID:0050576 (is_implicated_in)
DiseaseRenal dysplasia and retinal aplasia

TRAF3IP1 CEP290

4.24e-0471342cv:C0403553
DiseaseGrowth Disorders

ATRX AFF4 RAI1

5.86e-04361343C0018273
Diseasechronotype measurement

CYLC1 SNRNP27 TRAF3IP1 TRPS1 TNRC6B CLIP1 WDHD1 KCNH2 PAFAH1B1 LRRTM4 PLCB4 SHCBP1L

7.10e-0488213412EFO_0008328
Diseasegastritis

CCDC66 ERC2

7.22e-0491342EFO_0000217
DiseaseCraniofacial Abnormalities

ATRX TRPS1 LETM1 PRKRA RAI1

7.48e-041561345C0376634
DiseaseRenal dysplasia and retinal aplasia (disorder)

TRAF3IP1 CEP290

1.31e-03121342C0403553
Diseasecortex volume change measurement

BIN3 LRRTM4

2.07e-03151342EFO_0021500
DiseasePROSTATE CANCER, HEREDITARY, 1

DOCK2 BCAS1 DENND4B

2.59e-03601343C4722327
DiseaseDystonia, Limb

PRKRA SCP2

2.66e-03171342C0751093
DiseaseDystonia, Diurnal

PRKRA SCP2

2.66e-03171342C0393610
DiseaseDystonia, Paroxysmal

PRKRA SCP2

2.99e-03181342C0393588
Diseasedisease free survival

ICE1 CCDC168

2.99e-03181342EFO_0000409
Diseaseneuroimaging measurement

TRPS1 RGPD1 TNRC6B LRP8 ENO4 THADA CCDC88A DENND4B ADAMTS18 ERC2 RAI1 BAHCC1

3.54e-03106913412EFO_0004346
Diseasesquamous cell carcinoma

TRPS1 BRCA2 CDYL

3.55e-03671343EFO_0000707
DiseaseMYELODYSPLASTIC SYNDROME

ATRX BRCA2 CTNNA1

3.55e-03671343C3463824
Diseasemean reticulocyte volume

CUL4A PLIN4 CAD BCAS1 CYRIB E2F8 CEP350 THADA LY75 LYN

3.60e-0379913410EFO_0010701
DiseaseSevere Combined Immunodeficiency

AK2 PRKDC

3.69e-03201342C0085110
DiseaseMalignant Glioma

ATRX DMXL1 BRCA2

4.02e-03701343C0555198
Diseasemixed gliomas

ATRX DMXL1 BRCA2

4.02e-03701343C0259783
DiseaseAgents acting on the renin-angiotensin system use measurement

FAM220A TRPS1 ARHGEF18 RTF1 ERC2 ANAPC5

4.36e-033351346EFO_0009931

Protein segments in the cluster

PeptideGeneStartEntry
QAASKTDLKTFMGKA

CEP295NL

416

Q96MC4
NKTCKALLMGDKDFS

BAHCC1

2251

Q9P281
MDLKSSSKLKNGLTF

ARHGEF18

661

Q6ZSZ5
SSKLKNGLTFRKEDM

ARHGEF18

666

Q6ZSZ5
GNKKFLVESKKMSIS

EGFLAM

286

Q63HQ2
CSGEMLKFTEKSLAK

CAGE1

196

Q8TC20
CLSDDASKAGMVKKK

CXorf66

71

Q5JRM2
EFKKMLKSTSDGLQI

FAM220A

226

Q7Z4H9
LKANSSMSEKITKSD

ANKRD18B

911

A2A2Z9
ACLSDLKKMESKDPG

CFAP46

311

Q8IYW2
SDCTLKKMDKEGKTL

ANKRD12

636

Q6UB98
MTSLAQKICGKKTAF

DMXL1

1286

Q9Y485
IFAGADTKIMKNSGK

ATP8B1

311

O43520
EMKCSEKGFQGKLIT

ADAMTS18

1076

Q8TE60
SNGHQSKSMLKDDLK

AFF4

371

Q9UHB7
IKSTFVDGLLACMKK

POLN

541

Q7Z5Q5
KLMNSKKLSSTDCFK

RAI1

1411

Q7Z5J4
MKKDSAARAKSDLLG

RAVER1

181

Q8IY67
EMKSGLKDFKTFLTN

RGPD5

1196

Q99666
EMKSGLKDFKTFLTN

RGPD8

1196

O14715
CKEKDGTISKLQTDM

IQCE

226

Q6IPM2
SGKLLASCSADMTIK

PAFAH1B1

161

P43034
AGKTANKLMDALKDS

ANAPC5

391

Q9UJX4
DKSGKTALMHACLEK

ANKRD34B

81

A5PLL1
EMSKKLSDGTFKDSK

TRAF3IP1

311

Q8TDR0
DGSSAMGRKCSKAKA

MAGEB3

326

O15480
LKNFKGNKESTMICA

LRRTM4

326

Q86VH4
NIFMGLDKIKKTACG

NCBP2L

66

A6PVI3
DGMNSSKISIKLSKD

KMT5B

736

Q4FZB7
SGSELGKKLKATMDA

AK2

56

P54819
ATKGCLRALAMKFKT

KCNH2

746

Q12809
MALKNKAAKGSATKD

LETM1

271

O95202
GMTLLKSSKTNSDKF

LOXHD1

1001

Q8IVV2
MKSLSVSSDFLGKDK

CCDC88A

1711

Q3V6T2
KDLSKSMSGRQKLEA

PFDN6

21

O15212
MSSKKTTFNEKGEKA

CYLC1

581

P35663
KRKGEKLNDASSDKM

LY75

486

O60449
CQKLDKSFSMIKEGD

SELL

316

P14151
KGFSDCLLKLGDSMA

NRN1

36

Q9NPD7
SFLQKMADKILSTGK

TUBGCP2

441

Q9BSJ2
EKSGKDSLVSMKCSL

LRGUK

731

Q96M69
KELDIKDSKLGSSMN

ERC2

166

O15083
MKSKEGRGKALSTCA

OR5K3

226

A6NET4
KKLDKLGMRGSNTCE

IVD

241

P26440
LGKLKEEMKSCGVSN

EXOC8

586

Q8IYI6
LGSDLTSAQKEMKTK

GOLGA3

981

Q08378
KDNKLKSMSLATAGS

HOXB5

251

P09067
DGKKLSSSSKVCMEA

OBSCN

926

Q5VST9
VMCKKAAKAGLSQSL

UPF1

681

Q92900
SMKEDGCNSSDKRLK

ATRX

1116

P46100
CSSKGTLSKEMNKEL

ICE1

1196

Q9Y2F5
RASMLEDSGSKKKFK

E2F8

606

A0AVK6
SLESKDKGEKNFAMS

DOCK2

516

Q92608
FFKTMLASKSAEEGK

DOCK2

1806

Q92608
DSGKEAKNMSDSGKL

DOCK4

1771

Q8N1I0
SDALNSAIDKMTKKT

CTNNA1

361

P35221
AQMTSKSCKGEKEID

BRCA2

3246

P51587
LSSRKNMDLAKSGIK

CDYL

181

Q9Y232
LKKASGILTSEKMAN

CEP290

2151

O15078
SASVDAEKSMLSKLK

CUL4A

466

Q13619
AEKSMLSKLKHECGA

CUL4A

471

Q13619
SKKNRLLMAESEGAK

CCDC13

141

Q8IYE1
KKSTDADLAMSKSAV

BIN3

46

Q9NQY0
EGCMKKISSVNLDKL

CCDC152

6

Q4G0S7
KGEKNGMTFSSTKDL

CCDC66

81

A2RUB6
ILDMSDGKVGESSKK

CEP350

2241

Q5VT06
FTVTKKGLALKSSMD

DTHD1

306

Q6ZMT9
MGCIKSKGKDSLSDD

LYN

1

P07948
KSAFNKLASSMGKEE

DENND4B

1456

O75064
CGKSSSGKLNLMKEV

ENO4

286

A6NNW6
EKKLGMDSADSSSQK

KIAA1210

486

Q9ULL0
GAFAKTSKIDMKGCI

CYRIB

271

Q9NUQ9
QEGKGKSSMKLTNLC

CCDC168

3711

Q8NDH2
LLKGDASLKMDKSDA

CD47

91

Q08722
ALKRTLDSMNSKGCK

GYS1

86

P13807
KEGSSKDKKSAAEMN

BCAS1

496

O75363
MGSLASQATKDGKKD

PSMD4

356

P55036
TLALNFGSTLMKKKS

SLC39A11

111

Q8N1S5
VLTKGNKEMKLSDGS

HCN2

591

Q9UL51
EKSMLSKLKHECGAA

CUL4B

626

Q13620
KASSEGKSEMKKLRQ

CLIP1

781

P30622
KGSKQQCLMALDTFK

CEBPZ

276

Q03701
EMDLLTKNCKAAAGK

LRP8

406

Q14114
EMKSGLKDFKTFLTN

RGPD1

1181

P0DJD0
GELTKFKMFTKNDTL

UPF2

671

Q9HAU5
TYLNLMGKSKKDATL

PKP1

551

Q13835
MGKSKKDATLEACAG

PKP1

556

Q13835
GAKDLVCSKMSRAKD

PLIN4

76

Q96Q06
MSKGQGKDKDLNSKS

RTF1

636

Q92541
MKLSKTAVHFQDSGK

THADA

811

Q6YHU6
MADSGLDKKSTKCPD

STK33

1

Q9BYT3
TIAGCKMSKSLKNFI

CARS1

401

P49589
KGGSNCLEMKKETEI

PLCB4

986

Q15147
ELKMTGLQGKVAKCS

SMIM34

91

A8MWV9
FGEKKGKCMSLDTIK

SLC9C1

551

Q4G0N8
LMGFASFDSTKGKKV

SNRNP27

106

Q8WVK2
LKMKSLSSQASKLGE

FN3K

91

Q9H479
DKNKADLSRMSGKKD

SERPINH1

331

P50454
KRASSGDKKDDKMLF

SHCBP1L

611

Q9BZQ2
CLDFSLQKTKMKLGV

TCP1

236

P17987
TGKKMAKLCDLNKTS

TGM4

516

P49221
AFKMSDSATKKLIGE

MED13

221

Q9UHV7
GSKLAEMFSSLAKAS

KCTD14

56

Q9BQ13
FEKMSKGSLGIKFSD

SCP2

121

P22307
MKEAEKNLTDLGKFC

SNAP25

71

P60880
KKDGDMTAFNKLVST

EIF4ENIF1

476

Q9NRA8
LADKGVTAKDSKFKM

AHNAK2

2636

Q8IVF2
FALKDKSKSGMISGL

SLC25A12

166

O75746
SGALKKAGLSLKDMD

ACAA2

301

P42765
KKKDFSSKGAEDNMV

TRPS1

506

Q9UHF7
LFSRKEECSKHMSGK

ZNF451

261

Q9Y4E5
NNKDKMHFESGSTLK

UCHL3

106

P15374
CAKKKSGLVMILFSA

TMEM196

66

Q5HYL7
MKCSFDGKLKSQDTV

TSR1

751

Q2NL82
CGKASNSSSKLMEHK

ZNF676

286

Q8N7Q3
GAKTLKKDRLSASDM

WDR48

576

Q8TAF3
LAKVDKSGMKSIDTF

RNASEH2B

286

Q5TBB1
TLMSCFKSKTNRGLK

STPG1

206

Q5TH74
LDNMGKSSKKSTALS

WDHD1

936

O75717
LTNAGMLEVSACKKK

STAMBPL1

391

Q96FJ0
SSMAEFLKVKGEKSG

PRPF31

481

Q8WWY3
DGRLKMKKSSDVAFT

XKR4

6

Q5GH76
GDKTMECEKLGLSKH

PHF3

796

Q92576
LKTPKEDLCSKFGMD

MRPL28

146

Q13084
AFDKMCSKLPKSLSE

PSAP

341

P07602
ETCGKSFKRSMSLKV

ZBTB47

551

Q9UFB7
GTKELLSSDMKKDFI

RIOX2

321

Q8IUF8
SKFLRVSTKIGSCMK

CAD

746

P27708
DCGKAFTQKSTLKMH

ZNF585A

246

Q6P3V2
SLFSGILKEMDKFKT

PRKDC

2811

P78527
ESFMETGKGASKKQA

PRKRA

166

O75569
EDLNKFESLTMGAKK

ZCCHC14

331

Q8WYQ9
KKLMSLANSSEGKVD

TRIP11

1766

Q15643
MLSESQLSDGKKFKC

VSIG10

276

Q8N0Z9
KLTASDTGKTCLMKA

TRPV3

161

Q8NET8
SCQEGDKFKLSKGEM

S100A2

21

P29034
DLKTQSGSEMKKFLS

KDR

276

P35968
EKKSSGMDKESALDK

ZNF148

321

Q9UQR1
CGKAFSQKTSLKAHM

ZNF891

381

A8MT65
SKMDLSVGSLSDKKF

TNRC6B

1081

Q9UPQ9
CGKAFNDSSTLMKHK

ZNF729

941

A6NN14
SKTCLKEEMAKGEAS

KCNC4

21

Q03721
CKKKKGSMSDSANIL

MLC1

171

Q15049